#BEGIN_ECARDFILE
# Entry_ID:
CC4163A.1
# Accession_No.:
UA0004163
# Name:
Inner membrane transport protein ydhP
# Alternate_Names:
Not Available
# General_Function:
Not Available
# COG_Function:
Carbohydrate transport and metabolism (code G)
# COG_ID:
COG2814 Arabinose efflux permease (Evalue = 0.0)
# Specific_Function:
Not Available
# Riley_Gene_Function:
putative transport protein (MFS family)
# Riley_Cell_Function:
>>>
Transport
Electrochemical potential driven transporters
Porters (Uni-, Sym- and Antiporters)
The Major Facilitator Superfamily (MFS)
||
>>>
Cell structure
Membrane
||
>>>
Location of gene products
Inner membrane
# Gene_Ontology:
>>>
Function: transporter activity
||
>>>
Process: physiological process
Process: cellular physiological process
Process: transport
||
>>>
Process: localization
Process: establishment of localization
Process: transport
||
>>>
Process: cellular process
Process: cellular physiological process
Process: transport
||
>>>
Component: cell
Component: membrane
Component: intrinsic to membrane
Component: integral to membrane
# Location:
Integral membrane protein. Inner membrane (Potential)
# Blattner_Number:
b1657
# Gene_Sequence:
ATGAAAATTAACTATCCGTTGCTGGCGCTGGCGATTGGCGCGTTTGGTATCGGGACAACGGAGTTCTCGC
CAATGGGCTTGTTGCCCGTCATTGCGCGCGGTGTGGATGTCTCGATTCCCGCTGCCGGAATGTTAATCAG
TGCCTATGCAGTTGGCGTAATGGTTGGCGCGCCGCTGATGACGCTTCTACTTTCTCATCGTGCCCGCCGC
AGTGCGTTGATTTTCCTGATGGCAATTTTCACGCTCGGCAACGTACTTTCCGCCATCGCGCCGGATTATA
TGACCCTGATGCTTTCACGCATTTTGACCAGCCTGAATCACGGAGCATTTTTTGGTTTGGGTTCAGTCGT
GGCCGCAAGCGTGGTGCCAAAACATAAACAGGCCAGCGCAGTTGCCACTATGTTTATGGGGTTAACCCTG
GCAAATATCGGTGGCGTGCCGGCGGCGACCTGGTTGGGTGAAACCATCGGCTGGCGGATGTCATTTCTGG
CAACGGCGGGGCTGGGAGTGATTTCAATGGTAAGTCTGTTCTTCTCATTACCTAAAGGTGGTGCAGGGGC
ACGACCTGAAGTGAAAAAAGAGCTGGCGGTATTAATGCGTCCGCAGGTGCTGTCTGCATTGCTGACGACG
GTACTGGGAGCTGGTGCAATGTTTACTCTCTACACCTATATCTCTCCGGTACTGCAAAGTATTACCCACG
CAACACCGGTGTTCGTCACGGCAATGCTGGTGCTGATTGGTGTCGGATTCTCTATCGGTAACTATCTCGG
CGGCAAACTGGCAGATCGTTCAGTTAACGGCACGTTGAAAGGCTTTTTGTTGTTGTTGATGGTGATTATG
CTGGCAATCCCGTTCCTGGCCCGCAATGAGTTCGGCGCAGCTATTAGCATGGTGGTGTGGGGCGCAGCAA
CCTTTGCGGTCGTACCGCCGTTACAGATGCGCGTGATGCGTGTCGCCAGTGAAGCGCCAGGTCTGTCTTC
ATCAGTCAATATTGGTGCCTTTAATCTTGGAAATGCGCTGGGAGCAGCTGCTGGTGGTGCGGTAATTTCC
GCTGGGCTGGGATACAGCTTTGTGCCGGTGATGGGAGCGATTGTCGCGGGACTGGCATTATTGCTGGTGT
TTATGTCAGCCAGAAAACAACCTGAAACAGTTTGCGTTGCTAACAGCTAA
# Upstream_100_bases:
TGTTTTCTCTTTTTGTTATTTTCATTTTTTTGTGATTGCTGTCATGCTTTCGCCACTTTAATGAATATCG
CGTAATGACGCGAAGAGGTGGAGATAAGGC
# Blattner_No_Ontology:
Hypothetical, unclassified, unknown
# Gene_Position:
1734145-1735314 (Counter Clockwise)
# Centisome_Position:
37.402
# Gene_Name:
ydhP
# GC_Content:
53.33%
# Metabolic_Importance:
Unknown
# Preceding_Gene:
sodB
# Following_Gene:
purR
# Operon_Status:
No
# Operon_Components:
None
# Paralogues:
b0396 (araJ) 32; b1528 (sotB) 30; b3662 (yicM) 25; b2680/b2681 (ygaY) 23; b0353 (mhpT) 24; b1053 (yceE) 22; b4279 (yjhB) 22; b1828 (yebQ) 19; b0591 (ybdA) 25; b3691 (dgoT) 20;
# Copy Number:
Not Available
# RNA_Copy_No.:
Not Available
# Genbank_ID_(DNA):
D90810
# Genbank_ID_(Protein):
BAA15432.1
# SWISS_PROT_(AC_&_ID):
$ YDHP_ECOLI (P77389)
# 2D_Gel_Image:
Not Available
# Other_Databases:
- ECOCYC: EG13950
- EcoGene: EG13950
- EMBL: U00096
- InterPro: IPR007114; IPR011701
- Pfam: PF07690
- PIR: C64923
- PROSITE: PS50850
# Pfam_Domain/Function:
None
# Homologues:
Not Available
# Similarity:
Belongs to the major facilitator superfamily.
# EC_Number:
Not Available
# No._of_Amino_Acids:
389 (Translated Protein)
378 (Mature Protein)
# Molecular_Weight:
40065 38836
# Theoretical_pI:
10.73
# Theoretical_pI (Mature):
10.77
# Sequence:
// MKINYPLLALAIGAFGIGTTEFSPMGLLPVIARGVDVSIPAAGMLISAYAVGVMVGAPLM
// TLLLSHRARRSALIFLMAIFTLGNVLSAIAPDYMTLMLSRILTSLNHGAFFGLGSVVAAS
// VVPKHKQASAVATMFMGLTLANIGGVPAATWLGETIGWRMSFLATAGLGVISMVSLFFSL
// PKGGAGARPEVKKELAVLMRPQVLSALLTTVLGAGAMFTLYTYISPVLQSITHATPVFVT
// AMLVLIGVGFSIGNYLGGKLADRSVNGTLKGFLLLLMVIMLAIPFLARNEFGAAISMVVW
// GAATFAVVPPLQMRVMRVASEAPGLSSSVNIGAFNLGNALGAAAGGAVISAGLGYSFVPV
// MGAIVAGLALLLVFMSARKQPETVCVANS
// /\
// IGAFGIGTTEFSPMGLLPVIARGVDVSIPAAGMLISAYAVGVMVGAPLMTLLLSHRARRS
// ALIFLMAIFTLGNVLSAIAPDYMTLMLSRILTSLNHGAFFGLGSVVAASVVPKHKQASAV
// ATMFMGLTLANIGGVPAATWLGETIGWRMSFLATAGLGVISMVSLFFSLPKGGAGARPEV
// KKELAVLMRPQVLSALLTTVLGAGAMFTLYTYISPVLQSITHATPVFVTAMLVLIGVGFS
// IGNYLGGKLADRSVNGTLKGFLLLLMVIMLAIPFLARNEFGAAISMVVWGAATFAVVPPL
// QMRVMRVASEAPGLSSSVNIGAFNLGNALGAAAGGAVISAGLGYSFVPVMGAIVAGLALL
// LVFMSARKQPETVCVANS
# PROSITE_Motif:
Not Available
# Important_Sites:
Not Available
# Transmembrane:
Transmembrane 7 27 Potential
Transmembrane 44 64 Potential
Transmembrane 71 91 Potential
Transmembrane 101 121 Potential
Transmembrane 131 151 Potential
Transmembrane 160 180 Potential
Transmembrane 204 224 Potential
Transmembrane 237 257 Potential
Transmembrane 267 287 Potential
Transmembrane 291 311 Potential
Transmembrane 331 351 Potential
Transmembrane 357 377 Potential
# Cys/Met_Content:
0.3 %Cys (Translated Protein)
5.7 %Met (Translated Protein)
5.9 %Cys+Met (Translated Protein)
0.3 %Cys (Mature Protein)
5.6 %Met (Mature Protein)
5.8 %Cys+Met (Mature Protein)
# Secondary_Structure_(PDB):
>YDHP_ECOLI (Translated Protein)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HHHHHHHHHHHHHHHHHCCCCCEEEECCC
/\
>YDHP_ECOLI (Mature Protein)
KINYPLLALAIGAFGIGTTEFSPMGLLPVIARGVDVSIPAAGMLISAYAVGVMVGAPLMT
CCCCCCHHHHHHHHCCCCCCCCCCCCHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHHHH
LLLSHRARRSALIFLMAIFTLGNVLSAIAPDYMTLMLSRILTSLNHGAFFGLGSVVAASV
HHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHH
VPKHKQASAVATMFMGLTLANIGGVPAATWLGETIGWRMSFLATAGLGVISMVSLFFSLP
CCCHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC
KGGAGARPEVKKELAVLMRPQVLSALLTTVLGAGAMFTLYTYISPVLQSITHATPVFVTA
CCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHCCCHHHHHHH
MLVLIGVGFSIGNYLGGKLADRSVNGTLKGFLLLLMVIMLAIPFLARNEFGAAISMVVWG
HHHHHHHHHHHHHHHCCHHHCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHC
AATFAVVPPLQMRVMRVASEAPGLSSSVNIGAFNLGNALGAAAGGAVISAGLGYSFVPVM
CCCEEECCHHHHHHHHHHHCCCCCCCCCEECHHHHHHHHHHCCCCHHHHHCCCCHHHHHH
GAIVAGLALLLVFMSARKQPETVCVANS
HHHHHHHHHHHHHHHHCCCCCEEEECCC
# PDB_Accession:
& Not Available
# Resolution:
Not Available
# Structure_CLASS:
Unstructured
# Quaternary_Structure:
Not Available
# Interacting_Partners:
Not Available
# Cofactors:
Not Available
# Metals_Ions:
Not Available
# Kcat_Value_[1/min]:
Not Available
# Specific_Activity_[micromol/min/mg]:
Not Available
# Km_Value_[mM]:
Not Available
# Substrates:
Not Available
# Products:
Not Available
# Specific_Reaction:
Not Available
# General_Reaction:
Not Available
# Inhibitor:
Not Available
# Priority:
5.9
# Status:
Not Available
# Availability:
Not Available
#END_ECARDFILE
#BEGIN_ECARDFILE
# Entry_ID:
CC2426A.1
# Accession_No.:
UA0002426
# Name:
Putative hexulose-6-phosphate isomerase
# Alternate_Names:
HUMPI;
# General_Function:
Replication
# COG_Function:
Carbohydrate transport and metabolism (code G)
# COG_ID:
COG3623 Putative L-xylulose-5-phosphate 3-epimerase (Evalue = 1e-163)
# Specific_Function:
Isomerization Of D-Arabino-6-Hexulose 3-Phosphate To D-Fructose 6-Phosphate.
# Riley_Gene_Function:
L-xylulose 5-phosphate 3-epimerase
# Riley_Cell_Function:
>>>
Metabolism
Carbon compound utilization
Carbohydrates/Carbon compounds
L-ascorbate degradation
# Gene_Ontology:
>>>
Function: catalytic activity
Function: isomerase activity
Function: intramolecular oxidoreductase activity
Function: intramolecular oxidoreductase activity, interconverting aldoses and ketoses
||
>>>
Process: physiological process
Process: metabolism
Process: macromolecule metabolism
Process: carbohydrate metabolism
||
>>>
Process: primary metabolism
Process: carbohydrate metabolism
||
>>>
Component: Not Available
# Location:
Cytoplasm
# Blattner_Number:
b4197
# Gene_Sequence:
TTCGCGTATGTGCTTCGAAGCCAACGCTGACTGGGTGACGGTAATTTGCTGTGCGGATATCAACACCGCC
AAAGGCGCGCTGGACGTGGCAAAAGAGTTTAACGGCGACGTGCAGATCGAACTGACCGGTTACTGGACCT
GGGAACAGGCGCAACAGTGGCGCGATGCAGGCATTGGGCAGGTGGTTTATCACCGCAGCCGTGACGCGCA
GGCCGCAGGCGTGGCGTGGGGCGAAGCGGACATCACCGCGATCAAACGTCTTTCCGATATGGGCTTCAAA
GTCACCGTCACCGGAGGCCTGGCGCTGGAAGATCTGCCGCTGTTCAAGGGTATTCCGATTCACGTCTTTA
TCGCGGGCCGTAGTATCCGTGATGCCGCTTCTCCGGTGGAAGCCGCACGTCAGTTCAAACGTTCCATCGC
TGAACTGTGGGGCTAAGGAGCGGATATGTTGTCCAAACAAATCCCGCTTGGCATCTATGAAAAAGCGCTC
CCCGCCGGGGAGTGCTGGCTGGAACGCCTGCAACTGGCAAAAACGTTAGGCTTCGATTTTGTCGAAATGT
CGGTAGATGAAACTGACGATCGCCTGTCGCGCCTCAACTGGAGCCGCGAGCAGCGTCTGGCGCTGGTCAA
TGCGATTGTTGAAACCGGCGTGCGCGTGCCGTCCATGTGCCTTTCTGCTCATCGTCGTTTCCCGCTGGGC
AGTGAAGATGACGCGGTGCGGGCGCAGGGGCTGGAGATTATGCGTAAAGCTATCCAGTTCGCCCAGGATG
TCGGTATTCGCGTGATCCAGCTGGCGGGCTATGACGTTTACTATCAGGAAGCCAATAACGAAACGCGTCG
TCGTTTCCGTGACGG
# Upstream_100_bases:
CTTTATCGCGGGCCGTAGTATCCGTGATGCCGCTTCTCCGGTGGAAGCCGCACGTCAGTTCAAACGTTCC
ATCGCTGAACTGTGGGGCTAAGGAGCGGAT
# Blattner_No_Ontology:
Hypothetical, unclassified, unknown
# Gene_Position:
4420869-4421723 (Clockwise)
# Centisome_Position:
95.284
# Gene_Name:
sgaU
# GC_Content:
57.89%
# Metabolic_Importance:
Unknown
# Preceding_Gene:
sgaH
# Following_Gene:
sgaE
# Operon_Status:
Yes
# Operon_Components:
sgaT_sgaB_ptxA_sgaH_sgaU_sgaE Ref: RegulonDB http://kinich.cifn.unam.mx:8850/db/regulondb_cgi.query_simple?v_organism=ECK12&v_table=3&v_name=sgaU
# Paralogues:
b3582 (sgbU) 58;
# Copy Number:
Unknown
# RNA_Copy_No.:
Log phase (2max): 0.08
Stationary phase (2max): 0.23
Ref: Nature Biotech., 18, 1262-68, Dec. 2000 (PMID=11101804)
# Genbank_ID_(DNA):
G1790641
# Genbank_ID_(Protein):
AAC77154.1
# SWISS_PROT_(AC_&_ID):
$ SGAU_ECOLI (P39305)
# 2D_Gel_Image:
Not Available
# Other_Databases:
- ECOCYC: EG12497
- EcoGene: EG12497
- EMBL: U14003
- InterPro: IPR004560
- Pfam: PF03809
- PIR: S56422
# Pfam_Domain/Function:
None
# Homologues:
Not Available
# Similarity:
Belongs to the hUMPi family.
# EC_Number:
* 5.-.-.-
# No._of_Amino_Acids:
284 (Translated Protein)
284 (Mature Protein)
# Molecular_Weight:
32007 32007
# Theoretical_pI:
4.97
# Theoretical_pI (Mature):
4.97
# Sequence:
// MLSKQIPLGIYEKALPAGECWLERLQLAKTLGFDFVEMSVDETDDRLSRLNWSREQRLAL
// VNAIVETGVRVPSMCLSAHRRFPLGSEDDAVRAQGLEIMRKAIQFAQDVGIRVIQLAGYD
// VYYQEANNETRRRFRDGLKESVEMASRAQVTLAMEIMDYPLMSSISKALGYAHYLNNPWF
// QLYPDIGNLSAWDNDVQMELQAGIGHIVAVHVKDTKPGVFKNVPFGEGVVDFERCFETLK
// QSGYCGPYLIEMWSETAEDPAAEVAKARDWVKARMAKAGMVEAA
// /\
// MLSKQIPLGIYEKALPAGECWLERLQLAKTLGFDFVEMSVDETDDRLSRLNWSREQRLAL
// VNAIVETGVRVPSMCLSAHRRFPLGSEDDAVRAQGLEIMRKAIQFAQDVGIRVIQLAGYD
// VYYQEANNETRRRFRDGLKESVEMASRAQVTLAMEIMDYPLMSSISKALGYAHYLNNPWF
// QLYPDIGNLSAWDNDVQMELQAGIGHIVAVHVKDTKPGVFKNVPFGEGVVDFERCFETLK
// QSGYCGPYLIEMWSETAEDPAAEVAKARDWVKARMAKAGMVEAA
# PROSITE_Motif:
Not Available
# Important_Sites:
Not Available
# Transmembrane:
Not Available
# Cys/Met_Content:
1.4 %Cys (Translated Protein)
4.2 %Met (Translated Protein)
5.6 %Cys+Met (Translated Protein)
1.4 %Cys (Mature Protein)
4.2 %Met (Mature Protein)
5.6 %Cys+Met (Mature Protein)
# Secondary_Structure:
>SGAU_ECOLI (Translated Protein)
MLSKQIPLGIYEKALPAGECWLERLQLAKTLGFDFVEMSVDETDDRLSRLNWSREQRLAL
CCCCCCCCCCHHHHCCCCCCHHHHHHHHHHHCCCEEEEEECCHHHHHHHCCCCHHHHHHH
VNAIVETGVRVPSMCLSAHRRFPLGSEDDAVRAQGLEIMRKAIQFAQDVGIRVIQLAGYD
HHHHHHCCCCEEEEECCHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHCCHHHHHCCCC
VYYQEANNETRRRFRDGLKESVEMASRAQVTLAMEIMDYPLMSSISKALGYAHYLNNPWF
CCCCCCCCHHHHHHHHHHHHHHHHHHHCCCEEEEEECCCCHHHHHHHHHHHHHHHCCCCE
QLYPDIGNLSAWDNDVQMELQAGIGHIVAVHVKDTKPGVFKNVPFGEGVVDFERCFETLK
EEEECCCEEEEECCHHHHHHHHHHHHHCEEEEECCCCCEECCCCCCCEEECHHHHHHHHH
QSGYCGPYLIEMWSETAEDPAAEVAKARDWVKARMAKAGMVEAA
HHCCCCEEEEEEECCCCCCHHHHHHHHHHHHHHHHHHCCCCCCC
/\
>SGAU_ECOLI (Mature Protein)
LSKQIPLGIYEKALPAGECWLERLQLAKTLGFDFVEMSVDETDDRLSRLNWSREQRLALV
CCCCCCCCCHHHHCCCCCCHHHHHHHHHHHCCCEEEEEECCHHHHHHHCCCCHHHHHHHH
NAIVETGVRVPSMCLSAHRRFPLGSEDDAVRAQGLEIMRKAIQFAQDVGIRVIQLAGYDV
HHHHHCCCCEEEEECCHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHCCHHHHHCCCCC
YYQEANNETRRRFRDGLKESVEMASRAQVTLAMEIMDYPLMSSISKALGYAHYLNNPWFQ
CCCCCCCHHHHHHHHHHHHHHHHHHHCCCEEEEEECCCCHHHHHHHHHHHHHHHCCCCEE
LYPDIGNLSAWDNDVQMELQAGIGHIVAVHVKDTKPGVFKNVPFGEGVVDFERCFETLKQ
EEECCCEEEEECCHHHHHHHHHHHHHCEEEEECCCCCEECCCCCCCEEECHHHHHHHHHH
SGYCGPYLIEMWSETAEDPAAEVAKARDWVKARMAKAGMVEAA
HCCCCEEEEEEECCCCCCHHHHHHHHHHHHHHHHHHCCCCCCC
# PDB_Accession:
& Not Available
# Resolution:
Not Available
# Structure_CLASS:
Alpha Beta
# Quaternary_Structure:
Not Available
# Interacting_Partners:
Not Available
# Cofactors:
Not Available
# Metals_Ions:
Not Available
# Kcat_Value_[1/min]:
Not Available
# Specific_Activity_[micromol/min/mg]:
Not Available
# Km_Value_[mM]:
Not Available
# Substrates:
Not Available
# Products:
Not Available
# Specific_Reaction:
Not Available
# General_Reaction:
Not Available
# Inhibitor:
Not Available
# Priority:
8.3
# Status:
Selected, Cloned, Expressed, Soluble, Purified
# Availability:
Northeast Structural Genomics Consortium
#END_ECARDFILE
#BEGIN_ECARDFILE
# Entry_ID:
CC0369A.1
# Accession_No.:
UA0000369
# Name:
Glutamate--cysteine ligase
# Alternate_Names:
Gamma-glutamylcysteine synthetase; Gamma-ECS; GCS
# General_Function:
Fatty acid and phospholipid metabolism
# COG_Function:
Coenzyme transport and metabolism (code H)
# COG_ID:
COG2918 Gamma-glutamylcysteine synthetase (Evalue = 0.0)
# Specific_Function:
Not Available
# Riley_Gene_Function:
gamma-glutamate-cysteine ligase
# Riley_Cell_Function:
>>>
Metabolism
Building block biosynthesis
Cofactor, small molecule carrier
Glutathione
# Gene_Ontology:
>>>
Function: catalytic activity
Function: ligase activity
Function: ligase activity, forming carbon-nitrogen bonds
Function: acid-amino acid ligase activity
Function: glutamate-cysteine ligase activity
||
>>>
Function: catalytic activity
Function: ligase activity
Function: ligase activity, forming carbon-nitrogen bonds
Function: acid-amino acid ligase activity
Function: glutamate-cysteine ligase activity
||
>>>
Process: physiological process
Process: metabolism
Process: biosynthesis
Process: cellular biosynthesis
Process: sulfur compound biosynthesis
Process: glutathione biosynthesis
||
>>>
Process: cofactor biosynthesis
Process: coenzyme biosynthesis
Process: glutathione biosynthesis
||
>>>
Process: cellular metabolism
Process: sulfur metabolism
Process: glutathione metabolism
Process: glutathione biosynthesis
||
>>>
Process: sulfur compound biosynthesis
Process: glutathione biosynthesis
||
>>>
Process: cellular biosynthesis
Process: sulfur compound biosynthesis
Process: glutathione biosynthesis
||
>>>
Process: cofactor biosynthesis
Process: coenzyme biosynthesis
Process: glutathione biosynthesis
||
>>>
Process: cofactor metabolism
Process: coenzyme metabolism
Process: glutathione metabolism
Process: glutathione biosynthesis
||
>>>
Process: coenzyme biosynthesis
Process: glutathione biosynthesis
||
>>>
Process: cofactor biosynthesis
Process: coenzyme biosynthesis
Process: glutathione biosynthesis
||
>>>
Process: cellular physiological process
Process: cellular metabolism
Process: sulfur metabolism
Process: glutathione metabolism
Process: glutathione biosynthesis
||
>>>
Process: sulfur compound biosynthesis
Process: glutathione biosynthesis
||
>>>
Process: cellular biosynthesis
Process: sulfur compound biosynthesis
Process: glutathione biosynthesis
||
>>>
Process: cofactor biosynthesis
Process: coenzyme biosynthesis
Process: glutathione biosynthesis
||
>>>
Process: cofactor metabolism
Process: coenzyme metabolism
Process: glutathione metabolism
Process: glutathione biosynthesis
||
>>>
Process: coenzyme biosynthesis
Process: glutathione biosynthesis
||
>>>
Process: cofactor biosynthesis
Process: coenzyme biosynthesis
Process: glutathione biosynthesis
||
>>>
Process: cellular process
Process: cellular physiological process
Process: cellular metabolism
Process: sulfur metabolism
Process: glutathione metabolism
Process: glutathione biosynthesis
||
>>>
Process: sulfur compound biosynthesis
Process: glutathione biosynthesis
||
>>>
Process: cellular biosynthesis
Process: sulfur compound biosynthesis
Process: glutathione biosynthesis
||
>>>
Process: cofactor biosynthesis
Process: coenzyme biosynthesis
Process: glutathione biosynthesis
||
>>>
Process: cofactor metabolism
Process: coenzyme metabolism
Process: glutathione metabolism
Process: glutathione biosynthesis
||
>>>
Process: coenzyme biosynthesis
Process: glutathione biosynthesis
||
>>>
Process: cofactor biosynthesis
Process: coenzyme biosynthesis
Process: glutathione biosynthesis
Process: physiological process
Process: metabolism
Process: biosynthesis
Process: cellular biosynthesis
Process: sulfur compound biosynthesis
Process: glutathione biosynthesis
||
>>>
Process: cofactor biosynthesis
Process: coenzyme biosynthesis
Process: glutathione biosynthesis
||
>>>
Process: cellular metabolism
Process: sulfur metabolism
Process: glutathione metabolism
Process: glutathione biosynthesis
||
>>>
Process: sulfur compound biosynthesis
Process: glutathione biosynthesis
||
>>>
Process: cellular biosynthesis
Process: sulfur compound biosynthesis
Process: glutathione biosynthesis
||
>>>
Process: cofactor biosynthesis
Process: coenzyme biosynthesis
Process: glutathione biosynthesis
||
>>>
Process: cofactor metabolism
Process: coenzyme metabolism
Process: glutathione metabolism
Process: glutathione biosynthesis
||
>>>
Process: coenzyme biosynthesis
Process: glutathione biosynthesis
||
>>>
Process: cofactor biosynthesis
Process: coenzyme biosynthesis
Process: glutathione biosynthesis
||
>>>
Process: cellular physiological process
Process: cellular metabolism
Process: sulfur metabolism
Process: glutathione metabolism
Process: glutathione biosynthesis
||
>>>
Process: sulfur compound biosynthesis
Process: glutathione biosynthesis
||
>>>
Process: cellular biosynthesis
Process: sulfur compound biosynthesis
Process: glutathione biosynthesis
||
>>>
Process: cofactor biosynthesis
Process: coenzyme biosynthesis
Process: glutathione biosynthesis
||
>>>
Process: cofactor metabolism
Process: coenzyme metabolism
Process: glutathione metabolism
Process: glutathione biosynthesis
||
>>>
Process: coenzyme biosynthesis
Process: glutathione biosynthesis
||
>>>
Process: cofactor biosynthesis
Process: coenzyme biosynthesis
Process: glutathione biosynthesis
||
>>>
Process: cellular process
Process: cellular physiological process
Process: cellular metabolism
Process: sulfur metabolism
Process: glutathione metabolism
Process: glutathione biosynthesis
||
>>>
Process: sulfur compound biosynthesis
Process: glutathione biosynthesis
||
>>>
Process: cellular biosynthesis
Process: sulfur compound biosynthesis
Process: glutathione biosynthesis
||
>>>
Process: cofactor biosynthesis
Process: coenzyme biosynthesis
Process: glutathione biosynthesis
||
>>>
Process: cofactor metabolism
Process: coenzyme metabolism
Process: glutathione metabolism
Process: glutathione biosynthesis
||
>>>
Process: coenzyme biosynthesis
Process: glutathione biosynthesis
||
>>>
Process: cofactor biosynthesis
Process: coenzyme biosynthesis
Process: glutathione biosynthesis
||
>>>
Component: Not Available
# Location:
Cytoplasm
# Blattner_Number:
b2688
# Gene_Sequence:
TTGATCCCGGACGTATCACAGGCGCTGGCCTGGCTGGAAAAACATCCTCAGGCGTTAAAGGGGATACAGC
GTGGGCTGGAGCGCGAAACTTTGCGTGTTAATGCTGATGGCACACTGGCAACAACAGGTCATCCTGAAGC
ATTAGGTTCCGCACTGACGCACAAATGGATTACTACCGATTTTGCGGAAGCATTGCTGGAATTCATTACA
CCAGTGGATGGTGATATTGAACATATGCTGACCTTTATGCGCGATCTGCATCGTTATACGGCGCGCAATA
TGGGCGATGAGCGGATGTGGCCGTTAAGTATGCCATGCTACATCGCAGAAGGTCAGGACATCGAACTGGC
ACAGTACGGCACTTCTAACACCGGACGCTTTAAAACGCTGTATCGTGAAGGGCTGAAAAATCGCTACGGC
GCGCTGATGCAAACCATTTCCGGCGTGCACTACAATTTCTCTTTGCCAATGGCATTCTGGCAAGCGAAGT
GCGGTGATATCTCGGGCGCTGATGCCAAAGAGAAAATTTCTGCGGGCTATTTCCGCGTTATCCGCAATTA
CTATCGTTTCGGTTGGGTCATTCCTTATCTGTTTGGTGCATCTCCGGCGATTTGTTCTTCTTTCCTGCAA
GGAAAACCAACGTCGCTGCCGTTTGAGAAAACCGAGTGCGGTATGTATTACCTGCCGTATGCGACCTCTC
TTCGTTTGAGCGATCTCGGCTATACCAATAAATCGCAAAGCAATCTTGGTATTACCTTCAACGATCTTTA
CGAGTACGTAGCGGGCCTTAAACAGGCAATCAAAACGCCATCGGAAGAGTACGCGAAGATTGGTATTGAG
AAAGACGGTAAGAGGCTGCAAATCAACAGCAACGTGTTGCAGATTGAAAACGAACTGTACGCGCCGATTC
GTCCAAAACGCGTTACCCGCAGCGGCGAGTCGCCTTCTGATGCGCTGTTACGTGGCGGCATTGAATATAT
TGAAGTGCGTTCGCTGGACATCAACCCGTTCTCGCCGATTGGTGTAGATGAACAGCAGGTGCGATTCCTC
GACCTGTTTATGGTCTGGTGTGCGCTGGCTGATGCACCGGAAATGAGCAGTAGCGAACTTGCCTGTACAC
GCGTTAACTGGAACCGGGTGATCCTCGAAGGTCGCAAACCGGGTCTGACGCTGGGTATCGGCTGCGAAAC
CGCACAGTTCCCGTTACCGCAGGTGGGTAAAGATCTGTTCCGCGATCTGAAACGCGTCGCGCAAACGCTG
GATAGTATTAACGGCGGCGAAGCGTATCAGAAAGTGTGTGATGAACTGGTTGCCTGCTTCGATAATCCCG
ATCTGACTTTCTCTGCCCGTATCTTAAGGTCTATGATTGATACTGGTATTGGCGGAACAGGCAAAGCATT
TGCAGAAGCCTACCGTAATCTGCTGCGTGAAGAGCCGCTGGAAATTCTGCGCGAAGAGGATTTTGTAGCC
GAGCGCGAGGCGTCTGAACGCCGTCAGCAGGAAATGGAAGCCGCTGATACCGAACCGTTTGCGGTGTGGC
TGGAAAAACACGCCTGA
# Upstream_100_bases:
CGTTCAGGGCATGATGTGGTGGCACTAATTGTAGGCCTGCACATATGGTCACCATTACAGTTATGCTAAT
TAAAACGATTTTGACAGGCGGGAGGTCAAT
# Blattner_No_Ontology:
Biosynthesis of cofactors, prosthetic groups and carriers
# Gene_Position:
2812905-2814461 (Counter Clockwise)
# Centisome_Position:
60.661
# Gene_Name:
gshA or gsh-I
# GC_Content:
51.32%
# Metabolic_Importance:
Non_Essential
# Preceding_Gene:
sraD
# Following_Gene:
yqaA
# Operon_Status:
No
# Operon_Components:
None
# Paralogues:
None
# Copy Number:
Unknown
# RNA_Copy_No.:
Log phase (2max): 0.26
Stationary phase (2max): 2.34
Ref: Nature Biotech., 18, 1262-68, Dec. 2000 (PMID=11101804)
# Genbank_ID_(DNA):
G1789044
# Genbank_ID_(Protein):
AAC75735.1
# SWISS_PROT_(AC_&_ID):
$ GSH1_ECOLI (P0A6W9)
# 2D_Gel_Image:
Not Available
# Other_Databases:
- ECOCYC: EG10418
- EcoGene: EG10418
- EMBL: X03954
- InterPro: IPR007370; IPR006334
- Pfam: PF04262
- PIR: A65049
# Pfam_Domain/Function:
PF04262 Glutamate-cysteine ligase;
# Homologues:
Not Available
# Similarity:
Belongs to the glutamate--cysteine ligase type 1 family. Type 1 subfamily.
# EC_Number:
6.3.2.2
# No._of_Amino_Acids:
518 (Translated Protein)
518 (Mature Protein)
# Molecular_Weight:
58270 58270
# Theoretical_pI:
5.04
# Theoretical_pI (Mature):
5.04
# Sequence:
// MIPDVSQALAWLEKHPQALKGIQRGLERETLRVNADGTLATTGHPEALGSALTHKWITTD
// FAEALLEFITPVDGDIEHMLTFMRDLHRYTARNMGDERMWPLSMPCYIAEGQDIELAQYG
// TSNTGRFKTLYREGLKNRYGALMQTISGVHYNFSLPMAFWQAKCGDISGADAKEKISAGY
// FRVIRNYYRFGWVIPYLFGASPAICSSFLQGKPTSLPFEKTECGMYYLPYATSLRLSDLG
// YTNKSQSNLGITFNDLYEYVAGLKQAIKTPSEEYAKIGIEKDGKRLQINSNVLQIENELY
// APIRPKRVTRSGESPSDALLRGGIEYIEVRSLDINPFSPIGVDEQQVRFLDLFMVWCALA
// DAPEMSSSELACTRVNWNRVILEGRKPGLTLGIGCETAQFPLPQVGKDLFRDLKRVAQTL
// DSINGGEAYQKVCDELVACFDNPDLTFSARILRSMIDTGIGGTGKAFAEAYRNLLREEPL
// EILREEDFVAEREASERRQQEMEAADTEPFAVWLEKHA
// /\
// MIPDVSQALAWLEKHPQALKGIQRGLERETLRVNADGTLATTGHPEALGSALTHKWITTD
// FAEALLEFITPVDGDIEHMLTFMRDLHRYTARNMGDERMWPLSMPCYIAEGQDIELAQYG
// TSNTGRFKTLYREGLKNRYGALMQTISGVHYNFSLPMAFWQAKCGDISGADAKEKISAGY
// FRVIRNYYRFGWVIPYLFGASPAICSSFLQGKPTSLPFEKTECGMYYLPYATSLRLSDLG
// YTNKSQSNLGITFNDLYEYVAGLKQAIKTPSEEYAKIGIEKDGKRLQINSNVLQIENELY
// APIRPKRVTRSGESPSDALLRGGIEYIEVRSLDINPFSPIGVDEQQVRFLDLFMVWCALA
// DAPEMSSSELACTRVNWNRVILEGRKPGLTLGIGCETAQFPLPQVGKDLFRDLKRVAQTL
// DSINGGEAYQKVCDELVACFDNPDLTFSARILRSMIDTGIGGTGKAFAEAYRNLLREEPL
// EILREEDFVAEREASERRQQEMEAADTEPFAVWLEKHA
# PROSITE_Motif:
Not Available
# Important_Sites:
Not Available
# Transmembrane:
Not Available
# Cys/Met_Content:
1.7 %Cys (Translated Protein)
2.5 %Met (Translated Protein)
4.2 %Cys+Met (Translated Protein)
1.7 %Cys (Mature Protein)
2.5 %Met (Mature Protein)
4.2 %Cys+Met (Mature Protein)
# Secondary_Structure:
>GSH1_ECOLI (Translated Protein)
MIPDVSQALAWLEKHPQALKGIQRGLERETLRVNADGTLATTGHPEALGSALTHKWITTD
CCHHHHHHHHHHHHCHHHHHHHHHHHHHHEEEECCCCEEECCCCHHHHHCCCCCCEECCH
FAEALLEFITPVDGDIEHMLTFMRDLHRYTARNMGDERMWPLSMPCYIAEGQDIELAQYG
HHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHCCCCCEECCCCCCCCCCCCCCEEEEECC
TSNTGRFKTLYREGLKNRYGALMQTISGVHYNFSLPMAFWQAKCGDISGADAKEKISAGY
CCCCCHHHHHHHHHHHHHHHHHHHEEEEEEECCCCCHHHHHHHCCCCCCCCHHHHHHHHH
FRVIRNYYRFGWVIPYLFGASPAICSSFLQGKPTSLPFEKTECGMYYLPYATSLRLSDLG
HHHHHHHHHHHHHHHHHHCCCHHHHHHHHCCCCCCCCCCCCCCCEEEEEECCCCCCCCCC
YTNKSQSNLGITFNDLYEYVAGLKQAIKTPSEEYAKIGIEKDGKRLQINSNVLQIENELY
CCCCCCCCCCCCHHHHHHHHHHHHHHHHCCCHHHHHCCCCCCCCEEEECCHHHHHHHHHC
APIRPKRVTRSGESPSDALLRGGIEYIEVRSLDINPFSPIGVDEQQVRFLDLFMVWCALA
CCCCCCCCCCCCCCHHHHHHHCCCCEEEEEEECCCCCCCCCCCHHHHHHHHHHHHHHHHH
DAPEMSSSELACTRVNWNRVILEGRKPGLTLGIGCETAQFPLPQVGKDLFRDLKRVAQTL
CCCCCCCCHHCCCCCCCHHCCCCCCCCCCEEEECCCCCEEEHHHHHHHHHHHHHHHHHHH
DSINGGEAYQKVCDELVACFDNPDLTFSARILRSMIDTGIGGTGKAFAEAYRNLLREEPL
HHCCCCHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHCCH
EILREEDFVAEREASERRQQEMEAADTEPFAVWLEKHA
HHHCHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHCC
/\
>GSH1_ECOLI (Mature Protein)
MIPDVSQALAWLEKHPQALKGIQRGLERETLRVNADGTLATTGHPEALGSALTHKWITTD
CCHHHHHHHHHHHHCHHHHHHHHHHHHHHEEEECCCCEEECCCCHHHHHCCCCCCEECCH
FAEALLEFITPVDGDIEHMLTFMRDLHRYTARNMGDERMWPLSMPCYIAEGQDIELAQYG
HHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHCCCCCEECCCCCCCCCCCCCCEEEEECC
TSNTGRFKTLYREGLKNRYGALMQTISGVHYNFSLPMAFWQAKCGDISGADAKEKISAGY
CCCCCHHHHHHHHHHHHHHHHHHHEEEEEEECCCCCHHHHHHHCCCCCCCCHHHHHHHHH
FRVIRNYYRFGWVIPYLFGASPAICSSFLQGKPTSLPFEKTECGMYYLPYATSLRLSDLG
HHHHHHHHHHHHHHHHHHCCCHHHHHHHHCCCCCCCCCCCCCCCEEEEEECCCCCCCCCC
YTNKSQSNLGITFNDLYEYVAGLKQAIKTPSEEYAKIGIEKDGKRLQINSNVLQIENELY
CCCCCCCCCCCCHHHHHHHHHHHHHHHHCCCHHHHHCCCCCCCCEEEECCHHHHHHHHHC
APIRPKRVTRSGESPSDALLRGGIEYIEVRSLDINPFSPIGVDEQQVRFLDLFMVWCALA
CCCCCCCCCCCCCCHHHHHHHCCCCEEEEEEECCCCCCCCCCCHHHHHHHHHHHHHHHHH
DAPEMSSSELACTRVNWNRVILEGRKPGLTLGIGCETAQFPLPQVGKDLFRDLKRVAQTL
CCCCCCCCHHCCCCCCCHHCCCCCCCCCCEEEECCCCCEEEHHHHHHHHHHHHHHHHHHH
DSINGGEAYQKVCDELVACFDNPDLTFSARILRSMIDTGIGGTGKAFAEAYRNLLREEPL
HHCCCCHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHCCH
EILREEDFVAEREASERRQQEMEAADTEPFAVWLEKHA
HHHCHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHCC
# PDB_Accession:
& Not Available
# Resolution:
Not Available
# Structure_CLASS:
Mainly Alpha
# Quaternary_Structure:
Not Available
# Interacting_Partners:
Not Available
# Cofactors:
Not Available
# Metals_Ions:
--Mg2+
# Kcat_Value_[1/min]:
Not Available
# Specific_Activity_[micromol/min/mg]:
Not Available
# Km_Value_[mM]:
1.7 {L-Glu}
1.4 {L-2-aminobutanoate}
1.3 {L-2-aminobutanoate}
0.7 {L-Glu}
0.5 {L-Glu}
0.2 {L-Cys}
0.1 {L-Cys}
0.09 {L-Cys}
0.01 {ATP}
# Substrates:
ATP + L-Cysteine + L-Glutamate
# Products:
ADP + gamma-L-Glutamyl-L-cysteine + H+ + Phosphate
# Specific_Reaction:
ATP + L-Cysteine + L-Glutamate --> ADP + gamma-L-Glutamyl-L-cysteine + H+ + Phosphate
# General_Reaction:
Carboxamide formation; Carboxylic acid amide formation;
# Inhibitor:
--Buthionine sulfoximine --Cystamine --Cysteamine --Glutathione --Hg2+ --Iodoacetamide --NEM --PCMB --Thiocholine disulfide
# Priority:
7.6
# Status:
Selected, Cloned, Work Stopped
# Availability:
Montreal-Kingston Bacterial Structural Genomics Initiative
#END_ECARDFILE
#BEGIN_ECARDFILE
# Entry_ID:
CC0420A.1
# Accession_No.:
UA0000420
# Name:
Valyl-tRNA synthetase
# Alternate_Names:
Valine--tRNA ligase; ValRS
# General_Function:
Translation; Anticodon-binding domain of a subclass of class I aminoacyl-tRNA synthetases; ValRS/IleRS editing domain; Nucleotidylyl transferase
# COG_Function:
Translation, ribosomal structure and biogenesis (code J)
# COG_ID:
COG0525 Valyl-tRNA synthetase (Evalue = 0.0)
# Specific_Function:
Catalyzes the attachment of valine to tRNA(Val). As ValRS can inadvertently accommodate and process structurally similar amino acids such as threonine, to avoid such errors, it has a "posttransfer" editing activity that hydrolyzes mischarged Thr-tRNA(Val) in a tRNA-dependent manner.
# Riley_Gene_Function:
valine tRNA synthetase
# Riley_Cell_Function:
>>>
Information transfer
Protein related
Amino acid-activation
||
>>>
Location of gene products
Cytoplasm
# Gene_Ontology:
>>>
Function: catalytic activity
Function: ligase activity
Function: ligase activity, forming carbon-oxygen bonds
Function: ligase activity, forming aminoacyl-tRNA and related compounds
Function: aminoacyl-tRNA ligase activity
||
>>>
Function: catalytic activity
Function: ligase activity
Function: ligase activity, forming carbon-oxygen bonds
Function: ligase activity, forming aminoacyl-tRNA and related compounds
Function: aminoacyl-tRNA ligase activity
||
>>>
Function: catalytic activity
Function: ligase activity
Function: ligase activity, forming carbon-oxygen bonds
Function: ligase activity, forming aminoacyl-tRNA and related compounds
Function: aminoacyl-tRNA ligase activity
Function: valine-tRNA ligase activity
||
>>>
Process: physiological process
Process: metabolism
Process: nitrogen compound metabolism
Process: amine metabolism
Process: amino acid metabolism
Process: amino acid activation
Process: tRNA aminoacylation
Process: tRNA aminoacylation for protein translation
||
>>>
Process: biosynthesis
Process: cellular biosynthesis
Process: macromolecule biosynthesis
Process: protein biosynthesis
Process: translation
Process: tRNA aminoacylation for protein translation
||
>>>
Process: macromolecule metabolism
Process: macromolecule biosynthesis
Process: protein biosynthesis
Process: translation
Process: tRNA aminoacylation for protein translation
||
>>>
Process: protein metabolism
Process: cellular protein metabolism
Process: protein biosynthesis
Process: translation
Process: tRNA aminoacylation for protein translation
||
>>>
Process: biopolymer metabolism
Process: RNA metabolism
Process: tRNA metabolism
Process: tRNA aminoacylation
Process: tRNA aminoacylation for protein translation
||
>>>
Process: cellular macromolecule metabolism
Process: cellular protein metabolism
Process: protein biosynthesis
Process: translation
Process: tRNA aminoacylation for protein translation
||
>>>
Process: cellular metabolism
Process: organic acid metabolism
Process: carboxylic acid metabolism
Process: amino acid metabolism
Process: amino acid activation
Process: tRNA aminoacylation
Process: tRNA aminoacylation for protein translation
||
>>>
Process: nucleobase, nucleoside, nucleotide and nucleic acid metabolism
Process: RNA metabolism
Process: tRNA metabolism
Process: tRNA aminoacylation
Process: tRNA aminoacylation for protein translation
||
>>>
Process: amino acid and derivative metabolism
Process: amino acid metabolism
Process: amino acid activation
Process: tRNA aminoacylation
Process: tRNA aminoacylation for protein translation
||
>>>
Process: amine metabolism
Process: amino acid metabolism
Process: amino acid activation
Process: tRNA aminoacylation
Process: tRNA aminoacylation for protein translation
||
>>>
Process: cellular biosynthesis
Process: macromolecule biosynthesis
Process: protein biosynthesis
Process: translation
Process: tRNA aminoacylation for protein translation
||
>>>
Process: cellular macromolecule metabolism
Process: cellular protein metabolism
Process: protein biosynthesis
Process: translation
Process: tRNA aminoacylation for protein translation
||
>>>
Process: primary metabolism
Process: nucleobase, nucleoside, nucleotide and nucleic acid metabolism
Process: RNA metabolism
Process: tRNA metabolism
Process: tRNA aminoacylation
Process: tRNA aminoacylation for protein translation
||
>>>
Process: amino acid and derivative metabolism
Process: amino acid metabolism
Process: amino acid activation
Process: tRNA aminoacylation
Process: tRNA aminoacylation for protein translation
||
>>>
Process: protein metabolism
Process: cellular protein metabolism
Process: protein biosynthesis
Process: translation
Process: tRNA aminoacylation for protein translation
||
>>>
Process: cellular physiological process
Process: cellular metabolism
Process: organic acid metabolism
Process: carboxylic acid metabolism
Process: amino acid metabolism
Process: amino acid activation
Process: tRNA aminoacylation
Process: tRNA aminoacylation for protein translation
||
>>>
Process: nucleobase, nucleoside, nucleotide and nucleic acid metabolism
Process: RNA metabolism
Process: tRNA metabolism
Process: tRNA aminoacylation
Process: tRNA aminoacylation for protein translation
||
>>>
Process: amino acid and derivative metabolism
Process: amino acid metabolism
Process: amino acid activation
Process: tRNA aminoacylation
Process: tRNA aminoacylation for protein translation
||
>>>
Process: amine metabolism
Process: amino acid metabolism
Process: amino acid activation
Process: tRNA aminoacylation
Process: tRNA aminoacylation for protein translation
||
>>>
Process: cellular biosynthesis
Process: macromolecule biosynthesis
Process: protein biosynthesis
Process: translation
Process: tRNA aminoacylation for protein translation
||
>>>
Process: cellular macromolecule metabolism
Process: cellular protein metabolism
Process: protein biosynthesis
Process: translation
Process: tRNA aminoacylation for protein translation
||
>>>
Process: cellular process
Process: cellular physiological process
Process: cellular metabolism
Process: organic acid metabolism
Process: carboxylic acid metabolism
Process: amino acid metabolism
Process: amino acid activation
Process: tRNA aminoacylation
Process: tRNA aminoacylation for protein translation
||
>>>
Process: nucleobase, nucleoside, nucleotide and nucleic acid metabolism
Process: RNA metabolism
Process: tRNA metabolism
Process: tRNA aminoacylation
Process: tRNA aminoacylation for protein translation
||
>>>
Process: amino acid and derivative metabolism
Process: amino acid metabolism
Process: amino acid activation
Process: tRNA aminoacylation
Process: tRNA aminoacylation for protein translation
||
>>>
Process: amine metabolism
Process: amino acid metabolism
Process: amino acid activation
Process: tRNA aminoacylation
Process: tRNA aminoacylation for protein translation
||
>>>
Process: cellular biosynthesis
Process: macromolecule biosynthesis
Process: protein biosynthesis
Process: translation
Process: tRNA aminoacylation for protein translation
||
>>>
Process: cellular macromolecule metabolism
Process: cellular protein metabolism
Process: protein biosynthesis
Process: translation
Process: tRNA aminoacylation for protein translation
Process: physiological process
Process: metabolism
Process: nitrogen compound metabolism
Process: amine metabolism
Process: amino acid metabolism
Process: amino acid activation
Process: tRNA aminoacylation
Process: tRNA aminoacylation for protein translation
||
>>>
Process: biosynthesis
Process: cellular biosynthesis
Process: macromolecule biosynthesis
Process: protein biosynthesis
Process: translation
Process: tRNA aminoacylation for protein translation
||
>>>
Process: macromolecule metabolism
Process: macromolecule biosynthesis
Process: protein biosynthesis
Process: translation
Process: tRNA aminoacylation for protein translation
||
>>>
Process: protein metabolism
Process: cellular protein metabolism
Process: protein biosynthesis
Process: translation
Process: tRNA aminoacylation for protein translation
||
>>>
Process: biopolymer metabolism
Process: RNA metabolism
Process: tRNA metabolism
Process: tRNA aminoacylation
Process: tRNA aminoacylation for protein translation
||
>>>
Process: cellular macromolecule metabolism
Process: cellular protein metabolism
Process: protein biosynthesis
Process: translation
Process: tRNA aminoacylation for protein translation
||
>>>
Process: cellular metabolism
Process: organic acid metabolism
Process: carboxylic acid metabolism
Process: amino acid metabolism
Process: amino acid activation
Process: tRNA aminoacylation
Process: tRNA aminoacylation for protein translation
||
>>>
Process: nucleobase, nucleoside, nucleotide and nucleic acid metabolism
Process: RNA metabolism
Process: tRNA metabolism
Process: tRNA aminoacylation
Process: tRNA aminoacylation for protein translation
||
>>>
Process: amino acid and derivative metabolism
Process: amino acid metabolism
Process: amino acid activation
Process: tRNA aminoacylation
Process: tRNA aminoacylation for protein translation
||
>>>
Process: amine metabolism
Process: amino acid metabolism
Process: amino acid activation
Process: tRNA aminoacylation
Process: tRNA aminoacylation for protein translation
||
>>>
Process: cellular biosynthesis
Process: macromolecule biosynthesis
Process: protein biosynthesis
Process: translation
Process: tRNA aminoacylation for protein translation
||
>>>
Process: cellular macromolecule metabolism
Process: cellular protein metabolism
Process: protein biosynthesis
Process: translation
Process: tRNA aminoacylation for protein translation
||
>>>
Process: primary metabolism
Process: nucleobase, nucleoside, nucleotide and nucleic acid metabolism
Process: RNA metabolism
Process: tRNA metabolism
Process: tRNA aminoacylation
Process: tRNA aminoacylation for protein translation
||
>>>
Process: amino acid and derivative metabolism
Process: amino acid metabolism
Process: amino acid activation
Process: tRNA aminoacylation
Process: tRNA aminoacylation for protein translation
||
>>>
Process: protein metabolism
Process: cellular protein metabolism
Process: protein biosynthesis
Process: translation
Process: tRNA aminoacylation for protein translation
||
>>>
Process: cellular physiological process
Process: cellular metabolism
Process: organic acid metabolism
Process: carboxylic acid metabolism
Process: amino acid metabolism
Process: amino acid activation
Process: tRNA aminoacylation
Process: tRNA aminoacylation for protein translation
||
>>>
Process: nucleobase, nucleoside, nucleotide and nucleic acid metabolism
Process: RNA metabolism
Process: tRNA metabolism
Process: tRNA aminoacylation
Process: tRNA aminoacylation for protein translation
||
>>>
Process: amino acid and derivative metabolism
Process: amino acid metabolism
Process: amino acid activation
Process: tRNA aminoacylation
Process: tRNA aminoacylation for protein translation
||
>>>
Process: amine metabolism
Process: amino acid metabolism
Process: amino acid activation
Process: tRNA aminoacylation
Process: tRNA aminoacylation for protein translation
||
>>>
Process: cellular biosynthesis
Process: macromolecule biosynthesis
Process: protein biosynthesis
Process: translation
Process: tRNA aminoacylation for protein translation
||
>>>
Process: cellular macromolecule metabolism
Process: cellular protein metabolism
Process: protein biosynthesis
Process: translation
Process: tRNA aminoacylation for protein translation
||
>>>
Process: cellular process
Process: cellular physiological process
Process: cellular metabolism
Process: organic acid metabolism
Process: carboxylic acid metabolism
Process: amino acid metabolism
Process: amino acid activation
Process: tRNA aminoacylation
Process: tRNA aminoacylation for protein translation
||
>>>
Process: nucleobase, nucleoside, nucleotide and nucleic acid metabolism
Process: RNA metabolism
Process: tRNA metabolism
Process: tRNA aminoacylation
Process: tRNA aminoacylation for protein translation
||
>>>
Process: amino acid and derivative metabolism
Process: amino acid metabolism
Process: amino acid activation
Process: tRNA aminoacylation
Process: tRNA aminoacylation for protein translation
||
>>>
Process: amine metabolism
Process: amino acid metabolism
Process: amino acid activation
Process: tRNA aminoacylation
Process: tRNA aminoacylation for protein translation
||
>>>
Process: cellular biosynthesis
Process: macromolecule biosynthesis
Process: protein biosynthesis
Process: translation
Process: tRNA aminoacylation for protein translation
||
>>>
Process: cellular macromolecule metabolism
Process: cellular protein metabolism
Process: protein biosynthesis
Process: translation
Process: tRNA aminoacylation for protein translation
Process: physiological process
Process: metabolism
Process: nitrogen compound metabolism
Process: amine metabolism
Process: amino acid metabolism
Process: amino acid activation
Process: tRNA aminoacylation
Process: tRNA aminoacylation for protein translation
Process: valyl-tRNA aminoacylation
||
>>>
Process: biosynthesis
Process: cellular biosynthesis
Process: macromolecule biosynthesis
Process: protein biosynthesis
Process: translation
Process: tRNA aminoacylation for protein translation
Process: valyl-tRNA aminoacylation
||
>>>
Process: macromolecule metabolism
Process: macromolecule biosynthesis
Process: protein biosynthesis
Process: translation
Process: tRNA aminoacylation for protein translation
Process: valyl-tRNA aminoacylation
||
>>>
Process: protein metabolism
Process: cellular protein metabolism
Process: protein biosynthesis
Process: translation
Process: tRNA aminoacylation for protein translation
Process: valyl-tRNA aminoacylation
||
>>>
Process: biopolymer metabolism
Process: RNA metabolism
Process: tRNA metabolism
Process: tRNA aminoacylation
Process: tRNA aminoacylation for protein translation
Process: valyl-tRNA aminoacylation
||
>>>
Process: cellular macromolecule metabolism
Process: cellular protein metabolism
Process: protein biosynthesis
Process: translation
Process: tRNA aminoacylation for protein translation
Process: valyl-tRNA aminoacylation
||
>>>
Process: cellular metabolism
Process: organic acid metabolism
Process: carboxylic acid metabolism
Process: amino acid metabolism
Process: amino acid activation
Process: tRNA aminoacylation
Process: tRNA aminoacylation for protein translation
Process: valyl-tRNA aminoacylation
||
>>>
Process: nucleobase, nucleoside, nucleotide and nucleic acid metabolism
Process: RNA metabolism
Process: tRNA metabolism
Process: tRNA aminoacylation
Process: tRNA aminoacylation for protein translation
Process: valyl-tRNA aminoacylation
||
>>>
Process: amino acid and derivative metabolism
Process: amino acid metabolism
Process: amino acid activation
Process: tRNA aminoacylation
Process: tRNA aminoacylation for protein translation
Process: valyl-tRNA aminoacylation
||
>>>
Process: amine metabolism
Process: amino acid metabolism
Process: amino acid activation
Process: tRNA aminoacylation
Process: tRNA aminoacylation for protein translation
Process: valyl-tRNA aminoacylation
||
>>>
Process: cellular biosynthesis
Process: macromolecule biosynthesis
Process: protein biosynthesis
Process: translation
Process: tRNA aminoacylation for protein translation
Process: valyl-tRNA aminoacylation
||
>>>
Process: cellular macromolecule metabolism
Process: cellular protein metabolism
Process: protein biosynthesis
Process: translation
Process: tRNA aminoacylation for protein translation
Process: valyl-tRNA aminoacylation
||
>>>
Process: primary metabolism
Process: nucleobase, nucleoside, nucleotide and nucleic acid metabolism
Process: RNA metabolism
Process: tRNA metabolism
Process: tRNA aminoacylation
Process: tRNA aminoacylation for protein translation
Process: valyl-tRNA aminoacylation
||
>>>
Process: amino acid and derivative metabolism
Process: amino acid metabolism
Process: amino acid activation
Process: tRNA aminoacylation
Process: tRNA aminoacylation for protein translation
Process: valyl-tRNA aminoacylation
||
>>>
Process: protein metabolism
Process: cellular protein metabolism
Process: protein biosynthesis
Process: translation
Process: tRNA aminoacylation for protein translation
Process: valyl-tRNA aminoacylation
||
>>>
Process: cellular physiological process
Process: cellular metabolism
Process: organic acid metabolism
Process: carboxylic acid metabolism
Process: amino acid metabolism
Process: amino acid activation
Process: tRNA aminoacylation
Process: tRNA aminoacylation for protein translation
Process: valyl-tRNA aminoacylation
||
>>>
Process: nucleobase, nucleoside, nucleotide and nucleic acid metabolism
Process: RNA metabolism
Process: tRNA metabolism
Process: tRNA aminoacylation
Process: tRNA aminoacylation for protein translation
Process: valyl-tRNA aminoacylation
||
>>>
Process: amino acid and derivative metabolism
Process: amino acid metabolism
Process: amino acid activation
Process: tRNA aminoacylation
Process: tRNA aminoacylation for protein translation
Process: valyl-tRNA aminoacylation
||
>>>
Process: amine metabolism
Process: amino acid metabolism
Process: amino acid activation
Process: tRNA aminoacylation
Process: tRNA aminoacylation for protein translation
Process: valyl-tRNA aminoacylation
||
>>>
Process: cellular biosynthesis
Process: macromolecule biosynthesis
Process: protein biosynthesis
Process: translation
Process: tRNA aminoacylation for protein translation
Process: valyl-tRNA aminoacylation
||
>>>
Process: cellular macromolecule metabolism
Process: cellular protein metabolism
Process: protein biosynthesis
Process: translation
Process: tRNA aminoacylation for protein translation
Process: valyl-tRNA aminoacylation
||
>>>
Process: cellular process
Process: cellular physiological process
Process: cellular metabolism
Process: organic acid metabolism
Process: carboxylic acid metabolism
Process: amino acid metabolism
Process: amino acid activation
Process: tRNA aminoacylation
Process: tRNA aminoacylation for protein translation
Process: valyl-tRNA aminoacylation
||
>>>
Process: nucleobase, nucleoside, nucleotide and nucleic acid metabolism
Process: RNA metabolism
Process: tRNA metabolism
Process: tRNA aminoacylation
Process: tRNA aminoacylation for protein translation
Process: valyl-tRNA aminoacylation
||
>>>
Process: amino acid and derivative metabolism
Process: amino acid metabolism
Process: amino acid activation
Process: tRNA aminoacylation
Process: tRNA aminoacylation for protein translation
Process: valyl-tRNA aminoacylation
||
>>>
Process: amine metabolism
Process: amino acid metabolism
Process: amino acid activation
Process: tRNA aminoacylation
Process: tRNA aminoacylation for protein translation
Process: valyl-tRNA aminoacylation
||
>>>
Process: cellular biosynthesis
Process: macromolecule biosynthesis
Process: protein biosynthesis
Process: translation
Process: tRNA aminoacylation for protein translation
Process: valyl-tRNA aminoacylation
||
>>>
Process: cellular macromolecule metabolism
Process: cellular protein metabolism
Process: protein biosynthesis
Process: translation
Process: tRNA aminoacylation for protein translation
Process: valyl-tRNA aminoacylation
||
>>>
Component: Not Available
# Location:
Cytoplasm
# Blattner_Number:
b4258
# Gene_Sequence:
ATGGAAAAGACATATAACCCACAAGATATCGAACAGCCGCTTTACGAGCACTGGGAAAAGCAGGGCTACT
TTAAGCCTAATGGCGATGAAAGCCAGGAAAGTTTCTGCATCATGATCCCGCCGCCGAACGTCACCGGCAG
TTTGCATATGGGTCACGCCTTCCAGCAAACCATCATGGATACCATGATCCGCTATCAGCGCATGCAGGGC
AAAAACACCCTGTGGCAGGTCGGTACTGACCACGCCGGGATCGCTACCCAGATGGTCGTTGAGCGCAAGA
TTGCCGCAGAAGAAGGTAAAACCCGTCACGACTACGGCCGCGAAGCTTTCATCGACAAAATCTGGGAATG
GAAAGCGGAATCTGGCGGCACCATTACCCGTCAGATGCGCCGTCTCGGCAACTCCGTCGACTGGGAGCGT
GAACGCTTCACCATGGACGAAGGCCTGTCCAATGCGGTGAAAGAAGTTTTCGTTCGTCTGTATAAAGAAG
ACCTGATTTACCGTGGCAAACGCCTGGTAAACTGGGATCCGAAACTGCGCACCGCTATCTCTGACCTGGA
AGTCGAAAACCGCGAATCGAAAGGTTCGATGTGGCACATCCGCTATCCGCTGGCTGACGGTGCGAAAACC
GCAGACGGTAAAGATTATCTGGTGGTCGCGACTACCCGTCCAGAAACCCTGCTGGGCGATACTGGCGTAG
CCGTTAACCCGGAAGATCCGCGTTACAAAGATCTGATTGGCAAATATGTCATTCTGCCGCTGGTTAACCG
TCGTATTCCGATCGTTGGCGACGAACACGCCGACATGGAAAAAGGCACCGGCTGCGTGAAAATCACTCCG
GCGCACGACTTTAACGACTATGAAGTGGGTAAACGTCACGCCCTGCCGATGATCAACATCCTGACCTTTG
ACGGCGATATCCGTGAAAGCGCCCAGGTGTTCGATACCAAAGGTAACGAATCTGACGTTTATTCCAGCGA
AATCCCTGCAGAGTTCCAGAAACTGGAGCGTTTTGCTGCACGTAAAGCAGTCGTTGCCGCAGTTGACGCG
CTTGGCCTGCTGGAAGAAATTAAACCGCACGACCTGACCGTTCCTTACGGCGACCGTGGCGGCGTAGTTA
TCGAACCAATGCTGACCGACCAGTGGTACGTGCGTGCCGATGTCCTGGCGAAACCGGCGGTTGAAGCGGT
TGAGAACGGCGACATTCAGTTCGTACCGAAGCAGTACGAAAACATGTACTTCTCCTGGATGCGCGATATT
CAGGACTGGTGTATCTCTCGTCAGTTGTGGTGGGGTCACCGTATCCCGGCATGGTATGACGAAGCGGGTA
ACGTTTATGTTGGCCGCAACGAAGACGAAGTGCGTAAAGAAAATAACCTCGGTGCTGATGTTGTCCTGCG
TCAGGACGAAGACGTTCTCGATACCTGGTTCTCTTCTGCGCTGTGGACCTTCTCTACCCTTGGCTGGCCG
GAAAATACCGACGCCCTGCGTCAGTTCCACCCAACCAGCGTGATGGTATCTGGTTTCGACATCATTTTCT
TCTGGATTGCCCGCATGATCATGATGACCATGCACTTCATCAAAGATGAAAATGGCAAACCGCAGGTGCC
GTTCCACACCGTTTACATGACCGGCCTGATTCGTGATGACGAAGGCCAGAAGATGTCCAAATCCAAGGGT
AACGTTATCGACCCACTGGATATGGTTGACGGTATTTCGCTGCCAGAACTGCTGGAAAAACGTACCGGCA
ATATGATGCAGCCGCAGCTGGCGGACAAAATCCGTAAGCGCACCGAGAAGCAGTTCCCGAACGGTATTGA
GCCGCACGGTACTGACGCGCTGCGCTTCACCCTGGCGGCGCTGGCGTCTACCGGTCGTGACATCAACTGG
GATATGAAGCGTCTGGAAGGTTACCGTAACTTCTGTAACAAGCTGTGGAACGCCAGCCGCTTTGTGCTGA
TGAACACAGAAGGTCAGGATTGCGGCTTCAACGGCGGCGAAATGACGCTGTCGCTGGCGGACCGCTGGAT
TCTGGCGGAGTTCAACCAGACCATCAAAGCGTACCGCGAAGCGCTGGACAGCTTCCGCTTCGATATCGCC
GCAGGCATTCTGTATGAGTTCACCTGGAACCAGTTCTGTGACTGGTATCTCGAGCTGACCAAGCCGGTAA
TGAACGGTGGCACCGAAGCAGAACTGCGCGGTACTCGCCATACGCTGGTGACTGTACTGGAAGGTCTGCT
GCGCCTCGCGCATCCGATCATTCCGTTCATCACCGAAACCATCTGGCAGCGTGTGAAAGTACTTTGCGGT
ATCACTGCCGACACCATCATGCTGCAGCCGTTCCCGCAGTACGATGCATCTCAGGTTGATGAAGCCGCAC
TGGCCGACACCGAATGGCTGAAACAGGCGATCGTTGCGGTACGTAACATCCGTGCAGAAATGAACATCGC
GCCGGGCAAACCGCTGGAGCTGCTGCTGCGTGGTTGCAGCGCGGATGCAGAACGTCGCGTAAATGAAAAC
CGTGGCTTCCTGCAAACCCTGGCGCGTCTGGAAAGTATCACCGTGCTGCCTGCCGATGACAAAGGTCCGG
TTTCCGTTACGAAGATCATCGACGGTGCAGAGCTGCTGATCCCGATGGCTGGCCTCATCAACAAAGAAGA
TGAGCTGGCGCGTCTGGCGAAAGAAGTGGCGAAGATTGAAGGTGAAATCAGCCGTATCGAGAACAAACTG
GCGAACGAAGGCTTTGTCGCCCGCGCACCGGAAGCGGTCATCGCGAAAGAGCGTGAGAAGCTGGAAGGCT
ATGCGGAAGCGAAAGCGAAACTGATTGAACAGCAGGCTGTTATCGCCGCGCTGTAA
# Upstream_100_bases:
ACTTCGTTCCTTATGAAGATTCTCTGAAACAACTGGCGCGCGAACGCTATAAAGCCTACCGCGTGGCTGG
TTTCAACCTGAATACGGCAACCTGGAAATA
# Blattner_No_Ontology:
Translation, post-translational modification
# Gene_Position:
4479005-4481860 (Counter Clockwise)
# Centisome_Position:
96.599
# Gene_Name:
valS
# GC_Content:
54.59%
# Metabolic_Importance:
Essential
# Preceding_Gene:
yjgN
# Following_Gene:
holC
# Operon_Status:
Yes
# Operon_Components:
valS_holC Ref: RegulonDB http://kinich.cifn.unam.mx:8850/db/regulondb_cgi.query_simple?v_organism=ECK12&v_table=3&v_name=valS
# Paralogues:
b0026 (ileS) 21;
# Copy Number:
120 Molecules/Cell In: Growth-Phase, Minimal-Media (E. Coli Proteins From A Sonicated Cell Extract).
800 Molecules/Cell In: Glucose minimal media
Ref: Neidhardt et al., Encyclopedia of E. coli and Salmonella, 1997
# RNA_Copy_No.:
Log phase (2max): 25.68
Stationary phase (2max): 0.8
Ref: Nature Biotech., 18, 1262-68, Dec. 2000 (PMID=11101804)
# Genbank_ID_(DNA):
G1790708
# Genbank_ID_(Protein):
AAC77215.1
# SWISS_PROT_(AC_&_ID):
$ SYV_ECOLI (P07118)
# 2D_Gel_Image:
Not Available
# Other_Databases:
- ECO2DBASE: E106.0
- ECOCYC: EG11067
- EcoGene: EG11067
- EMBL: X05891
- InterPro: IPR013155; IPR002300; IPR001412; IPR002303; IPR010978; IPR009080; IPR009008
- Pfam: PF08264; PF00133
- PIR: E65238
- PRINTS: PR00986
- PROSITE: PS00178
# Pfam_Domain/Function:
PF00133 tRNA synthetases class I (I, L, M and V)
# Homologues:
Organism=Homo sapiens, GI5454158, Length=1264, Positives=55%, Blast Score=674
Organism=Homo sapiens, GI42657615, Length=1063, Positives=53%, Blast Score=567
Organism=Homo sapiens, GI46852147, Length=1012, Positives=37%, Blast Score=153
Organism=Homo sapiens, GI7770072, Length=1262, Positives=38%, Blast Score=148
Organism=Homo sapiens, GI4504555, Length=1262, Positives=38%, Blast Score=148
Organism=Homo sapiens, GI7661872, Length=903, Positives=47%, Blast Score=80.1
Organism=Caenorhabditis elegans, GI17510661, Length=1050, Positives=54%, Blast Score=632
Organism=Caenorhabditis elegans, GI17566738, Length=933, Positives=51%, Blast Score=439
Organism=Caenorhabditis elegans, GI17541896, Length=1141, Positives=37%, Blast Score=162
Organism=Caenorhabditis elegans, GI17505707, Length=1131, Positives=37%, Blast Score=137
Organism=Saccharomyces cerevisiae, GI6321531, Length=1104, Positives=56%, Blast Score=668
Organism=Saccharomyces cerevisiae, GI6319395, Length=1072, Positives=37%, Blast Score=144
Organism=Saccharomyces cerevisiae, GI6325217, Length=1002, Positives=38%, Blast Score=140
Organism=Saccharomyces cerevisiae, GI6323414, Length=894, Positives=47%, Blast Score=64.3
Organism=Mus musculus, GI34328204, Length=1263, Positives=56%, Blast Score=686
Organism=Mus musculus, GI40254283, Length=1059, Positives=51%, Blast Score=556
Organism=Mus musculus, GI38490690, Length=1012, Positives=37%, Blast Score=155
Organism=Mus musculus, GI29789383, Length=1262, Positives=38%, Blast Score=148
Organism=Mus musculus, GI23346617, Length=902, Positives=47%, Blast Score=75.9
Organism=Drosophila melanogaster, GI17864482, Length=1049, Positives=54%, Blast Score=647
Organism=Drosophila melanogaster, GI24653289, Length=1049, Positives=54%, Blast Score=647
Organism=Drosophila melanogaster, GI21355675, Length=994, Positives=51%, Blast Score=523
Organism=Drosophila melanogaster, GI24665024, Length=890, Positives=38%, Blast Score=139
Organism=Drosophila melanogaster, GI24668547, Length=1229, Positives=36%, Blast Score=119
Organism=Drosophila melanogaster, GI24668543, Length=1229, Positives=36%, Blast Score=119
Organism=Drosophila melanogaster, GI28574730, Length=1229, Positives=36%, Blast Score=119
Organism=Drosophila melanogaster, GI21355409, Length=869, Positives=48%, Blast Score=92.8
# Similarity:
Belongs to the class-I aminoacyl-tRNA synthetase family. ValS type 1 subfamily.
# EC_Number:
6.1.1.9
# No._of_Amino_Acids:
951 (Translated Protein)
951 (Mature Protein)
# Molecular_Weight:
108194 108194
# Theoretical_pI:
4.98
# Theoretical_pI (Mature):
4.98
# Sequence:
// MEKTYNPQDIEQPLYEHWEKQGYFKPNGDESQESFCIMIPPPNVTGSLHMGHAFQQTIMD
// TMIRYQRMQGKNTLWQVGTDHAGIATQMVVERKIAAEEGKTRHDYGREAFIDKIWEWKAE
// SGGTITRQMRRLGNSVDWERERFTMDEGLSNAVKEVFVRLYKEDLIYRGKRLVNWDPKLR
// TAISDLEVENRESKGSMWHIRYPLADGAKTADGKDYLVVATTRPETLLGDTGVAVNPEDP
// RYKDLIGKYVILPLVNRRIPIVGDEHADMEKGTGCVKITPAHDFNDYEVGKRHALPMINI
// LTFDGDIRESAQVFDTKGNESDVYSSEIPAEFQKLERFAARKAVVAAVDALGLLEEIKPH
// DLTVPYGDRGGVVIEPMLTDQWYVRADVLAKPAVEAVENGDIQFVPKQYENMYFSWMRDI
// QDWCISRQLWWGHRIPAWYDEAGNVYVGRNEDEVRKENNLGADVVLRQDEDVLDTWFSSA
// LWTFSTLGWPENTDALRQFHPTSVMVSGFDIIFFWIARMIMMTMHFIKDENGKPQVPFHT
// VYMTGLIRDDEGQKMSKSKGNVIDPLDMVDGISLPELLEKRTGNMMQPQLADKIRKRTEK
// QFPNGIEPHGTDALRFTLAALASTGRDINWDMKRLEGYRNFCNKLWNASRFVLMNTEGQD
// CGFNGGEMTLSLADRWILAEFNQTIKAYREALDSFRFDIAAGILYEFTWNQFCDWYLELT
// KPVMNGGTEAELRGTRHTLVTVLEGLLRLAHPIIPFITETIWQRVKVLCGITADTIMLQP
// FPQYDASQVDEAALADTEWLKQAIVAVRNIRAEMNIAPGKPLELLLRGCSADAERRVNEN
// RGFLQTLARLESITVLPADDKGPVSVTKIIDGAELLIPMAGLINKEDELARLAKEVAKIE
// GEISRIENKLANEGFVARAPEAVIAKEREKLEGYAEAKAKLIEQQAVIAAL
// /\
// MEKTYNPQDIEQPLYEHWEKQGYFKPNGDESQESFCIMIPPPNVTGSLHMGHAFQQTIMD
// TMIRYQRMQGKNTLWQVGTDHAGIATQMVVERKIAAEEGKTRHDYGREAFIDKIWEWKAE
// SGGTITRQMRRLGNSVDWERERFTMDEGLSNAVKEVFVRLYKEDLIYRGKRLVNWDPKLR
// TAISDLEVENRESKGSMWHIRYPLADGAKTADGKDYLVVATTRPETLLGDTGVAVNPEDP
// RYKDLIGKYVILPLVNRRIPIVGDEHADMEKGTGCVKITPAHDFNDYEVGKRHALPMINI
// LTFDGDIRESAQVFDTKGNESDVYSSEIPAEFQKLERFAARKAVVAAVDALGLLEEIKPH
// DLTVPYGDRGGVVIEPMLTDQWYVRADVLAKPAVEAVENGDIQFVPKQYENMYFSWMRDI
// QDWCISRQLWWGHRIPAWYDEAGNVYVGRNEDEVRKENNLGADVVLRQDEDVLDTWFSSA
// LWTFSTLGWPENTDALRQFHPTSVMVSGFDIIFFWIARMIMMTMHFIKDENGKPQVPFHT
// VYMTGLIRDDEGQKMSKSKGNVIDPLDMVDGISLPELLEKRTGNMMQPQLADKIRKRTEK
// QFPNGIEPHGTDALRFTLAALASTGRDINWDMKRLEGYRNFCNKLWNASRFVLMNTEGQD
// CGFNGGEMTLSLADRWILAEFNQTIKAYREALDSFRFDIAAGILYEFTWNQFCDWYLELT
// KPVMNGGTEAELRGTRHTLVTVLEGLLRLAHPIIPFITETIWQRVKVLCGITADTIMLQP
// FPQYDASQVDEAALADTEWLKQAIVAVRNIRAEMNIAPGKPLELLLRGCSADAERRVNEN
// RGFLQTLARLESITVLPADDKGPVSVTKIIDGAELLIPMAGLINKEDELARLAKEVAKIE
// GEISRIENKLANEGFVARAPEAVIAKEREKLEGYAEAKAKLIEQQAVIAAL
# PROSITE_Motif:
AA_TRNA_LIGASE_I; PATTERN. PS00178; Aminoacyl-transfer RNA synthetases class-I signature. P-x(0,2)-[GSTAN]-[DENQGAPK]-x-[LIVMFP]-[HT]-[LIVMYAC]-G-[HNTG]- PA [LIVMFYSTAGPC]. PDOC00161; //
# Important_Sites:
Binding Site 557 557 ATP (By Similarity)
# Transmembrane:
Not Available
# Cys/Met_Content:
0.8 %Cys (Translated Protein)
3.4 %Met (Translated Protein)
4.2 %Cys+Met (Translated Protein)
0.8 %Cys (Mature Protein)
3.4 %Met (Mature Protein)
4.2 %Cys+Met (Mature Protein)
# Secondary_Structure_(PDB):
MDLPKAYDPKSVEPKWAEKWAKNPFVANPKSGKPPFVIFMPPPNVTGSLHM
CCCCCCCCHHHCHHHHHHHHHHCCCCCCCCCCEEEEEEEECEEEECCCCCH
GHALDNSLQDALIRYKRMRGFEAVWLPGTDHAGIATQVVVERLLLKEGKTR
HHHHHHHHHHHHHHHHHHHCEEEEEEEEEECCCHHHHHHHHHHHHHCCCCC
HDLGREKFLERVWQWKEESGGTILKQLKRLGASADWSREAFTMDEKRSRAV
CCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCEEEECHHHHHHHH
RYAFSRYYHEGLAYRAPRLVNWCPRCETTLSDLEVETEPTPGKLYTLRYEV
HHHHHHHHHHCEEEEEEEEEEEECCCCEEECCCCEEEEEEEEEEEEEEEEE
EGGGFIEIATVRPETVFADQAIAVHPEDERYRHLLGKRARIPLTEVWIPIL
ECCEEEEEEECCCCCCCCCEEEEEECCCCCCCCCCCCEEEECCCCEEEEEE
ADPAVEKDFGTGALKVTPAHDPLDYEIGERHGLKPVSVINLEGRMEGERVP
EECCCCCCCCCCEEEEECCCCHHHHHHHHCCCCCCCCCCCCCCEEECCCCC
EALRGLDRFEARRKAVELFREAGHLVKEEDYTIALATCSRCGTPIEYAIFP
CCCCCCCCHHHHHHHHHHHHCCCEEEEEEEEEEEEEEEECCCEEEEEEEEE
QWWLRMRPLAEEVLKGLRRGDIAFVPERWKKVNMDWLENVKDWNISRQLWW
EEEEEHHHHHHHHHHHHHHCCEEEECCHHHHHHHHHHHCCEEEEEEECCCC
GHQIPAWYCEDCQAVNVPRPERYLEDPTSCEACGSPRLKRDEDVFDTWFSS
EEECCEEEEECCCEEEECCCCCCCCCCCCCCCCCCCEEEEECEEEEHHHHH
ALWPLSTLGWPEETEDLKAFYPGDVLVTGYDILFLWVSRMEVSGYHFMGER
HCCCCCCCCCCCCCHHHHHCCEEEEEEECCCCCCCCHHHHHHHHHHCCCCC
PFKTVLLHGLVLDEKGQKMSKSKGNVIDPLEMVERYGADALRFALIYLATG
EEEEEEEEEEEEECCCCEEECCCCEEECHHHHHHHCCHHHHHHHHHHHHCC
GQDIRLDLRWLEMARNFANKLYNAARFVLLSREGFQAKEDTPTLADRFMRS
CEEEEECHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCEEECCHHHHHHHH
RLSRGVEEITALYEALDLAQAAREVYELVWSEFCDWYLEAAKPALKAGNAH
HHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHCCHH
TLRTLEEVLAVLLKLLHPMMPFLTSELYQALTGKEELALEAWPEPGGRDEE
HHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHCCCCCCCCEEECCCCCCHH
AERAFEALKQAVTAVRALKAEAGLPPAQEVRVYLEGETAPVEENLEVFRFL
HHHHHHHHHHHHHHHHHHHHHHCCCCCCEEEEEEECCHHHHHHCHHHHHHH
SRADLLPERPAKALVKAMPRVTARMPLEGLLDVEEWRRRQEKRLKELLALA
HCEEEECCCCCCEEEEECCEEEEEEECCCCCHHHHHHHHHHHHHHHHHHHH
ERSQRKLASPGFREKAPKEVVEAEEARLKENLEQAERIREALSQIG
HHHHHHCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCC
# PDB_Accession:
& Model Based on 1IVS (1-951)
# Resolution:
Not Available
# Structure_CLASS:
Alpha Beta
# Quaternary_Structure:
monomer
# Interacting_Partners:
Not Available
# Cofactors:
Not Available
# Metals_Ions:
Not Available
# Kcat_Value_[1/min]:
Not Available
# Specific_Activity_[micromol/min/mg]:
Not Available
# Km_Value_[mM]:
12 {DL-threonine}
3.7 {DL-2-aminobutyrate}
1 {DL-allo-2-amino-3-chlorobutyrate}
0.33 {DL-2-amino-3-chlorobutyrate}
0.1 {@VALI.txt*valine!}
# Substrates:
ATP + @VALI01.txt*L-valine! + tRNAVal
# Products:
AMP + diphosphate + L-valyl-tRNAVal
# Specific_Reaction:
ATP + @VALI01.txt*L-valine! + tRNAVal = AMP + diphosphate + L-valyl-tRNAVal
# General_Reaction:
Aminoacylation;Esterification;
# Inhibitor:
--D-allo-2-Amino-3-chlorobutyrate --DL-2-Amino-3-chlorobutyrate --Pyridoxal 5'-triphospho-5'-adenosine
# Priority:
1.0
# Status:
Not Available
# Availability:
Not Available
#END_ECARDFILE
#BEGIN_ECARDFILE
# Entry_ID:
CC1982A.1
# Accession_No.:
UA0001982
# Name:
Hypothetical protein ydbA
# Alternate_Names:
Not Available
# General_Function:
Unknown
# COG_Function:
Not Available
# COG_ID:
Not Available
# Specific_Function:
Not Available
# Riley_Gene_Function:
split CDS, fragment 1
split CDS, fragment 2
# Riley_Cell_Function:
>>>
Not Available
# Gene_Ontology:
>>>
Function: Not Available
||
>>>
Process: Not Available
||
>>>
Component: Not Available
# Location:
Not Available
# Blattner_Number:
b1401/b1405
# Gene_Sequence:
ATGCAAAGGAAAACTCTATTGTCGGCCTGTATTGCATTAGCTCTGAGTGGTCAGGGTTGGGCGGCAGATA
TCACAGAGGTAGAAACCACCACAGGTGAAAAGAAAAATACCAATGTGACTTGTCCGGCAGACCCAGGAAA
ACTCAGTCCGGAAGAGCTTAAACGCTTACCCTCTGAATGCTCTCCTTTAGTCGAACAAAACCTGATGCCA
TGGCTTTCCACAGGCGCTGCTGCGTTAATCACGGCCTTAGCCGTAGTGGAACTAAACGACGATGATGATC
ATCATCATCGCAACAATTCTCCACTCCCACCGACACCCCCTGATGATGAATCAGACGACACTCCAGTTCC
CCCAACTCCTGGCGGAGATGAGATAATACCGGACGATCCGGATGATACGCCTACACCTCCCAAACCGGTT
TCGTTTAATAATGACGTTATTCTCGATAAAACAGAAAAAACGTTAACTATTCGCGATTCAGTTTTTACTT
ATACCGAGAATGCTGACGGGACTATATCTCTGCAAGATAGCAATGGTCGTAAGGCAACGATTAATCTTTG
GCAGATTGATGAAGCGAATAACACTGTTGCCCTTGAAGGGGTGAGCGCAGATGGCGCAACGAAGTGGCAA
TATAATCACAACGGTGAGCTTGTTATTACGGGTGATAATGCCACAGTAAACAACAATGGCAAAACCACCG
TTGACGGTAAAGATTCCACCGGTACGGAAATCAACGGTAATAACGGGAAAGTGATTCAGGACGGCGATCT
GGATGTCAGCGGCGGCGGTCACGGTATTGATATCACCGGTGACAGCGCGACGGTGGATAACAAGGGCACC
ATGACCGTCACCGATCCGGAGTCCATGGGTATCCAGATCGACGGTGACAAGGCCATCGTCAATAACGAAG
GCGAGAGCACCATCACCAACGGTGGCACCGGCACCCAGATTAATGGTGATGACGCCACGGCAAACAACAA
CGGCAAAACCACCGTTGACGGCAAGGATTCCACCGGTACGGAAATCAACGGTAATAACGGAAAAGTTATT
CAGGACGGCGATCTGGATGTCAGCGGCGGCGGTCACGGTATTGATATCACCGGCGACAGCGCAACGGTGG
ATAACAAGGGCACCATGACCGTCACCGATCCGGAGTCCATCGGTATCCAGGTTGACGGCGACCAGGCGGT
TGTTAACAACGAAGGCGAGAGCGCCATCACCAACGGTGGCACCGGCACGCAGATTAACGGTGATGACGCC
ACGGCAAACAACAACGGCAAAACCACCGTTGACGGCAAGGATTCCACCGGTACGGAAATTGCTGGCAATA
ACGGGAAGGTGATTCAGGACGGCGATCTGGATGTCAGCGGCGGCGGTCACGGTATTGATATCACCGGCGA
CAGCGCAACGGTGGATAACAAGGGCACCATGACCGTCACCGATCCGGAGTCCATCGGTATCCAGATTGAC
GGCGACCAGGCCATCGTCAATAACGAAGGCGAGAGCACTATCACCAATGGCGGCACCGGCACTCAGATCA
ACGGTAACGACGCCACCGCGAATAACAGTGGAAAAACCACTGTTGATGGAAAAGATTCCACGGGTACCAA
AATCGCGGGCAATATCGGCATTGTAAATCTGGATGGTAGCCTGACTGTTACAGGCGGTGCGCATGGTGTT
GAGAACATTGGTGACAACGGCACGGTTAACAACAAAGGAGATATTGTTGTTTCCGATACTGGATCGATTG
GCGTGCTCATCAACGGTGAGGGGGCAACAGTATCCAATACGGGTGATGTTAACGTTAGCAATGAAGCGAC
AGGGTTCAGCATCACAACCAACAGTGGGAAGGTTTCGCTGGCAGGCAGTATGCAGGTTGGCGATTTCTCG
ACCGGGGTAGATCTTAATGGCAACAATAACAGCGTGACGCTGGCGGCAAAAGATCTAAAAGTGGTCGGGC
AGAAAGCGACGGGCATAAACGTTTCTGGCGATGCGAATACAGTGAATATCACTGGTAACGTTCTGGTTGA
TAAGGATAAAACCGCAGACAATGCGGCGGAATATTTCTTCGATCCATCCGTGGGTATCAACGTTTACGGC
AGTGATAATAACGTGACGCTGGATGGAAAGTTAACTGTTGTATCAGACAGTGAGGTTACTTCTCGTCAGA
GTAATTTATTTGATGGCAGCGCAGAGAAAACGTCAGGTCTGGTTGTGATTGGCGATGGCAATACCGTTAA
TATGAATGGTGGACTTGAACTGATTGGAGAGAAAAACGCGCTTGCAGATGGGTCGCAGGTTACTTCCTTG
CGCACAGGATATAGTTATACCAGCGTTATTGTCGTTAGTGGTGAGTCGTCGGTATATCTGAATGGAGATA
CGACAATCAGCGGAGAATTCCCTCTGGGGTTTGCCGGGGTTATTCGGGTACAGGATAAAGCTTTGCTGGA
AATTGGCAGTGGCGCTACGCTAACAATGCAGGATATTGACAGTTTTGAACATCATGGGACAAGAACCCTG
GATTTGCCCCTATATTTCCAGACATCTGTTATCACTTAACCCATTACAAGCCCGCTGCCGCAGATATTCC
CGTGGCGAGCGATAACCCAGCGCACTATGCGGATGCCATTCGTTATAATGCTCGAACGCCTCTGCAAGGT
TCTTTGCTGCCGTTAACCCGTCTGGTTTGGGCATGATACTGATGTAGTCACGCTTTATCGTTTTCACGAA
GCTCTCTGCTATTCCGTTACTCTCCGGACTCCGCACCGCCGTGTTCTTCGGTTCAAGTCCCAACATCCGG
GCGAACTGGCGTGTTTCATTAGCCCGGTAGCATGAACCATTATCCGTCAGCCACTCCACTGGAGACGACG
GAAGATCGTTGCCGAAGCGGCGTTCCACCGCTCCCAGCATGACGTCCTGTACTGTTTCACTGTTGAAGCC
GCCGGTAGTGACCGCCCAGTGCAGTGCCTCACGATCACAGCAGTCCAGCGCGAACGTGACACGCAGTCTC
TCTCCGTTATCACAGCAGAACTCGAACCCGTCAGAGCACCATCGCTGATTGCTTTCTTTCACGGCCACTC
TGCCTGTATGTGCCCGTTTCGATGGCGGTACAGCAGGTTTTCGCTCAAGCAACAGCGCATTCTGGCGCAT
GATCCGGTAAACACGTTTGGCATTGATCGCAGGCATACCATCAAGTTCTGCCTGTCTGCGAAGCAGCGCC
CATACCCGACGATAACCATACGTTGGCAGCTCTCCGATAACATGGTGTATACGGAGAAGCACATCCGTAT
CATCAGTGTGACGACTGCGGCGGCCATCCATCCAGTCATCGGTTCGTCTGAGAATGACGTGCAACTGCGC
ACGCGACACCCGGAGACAACGGCTGACTAAGCTTACTCCCCATCCCCGGGCAATAAGGGCGCGTGCGCTA
TCCACTTTTTTGCCCGTCCATATTCAACGGCTTCTTTGAGGAGTTCATTTTCCATCGTTTTCTTGCCGAG
CAGGCGCTGGAGTTCTTTAATCTGCTTCATGGCGGCAGCAAGTTCAGAGGCAGGAACAACCTGTTCTCCG
GCGGCGACAGCAGTAAGACTTCCTTCCTGGTATTGCTTACGCCAGAGAAATAACTGGCTGGCTGCTACAC
CATGTTGCCGGGCAACGAGGGAGACCGTCATCCCCGGTTCAAAGCTCTGCTGAACAATTGCGATCTTTTC
CTGTGTGGTACGCCGTCTGCGTTTCTCCGGCCCTAAGACATCAATCATCTGTTCTCCAATGACTAGTCTA
AAAACTAGTATTAAGACTATCACTTATTTAAGTGATATTGGTTGTCTGGAGATTCAGGGGGCCAGTCTAA
ACCCCAGAACTTACTTATGCTGATTCCGGTGCGAAAATTGTTAATAAAGGTACTTGTAGATTCAATTGGT
CAACGCAACAGTTATGTGAAAACATGGGGTTGCGGAGGTTTTTTGAATGAGACGAACATTTACAGCAGAG
GAAAAAGCCTCTGTTTTTGAACTATGGAAGAACGGAACAGGCTTCAGTGAAATAGCGAATATCCTGGGTT
CAAAACCCGGAACGATCTTCACTATGTTAAGGGATACTGGCGGCATAAAACCCCATGAGCGTAAGCGGGC
TGTAGCTCACCTGACACTGTCTGAGCGCGAGGAGATACGAGCTGGTTTGTCAGCCAAAATGAGCATTCGT
GCGATAGCTACTGCGCTGAATCGCAGTCCTTCGACGATCTCACGTGAAGTTCAGCGTAATCGGGGCAGAC
GCTATTACAAAGCTGTTGATGCTAATAACCGAGCCAACAGAATGGCGAAAAGGCCAAAACCGTGCTTACT
GGATCAAAATTTACCATTGCGAAAGCTTGTTCTGGAAAAGCTGGAGATGAAATGGTCTCCAGAGCAAATA
TCAGGATGGTTAAGGCGAACAAAACCACGTCAAAAAACGCTGCGAATATCACCTGAGACAATTTATAAAA
CGCTGTACTTTCGTAGCCGTGAAGCGCTACACCACCTGAATATACAGCATCTGCGACGGTCGCATAGCCT
TCGCCATGGCAGGCGTCATACCCGCAAAGGCGAAAGAGGTACGATTAACATAGTGAACGGAACACCAATT
CACGAACGTTCCCGAAATATCGATAACAGACGCTCTCTAGGGCATTGGGAGGGCGATTTAGTCTCAGGTA
CAAAAAACTCTCATATAGCCACACTTGTAGACCGAAAATCACGTTATACGATCATCCTTAGACTCAGGGG
CAAAGATTCTGTCTCAGTAAATCAGGCTCTTACCGACAAATTCCTGAGTTTACCGTCAGAACTCAGAAAA
TCACTGACATGGGACAGAGGAATGGAACTGGCCAGACATCTAGAATTTACTGTCAGCACCGGCGTTAAAG
TTTACTTCTGCGATCCTCAGAGTCCTTGGCAGCGGGGAACAAATGAGAACACAAATGGGCTAATTCGGCA
GTACTTTCCTAAAAAGACATGTCTTGCCCAATATACTCAACATGAACTAGATCTGGTTGCTGCTCAGCTA
AACAACAGACCGAGAAAGACACTGAAGTTCAAAACACCGAAAGAGATAATTGAAAGGGGTGTTGCATTGA
CAGATTGAATCTACACTGTTGAAATTCAGAATTTAGGTTTTGCTTTTGTTACTGGTGAAAATACAACAGG
TATAAATAGTGGCACGATCTCGTTATTACAAAATGGTAAAGATCCGGCACCGTCTCCCATTGTTTTACTG
GCTACTAACGGAGGGAGCGCCACTAATGCAGGTACGATCACAGGTAAAGTGACGGAACAACATAGCGTAT
TTAACAAGTATTCAACGGGCACATCGAATTCATTTATTTTTAATAACGATGTCAGTAGCATAACAGGGTT
AGTCGCTCAATCGAATAGCACAATTATCAATACTGACAGCGGCATCATTGATTTGTATGGTCGTGGTAGT
GTCGGCATGCTTGCTATAGCAGATTCAACAGCAGAAAATCAGGGTAAAATTACACTGGATTCTATGTGGG
TAGATGCAAATGACACTACCGCAATGCGAGATATAGCTAGCAACAGCGCCATTGACTTCGGTACAGGTGT
GGGAGTTGGTACTGATAGTTATAGTGGTGCAGGGAAAAATGCAACAGCAATTAACCAATTGGGCGGTGTT
ATAACTATTTATAACGCCGGCGCAGGTATGGCGGCCTATGGCGCCAGCAATACAGTTATTAACCAGGGGA
CGATTAACCTCGAAAAAAATGGTAATTATGACGATAGTCTGGCAGCAAATACTCTGGTAGGGATGGCTGT
TTATGAGCATGGTACTGCTATCAACGACCAGACGGGTGTTATCAATATCAATGTTGGTACTGGTCAGGCG
TTTTATAACGATGGCACAGGAACAATTGTTAACTATGGTACAATCTGCACTTTCGGCGTGTGCCAATCGG
GGAATGAGTACAATAATACAGATGATTTCACCTCACTGATCTATACCGGTGGCGATACGATTACACGAAG
CGGAGAAACTGTAACGCTAAATAAATCTGCTGCTGTGACTGATAAGCTGGCTGGGAATGTTGTTAATAGC
GGAACGCTTTCCGGTGATCAAATTACGGTATCAAGCGGTCTTCTGGAAAATACCAGCGGTGGCATCATCA
ATAACTTAGTAAAACTTGACAAGGGTGCCGTCATTAAAAATGCCGGGGTGATGACGAATAACGTCGATGT
TAGCGGTGGAATCCTCAATAATGCCGGAGAAATGACTGCGCAAATTACCATGAATGCTGGTGCTGATAGT
TCGTTAGTGAACAACACCGGAACCATCAATAAAATCGTGCAGAACGCGGGGGTATTCAATAATAGTGGCA
GTGTAACAGGGCGGATGATGTCGGCTGGCGGGGTCTTTAATAATCAAACTGACGGGGCGATTATGAGAGG
TGCTGCGCTGACAGGTACTGCAGTGGCAAATAACGAAGGAACCTGGAACCTCGGAAGTAGTAGTGAGGGT
AACAACACCGGGATGCTGGAAGTTAATAATAATTCAGCTTTCAATAACCGCGGCGAGTTTATTCTTGATA
ACGACAAGAATGCTGTGCACATCAACCAGTCCGGTACGCTTTATAATACCGGTCACATGAACATCAGTAA
TTCTTCCCACAACGGAGCCGTTAATATGTGGGGCGGAAATGGTCGTTTTATCAATGACGGAACGATTGAT
GTTTCTGCGAAGTCACTGGTAGTCAGCGCTAATAATGCCGGCGATCAGAATGCCTTCTTCTGGAACCAGG
ATAACGGGGTCATCAACTTCGATCACGACAGCGCCAGTGCCGTGAAAGTCACCCACAGCAACTTTATTGC
CCAGAATGACGGCATCATGAACATCAGCGGCACCGGTGCTGTGGCTATGGAAGGTGATAAGAACGCGCAG
CTGGTTAACAATGGCACCATCAACCTCGGTACCGCAGGCACTACTGACACGGGTATGATCGGTATGCAAC
TCGATGCCAACGCCACGGCGGATGCGGTAATCGAAAACAACGGCACCATCAATATCTTCGCCAATGACTC
GTTTGCATTTAGCGTACTGGGTACAGTAGGTCATGTGGTTAACAACGGCACGGTGGTGATTGCCGATGGG
GTTACGGGTTCTGGACTGATCAAGCAGGGCGACAGCATCAATGTTGAAGGTATGAACGGTAACAACGGTA
ATAGCAGCGAAGTGCATTATGGCGACTATACGTTGCCGGATGTGCCGAAGCCCAATACGGTTAGTGTAAC
GTCGGGAAGTGATGAGGCTGGTGGCAGCATGAACAACCTCAACGGCTATGTCGTCGGTACCAACGTTAAC
GGCAGCGCCGGGAAGCTGAAGGTTAACAATGCCAGCATGAACGGCGTGGAGATTAACACGGGCTTTACCG
CTGGTACGGCAGACACCACTGTGAGTTTTGATAACGTAGTGGAAGGTAGCAACCTGACCGACGCTGACGC
CATCACCTCAACGTCCGTGGTATGGACTGCCAAAGGCAGCACCGATGCCAGCGGTAACGTTGACGTCACC
ATGAGCAAAAATGCCTACACCGATGTGGCAACAGATGCCTCGGTGAATGACATCGCGAAAGCACTGGATG
CGGGTTACACCAACAACGAACTGTTTACCAGCCTGAACGTCGGCACGACTGCTGAACTGAACAGTGCTCT
GAAACAGGTCAGCGGTAGCCAGGCGACCACGGTATTCCGCGAAGCGCGCGTGTTAAGCAACCGCTTTAGT
ATGCTGGCAGATGCCGCGCCGAAAGTGGGTAACGGTCTGGCGTTCAACGTTGTCGCGAAAGGCGATCCGC
GTGCCGAGTTAGGTAATAATACCGAATACGACATGCTGGCATTGCGTAAAACTATCGACCTGAGCGAAAG
CCAGACGATGAGTCTGGAGTACGGTATCGCTCGTCTCGATGGTGATGGTGCGCAGAAAGCGGGTGATAAT
GGCGTTACAGGCGGTTATAGCCAGTTTTTTGGCCTGAAACATCAGATGTCGTTCGATAACGGCATGAACT
GGAATAACGCCTTGCGTTACGACGTTCACAACCTTGACAGCAGCCGCTCGATTGCATTTGGCAACACGAA
CAAAACGGCTGATACCGACGTGAAACAGCAGTACCTGGAGTTCCGCAGCGAAGGGGCGAAGACTTTCGAA
CCGAGCGAAGGACTGAAGGTTACGCCATATGCGGGTGTAAAACTGCGTCACACACTGGAAGGTGGCTATC
AGGAGCGCAATGCCGGAGACTTTAACCTGAATATGAACAGTGGCAGCGAAACGGCGGTGGACAGCATCGT
CGGGCTGAAACTGGACTACGCAGGTAAAGACGGCTGGAGCGCTAGCGCTACGCTGGAAGGCGGGCCGAAC
CTGAGCTACGCGAAGAGCCAGCGTACGGCAAGCCTGGCAGGCGCAGGCAGTCAGCACTTTAACGTCGATG
ACGGTCAGAAGGGCGGCGGCATCAATAGCCTGACAAGCGTCGGCGTGAAGTACAGCAGCAAAGAAAGTTC
GCTGAATCTGGATGCGTACAACTGGAAAGAGGATGGCATCAGCGATAAAGGCGTGATGCTGAACTTCAAG
AAAACGTTC
# Upstream_100_bases:
CTCGTTATTACAAAATGGTAAAGATCCGGCACCGTCTCCCATTGTTTTACTGGCTACTAACGGAGGGAGC
GCCACTAATGCAGGTACGATCACAGGTAAA
# Blattner_No_Ontology:
Hypothetical, unclassified, unknown
# Gene_Position:
1468714-1472037 (Clockwise)
# Centisome_Position:
31.656
# Gene_Name:
ydbA
# GC_Content:
49.55%
# Metabolic_Importance:
Not Available
# Preceding_Gene:
paaY
# Following_Gene:
ydbC
# Operon_Status:
No
# Operon_Components:
None
# Paralogues:
None
# Copy Number:
Not Available
# RNA_Copy_No.:
Log phase (2max): 0.23
Stationary phase (2max): 0.14
Ref: Nature Biotech., 18, 1262-68, Dec. 2000 (PMID=11101804)
# Genbank_ID_(DNA):
X62680
# Genbank_ID_(Protein):
-
# SWISS_PROT_(AC_&_ID):
$ YDBA_ECOLI (P33666)
# 2D_Gel_Image:
Not Available
# Other_Databases:
- ECOCYC: EG11307
- EcoGene: EG11307
- EMBL: D90778
- InterPro: IPR005546; IPR008619
- Pfam: PF03797; PF05594
# Pfam_Domain/Function:
PF05594 Haemagluttinin repeat;
# Homologues:
Organism=Homo sapiens, GI51471105, Length=7202, Positives=33%, Blast Score=70.1
Organism=Caenorhabditis elegans, GI17568435, Length=1275, Positives=37%, Blast Score=84.0
Organism=Mus musculus, GI6679311, Length=672, Positives=32%, Blast Score=67.4
Organism=Drosophila melanogaster, GI45553053, Length=3135, Positives=33%, Blast Score=107
# Similarity:
To S.typhimurium bigA.
# EC_Number:
Not Available
# No._of_Amino_Acids:
1107 (Translated Protein)
1106 (Mature Protein)
# Molecular_Weight:
114750 114619
# Theoretical_pI:
4.30
# Theoretical_pI (Mature):
4.30
# Sequence:
// MTEQHSVFNKYSTGTSNSFIFNNDVSSITGLVAQSNSTIINTDSGIIDLYGRGSVGMLAI
// ADSTAENQGKITLDSMWVDANDTTAMRDIASNSAIDFGTGVGVGTDSYSGAGKNATAINQ
// LGGVITIYNAGAGMAAYGASNTVINQGTINLEKNGNYDDSLAANTLVGMAVYEHGTAIND
// QTGVININVGTGQAFYNDGTGTIVNYGTICTFGVCQSGNEYNNTDDFTSLIYTGGDTITR
// SGETVTLNKSAAVTDKLAGNVVNSGTLSGDQITVSSGLLENTSGGIINNLVKLDKGAVIK
// NAGVMTNNVDVSGGILNNAGEMTAQITMNAGADSSLVNNTGTINKIVQNAGVFNNSGSVT
// GRMMSAGGVFNNQTDGAIMRGAALTGTAVANNEGTWNLGSSSEGNNTGMLEVNNNSAFNN
// RGEFILDNDKNAVHINQSGTLYNTGHMNISNSSHNGAVNMWGGNGRFINDGTIDVSAKSL
// VVSANNAGDQNAFFWNQDNGVINFDHDSASAVKVTHSNFIAQNDGIMNISGTGAVAMEGD
// KNAQLVNNGTINLGTAGTTDTGMIGMQLDANATADAVIENNGTINIFANDSFAFSVLGTV
// GHVVNNGTVVIADGVTGSGLIKQGDSINVEGMNGNNGNSSEVHYGDYTLPDVPKPNTVSV
// TSGSDEAGGSMNNLNGYVVGTNVNGSAGKLKVNNASMNGVEINTGFTAGTADTTVSFDNV
// VEGSNLTDADAITSTSVVWTAKGSTDASGNVDVTMSKNAYTDVATDASVNDIAKALDAGY
// TNNELFTSLNVGTTAELNSALKQVSGSQATTVFREARVLSNRFSMLADAAPKVGNGLAFN
// VVAKGDPRAELGNNTEYDMLALRKTIDLSESQTMSLEYGIARLDGDGAQKAGDNGVTGGY
// SQFFGLKHQMSFDNGMNWNNALRYDVHNLDSSRSIAFGNTNKTADTDVKQQYLEFRSEGA
// KTFEPSEGLKVTPYAGVKLRHTLEGGYQERNAGDFNLNMNSGSETAVDSIVGLKLDYAGK
// DGWSASATLEGGPNLSYAKSQRTASLAGAGSQHFNVDDGQKGGGINSLTSVGVKYSSKES
// SLNLDAYNWKEDGISDKGVMLNFKKTF
// /\
// TEQHSVFNKYSTGTSNSFIFNNDVSSITGLVAQSNSTIINTDSGIIDLYGRGSVGMLAIA
// DSTAENQGKITLDSMWVDANDTTAMRDIASNSAIDFGTGVGVGTDSYSGAGKNATAINQL
// GGVITIYNAGAGMAAYGASNTVINQGTINLEKNGNYDDSLAANTLVGMAVYEHGTAINDQ
// TGVININVGTGQAFYNDGTGTIVNYGTICTFGVCQSGNEYNNTDDFTSLIYTGGDTITRS
// GETVTLNKSAAVTDKLAGNVVNSGTLSGDQITVSSGLLENTSGGIINNLVKLDKGAVIKN
// AGVMTNNVDVSGGILNNAGEMTAQITMNAGADSSLVNNTGTINKIVQNAGVFNNSGSVTG
// RMMSAGGVFNNQTDGAIMRGAALTGTAVANNEGTWNLGSSSEGNNTGMLEVNNNSAFNNR
// GEFILDNDKNAVHINQSGTLYNTGHMNISNSSHNGAVNMWGGNGRFINDGTIDVSAKSLV
// VSANNAGDQNAFFWNQDNGVINFDHDSASAVKVTHSNFIAQNDGIMNISGTGAVAMEGDK
// NAQLVNNGTINLGTAGTTDTGMIGMQLDANATADAVIENNGTINIFANDSFAFSVLGTVG
// HVVNNGTVVIADGVTGSGLIKQGDSINVEGMNGNNGNSSEVHYGDYTLPDVPKPNTVSVT
// SGSDEAGGSMNNLNGYVVGTNVNGSAGKLKVNNASMNGVEINTGFTAGTADTTVSFDNVV
// EGSNLTDADAITSTSVVWTAKGSTDASGNVDVTMSKNAYTDVATDASVNDIAKALDAGYT
// NNELFTSLNVGTTAELNSALKQVSGSQATTVFREARVLSNRFSMLADAAPKVGNGLAFNV
// VAKGDPRAELGNNTEYDMLALRKTIDLSESQTMSLEYGIARLDGDGAQKAGDNGVTGGYS
// QFFGLKHQMSFDNGMNWNNALRYDVHNLDSSRSIAFGNTNKTADTDVKQQYLEFRSEGAK
// TFEPSEGLKVTPYAGVKLRHTLEGGYQERNAGDFNLNMNSGSETAVDSIVGLKLDYAGKD
// GWSASATLEGGPNLSYAKSQRTASLAGAGSQHFNVDDGQKGGGINSLTSVGVKYSSKESS
// LNLDAYNWKEDGISDKGVMLNFKKTF
# PROSITE_Motif:
Hypothetical hesB/yadR/yfhF family signature. F-x-[LIVMFY]-x-N-[PG]-[NSKQ]-x(4)-C-x-C-[GS]-x-S-F.
# Important_Sites:
Not Available
# Transmembrane:
Not Available
# Cys/Met_Content:
0.2 %Cys (Translated Protein)
2.7 %Met (Translated Protein)
2.9 %Cys+Met (Translated Protein)
0.2 %Cys (Mature Protein)
2.6 %Met (Mature Protein)
2.8 %Cys+Met (Mature Protein)
# Secondary_Structure:
>YDBA_ECOLI (Translated Protein)
MQRKTLLSACIALALSGQGWAADITEVETTTGEKKNTNVTCPADPGKLSPEELKRLPSEC
CCHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHCCCHHH
SPLVEQNLMPWLSTGAAALITALAVVELNDDDDHHHRNNSPLPPTPPDDESDDTPVPPTP
CCCCCCCCCCCCCCHHHHHHCEEEEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
GGDEIIPDDPDDTPTPPKPVSFNNDVILDKTEKTLTIRDSVFTYTENADGTISLQDSNGR
CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
KATINLWQIDEANNTVALEGVSADGATKWQYNHNGELVITGDNATVNNNGKTTVDGKDST
EECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEECCCCCCCCCCCCCC
GTEINGNNGKVIQDGDLDVSGGGHGIDITGDSATVDNKGTMTVTDPESMGIQIDGDKAIV
CCEECCCCCEECCCCCCCCCCCCCCEECCCCCCCCCCCCCEECCCCCCCCEEECCCCCEE
NNEGESTITNGGTGTQINGDDATANNNGKTTVDGKDSTGTEINGNNGKVIQDGDLDVSGG
CCCCCCEECCCCCCCEECCCCCEECCCCCEEEECCCCEEEEEECCCCEEECCCCCEECCC
GHGIDITGDSATVDNKGTMTVTDPESIGIQVDGDQAVVNNEGESAITNGGTGTQINGDDA
CCCEEEECCCEEECCCCCCCCCCCCCCCCEECCCCCEECCCCCEEEECCCEEEEEECCCC
TANNNGKTTVDGKDSTGTEIAGNNGKVIQDGDLDVSGGGHGIDITGDSATVDNKGTMTVT
EECCCCCCEEEECCCCCCEEECCCEEEECCCCEEEECCCCCCEECCCCCEEECCCCEEEE
DPESIGIQIDGDQAIVNNEGESTITNGGTGTQINGNDATANNSGKTTVDGKDSTGTKIAG
CCCCCEEEECCCCEEEECCCCEEEECCCCCCCCCCCCCEEEECCCEEEECCCCCCEEECC
NIGIVNLDGSLTVTGGAHGVENIGDNGTVNNKGDIVVSDTGSIGVLINGEGATVSNTGDV
CCEEEECCCCCEECCCCCCCCCCCCCEEECCCCCEECCCCCCEEEEECCCCCEECCCCEE
NVSNEATGFSITTNSGKVSLAGSMQVGDFSTGVDLNGNNNSVTLAAKDLKVVGQKATGIN
EEECCCCCCCCCCCCCCEECCCCCCCCCCCCCCEECCCCCEEEECEEEEEEEECCCCCEE
VSGDANTVNITGNVLVDKDKTADNAAEYFFDPSVGINVYGSDNNVTLDGKLTVVSDSEVT
EEECCCEEEEEEEEEEEECCCCCCCCCCCCCCCEEEEEECCCCEEEECCCCCEECCCEEE
SRQSNLFDGSAEKTSGLVVIGDGNTVNMNGGLELIGEKNALADGSQVTSLRTGYSYTSVI
CCCCCCCCCCCCCCCCCEEEECCCEEECCCEEEEEECCCCCCCCCCCCCEEECCCCCCEE
VVSGESSVYLNGDTTISGEFPLGFAGVIRVQDKALLEIGSGATLTMQDIDSFEHHGTRTV
EECCCCCEEEECCCCCCCCCCCCCEEEEEECCCEEEEECCCCEEEEECCCEEEECCEEEE
EIQNLGFAFVTGENTTGINSGTISLLQNGKDPAPSPIVLLATNGGSATNAGTITGKVTEQ
EECCEEEEEEECCCCEEEECCEEEECCCCCCCCCCCCEEEEECCCCCCCHHHHHHHCCCC
HSVFNKYSTGTSNSFIFNNDVSSITGLVAQSNSTIINTDSGIIDLYGRGSVGMLAIADST
CCCCCCCCCCCCCCCEEEEECCEEEEEEECCCCEEEECCCEEEEEEECCEEEEEEECCCC
AENQGKITLDSMWVDANDTTAMRDIASNSAIDFGTGVGVGTDSYSGAGKNATAINQLGGV
CCCCCEEEECCCEEECCCHHHHHHHHHHHCCCCEEEEEEEEEECCCCCCCCCCCCCCCCE
ITIYNAGAGMAAYGASNTVINQGTINLEKNGNYDDSLAANTLVGMAVYEHGTAINDQTGV
EEEECCCHHHHHCCCCCEEEEEEEEEEEECCCCCCCCCCCCEEEEEEECCCEEECCCEEE
ININVGTGQAFYNDGTGTIVNYGTICTFGVCQSGNEYNNTDDFTSLIYTGGDTITRSGET
EEEECCCCCCEECCCEEEEEECCEEEEECCCCCCCCCCCCCCCCCCEECCCCCCCCCCCE
VTLNKSAAVTDKLAGNVVNSGTLSGDQITVSSGLLENTSGGIINNLVKLDKGAVIKNAGV
EEECCCCCCCCCCCCCCCCCCCCCCCCEECCCCCEEECCCCCCCCCCCCCCCCEEEECCE
MTNNVDVSGGILNNAGEMTAQITMNAGADSSLVNNTGTINKIVQNAGVFNNSGSVTGRMM
EEEEEEEECCEEECCCEEEEEEEECCCCCEEEEECCEEEEEEEECCEEEECCEECCCCCH
SAGGVFNNQTDGAIMRGAALTGTAVANNEGTWNLGSSSEGNNTGMLEVNNNSAFNNRGEF
HCCCCCCCCCCCEEEECCEEECCEEEECCCCEEECEEECCCCEEEEEECCCCEEEEEEEE
ILDNDKNAVHINQSGTLYNTGHMNISNSSHNGAVNMWGGNGRFINDGTIDVSAKSLVVSA
EEECCCEEEEEECCCEEECCEEEEEECCCCCCCCEECCCCEEEEECCEEEEEEEEEEEEE
NNAGDQNAFFWNQDNGVINFDHDSASAVKVTHSNFIAQNDGIMNISGTGAVAMEGDKNAQ
CCCCCCCEEEEECCCCEEECCCCCCCCEECCCCCEEECCCCEEEEEECCCCCCCCCCEEE
LVNNGTINLGTAGTTDTGMIGMQLDANATADAVIENNGTINIFANDSFAFSVLGTVGHVV
EEEECCEEECCCCCCCCCEEEEEECCCCCCCEEEECCCEEEEEECCEEEEEECCCCCEEE
NNGTVVIADGVTGSGLIKQGDSINVEGMNGNNGNSSEVHYGDYTLPDVPKPNTVSVTSGS
ECCEEEEECCCCCCHHCCCCCEEEECCCCCCCCCCCCEEEEEEECCCCCCCCCCCCCCCC
DEAGGSMNNLNGYVVGTNVNGSAGKLKVNNASMNGVEINTGFTAGTADTTVSFDNVVEGS
CCCCCCCCCCCCEEEEEECCCCCCEEEECCEEEEEEEECCCCCCCCCCCEEEEEEEEECC
NLTDADAITSTSVVWTAKGSTDASGNVDVTMSKNAYTDVATDASVNDIAKALDAGYTNNE
CCCCCCCCEEEEEEEECCCCCCCCCCEEEEECCCCCCCCCCCCCHHHHHHHHHCCCCCCE
LFTSLNVGTTAELNSALKQVSGSQATTVFREARVLSNRFSMLADAAPKVGNGLAFNVVAK
EEEEECCCCHHHHHHHHHHHCCCCCEEEEEHHHHHHHHHHHHHCCCCCCCCCEEEEEEEC
GDPRAELGNNTEYDMLALRKTIDLSESQTMSLEYGIARLDGDGAQKAGDNGVTGGYSQFF
CCCHHHCCCCCCHHHHHHHHHCCCCCCCCEEEEEEEEEECCCCCCCCCCCCCCCCHHHHH
GLKHQMSFDNGMNWNNALRYDVHNLDSSRSIAFGNTNKTADTDVKQQYLEFRSEGAKTFE
CCEECCCHHCCCCCCCEEEEEEECCCCCCEEEECCCCCCCCHHHHHHHHHHHHCCCCCCC
PSEGLKVTPYAGVKLRHTLEGGYQERNAGDFNLNMNSGSETAVDSIVGLKLDYAGKDGWS
CCCCCEECCCCCEEEEEEECCCCEECCCCCCEEEECCCCCCHHHEEEEEEEEECCCCCCC
ASATLEGGPNLSYAKSQRTASLAGAGSQHFNVDDGQKGGGINSLTSVGVKYSSKESSLNL
EEEEECCCCCCCCCCCCCEEEECCCCCCCCCCCCCCCCCCCCCEEEEEEEEECCCCCEEC
DAYNWKEDGISDKGVMLNFKKTF
CCCCCHHCCCCCCCEEEEEEEEC
/\
>YDBA_ECOLI (Mature Protein)
QRKTLLSACIALALSGQGWAADITEVETTTGEKKNTNVTCPADPGKLSPEELKRLPSECS
CHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHCCCHHHC
PLVEQNLMPWLSTGAAALITALAVVELNDDDDHHHRNNSPLPPTPPDDESDDTPVPPTPG
CCCCCCCCCCCCCHHHHHHCEEEEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
GDEIIPDDPDDTPTPPKPVSFNNDVILDKTEKTLTIRDSVFTYTENADGTISLQDSNGRK
CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCE
ATINLWQIDEANNTVALEGVSADGATKWQYNHNGELVITGDNATVNNNGKTTVDGKDSTG
ECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEECCCCCCCCCCCCCCC
TEINGNNGKVIQDGDLDVSGGGHGIDITGDSATVDNKGTMTVTDPESMGIQIDGDKAIVN
CEECCCCCEECCCCCCCCCCCCCCEECCCCCCCCCCCCCEECCCCCCCCEEECCCCCEEC
NEGESTITNGGTGTQINGDDATANNNGKTTVDGKDSTGTEINGNNGKVIQDGDLDVSGGG
CCCCCEECCCCCCCEECCCCCEECCCCCEEEECCCCEEEEEECCCCEEECCCCCEECCCC
HGIDITGDSATVDNKGTMTVTDPESIGIQVDGDQAVVNNEGESAITNGGTGTQINGDDAT
CCEEEECCCEEECCCCCCCCCCCCCCCCEECCCCCEECCCCCEEEECCCEEEEEECCCCE
ANNNGKTTVDGKDSTGTEIAGNNGKVIQDGDLDVSGGGHGIDITGDSATVDNKGTMTVTD
ECCCCCCEEEECCCCCCEEECCCEEEECCCCEEEECCCCCCEECCCCCEEECCCCEEEEC
PESIGIQIDGDQAIVNNEGESTITNGGTGTQINGNDATANNSGKTTVDGKDSTGTKIAGN
CCCCEEEECCCCEEEECCCCEEEECCCCCCCCCCCCCEEEECCCEEEECCCCCCEEECCC
IGIVNLDGSLTVTGGAHGVENIGDNGTVNNKGDIVVSDTGSIGVLINGEGATVSNTGDVN
CEEEECCCCCEECCCCCCCCCCCCCEEECCCCCEECCCCCCEEEEECCCCCEECCCCEEE
VSNEATGFSITTNSGKVSLAGSMQVGDFSTGVDLNGNNNSVTLAAKDLKVVGQKATGINV
EECCCCCCCCCCCCCCEECCCCCCCCCCCCCCEECCCCCEEEECEEEEEEEECCCCCEEE
SGDANTVNITGNVLVDKDKTADNAAEYFFDPSVGINVYGSDNNVTLDGKLTVVSDSEVTS
EECCCEEEEEEEEEEEECCCCCCCCCCCCCCCEEEEEECCCCEEEECCCCCEECCCEEEC
RQSNLFDGSAEKTSGLVVIGDGNTVNMNGGLELIGEKNALADGSQVTSLRTGYSYTSVIV
CCCCCCCCCCCCCCCCEEEECCCEEECCCEEEEEECCCCCCCCCCCCCEEECCCCCCEEE
VSGESSVYLNGDTTISGEFPLGFAGVIRVQDKALLEIGSGATLTMQDIDSFEHHGTRTVE
ECCCCCEEEECCCCCCCCCCCCCEEEEEECCCEEEEECCCCEEEEECCCEEEECCEEEEE
IQNLGFAFVTGENTTGINSGTISLLQNGKDPAPSPIVLLATNGGSATNAGTITGKVTEQH
ECCEEEEEEECCCCEEEECCEEEECCCCCCCCCCCCEEEEECCCCCCCHHHHHHHCCCCC
SVFNKYSTGTSNSFIFNNDVSSITGLVAQSNSTIINTDSGIIDLYGRGSVGMLAIADSTA
CCCCCCCCCCCCCCEEEEECCEEEEEEECCCCEEEECCCEEEEEEECCEEEEEEECCCCC
ENQGKITLDSMWVDANDTTAMRDIASNSAIDFGTGVGVGTDSYSGAGKNATAINQLGGVI
CCCCEEEECCCEEECCCHHHHHHHHHHHCCCCEEEEEEEEEECCCCCCCCCCCCCCCCEE
TIYNAGAGMAAYGASNTVINQGTINLEKNGNYDDSLAANTLVGMAVYEHGTAINDQTGVI
EEECCCHHHHHCCCCCEEEEEEEEEEEECCCCCCCCCCCCEEEEEEECCCEEECCCEEEE
NINVGTGQAFYNDGTGTIVNYGTICTFGVCQSGNEYNNTDDFTSLIYTGGDTITRSGETV
EEECCCCCCEECCCEEEEEECCEEEEECCCCCCCCCCCCCCCCCCEECCCCCCCCCCCEE
TLNKSAAVTDKLAGNVVNSGTLSGDQITVSSGLLENTSGGIINNLVKLDKGAVIKNAGVM
EECCCCCCCCCCCCCCCCCCCCCCCCEECCCCCEEECCCCCCCCCCCCCCCCEEEECCEE
TNNVDVSGGILNNAGEMTAQITMNAGADSSLVNNTGTINKIVQNAGVFNNSGSVTGRMMS
EEEEEEECCEEECCCEEEEEEEECCCCCEEEEECCEEEEEEEECCEEEECCEECCCCCHH
AGGVFNNQTDGAIMRGAALTGTAVANNEGTWNLGSSSEGNNTGMLEVNNNSAFNNRGEFI
CCCCCCCCCCCEEEECCEEECCEEEECCCCEEECEEECCCCEEEEEECCCCEEEEEEEEE
LDNDKNAVHINQSGTLYNTGHMNISNSSHNGAVNMWGGNGRFINDGTIDVSAKSLVVSAN
EECCCEEEEEECCCEEECCEEEEEECCCCCCCCEECCCCEEEEECCEEEEEEEEEEEEEC
NAGDQNAFFWNQDNGVINFDHDSASAVKVTHSNFIAQNDGIMNISGTGAVAMEGDKNAQL
CCCCCCEEEEECCCCEEECCCCCCCCEECCCCCEEECCCCEEEEEECCCCCCCCCCEEEE
VNNGTINLGTAGTTDTGMIGMQLDANATADAVIENNGTINIFANDSFAFSVLGTVGHVVN
EEECCEEECCCCCCCCCEEEEEECCCCCCCEEEECCCEEEEEECCEEEEEECCCCCEEEE
NGTVVIADGVTGSGLIKQGDSINVEGMNGNNGNSSEVHYGDYTLPDVPKPNTVSVTSGSD
CCEEEEECCCCCCHHCCCCCEEEECCCCCCCCCCCCEEEEEEECCCCCCCCCCCCCCCCC
EAGGSMNNLNGYVVGTNVNGSAGKLKVNNASMNGVEINTGFTAGTADTTVSFDNVVEGSN
CCCCCCCCCCCEEEEEECCCCCCEEEECCEEEEEEEECCCCCCCCCCCEEEEEEEEECCC
LTDADAITSTSVVWTAKGSTDASGNVDVTMSKNAYTDVATDASVNDIAKALDAGYTNNEL
CCCCCCCEEEEEEEECCCCCCCCCCEEEEECCCCCCCCCCCCCHHHHHHHHHCCCCCCEE
FTSLNVGTTAELNSALKQVSGSQATTVFREARVLSNRFSMLADAAPKVGNGLAFNVVAKG
EEEECCCCHHHHHHHHHHHCCCCCEEEEEHHHHHHHHHHHHHCCCCCCCCCEEEEEEECC
DPRAELGNNTEYDMLALRKTIDLSESQTMSLEYGIARLDGDGAQKAGDNGVTGGYSQFFG
CCHHHCCCCCCHHHHHHHHHCCCCCCCCEEEEEEEEEECCCCCCCCCCCCCCCCHHHHHC
LKHQMSFDNGMNWNNALRYDVHNLDSSRSIAFGNTNKTADTDVKQQYLEFRSEGAKTFEP
CEECCCHHCCCCCCCEEEEEEECCCCCCEEEECCCCCCCCHHHHHHHHHHHHCCCCCCCC
SEGLKVTPYAGVKLRHTLEGGYQERNAGDFNLNMNSGSETAVDSIVGLKLDYAGKDGWSA
CCCCEECCCCCEEEEEEECCCCEECCCCCCEEEECCCCCCHHHEEEEEEEEECCCCCCCE
SATLEGGPNLSYAKSQRTASLAGAGSQHFNVDDGQKGGGINSLTSVGVKYSSKESSLNLD
EEEECCCCCCCCCCCCCEEEECCCCCCCCCCCCCCCCCCCCCEEEEEEEEECCCCCEECC
AYNWKEDGISDKGVMLNFKKTF
CCCCHHCCCCCCCEEEEEEEEC
# PDB_Accession:
& Not Available
# Resolution:
Not Available
# Structure_CLASS:
Not Available
# Quaternary_Structure:
Not Available
# Interacting_Partners:
Not Available
# Cofactors:
Not Available
# Metals_Ions:
Not Available
# Kcat_Value_[1/min]:
Not Available
# Specific_Activity_[micromol/min/mg]:
Not Available
# Km_Value_[mM]:
Not Available
# Substrates:
Not Available
# Products:
Not Available
# Specific_Reaction:
Not Available
# General_Reaction:
Not Available
# Inhibitor:
Not Available
# Priority:
7.2
# Status:
Selected
# Availability:
Montreal-Kingston Bacterial Structural Genomics Initiative
#END_ECARDFILE
#BEGIN_ECARDFILE
# Entry_ID:
CC3506A.1
# Accession_No.:
UA0003506
# Name:
Hypothetical protein yfgJ
# Alternate_Names:
Not Available
# General_Function:
RING finger domain, C3HC4
# COG_Function:
Not Available
# COG_ID:
Not Available
# Specific_Function:
Not Available
# Riley_Gene_Function:
putative cytochrome
# Riley_Cell_Function:
>>>
Metabolism
Macromolecules (cellular constituent) biosynthesis
Large molecule carriers
Cytochromes
# Gene_Ontology:
>>>
Function: Not Available
||
>>>
Process: Not Available
||
>>>
Component: Not Available
# Location:
Cytoplasm
# Blattner_Number:
b2510
# Gene_Sequence:
ATGGAACTGCATTGTCCACAATGTCAGCATGTGCTTGATCAGGATAACGGCCATGCGCGTTGCCGATCCT
GCGGGGAATTTATTGAAATGAAAGCTCTTTGTCCAGACTGCCATCAACCGTTGCAGGTGTTAAAAGCCTG
TGGTGCAGTAGATTACTTCTGTCAGCACGGGCATGGCTTGATATCGAAAAAACGCGTTGAATTCGTGCTG
GCTTAA
# Upstream_100_bases:
TCTGATGAAGCACATCAAGAAAAATAAATAATTATCCGTAAGTATTTTATCTGCCATTCCCTCTATGAAT
GTAGAGGGAATGGCTACCGGAGGAATTCAT
# Blattner_No_Ontology:
Hypothetical, unclassified, unknown
# Gene_Position:
2633621-2633836 (Counter Clockwise)
# Centisome_Position:
56.768
# Gene_Name:
yfgJ
# GC_Content:
47.69%
# Metabolic_Importance:
Unknown
# Preceding_Gene:
xseA
# Following_Gene:
engA
# Operon_Status:
No
# Operon_Components:
None
# Paralogues:
None
# Copy Number:
Unknown
# RNA_Copy_No.:
Log phase (2max): 0.04
Stationary phase (2max): 0.07
Ref: Nature Biotech., 18, 1262-68, Dec. 2000 (PMID=11101804)
# Genbank_ID_(DNA):
G1788857
# Genbank_ID_(Protein):
AAC75563.1
# SWISS_PROT_(AC_&_ID):
$ YFGJ_ECOLI (P76575)
# 2D_Gel_Image:
Not Available
# Other_Databases:
- ECOCYC: EG14206
- EcoGene: EG14206
- EMBL: U00096
- InterPro: IPR010807
- Pfam: PF07191
- PIR: E65027
# Pfam_Domain/Function:
PF07191 Protein of unknown function (DUF1407);
# Homologues:
Not Available
# Similarity:
Not Available
# EC_Number:
Not Available
# No._of_Amino_Acids:
71 (Translated Protein)
71 (Mature Protein)
# Molecular_Weight:
7994 7994
# Theoretical_pI:
7.06
# Theoretical_pI (Mature):
7.06
# Sequence:
// MELHCPQCQHVLDQDNGHARCRSCGEFIEMKALCPDCHQPLQVLKACGAVDYFCQHGHGL
// ISKKRVEFVLA
// /\
// MELHCPQCQHVLDQDNGHARCRSCGEFIEMKALCPDCHQPLQVLKACGAVDYFCQHGHGL
// ISKKRVEFVLA
# PROSITE_Motif:
Not Available
# Important_Sites:
Not Available
# Transmembrane:
Not Available
# Cys/Met_Content:
11.3 %Cys (Translated Protein)
2.8 %Met (Translated Protein)
14.1 %Cys+Met (Translated Protein)
11.3 %Cys (Mature Protein)
2.8 %Met (Mature Protein)
14.1 %Cys+Met (Mature Protein)
# Secondary_Structure:
>YFGJ_ECOLI (Translated Protein)
MNVEGMATGGIHMELHCPQCQHVLDQDNGHARCRSCGEFIEMKALCPDCHQPLQVLKACG
CCCCEEEECCEEEEEECCHHHHHHCCCCCCCCCCCCCCEEEECCCCCCCCCHHHHHHHHH
AVDYFCQHGHGLISKKRVEFVLA
HHHHHHHCCCCCCCCEEEEEEEC
/\
>YFGJ_ECOLI (Mature Protein)
NVEGMATGGIHMELHCPQCQHVLDQDNGHARCRSCGEFIEMKALCPDCHQPLQVLKACGA
CCCEEEECCEEEEEECCHHHHHHCCCCCCCCCCCCCCEEEECCCCCCCCCHHHHHHHHHH
VDYFCQHGHGLISKKRVEFVLA
HHHHHHCCCCCCCCEEEEEEEC
# PDB_Accession:
& Not Available
# Resolution:
Not Available
# Structure_CLASS:
Alpha Beta
# Quaternary_Structure:
Not Available
# Interacting_Partners:
Not Available
# Cofactors:
Not Available
# Metals_Ions:
Not Available
# Kcat_Value_[1/min]:
Not Available
# Specific_Activity_[micromol/min/mg]:
Not Available
# Km_Value_[mM]:
Not Available
# Substrates:
Not Available
# Products:
Not Available
# Specific_Reaction:
Not Available
# General_Reaction:
Not Available
# Inhibitor:
Not Available
# Priority:
9.4
# Status:
Selected, Cloned, Expressed, HSQC
# Availability:
Northeast Structural Genomics Consortium
#END_ECARDFILE
#BEGIN_ECARDFILE
# Entry_ID:
CC1609A.1
# Accession_No.:
UA0001609
# Name:
Flagellar motor switch protein fliG
# Alternate_Names:
Not Available
# General_Function:
Transport and binding proteins; FliG C-terminal domain
# COG_Function:
Cell motility (code N)
# COG_ID:
COG1536 Flagellar motor switch protein (Evalue = 1e-177)
# Specific_Function:
FliG is one of three proteins (fliG, fliN, fliM) that form a switch complex that is proposed to be located at the base of the basal body. This complex interacts with the cheY and cheZ chemotaxis proteins, in addition to contacting components of the motor that determine the direction of flagellar rotation.
# Riley_Gene_Function:
flagellar biosynthesis; component of motor switching and energizing
# Riley_Cell_Function:
>>>
Metabolism
Macromolecules (cellular constituent) biosynthesis
Flagella
||
>>>
Cell processes
Motility (incl. chemotaxis, energytaxis, aerotaxis, redoxtaxis)
||
>>>
Cell structure
Flagellum
# Gene_Ontology:
>>>
Function: motor activity
||
>>>
Process: physiological process
Process: locomotion
Process: cell motility
Process: ciliary or flagellar motility
||
>>>
Process: cellular physiological process
Process: cell motility
Process: ciliary or flagellar motility
||
>>>
Process: localization
Process: establishment of localization
Process: cell motility
Process: ciliary or flagellar motility
||
>>>
Process: localization of cell
Process: cell motility
Process: ciliary or flagellar motility
||
>>>
Process: cellular process
Process: cellular physiological process
Process: cell motility
Process: ciliary or flagellar motility
||
>>>
Component: cell
Component: cell projection
Component: flagellum
Component: flagellum (sensu Bacteria)
# Location:
Inner Membrane-Associated
# Blattner_Number:
b1939
# Gene_Sequence:
ATGAGTAACCTGACAGGCACCGATAAAAGCGTCATCCTGCTGATGACCATTGGCGAAGACCGGGCGGCAG
AGGTGTTCAAGCACCTCTCCCAGCGTGAAGTACAAACCCTGAGCGCTGCAATGGCGAACGTCACGCAGAT
CTCCAACAAGCAGCTAACCGATGTGCTGGCGGAGTTTGAGCAAGAAGCTGAACAGTTTGCCGCACTGAAT
ATCAACGCCAACGATTATCTGCGCTCGGTATTGGTCAAAGCTCTGGGTGAAGAACGTGCCGCCAGCCTGC
TGGAAGATATTCTCGAAACTCGCGATACCGCCAGCGGTATTGAAACGCTCAACTTTATGGAGCCACAGAG
CGCCGCCGATCTGATTCGCGATGAGCATCCGCAAATTATCGCCACCATTCTGGTGCATCTGAAGCGCGCC
CAAGCCGCCGATATTCTGGCGTTGTTCGATGAACGTCTGCGCCACGACGTGATGTTGCGTATCGCCACCT
TTGGCGGCGTGCAGCCAGCCGCGCTGGCGGAGCTGACCGAAGTACTGAATGGCTTGCTCGACGGTCAGAA
TCTCAAGCGCAGCAAAATGGGCGGCGTGAGAACGGCAGCCGAAATTATCAACCTGATGAAAACTCAGCAG
GAAGAAGCCGTTATTACCGCCGTGCGTGAATTCGACGGCGAGCTGGCGCAGAAAATCATCGACGAGATGT
TCCTGTTCGAGAATCTGGTGGATGTCGACGATCGCAGCATTCAGCGTCTGTTGCAGGAAGTGGATTCCGA
ATCGCTGTTGATCGCGCTGAAAGGAGCCGAGCAGCCACTGCGCGAGAAATTCTTGCGCAATATGTCGCAG
CGTGCCGCCGATATTCTGCGCGACGATCTCGCCAACCGTGGTCCGGTGCGTCTGTCGCAGGTGGAAAACG
AACAGAAAGCGATTCTGCTGATTGTGCGCCGCCTTGCCGAAACTGGCGAGATGGTAATTGGCAGCGGCGA
GGATACCTATGTCTGA
# Upstream_100_bases:
CGTCTGGGGGCAGAAGTCATGAGCCAGCGTATCCGTGAAATGTCTGATAACGATCCGCGCGTGGTGGCGC
TGGTCATTCGCCAGTGGATAAATAACGATC
# Blattner_No_Ontology:
Cell structure
# Gene_Position:
2012904-2013899 (Clockwise)
# Centisome_Position:
43.385
# Gene_Name:
fliG or fla AII.2 or fla BII
# GC_Content:
55.62%
# Metabolic_Importance:
Non_Essential
# Preceding_Gene:
fliF
# Following_Gene:
fliH
# Operon_Status:
Yes
# Operon_Components:
fliF_fliG_fliH_fliI_fliJ_fliK Ref: Center for Information Biology and DNA Data Bank of Japan, National Institute of Genetics http://www.cib.nig.ac.jp/dda/taitoh/ecoli.operon.html
# Paralogues:
None
# Copy Number:
10-20 (rich media)
Ref: CCDB stats page/microscopic inspection
# RNA_Copy_No.:
Log phase (2max): 0.39
Stationary phase (2max): 0.16
Ref: Nature Biotech., 18, 1262-68, Dec. 2000 (PMID=11101804)
# Genbank_ID_(DNA):
G1788249
# Genbank_ID_(Protein):
AAC75006.1
# SWISS_PROT_(AC_&_ID):
$ FLIG_ECOLI (P0ABZ1)
# 2D_Gel_Image:
Not Available
# Other_Databases:
- ECOCYC: EG11654
- EcoGene: EG11654
- EMBL: L13243
- InterPro: IPR000090; IPR011002
- Pfam: PF01706
- PIR: H64957
- PRINTS: PR00954
# Pfam_Domain/Function:
PF01706 FliG C-terminal domain
# Homologues:
Not Available
# Similarity:
Belongs to the fliG family.
# EC_Number:
Not Available
# No._of_Amino_Acids:
331 (Translated Protein)
330 (Mature Protein)
# Molecular_Weight:
36777 36645
# Theoretical_pI:
4.42
# Theoretical_pI (Mature):
4.42
# Sequence:
// MSNLTGTDKSVILLMTIGEDRAAEVFKHLSQREVQTLSAAMANVTQISNKQLTDVLAEFE
// QEAEQFAALNINANDYLRSVLVKALGEERAASLLEDILETRDTASGIETLNFMEPQSAAD
// LIRDEHPQIIATILVHLKRAQAADILALFDERLRHDVMLRIATFGGVQPAALAELTEVLN
// GLLDGQNLKRSKMGGVRTAAEIINLMKTQQEEAVITAVREFDGELAQKIIDEMFLFENLV
// DVDDRSIQRLLQEVDSESLLIALKGAEQPLREKFLRNMSQRAADILRDDLANRGPVRLSQ
// VENEQKAILLIVRRLAETGEMVIGSGEDTYV
// /\
// SNLTGTDKSVILLMTIGEDRAAEVFKHLSQREVQTLSAAMANVTQISNKQLTDVLAEFEQ
// EAEQFAALNINANDYLRSVLVKALGEERAASLLEDILETRDTASGIETLNFMEPQSAADL
// IRDEHPQIIATILVHLKRAQAADILALFDERLRHDVMLRIATFGGVQPAALAELTEVLNG
// LLDGQNLKRSKMGGVRTAAEIINLMKTQQEEAVITAVREFDGELAQKIIDEMFLFENLVD
// VDDRSIQRLLQEVDSESLLIALKGAEQPLREKFLRNMSQRAADILRDDLANRGPVRLSQV
// ENEQKAILLIVRRLAETGEMVIGSGEDTYV
# PROSITE_Motif:
Not Available
# Important_Sites:
Not Available
# Transmembrane:
Not Available
# Cys/Met_Content:
0.0 %Cys (Translated Protein)
3.0 %Met (Translated Protein)
3.0 %Cys+Met (Translated Protein)
0.0 %Cys (Mature Protein)
2.7 %Met (Mature Protein)
2.7 %Cys+Met (Mature Protein)
# Secondary_Structure:
>FLIG_ECOLI (Translated Protein)
MSNLTGTDKSVILLMTIGEDRAAEVFKHLSQREVQTLSAAMANVTQISNKQLTDVLAEFE
CCCCCHHHHHHHHHHHCCCHHHHHHHHCCCHHHHHHHHHHHHHCCCCCHHHHHHHHHHHH
QEAEQFAALNINANDYLRSVLVKALGEERAASLLEDILETRDTASGIETLNFMEPQSAAD
HHHHHCCCCCCCCHHHHHHHHHHHCCHHHHHHHHHHHHCCCCCCCCCHHHHHCCHHHHHH
LIRDEHPQIIATILVHLKRAQAADILALFDERLRHDVMLRIATFGGVQPAALAELTEVLN
HHHHCCCCEEEEEEEEECHHHHHHHHHCCCHHHHHHHHHHHHCCCCCCHHHHHHHHHHHH
GLLDGQNLKRSKMGGVRTAAEIINLMKTQQEEAVITAVREFDGELAQKIIDEMFLFENLV
HHHHHCCCCCCCCCCHHHHHHHHHHCCHHHHHHHHHHHHHHCHHHHHHHHHHHCCHHHHH
DVDDRSIQRLLQEVDSESLLIALKGAEQPLREKFLRNMSQRAADILRDDLANRGPVRLSQ
CCCHHHHHHHHHHCCHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHH
VENEQKAILLIVRRLAETGEMVIGSGEDTYV
HHHHHHHHHHHHHHHHHCCCEEECCCCCCCC
/\
>FLIG_ECOLI (Mature Protein)
SNLTGTDKSVILLMTIGEDRAAEVFKHLSQREVQTLSAAMANVTQISNKQLTDVLAEFEQ
CCCCHHHHHHHHHHHCCCHHHHHHHHCCCHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHH
EAEQFAALNINANDYLRSVLVKALGEERAASLLEDILETRDTASGIETLNFMEPQSAADL
HHHHCCCCCCCCHHHHHHHHHHHCCHHHHHHHHHHHHCCCCCCCCCHHHHHCCHHHHHHH
IRDEHPQIIATILVHLKRAQAADILALFDERLRHDVMLRIATFGGVQPAALAELTEVLNG
HHHCCCCEEEEEEEEECHHHHHHHHHCCCHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHH
LLDGQNLKRSKMGGVRTAAEIINLMKTQQEEAVITAVREFDGELAQKIIDEMFLFENLVD
HHHHCCCCCCCCCCHHHHHHHHHHCCHHHHHHHHHHHHHHCHHHHHHHHHHHCCHHHHHC
VDDRSIQRLLQEVDSESLLIALKGAEQPLREKFLRNMSQRAADILRDDLANRGPVRLSQV
CCHHHHHHHHHHCCHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHH
ENEQKAILLIVRRLAETGEMVIGSGEDTYV
HHHHHHHHHHHHHHHHCCCEEECCCCCCCC
# PDB_Accession:
& Not Available
# Resolution:
Not Available
# Structure_CLASS:
Mainly Alpha
# Quaternary_Structure:
heteromeric Large complex of flgA and flgB and flgC and flgD and flgE and flgH and flgI and flgK and flgL and fliD and fliE and fliM and fliL and fliG and motA and motB and fliS
# Interacting_Partners:
1) flgB, 2) flgC, 3) flgD, 4) flgE, 5) flgH, 6) flgI, 7) flgA, 8) flgL, 9) fliD, 10) fliE, 11) fliM, 12) fliL, 13) flgK, 14) motA, 15) motB, 16) fliS, 17) fliJ,
# Cofactors:
Not Available
# Metals_Ions:
Not Available
# Kcat_Value_[1/min]:
Not Available
# Specific_Activity_[micromol/min/mg]:
Not Available
# Km_Value_[mM]:
Not Available
# Substrates:
Not Available
# Products:
Not Available
# Specific_Reaction:
Not Available
# General_Reaction:
Not Available
# Inhibitor:
Not Available
# Priority:
3.1
# Status:
Not Available
# Availability:
Not Available
#END_ECARDFILE
#BEGIN_ECARDFILE
# Entry_ID:
CC0300A.1
# Accession_No.:
UA0000300
# Name:
Ketol-acid reductoisomerase
# Alternate_Names:
Acetohydroxy-acid isomeroreductase; Alpha-keto-beta-hydroxylacil reductoisomerase
# General_Function:
Amino acid biosynthesis; 6-phosphogluconate dehydrogenase C-terminal domain-like; NAD(P)-binding Rossmann-fold domains
# COG_Function:
Amino acid transport and metabolism (code E)
# COG_ID:
COG0059 Ketol-acid reductoisomerase (Evalue = 0.0)
# Specific_Function:
Not Available
# Riley_Gene_Function:
ketol-acid reductoisomerase, NAD(P)-binding
# Riley_Cell_Function:
>>>
Metabolism
Building block biosynthesis
Amino acids
Isoleucine/valine
||
>>>
Location of gene products
Cytoplasm
# Gene_Ontology:
>>>
Function: catalytic activity
Function: oxidoreductase activity
Function: oxidoreductase activity, acting on CH-OH group of donors
Function: oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor
Function: ketol-acid reductoisomerase activity
||
>>>
Process: physiological process
Process: metabolism
Process: nitrogen compound metabolism
Process: amine metabolism
Process: amino acid metabolism
Process: amino acid biosynthesis
Process: branched chain family amino acid biosynthesis
||
>>>
Process: branched chain family amino acid metabolism
Process: branched chain family amino acid biosynthesis
||
>>>
Process: amine biosynthesis
Process: amino acid biosynthesis
Process: branched chain family amino acid biosynthesis
||
>>>
Process: nitrogen compound biosynthesis
Process: amine biosynthesis
Process: amino acid biosynthesis
Process: branched chain family amino acid biosynthesis
||
>>>
Process: biosynthesis
Process: cellular biosynthesis
Process: nitrogen compound biosynthesis
Process: amine biosynthesis
Process: amino acid biosynthesis
Process: branched chain family amino acid biosynthesis
||
>>>
Process: cellular metabolism
Process: organic acid metabolism
Process: carboxylic acid metabolism
Process: amino acid metabolism
Process: amino acid biosynthesis
Process: branched chain family amino acid biosynthesis
||
>>>
Process: branched chain family amino acid metabolism
Process: branched chain family amino acid biosynthesis
||
>>>
Process: amino acid and derivative metabolism
Process: amino acid metabolism
Process: amino acid biosynthesis
Process: branched chain family amino acid biosynthesis
||
>>>
Process: branched chain family amino acid metabolism
Process: branched chain family amino acid biosynthesis
||
>>>
Process: amine metabolism
Process: amino acid metabolism
Process: amino acid biosynthesis
Process: branched chain family amino acid biosynthesis
||
>>>
Process: branched chain family amino acid metabolism
Process: branched chain family amino acid biosynthesis
||
>>>
Process: amine biosynthesis
Process: amino acid biosynthesis
Process: branched chain family amino acid biosynthesis
||
>>>
Process: cellular biosynthesis
Process: nitrogen compound biosynthesis
Process: amine biosynthesis
Process: amino acid biosynthesis
Process: branched chain family amino acid biosynthesis
||
>>>
Process: primary metabolism
Process: amino acid and derivative metabolism
Process: amino acid metabolism
Process: amino acid biosynthesis
Process: branched chain family amino acid biosynthesis
||
>>>
Process: branched chain family amino acid metabolism
Process: branched chain family amino acid biosynthesis
||
>>>
Process: cellular physiological process
Process: cellular metabolism
Process: organic acid metabolism
Process: carboxylic acid metabolism
Process: amino acid metabolism
Process: amino acid biosynthesis
Process: branched chain family amino acid biosynthesis
||
>>>
Process: branched chain family amino acid metabolism
Process: branched chain family amino acid biosynthesis
||
>>>
Process: amino acid and derivative metabolism
Process: amino acid metabolism
Process: amino acid biosynthesis
Process: branched chain family amino acid biosynthesis
||
>>>
Process: branched chain family amino acid metabolism
Process: branched chain family amino acid biosynthesis
||
>>>
Process: amine metabolism
Process: amino acid metabolism
Process: amino acid biosynthesis
Process: branched chain family amino acid biosynthesis
||
>>>
Process: branched chain family amino acid metabolism
Process: branched chain family amino acid biosynthesis
||
>>>
Process: amine biosynthesis
Process: amino acid biosynthesis
Process: branched chain family amino acid biosynthesis
||
>>>
Process: cellular biosynthesis
Process: nitrogen compound biosynthesis
Process: amine biosynthesis
Process: amino acid biosynthesis
Process: branched chain family amino acid biosynthesis
||
>>>
Process: cellular process
Process: cellular physiological process
Process: cellular metabolism
Process: organic acid metabolism
Process: carboxylic acid metabolism
Process: amino acid metabolism
Process: amino acid biosynthesis
Process: branched chain family amino acid biosynthesis
||
>>>
Process: branched chain family amino acid metabolism
Process: branched chain family amino acid biosynthesis
||
>>>
Process: amino acid and derivative metabolism
Process: amino acid metabolism
Process: amino acid biosynthesis
Process: branched chain family amino acid biosynthesis
||
>>>
Process: branched chain family amino acid metabolism
Process: branched chain family amino acid biosynthesis
||
>>>
Process: amine metabolism
Process: amino acid metabolism
Process: amino acid biosynthesis
Process: branched chain family amino acid biosynthesis
||
>>>
Process: branched chain family amino acid metabolism
Process: branched chain family amino acid biosynthesis
||
>>>
Process: amine biosynthesis
Process: amino acid biosynthesis
Process: branched chain family amino acid biosynthesis
||
>>>
Process: cellular biosynthesis
Process: nitrogen compound biosynthesis
Process: amine biosynthesis
Process: amino acid biosynthesis
Process: branched chain family amino acid biosynthesis
||
>>>
Component: Not Available
# Location:
Cytoplasm
# Blattner_Number:
b3774
# Gene_Sequence:
ATGGCTAACTACTTCAATACACTGAATCTGCGCCAGCAGCTGGCACAGCTGGGCAAATGTCGCTTTATGG
GCCGCGATGAATTCGCCGATGGCGCGAGCTACCTTCAGGGTAAAAAAGTAGTCATCGTCGGCTGTGGCGC
ACAGGGTCTGAACCAGGGCCTGAACATGCGTGATTCTGGTCTCGATATCTCCTACGCTCTGCGTAAAGAA
GCGATTGCCGAGAAGCGCGCGTCCTGGCGTAAAGCGACCGAAAATGGTTTTAAAGTGGGTACTTACGAAG
AACTGATCCCACAGGCGGATCTGGTGATTAACCTGACGCCGGACAAGCAGCACTCTGATGTAGTGCGCAC
CGTACAGCCACTGATGAAAGACGGCGCGGCGCTGGGCTACTCGCACGGTTTCAACATCGTCGAAGTGGGC
GAGCAGATCCGTAAAGATATCACCGTAGTGATGGTTGCGCCGAAATGCCCAGGCACCGAAGTGCGTGAAG
AGTACAAACGTGGGTTCGGCGTACCGACGCTGATTGCCGTTCACCCGGAAAACGATCCGAAAGGCGAAGG
CATGGCGATTGCCAAAGCCTGGGCGGCTGCAACCGGTGGTCACCGTGCGGGTGTGCTGGAATCGTCCTTC
GTTGCGGAAGTGAAATCTGACCTGATGGGCGAGCAAACCATCCTGTGCGGTATGTTGCAGGCTGGCTCTC
TGCTGTGCTTCGACAAGCTGGTGGAAGAAGGTACCGATCCAGCATACGCAGAAAAACTGATTCAGTTCGG
TTGGGAAACCATCACCGAAGCACTGAAACAGGGCGGCATCACCCTGATGATGGACCGTCTCTCTAACCCG
GCGAAACTGCGTGCTTATGCGCTTTCTGAACAGCTGAAAGAGATCATGGCACCCCTGTTCCAGAAACATA
TGGACGACATCATCTCCGGCGAATTCTCTTCCGGTATGATGGCGGACTGGGCCAACGATGATAAGAAACT
GCTGACCTGGCGTGAAGAGACCGGCAAAACCGCGTTTGAAACCGCGCCGCAGTATGAAGGCAAAATCGGC
GAGCAGGAGTACTTCGATAAAGGCGTACTGATGATTGCGATGGTGAAAGCGGGCGTTGAACTGGCGTTCG
AAACCATGGTCGATTCCGGCATCATTGAAGAGTCTGCATATTATGAATCACTGCACGAGCTGCCGCTGAT
TGCCAACACCATCGCCCGTAAGCGTCTGTACGAAATGAACGTGGTTATCTCTGATACCGCTGAGTACGGT
AACTATCTGTTCTCTTACGCTTGTGTGCCGTTGCTGAAACCGTTTATGGCAGAGCTGCAACCGGGCGACC
TGGGTAAAGCTATTCCGGAAGGCGCGGTAGATAACGGGCAACTGCGTGATGTGAACGAAGCGATTCGCAG
CCATGCGATTGAGCAGGTAGGTAAGAAACTGCGCGGCTATATGACAGATATGAAACGTATTGCTGTTGCG
GGTTAA
# Upstream_100_bases:
GAATATATCAATTTCCGCAATAAATTTCCTGTCATATAGTGAATTCAATCTCGCAAACGCGAACCGAACA
ATAAGAAGCACAACATCACGAGGAATCACC
# Blattner_No_Ontology:
Amino acid biosynthesis and metabolism
# Gene_Position:
3955993-3957468 (Clockwise)
# Centisome_Position:
85.264
# Gene_Name:
ilvC
# GC_Content:
53.79%
# Metabolic_Importance:
Non_Essential
# Preceding_Gene:
ilvY
# Following_Gene:
ppiC
# Operon_Status:
No
# Operon_Components:
None
# Paralogues:
None
# Copy Number:
160 Molecules/Cell In: Growth Phase, Minimal Media (E. Coli Proteins From A SDS/Heat Extract).
1420 Molecules/Cell In: Growth Phase, Minimal Media (E. Coli Proteins From A SDS/Heat Extract).
480 Molecules/Cell In: Growth Phase, Minimal Media (E. Coli Proteins From A SDS/Heat Extract).
# RNA_Copy_No.:
Log phase (2max): 0.06
Stationary phase (2max): 0.13
Ref: Nature Biotech., 18, 1262-68, Dec. 2000 (PMID=11101804)
# Genbank_ID_(DNA):
G1790210
# Genbank_ID_(Protein):
AAC76779.1
# SWISS_PROT_(AC_&_ID):
$ ILVC_ECOLI (P05793)
# 2D_Gel_Image:
http://ca.expasy.org/cgi-bin/ch2d-compute-map?ECOLI,P05793
# Other_Databases:
- 2DPAGE: P05793
- ECOCYC: EG10495
- EcoGene: EG10495
- EMBL: M11689
- InterPro: IPR008927; IPR013023; IPR000506; IPR013116
- Pfam: PF01450; PF07991
- PIR: A65181
# Pfam_Domain/Function:
PF01450 Acetohydroxy acid isomeroreductase, catalytic domain
# Homologues:
Organism=Saccharomyces cerevisiae, GI6323387, Length=395, Positives=47%, Blast Score=116
# Similarity:
Belongs to the ketol-acid reductoisomerase family.
# EC_Number:
1.1.1.86
# No._of_Amino_Acids:
491 (Translated Protein)
490 (Mature Protein)
# Molecular_Weight:
54070 53939
# Theoretical_pI:
4.96
# Theoretical_pI (Mature):
4.96
# Sequence:
// MANYFNTLNLRQQLAQLGKCRFMGRDEFADGASYLQGKKVVIVGCGAQGLNQGLNMRDSG
// LDISYALRKEAIAEKRASWRKATENGFKVGTYEELIPQADLVINLTPDKQHSDVVRTVQP
// LMKDGAALGYSHGFNIVEVGEQIRKDITVVMVAPKCPGTEVREEYKRGFGVPTLIAVHPE
// NDPKGEGMAIAKAWAAATGGHRAGVLESSFVAEVKSDLMGEQTILCGMLQAGSLLCFDKL
// VEEGTDPAYAEKLIQFGWETITEALKQGGITLMMDRLSNPAKLRAYALSEQLKEIMAPLF
// QKHMDDIISGEFSSGMMADWANDDKKLLTWREETGKTAFETAPQYEGKIGEQEYFDKGVL
// MIAMVKAGVELAFETMVDSGIIEESAYYESLHELPLIANTIARKRLYEMNVVISDTAEYG
// NYLFSYACVPLLKPFMAELQPGDLGKAIPEGAVDNGQLRDVNEAIRSHAIEQVGKKLRGY
// MTDMKRIAVAG
// /\
// ANYFNTLNLRQQLAQLGKCRFMGRDEFADGASYLQGKKVVIVGCGAQGLNQGLNMRDSGL
// DISYALRKEAIAEKRASWRKATENGFKVGTYEELIPQADLVINLTPDKQHSDVVRTVQPL
// MKDGAALGYSHGFNIVEVGEQIRKDITVVMVAPKCPGTEVREEYKRGFGVPTLIAVHPEN
// DPKGEGMAIAKAWAAATGGHRAGVLESSFVAEVKSDLMGEQTILCGMLQAGSLLCFDKLV
// EEGTDPAYAEKLIQFGWETITEALKQGGITLMMDRLSNPAKLRAYALSEQLKEIMAPLFQ
// KHMDDIISGEFSSGMMADWANDDKKLLTWREETGKTAFETAPQYEGKIGEQEYFDKGVLM
// IAMVKAGVELAFETMVDSGIIEESAYYESLHELPLIANTIARKRLYEMNVVISDTAEYGN
// YLFSYACVPLLKPFMAELQPGDLGKAIPEGAVDNGQLRDVNEAIRSHAIEQVGKKLRGYM
// TDMKRIAVAG
# PROSITE_Motif:
Not Available
# Important_Sites:
Active_Site 131 131 Potential
# Transmembrane:
Not Available
# Cys/Met_Content:
1.2 %Cys (Translated Protein)
4.3 %Met (Translated Protein)
5.5 %Cys+Met (Translated Protein)
1.2 %Cys (Mature Protein)
4.1 %Met (Mature Protein)
5.3 %Cys+Met (Mature Protein)
# Secondary_Structure:
>ILVC_ECOLI (Translated Protein)
ANYFNTLNLRQQLAQLGKCRFMGRDEFADGASYLQGKKVVIVGCGAQGLNQGLNMRDSGL
CCCCCCCCHHHHHHHCCCCCCCCCCCCCCCHHHHCCCCEEEEEECCHHHHHCCCCHHCCC
DISYALRKEAIAEKRASWRKATENGFKVGTYEELIPQADLVINLTPDKQHSDVVRTVQPL
CEEEEECCCCCCCHHHHHHHHHHCCCEECCHHHHHCCCCEEEEECCCCCCHHCCHHHHHC
MKDGAALGYSHGFNIVEVGEQIRKDITVVMVAPKCPGTEVREEYKRGFGVPTLIAVHPEN
CCCCCEEECCCCCEEEEEEEEECCCCEEEEEECCCCCHHHHHHHHHCCCCCEEEEEECCC
DPKGEGMAIAKAWAAATGGHRAGVLESSFVAEVKSDLMGEQTILCGMLQAGSLLCFDKLV
CCCCCHHHHHHHHHHHHCCCCCCCCCCCHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHH
EEGTDPAYAEKLIQFGWETITEALKQGGITLMMDRLSNPAKLRAYALSEQLKEIMAPLFQ
HCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHCCCCCCHHHHHHHHHHHH
KHMDDIISGEFSSGMMADWANDDKKLLTWREETGKTAFETAPQYEGKIGEQEYFDKGVLM
HHHHHHCCCHHHHHHHHHHHHCCHHHHHHHHHHCCCHHHHCHHHCCCCCCCCCCCCCHHH
IAMVKAGVELAFETMVDSGIIEESAYYESLHELPLIANTIARKRLYEMNVVISDTAEYGN
HHHHHHHHHHHHHHHHHCCCCHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHCHHHHHCC
YLFSYACVPLLKPFMAELQPGDLGKAIPEGAVDNGQLRDVNEAIRSHAIEQVGKKLRGYM
CCCHHHHHHHHHHHHHHHCCCHHHHHHHHHCCCCHHHHHHHHHHHCCCHHHHHHHHHHHC
TDMKRIAVAG
CHHHEEEECC
/\
>ILVC_ECOLI (Mature Protein)
NYFNTLNLRQQLAQLGKCRFMGRDEFADGASYLQGKKVVIVGCGAQGLNQGLNMRDSGLD
CCCCCCCHHHHHHHCCCCCCCCCCCCCCCHHHHCCCCEEEEEECCHHHHHCCCCHHCCCC
ISYALRKEAIAEKRASWRKATENGFKVGTYEELIPQADLVINLTPDKQHSDVVRTVQPLM
EEEEECCCCCCCHHHHHHHHHHCCCEECCHHHHHCCCCEEEEECCCCCCHHCCHHHHHCC
KDGAALGYSHGFNIVEVGEQIRKDITVVMVAPKCPGTEVREEYKRGFGVPTLIAVHPEND
CCCCEEECCCCCEEEEEEEEECCCCEEEEEECCCCCHHHHHHHHHCCCCCEEEEEECCCC
PKGEGMAIAKAWAAATGGHRAGVLESSFVAEVKSDLMGEQTILCGMLQAGSLLCFDKLVE
CCCCHHHHHHHHHHHHCCCCCCCCCCCHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHH
EGTDPAYAEKLIQFGWETITEALKQGGITLMMDRLSNPAKLRAYALSEQLKEIMAPLFQK
CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHCCCCCCHHHHHHHHHHHHH
HMDDIISGEFSSGMMADWANDDKKLLTWREETGKTAFETAPQYEGKIGEQEYFDKGVLMI
HHHHHCCCHHHHHHHHHHHHCCHHHHHHHHHHCCCHHHHCHHHCCCCCCCCCCCCCHHHH
AMVKAGVELAFETMVDSGIIEESAYYESLHELPLIANTIARKRLYEMNVVISDTAEYGNY
HHHHHHHHHHHHHHHHCCCCHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHCHHHHHCCC
LFSYACVPLLKPFMAELQPGDLGKAIPEGAVDNGQLRDVNEAIRSHAIEQVGKKLRGYMT
CCHHHHHHHHHHHHHHHCCCHHHHHHHHHCCCCHHHHHHHHHHHCCCHHHHHHHHHHHCC
DMKRIAVAG
HHHEEEECC
# PDB_Accession:
& Model Based on 1YVE (41-286)
# Resolution:
Not Available
# Structure_CLASS:
Mainly Alpha
# Quaternary_Structure:
Not Available
# Interacting_Partners:
Unknown
# Cofactors:
--NADH --NADP+ --NADPH
# Metals_Ions:
--Mg2+ --Mn2+
# Kcat_Value_[1/min]:
108
# Specific_Activity_[micromol/min/mg]:
Not Available
# Km_Value_[mM]:
0.014 {@ACET02.txt*2-acetolactate!}
0.002 {@ACET01.txt*2-aceto-2-hydroxybutyrate!}
# Substrates:
(S)-2-Acetolactate + H+ + Nicotinamide adenine dinucleotide phosphate - reduced + (S)-2-Aceto-2-hydroxybutanoate
# Products:
(R)-2,3-Dihydroxy-3-methylbutanoate + Nicotinamide adenine dinucleotide phosphate + (R)-2,3-Dihydroxy-3-methylpentanoate
# Specific_Reaction:
(S)-2-Acetolactate + H+ + Nicotinamide adenine dinucleotide phosphate - reduced --> (R)-2,3-Dihydroxy-3-methylbutanoate + Nicotinamide adenine dinucleotide phosphate
(S)-2-Aceto-2-hydroxybutanoate + H+ + Nicotinamide adenine dinucleotide phosphate - reduced --> (R)-2,3-Dihydroxy-3-methylpentanoate + Nicotinamide adenine dinucleotide phosphate
# General_Reaction:
Acetoin rearrangement; Redox reaction;
# Inhibitor:
--2,3-dihydroxy-3-methylbutyrate --2-methyllactate --3-aminopyridine-NADP+ --Mn2+ --N-hydroxy-N-isopropyloxamate --NADP+
# Priority:
1.0
# Status:
Not Available
# Availability:
Not Available
#END_ECARDFILE
#BEGIN_ECARDFILE
# Entry_ID:
CC2983A.1
# Accession_No.:
UA0002983
# Name:
Hypothetical protein ymdF
# Alternate_Names:
Not Available
# General_Function:
Not Available
# COG_Function:
General function prediction only (code R)
# COG_ID:
COG3729 General stress protein (Evalue = 3e-24)
# Specific_Function:
Not Available
# Riley_Gene_Function:
unknown CDS
# Riley_Cell_Function:
>>>
Not Available
# Gene_Ontology:
>>>
Function: Not Available
||
>>>
Process: Not Available
||
>>>
Component: Not Available
# Location:
Not Available
# Blattner_Number:
b1005.1
# Gene_Sequence:
ATGGCAAACCATCGAGGCGGTTCCGGCAATTTTGCAGAAGACCGCGAAAGAGCATCAGAAGCAGGTAAAA
AAGGTGGACAGCACAGCGGGGGTAATTTCAAGAATGACCCGCAGCGCGCATCTGAAGCAGGTAAAAAAGG
TGGTAAGAGCAGTCACGGCAAAAGCGACAACTAG
# Upstream_100_bases:
AGTTCACTAAGCTTAGTCCCACGTAGCGAAAATATGGCAGCCGCCATACGCCGCGTTAATTCTATGCAAT
ATGATGTCTATACCCAGACGGAGGTCAGTA
# Blattner_No_Ontology:
Hypothetical, unclassified, unknown
# Gene_Position:
1067304-1067477 (Clockwise)
# Centisome_Position:
23.004
# Gene_Name:
ymdF
# GC_Content:
51.15%
# Metabolic_Importance:
Not Available
# Preceding_Gene:
wrbA
# Following_Gene:
ycdG
# Operon_Status:
No
# Operon_Components:
None
# Paralogues:
b1259 (yciG) 86;
# Copy Number:
Not Available
# RNA_Copy_No.:
Not Available
# Genbank_ID_(DNA):
D90738
# Genbank_ID_(Protein):
BAA35782.1
# SWISS_PROT_(AC_&_ID):
$ YMDF_ECOLI (P56614)
# 2D_Gel_Image:
Not Available
# Other_Databases:
- ECOCYC: EG14358
- EcoGene: EG14358
- EMBL: U00096
# Pfam_Domain/Function:
None
# Homologues:
Not Available
# Similarity:
Belongs to the con-10 family.
# EC_Number:
Not Available
# No._of_Amino_Acids:
57 (Translated Protein)
45 (Mature Protein)
# Molecular_Weight:
5883 4683
# Theoretical_pI:
10.66
# Theoretical_pI (Mature):
10.40
# Sequence:
// MANHRGGSGNFAEDRERASEAGKKGGQHSGGNFKNDPQRASEAGKKGGKSSHGKSDN
// /\
// EDRERASEAGKKGGQHSGGNFKNDPQRASEAGKKGGKSSHGKSDN
# PROSITE_Motif:
Hypothetical hesB/yadR/yfhF family signature.
F-x-[LIVMFY]-x-N-[PG]-[NSKQ]-x(4)-C-x-C-[GS]-x-S-F.
# Important_Sites:
Not Available
# Transmembrane:
Not Available
# Cys/Met_Content:
0.0 %Cys (Translated Protein)
1.8 %Met (Translated Protein)
1.8 %Cys+Met (Translated Protein)
0.0 %Cys (Mature Protein)
0.0 %Met (Mature Protein)
0.0 %Cys+Met (Mature Protein)
# Secondary_Structure:
>YMDF_ECOLI (Translated Protein)
MANHRGGSGNFAEDRERASEAGKKGGQHSGGNFKNDPQRASEAGKKGGKSSHGKSDN
CCCCCCCCCCCCCCHHHHHHHCCCCCCCCCCCCCCCHHHHHHHHHCCCCCCCCCCCC
/\
>YMDF_ECOLI (Mature Protein)
ANHRGGSGNFAEDRERASEAGKKGGQHSGGNFKNDPQRASEAGKKGGKSSHGKSDN
CCCCCCCCCCCCCHHHHHHHCCCCCCCCCCCCCCCHHHHHHHHHCCCCCCCCCCCC
# PDB_Accession:
& Not Available
# Resolution:
Not Available
# Structure_CLASS:
Unstructured
# Quaternary_Structure:
Not Available
# Interacting_Partners:
Not Available
# Cofactors:
Not Available
# Metals_Ions:
Not Available
# Kcat_Value_[1/min]:
Not Available
# Specific_Activity_[micromol/min/mg]:
Not Available
# Km_Value_[mM]:
Not Available
# Substrates:
Not Available
# Products:
Not Available
# Specific_Reaction:
Not Available
# General_Reaction:
Not Available
# Inhibitor:
Not Available
# Priority:
7.4
# Status:
Not Available
# Availability:
Not Available
#END_ECARDFILE
#BEGIN_ECARDFILE
# Entry_ID:
CC4255A.1
# Accession_No.:
UA0004255
# Name:
Putative general secretion pathway protein G precursor
# Alternate_Names:
Protein transport protein hofG
# General_Function:
Transport and binding proteins; Pilin
# COG_Function:
Cell motility (code N)
# COG_ID:
COG2165 Type II secretory pathway, pseudopilin PulG (Evalue = 1e-80)
# Specific_Function:
Involved in a general secretion pathway (GSP) for the export of proteins (By similarity).
# Riley_Gene_Function:
putative protein exporter, transport across outer membrane (General Secretory Pathway), pilin-like
# Riley_Cell_Function:
>>>
cryptic genes
||
>>>
Transport
Putative uncharacterized transport protein
||
>>>
Transport
substrate
protein
# Gene_Ontology:
>>>
Function: transporter activity
Function: protein transporter activity
||
>>>
Function: transporter activity
Function: protein transporter activity
||
>>>
Function: transporter activity
Function: protein transporter activity
||
>>>
Process: physiological process
Process: localization
Process: protein localization
Process: establishment of protein localization
Process: protein secretion
Process: type II protein secretion system
||
>>>
Process: establishment of localization
Process: establishment of protein localization
Process: protein secretion
Process: type II protein secretion system
||
>>>
Process: secretion
Process: protein secretion
Process: type II protein secretion system
Process: physiological process
Process: localization
Process: protein localization
Process: establishment of protein localization
Process: protein secretion
Process: type II protein secretion system
||
>>>
Process: establishment of localization
Process: establishment of protein localization
Process: protein secretion
Process: type II protein secretion system
||
>>>
Process: secretion
Process: protein secretion
Process: type II protein secretion system
Process: physiological process
Process: localization
Process: protein localization
Process: establishment of protein localization
Process: protein secretion
Process: type II protein secretion system
||
>>>
Process: establishment of localization
Process: establishment of protein localization
Process: protein secretion
Process: type II protein secretion system
||
>>>
Process: secretion
Process: protein secretion
Process: type II protein secretion system
||
>>>
Component: cell
Component: membrane
Component: plasma membrane
Component: type II protein secretion system complex
||
>>>
Component: protein complex
Component: type II protein secretion system complex
||
>>>
Component: cell
Component: membrane
Component: plasma membrane
Component: type II protein secretion system complex
||
>>>
Component: protein complex
Component: type II protein secretion system complex
||
>>>
Component: cell
Component: membrane
Component: plasma membrane
Component: type II protein secretion system complex
||
>>>
Component: protein complex
Component: type II protein secretion system complex
# Location:
Cytoplasm
# Blattner_Number:
b3328
# Gene_Sequence:
ATGCGCGCAACGGATAAGCAACGCGGTTTTACATTACTGGAAATTATGGTGGTGATCGTCATTATCGGCG
TACTTGCCAGCCTGGTGGTTCCTAACCTAATGGGCAATAAAGAAAAGGCGGATAAGCAAAAAGCCGTCAG
CGATATTGTGGCGCTGGAAAACGCCCTTGATATGTACAAACTCGACAATCATCACTATCCAACCACAAAT
CAGGGGCTTGAATCCTTAGTAGAAGCGCCGACACTGCCACCGCTGGCCGCAAACTATAACAAGGAAGGTT
ATATCAAGCGTCTGCCTGCCGATCCCTGGGGCAATGATTATGTCCTCGTTAATCCTGGTGAACATGGTGC
ATACGATCTGCTTTCAGCAGGGCCCGATGGTGAAATGGGAACCGAGGACGACATCACCAACTGGGGTTTG
AGCAAGAAGAAAAAGTAA
# Upstream_100_bases:
AGCACTCATTATTACGATGGCACTGATCGTCCTGTTTATTGTCGTGTCGGTACTCCAACCTCTTCTTCAA
CTTAACTCAATGATTAATTAAGGAAAGCAT
# Blattner_No_Ontology:
Transport and binding proteins
# Gene_Position:
3459045-3459482 (Clockwise)
# Centisome_Position:
74.554
# Gene_Name:
hofG or hopG
# GC_Content:
48.63%
# Metabolic_Importance:
Unknown
# Preceding_Gene:
hofF
# Following_Gene:
hofH
# Operon_Status:
Yes
# Operon_Components:
gspD_yheG_hofF_hofG_hofH_gspI_yheI_yheJ_yheK Ref: RegulonDB http://kinich.cifn.unam.mx:8850/db/regulondb_cgi.query_simple?v_organism=ECK12&v_table=3&v_name=hofG
# Paralogues:
b0108 (ppdD) 27;
# Copy Number:
Unknown
# RNA_Copy_No.:
Log phase (2max): 0.08
Stationary phase (2max): 0.14
Ref: Nature Biotech., 18, 1262-68, Dec. 2000 (PMID=11101804)
# Genbank_ID_(DNA):
G1789725
# Genbank_ID_(Protein):
AAC76353.1
# SWISS_PROT_(AC_&_ID):
$ GSPG_ECOLI (P41442)
# 2D_Gel_Image:
Not Available
# Other_Databases:
- ECOCYC: EG12886
- EcoGene: EG12886
- EMBL: U20786
- InterPro: IPR000983; IPR002416; IPR012902; IPR001120; IPR010054
- Pfam: PF07963
- PIR: B56150
- PRINTS: PR00813
- PROSITE: PS00409
# Pfam_Domain/Function:
None
# Homologues:
Not Available
# Similarity:
Belongs to the GSP G family.
# EC_Number:
Not Available
# No._of_Amino_Acids:
145 (Translated Protein)
119 (Mature Protein)
# Molecular_Weight:
15905 13036
# Theoretical_pI:
4.94
# Theoretical_pI (Mature):
4.70
# Sequence:
// MRATDKQRGFTLLEIMVVIVIIGVLASLVVPNLMGNKEKADKQKAVSDIVALENALDMYK
// LDNHHYPTTNQGLESLVEAPTLPPLAANYNKEGYIKRLPADPWGNDYVLVNPGEHGAYDL
// LSAGPDGEMGTEDDITNWGLSKKKK
// /\
// SLVVPNLMGNKEKADKQKAVSDIVALENALDMYKLDNHHYPTTNQGLESLVEAPTLPPLA
// ANYNKEGYIKRLPADPWGNDYVLVNPGEHGAYDLLSAGPDGEMGTEDDITNWGLSKKKK
# PROSITE_Motif:
PROKAR_NTER_METHYL; PATTERN. PS00409; Prokaryotic N-terminal methylation site. [KRHEQSTAG]-G-[FYLIVM]-[ST]-[LT]-[LIVP]-E-[LIVMFWSTAG](14). PDOC00342; //
# Important_Sites:
Not Available
# Transmembrane:
Not Available
# Cys/Met_Content:
0.0 %Cys (Translated Protein)
3.4 %Met (Translated Protein)
3.4 %Cys+Met (Translated Protein)
0.0 %Cys (Mature Protein)
2.5 %Met (Mature Protein)
2.5 %Cys+Met (Mature Protein)
# Secondary_Structure:
>GSPG_ECOLI (Translated Protein)
MRATDKQRGFTLLEIMVVIVIIGVLASLVVPNLMGNKEKADKQKAVSDIVALENALDMYK
CCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHH
LDNHHYPTTNQGLESLVEAPTLPPLAANYNKEGYIKRLPADPWGNDYVLVNPGEHGAYDL
HHHCCCCCHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEECCCCCCEEE
LSAGPDGEMGTEDDITNWGLSKKKK
EEECCCCCCCCCCCCCCCCCCCCCC
/\
>GSPG_ECOLI (Mature Protein)
RATDKQRGFTLLEIMVVIVIIGVLASLVVPNLMGNKEKADKQKAVSDIVALENALDMYKL
CCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHH
DNHHYPTTNQGLESLVEAPTLPPLAANYNKEGYIKRLPADPWGNDYVLVNPGEHGAYDLL
HHCCCCCHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEECCCCCCEEEE
SAGPDGEMGTEDDITNWGLSKKKK
EECCCCCCCCCCCCCCCCCCCCCC
# PDB_Accession:
& Not Available
# Resolution:
Not Available
# Structure_CLASS:
Mainly Alpha
# Quaternary_Structure:
heteromultimer; GspC-O secreton complex
# Interacting_Partners:
Not Available
# Cofactors:
Not Available
# Metals_Ions:
Not Available
# Kcat_Value_[1/min]:
Not Available
# Specific_Activity_[micromol/min/mg]:
Not Available
# Km_Value_[mM]:
Not Available
# Substrates:
Not Available
# Products:
Not Available
# Specific_Reaction:
Not Available
# General_Reaction:
Not Available
# Inhibitor:
Not Available
# Priority:
6.6
# Status:
Not Available
# Availability:
Not Available
#END_ECARDFILE
#BEGIN_ECARDFILE
# Entry_ID:
CC0056A.1
# Accession_No.:
UA0000056
# Name:
Cyanate hydratase
# Alternate_Names:
Cyanase; Cyanate lyase; Cyanate hydrolase
# General_Function:
Amino acid biosynthesis; lambda repressor-like DNA-binding domains; Cyanase C-terminal domain
# COG_Function:
Inorganic ion transport and metabolism (code P)
# COG_ID:
COG1513 Cyanate lyase (Evalue = 4e-83)
# Specific_Function:
Catalyzes the reaction of cyanate with bicarbonate to produce ammonia and carbon dioxide.
# Riley_Gene_Function:
cyanate aminohydrolase (cyanase)
# Riley_Cell_Function:
>>>
Metabolism
Central intermediary metabolism
Cyanate catabolism
||
>>>
Metabolism
Metabolism of other compounds
Nitrogen metabolism
||
>>>
Cell processes
Protection
Detoxification (xenobiotic metabolism)
# Gene_Ontology:
>>>
Function: catalytic activity
Function: lyase activity
Function: carbon-oxygen lyase activity
Function: hydro-lyase activity
||
>>>
Function: catalytic activity
Function: lyase activity
Function: carbon-nitrogen lyase activity
Function: cyanate hydratase activity
||
>>>
Process: physiological process
Process: metabolism
Process: physiological process
Process: metabolism
Process: nitrogen compound metabolism
Process: cyanate metabolism
||
>>>
Process: cellular metabolism
Process: organic acid metabolism
Process: cyanate metabolism
||
>>>
Process: one-carbon compound metabolism
Process: cyanate metabolism
||
>>>
Process: cellular physiological process
Process: cellular metabolism
Process: organic acid metabolism
Process: cyanate metabolism
||
>>>
Process: one-carbon compound metabolism
Process: cyanate metabolism
||
>>>
Process: cellular process
Process: cellular physiological process
Process: cellular metabolism
Process: organic acid metabolism
Process: cyanate metabolism
||
>>>
Process: one-carbon compound metabolism
Process: cyanate metabolism
||
>>>
Component: Not Available
# Location:
Cytoplasm
# Blattner_Number:
b0340
# Gene_Sequence:
ATGATTCAGTCACAAATTAACCGCAATATTCGTCTTGATCTTGCCGATGCCATTTTGCTCAGCAAAGCTA
AAAAAGATCTCTCATTTGCCGAGATTGCCGACGGCACCGGTCTGGCAGAAGCCTTTGTAACCGCGGCTTT
GCTGGGTCAGCAGGCGCTTCCTGCCGACGCCGCCCGCCTGGTCGGGGCGAAGCTGGATCTCGACGAAGAC
TCCATTCTACTGTTGCAGATGATTCCACTGCGTGGCTGCATTGATGACCGTATTCCAACTGACCCAACGA
TGTATCGTTTCTATGAAATGTTGCAGGTGTACGGTACAACCCTGAAAGCGTTGGTTCATGAGAAATTTGG
CGATGGCATTATTAGCGCGATTAACTTCAAACTCGACGTTAAGAAAGTGGCGGACCCGGAAGGTGGCGAA
CGTGCGGTCATCACCTTAGATGGTAAATATCTGCCGACCAAACCGTTCTGA
# Upstream_100_bases:
CCAGTTTGTGCCACTGGCCGCTAATCCTCGCGTTTGTGCCATACCGCTACGCCAACCGACCGCAGCGTAA
CCTTATTTTTAAACCATCAGGAGTTCCACC
# Blattner_No_Ontology:
Central intermediary metabolism
# Gene_Position:
358713-359183 (Clockwise)
# Centisome_Position:
7.731
# Gene_Name:
cynS or cnt
# GC_Content:
50.53%
# Metabolic_Importance:
Non_Essential
# Preceding_Gene:
cynT
# Following_Gene:
cynX
# Operon_Status:
Yes
# Operon_Components:
cynT_cynS_cynX Ref: Center for Information Biology and DNA Data Bank of Japan, National Institute of Genetics http://www.cib.nig.ac.jp/dda/taitoh/ecoli.operon.html
# Paralogues:
None
# Copy Number:
Unknown
# RNA_Copy_No.:
Log phase (2max): 0.32
Stationary phase (2max): 0.06
Ref: Nature Biotech., 18, 1262-68, Dec. 2000 (PMID=11101804)
# Genbank_ID_(DNA):
G1786535
# Genbank_ID_(Protein):
AAC73443.1
# SWISS_PROT_(AC_&_ID):
$ CYNS_ECOLI (P00816)
# 2D_Gel_Image:
Not Available
# Other_Databases:
- ECO2DBASE: C013.6
- ECOCYC: EG10175
- EcoGene: EG10175
- EMBL: M17891
- InterPro: IPR008076; IPR003712; IPR010982
- Pfam: PF02560
- PIR: A91850
- PRINTS: PR01693
# Pfam_Domain/Function:
PF02560 Cyanate lyase C-terminal domain;
# Homologues:
Not Available
# Similarity:
Belongs to the cyanase family.
# EC_Number:
4.2.1.104
# No._of_Amino_Acids:
156 (Translated Protein)
156 (Mature Protein)
# Molecular_Weight:
17049 17049
# Theoretical_pI:
4.78
# Theoretical_pI (Mature):
4.78
# Sequence:
// MIQSQINRNIRLDLADAILLSKAKKDLSFAEIADGTGLAEAFVTAALLGQQALPADAARL
// VGAKLDLDEDSILLLQMIPLRGCIDDRIPTDPTMYRFYEMLQVYGTTLKALVHEKFGDGI
// ISAINFKLDVKKVADPEGGERAVITLDGKYLPTKPF
// /\
// MIQSQINRNIRLDLADAILLSKAKKDLSFAEIADGTGLAEAFVTAALLGQQALPADAARL
// VGAKLDLDEDSILLLQMIPLRGCIDDRIPTDPTMYRFYEMLQVYGTTLKALVHEKFGDGI
// ISAINFKLDVKKVADPEGGERAVITLDGKYLPTKPF
# PROSITE_Motif:
Not Available
# Important_Sites:
Not Available
# Transmembrane:
Not Available
# Cys/Met_Content:
0.6 %Cys (Translated Protein)
2.6 %Met (Translated Protein)
3.2 %Cys+Met (Translated Protein)
0.6 %Cys (Mature Protein)
2.6 %Met (Mature Protein)
3.2 %Cys+Met (Mature Protein)
# Secondary_Structure_(PDB):
IQSQINRNIRLDLADAILLSKAKKDLSFAEIADGTGLAEAFVTAALLGQQA
CCCCCCHHHHHHHHHHHHHHHHHHCCCHHHHHCCCCCCHHHHHHHHHCCEE
LPADAARLVGAKLDLDEDSILLLQIPLRGCIDDRIPTDPTYRFYELQVYGT
ECHHHHHHHHHHHCCCHHHHHHHEEEECCCCCCCCCCCCCCCCCCCHHHHH
TLKALVHEKFGDGIISAINFKLDVKKVADPEGGERAVITLDGKYLPTKPF
HHHHHHHHHHCCCEEECEEEEEEEEEEECCCCCEEEEEEEEEEEEEECCC
# PDB_Accession:
& 1DWK
# Resolution:
1.65
# Structure_CLASS:
Alpha Beta
# Quaternary_Structure:
homodecameric A10 complex of cynS
# Interacting_Partners:
1) cynS,
# Cofactors:
--HCO3-
# Metals_Ions:
Not Available
# Kcat_Value_[1/min]:
Not Available
# Specific_Activity_[micromol/min/mg]:
Not Available
# Km_Value_[mM]:
29 {cyanate}
0.6 {cyanate}
# Substrates:
Cyanate + bicarbonate
# Products:
CO2 + carbamate
# Specific_Reaction:
Cyanate + bicarbonate = CO2 + carbamate
# General_Reaction:
Carbon-nitrogen lyase reaction;
# Inhibitor:
--2-Oxoglutarate --3-Nitropropionate --Acetate --Br- --Cl- --EDTA --Formate --Fumarate --Glutarate --Hg2+ --Hydroxymalonate --Malate --Maleate --Malonate --Methyl methanethiosulfonate --Methylmalonate --More --N-Ethylmaleimide --N3- --NO2- --NO3- --Oxalate --Oxaloacetate --S2O32- --SO32- --SO42- --Succinate --Sulfoacetate --Tetranitromethane
# Priority:
0.0
# Status:
Selected, Cloned, Expressed, Soluble, Purified, Crystallized, Diffraction-quality Crystals, Diffraction, Crystal Structure, In PDB
# Availability:
Midwest Center for Structural Genomics
#END_ECARDFILE
#BEGIN_ECARDFILE
# Entry_ID:
CC4355A.1
# Accession_No.:
UA0004355
# Name:
5'-nucleotidase yjjG
# Alternate_Names:
Nucleoside 5'-monophosphate phosphohydrolase
# General_Function:
HAD-like
# COG_Function:
General function prediction only (code R)
# COG_ID:
COG1011 Predicted hydrolase (HAD superfamily) (Evalue = 1e-130)
# Specific_Function:
Nucleotidase that shows high phosphatase activity toward three nucleoside 5'-monophosphates, UMP, dUMP, and dTMP, and very low activity against TDP, IMP, UDP, GMP, dGMP, AMP, dAMP, and 6- phosphogluconate. Is strictly specific to substrates with 5'- phosphates and shows no activity against nucleoside 2'- or 3'- monophosphates. Might be involved in the pyrimidine nucleotide substrate cycles.
# Riley_Gene_Function:
putative enzyme with a phosphatase-like domain; predicted hydrolase
# Riley_Cell_Function:
>>>
Not Available
# Gene_Ontology:
>>>
Function: catalytic activity
||
>>>
Function: catalytic activity
Function: hydrolase activity
Function: hydrolase activity, acting on ester bonds
Function: phosphoric ester hydrolase activity
Function: phosphoric monoester hydrolase activity
Function: phosphoglycolate phosphatase activity
||
>>>
Function: catalytic activity
Function: hydrolase activity
||
>>>
Process: physiological process
Process: metabolism
Process: physiological process
Process: metabolism
Process: physiological process
Process: metabolism
||
>>>
Component: Not Available
# Location:
Cytoplasm
# Blattner_Number:
b4374
# Gene_Sequence:
ATGAAGTGGGACTGGATTTTCTTTGATGCCGATGAAACGCTGTTTACCTTTGACTCATTCACCGGCCTGC
AGCGGATGTTTCTTGATTACAGCGTCACCTTTACCGCTGAAGATTTTCAGGACTATCAGGCCGTTAACAA
GCCACTGTGGGTGGATTATCAAAACGGCGCGATCACTTCATTACAGCTTCAGCACGGGCGGTTTGAGAGC
TGGGCCGAACGGCTGAACGTCGAGCCAGGTAAACTCAACGAAGCCTTTATTAATGCGATGGCGGAAATCT
GCACGCCGCTGCCGGGCGCGGTTTCTCTGCTTAACGCCATTCGTGGCAACGCCAAAATCGGCATCATCAC
CAACGGCTTTAGTGCCTTGCAACAGGTGCGTCTGGAACGCACGGGCCTGCGTGATTACTTCGATTTGCTG
GTGATTTCCGAAGAAGTTGGCGTTGCCAAACCGAATAAGAAAATTTTCGATTATGCGCTGGAACAGGCGG
GCAATCCTGACCGTTCACGCGTGCTGATGGTTGGCGACACTGCCGAGTCCGATATTCTCGGTGGCATCAA
CGCCGGGCTTGCGACCTGCTGGCTGAATGCACACCATCGCGAGCAACCAGAAGGCATCGCGCCCACCTGG
ACCGTTTCTTCGTTGCACGAACTGGAGCAGCTCCTGTGTAAACACTGA
# Upstream_100_bases:
ACGAGGCGACGATTCGCCGCAATTACTACCCCACCACGGACGGTCGCGAAGACGCCATCATCATGGCGTT
GCCAATCAGTATGTAATACAAGGTGGAATA
# Blattner_No_Ontology:
Putative enzymes
# Gene_Position:
4606669-4607346 (Clockwise)
# Centisome_Position:
99.289
# Gene_Name:
yjjG
# GC_Content:
53.54%
# Metabolic_Importance:
Unknown
# Preceding_Gene:
rimI
# Following_Gene:
prfC
# Operon_Status:
Yes
# Operon_Components:
rimI_yjjG Ref: RegulonDB http://kinich.cifn.unam.mx:8850/db/regulondb_cgi.query_simple?v_organism=ECK12&v_table=3&v_name=yjjG
# Paralogues:
None
# Copy Number:
Unknown
# RNA_Copy_No.:
Log phase (2max): 0.09
Stationary phase (2max): 0.11
Ref: Nature Biotech., 18, 1262-68, Dec. 2000 (PMID=11101804)
# Genbank_ID_(DNA):
G1790833
# Genbank_ID_(Protein):
AAC77327.1
# SWISS_PROT_(AC_&_ID):
$ YJJG_ECOLI (P0A8Y1)
# 2D_Gel_Image:
Not Available
# Other_Databases:
- ECOCYC: EG12115
- EcoGene: EG12115
- EMBL: D17724
- InterPro: IPR005834; IPR006439; IPR005833; IPR011951
- Pfam: PF00702
- PIR: S56598
- PRINTS: PR00413
# Pfam_Domain/Function:
PF00702 haloacid dehalogenase-like hydrolase
# Homologues:
Organism=Homo sapiens, GI23308749, Length=248, Positives=42%, Blast Score=68.9
Organism=Mus musculus, GI13385586, Length=248, Positives=52%, Blast Score=68.2
# Similarity:
Belongs to the HAD-like hydrolase superfamily. YjjG family.
# EC_Number:
3.1.3.5
# No._of_Amino_Acids:
225 (Translated Protein)
225 (Mature Protein)
# Molecular_Weight:
25301 25301
# Theoretical_pI:
4.53
# Theoretical_pI (Mature):
4.53
# Sequence:
// MKWDWIFFDADETLFTFDSFTGLQRMFLDYSVTFTAEDFQDYQAVNKPLWVDYQNGAITS
// LQLQHGRFESWAERLNVEPGKLNEAFINAMAEICTPLPGAVSLLNAIRGNAKIGIITNGF
// SALQQVRLERTGLRDYFDLLVISEEVGVAKPNKKIFDYALEQAGNPDRSRVLMVGDTAES
// DILGGINAGLATCWLNAHHREQPEGIAPTWTVSSLHELEQLLCKH
// /\
// MKWDWIFFDADETLFTFDSFTGLQRMFLDYSVTFTAEDFQDYQAVNKPLWVDYQNGAITS
// LQLQHGRFESWAERLNVEPGKLNEAFINAMAEICTPLPGAVSLLNAIRGNAKIGIITNGF
// SALQQVRLERTGLRDYFDLLVISEEVGVAKPNKKIFDYALEQAGNPDRSRVLMVGDTAES
// DILGGINAGLATCWLNAHHREQPEGIAPTWTVSSLHELEQLLCKH
# PROSITE_Motif:
Not Available
# Important_Sites:
Not Available
# Transmembrane:
Not Available
# Cys/Met_Content:
1.3 %Cys (Translated Protein)
1.8 %Met (Translated Protein)
3.1 %Cys+Met (Translated Protein)
1.3 %Cys (Mature Protein)
1.8 %Met (Mature Protein)
3.1 %Cys+Met (Mature Protein)
# Secondary_Structure_(PDB):
YIKGIAFDLYGTLFDVHSVVGRCDEAFPGRGREISALWRQKQLEYTWLRSL
CCEEEEEECCCCCCCHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHH
MNRYVNFQQATEDALRFTCRHLGLDLDARTRSTLCDAYLRLAPFSEVPDSL
HCCCCCHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHCEEECCCHHHHH
RELKRRGLKLAILSNGSPQSIDAVVSHAGLRDGFDHLLSVDPVQVYKPDNR
HHHHHHCEEEEEEECCCHHHHHHHHHHHCCCCCCEEEEECHHHCCCCCCHH
VYELAEQALGLDRSAILFVASNAWDATGARYFGFPTCWINRTGNVFEEMGQ
HHHHHHHCCCCCCCEEEEEECCHHHHHHHHHHCEEEEEEECCCCCCCCCCC
TPDWEVTSLRAVVELF
CCEEEECCHHHHHHHC
# PDB_Accession:
& Model Based on 1ZRM (97-222)
# Resolution:
Not Available
# Structure_CLASS:
Alpha Beta
# Quaternary_Structure:
Not Available
# Interacting_Partners:
Not Available
# Cofactors:
--Mn2+
# Metals_Ions:
Not Available
# Kcat_Value_[1/min]:
Not Available
# Specific_Activity_[micromol/min/mg]:
Not Available
# Km_Value_[mM]:
Not Available
# Substrates:
Not Available
# Products:
Not Available
# Specific_Reaction:
Not Available
# General_Reaction:
Not Available
# Inhibitor:
Not Available
# Priority:
1.0
# Status:
Not Available
# Availability:
Not Available
#END_ECARDFILE
#BEGIN_ECARDFILE
# Entry_ID:
CC3235A.1
# Accession_No.:
UA0003235
# Name:
Hypothetical protein ynaK
# Alternate_Names:
Not Available
# General_Function:
Not Available
# COG_Function:
Transcription (code K)
# COG_ID:
COG1475 Predicted transcriptional regulators (Evalue = 7e-44)
# Specific_Function:
Not Available
# Riley_Gene_Function:
Rac prophage; conserved protein
# Riley_Cell_Function:
>>>
extrachromosomal
Prophage genes and phage related functions
# Gene_Ontology:
>>>
Function: binding
Function: nucleic acid binding
Function: DNA binding
||
>>>
Process: Not Available
||
>>>
Component: Not Available
# Location:
Cytoplasm
# Blattner_Number:
b1365
# Gene_Sequence:
ATGAGCGAGAAATTAAAGATAGTCTATCGCCCATTACAAGAATTGTCACCGTATGCGCACAACGCCAGGA
CGCACAGTACTGAGCAGGTGGCACAACTGGTAGAAAGTATTAAGCAATTCGGCTGGACTAATCCGGTGCT
GATTGACGAAAAGGGCGAAATTATTGCGGGTCACGGTCGTGTTATGGCGGCTGAAATGCTCAAAATGGAT
TCTGTTCCGGTCATTGTTCTGTCTGGCCTGACGGATGAGCAGAAGCAGCGATAA
# Upstream_100_bases:
TTGACTCACTCATTGATCCAATACCTAACTTTACCAGCAACACCTCCGTCCCCAGTAGCACTGGCTGCTG
GGGTGCGTTTTATTCATAAAGCAAGGCTGT
# Blattner_No_Ontology:
Hypothetical, unclassified, unknown
# Gene_Position:
1423401-1423664 (Clockwise)
# Centisome_Position:
30.679
# Gene_Name:
ynaK
# GC_Content:
48.11%
# Metabolic_Importance:
Non_Essential
# Preceding_Gene:
b1364
# Following_Gene:
ydaY
# Operon_Status:
No
# Operon_Components:
None
# Paralogues:
None
# Copy Number:
Unknown
# RNA_Copy_No.:
Log phase (2max): 0.16
Stationary phase (2max): 0.96
Ref: Nature Biotech., 18, 1262-68, Dec. 2000 (PMID=11101804)
# Genbank_ID_(DNA):
G1787628
# Genbank_ID_(Protein):
AAC74447.1
# SWISS_PROT_(AC_&_ID):
$ YNAK_ECOLI (P76068)
# 2D_Gel_Image:
Not Available
# Other_Databases:
- ECOCYC: EG14296
- EcoGene: EG14296
- EMBL: U00096
- InterPro: IPR003115
- Pfam: PF02195
- PIR: H64886
# Pfam_Domain/Function:
PF02195 ParB-like nuclease domain;
# Homologues:
Not Available
# Similarity:
Not Available
# EC_Number:
Not Available
# No._of_Amino_Acids:
87 (Translated Protein)
86 (Mature Protein)
# Molecular_Weight:
9787 9656
# Theoretical_pI:
6.81
# Theoretical_pI (Mature):
6.81
# Sequence:
// MSEKLKIVYRPLQELSPYAHNARTHSTEQVAQLVESIKQFGWTNPVLIDEKGEIIAGHGR
// VMAAEMLKMDSVPVIVLSGLTDEQKQR
// /\
// SEKLKIVYRPLQELSPYAHNARTHSTEQVAQLVESIKQFGWTNPVLIDEKGEIIAGHGRV
// MAAEMLKMDSVPVIVLSGLTDEQKQR
# PROSITE_Motif:
Not Available
# Important_Sites:
Not Available
# Transmembrane:
Not Available
# Cys/Met_Content:
0.0 %Cys (Translated Protein)
4.6 %Met (Translated Protein)
4.6 %Cys+Met (Translated Protein)
0.0 %Cys (Mature Protein)
3.5 %Met (Mature Protein)
3.5 %Cys+Met (Mature Protein)
# Secondary_Structure:
>YNAK_ECOLI (Translated Protein)
MSEKLKIVYRPLQELSPYAHNARTHSTEQVAQLVESIKQFGWTNPVLIDEKGEIIAGHGR
CCCCEEEEECCHHHCCCCCCCCCCCCHHHHHHHHHHHHHCCCCCCEEECCCCEEEECCHH
VMAAEMLKMDSVPVIVLSGLTDEQKQR
HHHHHHHCCCCCCEEEECCCCHHHHCC
/\
>YNAK_ECOLI (Mature Protein)
SEKLKIVYRPLQELSPYAHNARTHSTEQVAQLVESIKQFGWTNPVLIDEKGEIIAGHGRV
CCCEEEEECCHHHCCCCCCCCCCCCHHHHHHHHHHHHHCCCCCCEEECCCCEEEECCHHH
MAAEMLKMDSVPVIVLSGLTDEQKQR
HHHHHHCCCCCCEEEECCCCHHHHCC
# PDB_Accession:
& Not Available
# Resolution:
Not Available
# Structure_CLASS:
Alpha Beta
# Quaternary_Structure:
Not Available
# Interacting_Partners:
1) DNA,
# Cofactors:
Not Available
# Metals_Ions:
Not Available
# Kcat_Value_[1/min]:
Not Available
# Specific_Activity_[micromol/min/mg]:
Not Available
# Km_Value_[mM]:
Not Available
# Substrates:
DNA
# Products:
Not Available
# Specific_Reaction:
Protein + DNA = Protein-DNA
# General_Reaction:
Not Available
# Inhibitor:
Not Available
# Priority:
9
# Status:
Not Available
# Availability:
Not Available
#END_ECARDFILE
#BEGIN_ECARDFILE
# Entry_ID:
CC1377A.1
# Accession_No.:
UA0001377
# Name:
L-rhamnose-proton symporter
# Alternate_Names:
L-rhamnose-H+
# General_Function:
Transport and binding proteins; Member of the Drug/Metabolite Transporter (DMT) Superfamily
# COG_Function:
Carbohydrate transport and metabolism (code G)
# COG_ID:
COG0697 Permeases of the drug/metabolite transporter (DMT) superfamily (Evalue = 0.0)
# Specific_Function:
Uptake of L-rhamnose across the boundary membrane with the concomitant transport of protons into the cell (symport system). Can also transport L-mannose and L-xylose, but at reduced rates.
# Riley_Gene_Function:
L-rhamnose:H+ symporter (DMT superfamily)
# Riley_Cell_Function:
>>>
Metabolism
Carbon compound utilization
Carbohydrates/Carbon compounds
||
>>>
Transport
Electrochemical potential driven transporters
Porters (Uni-, Sym- and Antiporters)
The Drug/Metabolite Transporter (DMT) Superfamily
||
>>>
Transport
substrate
L-rhamnose/H+
||
>>>
Cell structure
Membrane
||
>>>
Location of gene products
Inner membrane
# Gene_Ontology:
>>>
Function: transporter activity
Function: carbohydrate transporter activity
Function: sugar transporter activity
Function: monosaccharide transporter activity
Function: hexose transporter activity
Function: rhamnose transporter activity
||
>>>
Function: transporter activity
Function: carbohydrate transporter activity
Function: sugar transporter activity
Function: monosaccharide transporter activity
Function: hexose transporter activity
Function: rhamnose transporter activity
||
>>>
Process: physiological process
Process: cellular physiological process
Process: transport
Process: carbohydrate transport
Process: monosaccharide transport
Process: hexose transport
||
>>>
Process: localization
Process: establishment of localization
Process: transport
Process: carbohydrate transport
Process: monosaccharide transport
Process: hexose transport
||
>>>
Process: cellular process
Process: cellular physiological process
Process: transport
Process: carbohydrate transport
Process: monosaccharide transport
Process: hexose transport
Process: physiological process
Process: cellular physiological process
Process: transport
Process: carbohydrate transport
Process: monosaccharide transport
Process: hexose transport
Process: rhamnose transport
||
>>>
Process: localization
Process: establishment of localization
Process: transport
Process: carbohydrate transport
Process: monosaccharide transport
Process: hexose transport
Process: rhamnose transport
||
>>>
Process: cellular process
Process: cellular physiological process
Process: transport
Process: carbohydrate transport
Process: monosaccharide transport
Process: hexose transport
Process: rhamnose transport
||
>>>
Component: cell
Component: membrane
Component: intrinsic to membrane
Component: integral to membrane
||
>>>
Component: cell
Component: external encapsulating structure
Component: cell wall
Component: cell wall (sensu Bacteria)
Component: cell wall (sensu Proteobacteria)
||
>>>
Component: cell envelope
Component: cell wall (sensu Proteobacteria)
||
>>>
Component: envelope
Component: cell envelope
Component: cell wall (sensu Proteobacteria)
# Location:
Integral Membrane Protein. Inner Membrane
# Blattner_Number:
b3907
# Gene_Sequence:
ATGAGTAACGCGATTACGATGGGGATATTTTGGCATTTGATCGGCGCGGCCAGTGCAGCCTGTTTTTACG
CTCCGTTCAAAAAAGTAAAAAAATGGTCATGGGAAACCATGTGGTCAGTCGGTGGGATTGTTTCGTGGAT
TATTCTGCCGTGGGCCATCAGCGCCCTGTTACTACCGAATTTCTGGGCGTATTACAGCTCGTTTAGTCTC
TCTACGCGACTGCCTGTTTTTCTGTTCGGCGCTATGTGGGGGATCGGTAATATCAACTACGGCCTGACCA
TGCGTTATCTCGGCATGTCGATGGGAATTGGCATCGCCATTGGCATTACGTTGATTGTCGGTACGCTGAT
GACGCCAATTATCAACGGCAATTTCGATGTGTTGATTAGCACCGAAGGCGGACGCATGACGTTGCTCGGC
GTTCTGGTGGCGCTGATTGGCGTAGGGATTGTAACTCGCGCCGGGCAGTTGAAAGAGCGCAAGATGGGCA
TTAAAGCCGAAGAGTTCAATCTGAAAAAAGGGCTGGTGCTGGCGGTGATGTGCGGCATTTTCTCTGCCGG
GATGTCCTTTGCGATGAACGCCGCAAAACCGATGCATGAAGCCGCTGCCGCACTTGGCGTCGATCCACTG
TATGTCGCTCTGCCAAGCTATGTTGTCATCATGGGCGGCGGCGCGATCATTAACCTCGGTTTCTGTTTTA
TTCGTCTGGCAAAAGTGAAGGATTTGTCGCTAAAAGCCGACTTCTCGCTGGCAAAATCGCTGATCATTCA
CAATGTGTTACTCTCGACACTGGGCGGGTTGATGTGGTATCTGCAATTCTTTTTCTATGCCTGGGGCCAC
GCCCGCATTCCGGCGCAGTATGACTACATCAGTTGGATGCTGCATATGAGTTTCTATGTATTGTGCGGCG
GTATCGTCGGGCTGGTGCTGAAAGAGTGGAACAATGCAGGACGCCGTCCGGTAACGGTGTTGAGCCTCGG
TTGTGTGGTGATTATTGTCGCCGCTAACATCGTCGGCATCGGCATGGCGAATTAA
# Upstream_100_bases:
TCGACAACGGCGGCAACAGGCGAAAGGTTAATCGACAGCACGATTTTTACACTCATCTCGTCGGAGATGT
GACGCGACGAAAAATGATGAGGATAAGAAG
# Blattner_No_Ontology:
Transport and binding proteins
# Gene_Position:
4097514-4098548 (Counter Clockwise)
# Centisome_Position:
88.337
# Gene_Name:
rhaT
# GC_Content:
51.69%
# Metabolic_Importance:
Non_Essential
# Preceding_Gene:
rhaR
# Following_Gene:
sodA
# Operon_Status:
No
# Operon_Components:
None
# Paralogues:
None
# Copy Number:
Unknown
# RNA_Copy_No.:
Log phase (2max): 0.04
Stationary phase (2max): 0.14
Ref: Nature Biotech., 18, 1262-68, Dec. 2000 (PMID=11101804)
# Genbank_ID_(DNA):
G1790341
# Genbank_ID_(Protein):
AAC76889.1
# SWISS_PROT_(AC_&_ID):
$ RHAT_ECOLI (P27125)
# 2D_Gel_Image:
Not Available
# Other_Databases:
- ECOCYC: EG11313
- EcoGene: EG11313
- EMBL: M85158
- InterPro: IPR004673; IPR010476
- Pfam: PF06379
- PIR: B42436
# Pfam_Domain/Function:
PF06379 L-rhamnose-proton symport protein (RhaT);
# Homologues:
Not Available
# Similarity:
Belongs to the L-rhamnose transporter (TC 2.A.7.6) family.
# EC_Number:
Not Available
# No._of_Amino_Acids:
344 (Translated Protein)
325 (Mature Protein)
# Molecular_Weight:
37320 35347
# Theoretical_pI:
9.89
# Theoretical_pI (Mature):
9.89
# Sequence:
// MSNAITMGIFWHLIGAASAACFYAPFKKVKKWSWETMWSVGGIVSWIILPWAISALLLPN
// FWAYYSSFSLSTRLPVFLFGAMWGIGNINYGLTMRYLGMSMGIGIAIGITLIVGTLMTPI
// INGNFDVLISTEGGRMTLLGVLVALIGVGIVTRAGQLKERKMGIKAEEFNLKKGLVLAVM
// CGIFSAGMSFAMNAAKPMHEAAAALGVDPLYVALPSYVVIMGGGAIINLGFCFIRLAKVK
// DLSLKADFSLAKSLIIHNVLLSTLGGLMWYLQFFFYAWGHARIPAQYDYISWMLHMSFYV
// LCGGIVGLVLKEWNNAGRRPVTVLSLGCVVIIVAANIVGIGMAN
// /\
// ACFYAPFKKVKKWSWETMWSVGGIVSWIILPWAISALLLPNFWAYYSSFSLSTRLPVFLF
// GAMWGIGNINYGLTMRYLGMSMGIGIAIGITLIVGTLMTPIINGNFDVLISTEGGRMTLL
// GVLVALIGVGIVTRAGQLKERKMGIKAEEFNLKKGLVLAVMCGIFSAGMSFAMNAAKPMH
// EAAAALGVDPLYVALPSYVVIMGGGAIINLGFCFIRLAKVKDLSLKADFSLAKSLIIHNV
// LLSTLGGLMWYLQFFFYAWGHARIPAQYDYISWMLHMSFYVLCGGIVGLVLKEWNNAGRR
// PVTVLSLGCVVIIVAANIVGIGMAN
# PROSITE_Motif:
Not Available
# Important_Sites:
Not Available
# Transmembrane:
Transmembrane 6 26 Probable
Transmembrane 37 57 Probable
Transmembrane 62 82 Probable
Transmembrane 97 117 Probable
Transmembrane 131 152 Probable
Transmembrane 175 195 Probable
Transmembrane 209 229 Probable
Transmembrane 255 275 Probable
Transmembrane 290 310 Probable
Transmembrane 322 342 Probable
# Cys/Met_Content:
1.5 %Cys (Translated Protein)
5.5 %Met (Translated Protein)
7.0 %Cys+Met (Translated Protein)
1.5 %Cys (Mature Protein)
5.2 %Met (Mature Protein)
6.8 %Cys+Met (Mature Protein)
# Secondary_Structure:
>RHAT_ECOLI (Translated Protein)
MSNAITMGIFWHLIGAASAACFYAPFKKVKKWSWETMWSVGGIVSWIILPWAISALLLPN
CCCCCHHHHHHHHHHHHHHHHHHHHCCCHHHHHCCCHHHHHHHHHHHHHHHHHHHHCCCC
NFWAYYSSFSLSTRLPVFLFGAMWGIGNINYGLTMRYLGMSMGIGIAIGITLIVGTLMTP
CCHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCEECCCHHHHHHHHHHHHHHHHHHHHCCC
PIINGNFDVLISTEGGRMTLLGVLVALIGVGIVTRAGQLKERKMGIKAEEFNLKKGLVLA
CEECCCEEECCCHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHCCCCHHHCCCCCCHHHH
AVMCGIFSAGMSFAMNAAKPMHEAAAALGVDPLYVALPSYVVIMGGGAIINLGFCFIRLA
HHHHHHHHHHHHHHHHHCCCHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHCCCEEEEEE
AKVKDLSLKADFSLAKSLIIHNVLLSTLGGLMWYLQFFFYAWGHARIPAQYDYISWMLHM
EEEEEEEEEECCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCHHHHHHH
MSFYVLCGGIVGLVLKEWNNAGRRPVTVLSLGCVVIIVAANIVGIGMAN
HHHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHCCC
/\
>RHAT_ECOLI (Mature Protein)
SNAITMGIFWHLIGAASAACFYAPFKKVKKWSWETMWSVGGIVSWIILPWAISALLLPNF
CCCCHHHHHHHHHHHHHHHHHHHHCCCHHHHHCCCHHHHHHHHHHHHHHHHHHHHCCCCC
FWAYYSSFSLSTRLPVFLFGAMWGIGNINYGLTMRYLGMSMGIGIAIGITLIVGTLMTPI
CHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCEECCCHHHHHHHHHHHHHHHHHHHHCCCE
IINGNFDVLISTEGGRMTLLGVLVALIGVGIVTRAGQLKERKMGIKAEEFNLKKGLVLAV
EECCCEEECCCHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHCCCCHHHCCCCCCHHHHH
VMCGIFSAGMSFAMNAAKPMHEAAAALGVDPLYVALPSYVVIMGGGAIINLGFCFIRLAK
HHHHHHHHHHHHHHHHCCCHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHCCCEEEEEEE
KVKDLSLKADFSLAKSLIIHNVLLSTLGGLMWYLQFFFYAWGHARIPAQYDYISWMLHMS
EEEEEEEEECCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCHHHHHHHH
SFYVLCGGIVGLVLKEWNNAGRRPVTVLSLGCVVIIVAANIVGIGMAN
HHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHCCC
# PDB_Accession:
& Not Available
# Resolution:
Not Available
# Structure_CLASS:
Mainly Alpha
# Quaternary_Structure:
Not Available
# Interacting_Partners:
Unknown
# Cofactors:
Not Available
# Metals_Ions:
Not Available
# Kcat_Value_[1/min]:
Not Available
# Specific_Activity_[micromol/min/mg]:
Not Available
# Km_Value_[mM]:
Not Available
# Substrates:
Proton [Periplasm] + L-rhamnose [Periplasm]
# Products:
Proton [Cytoplasm] + L-rhamnose [Cytoplasm]
# Specific_Reaction:
Proton [Periplasm] + L-rhamnose [Periplasm] = Proton [Cytoplasm] + L-rhamnose [Cytoplasm]
# General_Reaction:
Not Available
# Inhibitor:
Not Available
# Priority:
3.1
# Status:
Selected, Cloned
# Availability:
Montreal-Kingston Bacterial Structural Genomics Initiative
#END_ECARDFILE
#BEGIN_ECARDFILE
# Entry_ID:
CC3538A.1
# Accession_No.:
UA0003538
# Name:
3-phenylpropionate dioxygenase beta subunit
# Alternate_Names:
Digoxigenin beta subunit
# General_Function:
Energy metabolism; NTF2-like
# COG_Function:
Secondary metabolites biosynthesis, transport and catabolism (code Q)
# COG_ID:
COG5517 Small subunit of phenylpropionate dioxygenase (Evalue = 3e-97)
# Specific_Function:
Part of the multicomponent 3-phenylpropionate dioxygenase. Converts 3-phenylpropionic acid (PP) into cis-3-(3- carboxyethyl)-3,5-cyclohexadiene-1,2-diol (PP-dihydrodiol).
# Riley_Gene_Function:
3-phenylpropionate dioxygenase, beta subunit
# Riley_Cell_Function:
>>>
Metabolism
Carbon compound utilization
Fatty acids (fatty acid oxidation)
3-phenylpropionate and 3-(3-hydroxyphenyl)propionate degradation
# Gene_Ontology:
>>>
Function: catalytic activity
||
>>>
Process: physiological process
Process: metabolism
Process: cellular metabolism
Process: generation of precursor metabolites and energy
Process: electron transport
||
>>>
Process: cellular physiological process
Process: transport
Process: electron transport
||
>>>
Process: cellular metabolism
Process: generation of precursor metabolites and energy
Process: electron transport
||
>>>
Process: localization
Process: establishment of localization
Process: transport
Process: electron transport
||
>>>
Process: cellular process
Process: cellular physiological process
Process: transport
Process: electron transport
||
>>>
Process: cellular metabolism
Process: generation of precursor metabolites and energy
Process: electron transport
||
>>>
Component: Not Available
# Location:
Cytoplasm
# Blattner_Number:
b2539
# Gene_Sequence:
ATGAGTGCGCAAGTTTCACTAGAGTTACATCACCGCATTAGCCAGTTTCTCTTTCACGAAGCCAGCTTAC
TGGACGACTGGAAATTTCGTGACTGGCTGGCGCAGCTCGACGAAGAGATTCGTTACACCATGCGCACCAC
AGTTAACGCGCAAACACGCGACCGCCGCAAAGGCGTCCAGCCACCGACAACCTGGATTTTTAATGACACC
AAAGACCAGCTGGAGCGGCGAATCGCCCGTCTGGAAACGGGCATGGCCTGGGCAGAAGAGCCGCCGTCAC
GCACCCGTCACTTAATCAGCAACTGCCAGATAAGCGAAACCGACATCCCAAACGTATTTGCTGTGCGGGT
AAATTATCTGCTTTATCGGGCACAAAAAGAGCGCGATGAAACATTCTATGTTGGAACGCGTTTCGACAAA
GTTCGCCGTCTGGAAGATGACAACTGGCGCTTGCTGGAACGGGATATCGTCCTGGATCAAGCGGTAATCA
CTTCCCATAACCTGAGTGTACTGTTCTGA
# Upstream_100_bases:
CCGCTCGTGGAATGTACCAACGCTGGGCCGATCTTCTGAGTAGCGAAAGCTGGCAGGAAGTGCTCGATAA
AACCGCCGCTTACCAGCAGGAGGTGATGAA
# Blattner_No_Ontology:
Central intermediary metabolism
# Gene_Position:
2668412-2668930 (Clockwise)
# Centisome_Position:
57.513
# Gene_Name:
hcaF or digB or hcaA2 or hcaB or phdC2
# GC_Content:
52.22%
# Metabolic_Importance:
Unknown
# Preceding_Gene:
hcaE
# Following_Gene:
hcaC
# Operon_Status:
Yes
# Operon_Components:
hcaA1_hcaA2_hcaC_hcaB_hcaD Ref: RegulonDB http://kinich.cifn.unam.mx:8850/db/regulondb_cgi.query_simple?v_organism=ECK12&v_table=3&v_name=hcaB
# Paralogues:
None
# Copy Number:
Unknown
# RNA_Copy_No.:
Log phase (2max): 0.04
Stationary phase (2max): 0.07
Ref: Nature Biotech., 18, 1262-68, Dec. 2000 (PMID=11101804)
# Genbank_ID_(DNA):
G1788889
# Genbank_ID_(Protein):
AAC75592.1
# SWISS_PROT_(AC_&_ID):
$ HCAF_ECOLI (Q47140)
# 2D_Gel_Image:
Not Available
# Other_Databases:
- ECOCYC: EG13457
- EcoGene: EG13457
- EMBL: U00096
- InterPro: IPR000391
- Pfam: PF00866
- PIR: B65031
# Pfam_Domain/Function:
PF00866 Ring hydroxylating beta subunit
# Homologues:
Not Available
# Similarity:
Belongs to the bacterial ring-hydroxylating dioxygenase beta subunit family.
# EC_Number:
1.14.12.19
# No._of_Amino_Acids:
172 (Translated Protein)
171 (Mature Protein)
# Molecular_Weight:
20579 20448
# Theoretical_pI:
6.69
# Theoretical_pI (Mature):
6.69
# Sequence:
// MSAQVSLELHHRISQFLFHEASLLDDWKFRDWLAQLDEEIRYTMRTTVNAQTRDRRKGVQ
// PPTTWIFNDTKDQLERRIARLETGMAWAEEPPSRTRHLISNCQISETDIPNVFAVRVNYL
// LYRAQKERDETFYVGTRFDKVRRLEDDNWRLLERDIVLDQAVITSHNLSVLF
// /\
// SAQVSLELHHRISQFLFHEASLLDDWKFRDWLAQLDEEIRYTMRTTVNAQTRDRRKGVQP
// PTTWIFNDTKDQLERRIARLETGMAWAEEPPSRTRHLISNCQISETDIPNVFAVRVNYLL
// YRAQKERDETFYVGTRFDKVRRLEDDNWRLLERDIVLDQAVITSHNLSVLF
# PROSITE_Motif:
Not Available
# Important_Sites:
Not Available
# Transmembrane:
Not Available
# Cys/Met_Content:
0.6 %Cys (Translated Protein)
1.7 %Met (Translated Protein)
2.3 %Cys+Met (Translated Protein)
0.6 %Cys (Mature Protein)
1.2 %Met (Mature Protein)
1.8 %Cys+Met (Mature Protein)
# Secondary_Structure_(PDB):
MNYNNKILVSESGLSQKHLIHGDEELFQHELKTIFARNWLFLTHDSLIPAP
CCCCCCCEEECCCCEEEHHHHCCHHHHHHHHHHHHHCEEEEEEECCCCCCC
GDYVTAKMGIDEVIVSRQNDGSIRAFLNVCRHRGKTLVSVEAGNAKGFVCS
CEEEEEECCCEEEEEEECCCCEEEEEEEEECCCCEEECCCEEEEEEEEEEC
YHGWGFGSNGELQSVPFEKDLYGESLNKKCLGLKEVARVESFHGFIYGCFD
CCCEEEECCCCCEEEECHHHHCCCCCCHHHEEEEEECEEEECCCEEEEECC
QEAPPLMDYLGDAAWYLEPMFKHSGGLELVGPPGKVVIKANWKAPAENFVG
CCCCCHHHHHCCHHHHHHHHHHCCCCEEEEECEEEEEECCCCHHHHHHHHC
DAYHVGWTHASSLRSGESIFSSLAGNAALPPEGAGLQMTSKYGSGMGVLWD
CCCCCCCCCHHHHHHHCCCCCCCCCCCCCCCCCCCEEEEECCCEEEEEEEC
GYSGVHSADLVPELMAFGGAKQERLNKEIGDVRARIYRSHLNCTVFPNNSM
CCCCCCCHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHEEEEEEEEECEEEE
LTCSGVFKVWNPIDANTTEVWTYAIVEKDMPEDLKRRLADSVQRTFGPAGF
EECCCEEEEEECCCCEEEEEEEEEEEECCCCHHHHHHHHHHHHHHHCCCHH
WESDDNDNMETASQNGKKYQSRDSDLLSNLGFGEDVYGDAVYPGVVGKSAI
HHHHHHHHHHHHHHHHHCCCCCCEEEEECCCCCCEEECCCCCCCEEECCCC
GETSYRGFYRAYQAHVSSSNWAEFEHASSTWHTELTKTTMINIQEDKLVSA
CCHHHHHHHHHHHHHHHCCCHHHHHHHCCCHHHHHHHCCCCCCCCCCCCCH
HDAEEILRFFNCHDSALQQEATTLLTQEAHLLDIQAYRAWLEHCVGSEVQY
HHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHCHHHHHHHHCCCCCEEE
QVISRELRAASERRYKLNEAMNVYNENFQQLKVRVEHQLDPQNWGNSPKLR
EEEEEEECCCCCCCCCCCCEEEEEEECHHHHHHHHHHHHCCCCCCCCCCEE
FTRFITNVQAAMDVNDKELLHIRSNVILHRARRGNQVDVFYAAREDKWKRG
EEEEEECEEEEEECCCCCEEEEEEEEEEEEEECCCEEEEEEEEEEEEEEEC
EGGVRKLVQRFVDYPERILQTHNLMVFL
CCCEEEEEEEEEEECCCEEECCCCCCCC
# PDB_Accession:
& Model Based on 1O7P (1-169)
# Resolution:
Not Available
# Structure_CLASS:
Alpha Beta
# Quaternary_Structure:
heterotetrameric complex of hcaF and hcaE and hcaC and hcaD
# Interacting_Partners:
1) hcaE, 2) hcaC, 3) hcaD,
# Cofactors:
Not Available
# Metals_Ions:
Not Available
# Kcat_Value_[1/min]:
Not Available
# Specific_Activity_[micromol/min/mg]:
Not Available
# Km_Value_[mM]:
Not Available
# Substrates:
NADH + Proton + O2 + 3-phenylpropionate
# Products:
NAD + cis-3-(carboxyethyl)-3,5-cyclohexadiene-1,2-diol
# Specific_Reaction:
3-phenylpropionate + NADH + Proton + O2 = cis-3-(carboxyethyl)-3,5-cyclohexadiene-1,2-diol + NAD
3-phenylpropionate + NADH + O2 = cis-3-(carboxyethyl)-3,5-cyclohexadiene-1,2-diol + NAD
# General_Reaction:
Not Available
# Inhibitor:
Not Available
# Priority:
1.0
# Status:
Not Available
# Availability:
Not Available
#END_ECARDFILE
#BEGIN_ECARDFILE
# Entry_ID:
CC2553A.1
# Accession_No.:
UA0002553
# Name:
Protein dsrB
# Alternate_Names:
Not Available
# General_Function:
Not Available
# COG_Function:
Not Available
# COG_ID:
Not Available
# Specific_Function:
Not Available
# Riley_Gene_Function:
regulatory RNA; regulated by DsrA and HNS, under control of RpoS
# Riley_Cell_Function:
>>>
Regulation
Type of regulation
Posttranscriptional
Antisense RNA
||
>>>
Location of gene products
Cytoplasm
# Gene_Ontology:
>>>
Function: Not Available
||
>>>
Process: Not Available
||
>>>
Component: Not Available
# Location:
Cytoplasm
# Blattner_Number:
b1952
# Gene_Sequence:
ATGAAGGTGAATGATCGGGTAACAGTCAAAACGGATGGCGGTCCGCGTCGTCCTGGCGTGGTACTGGCAG
TTGAGGAGTTTAGTGAAGGCACAATGTACCTGGTTTCGCTGGAAGACTACCCGCTCGGCATCTGGTTCTT
TAATGAAGCAGGGCATCAGGACGGTATCTTTGTGGAGAAAGCAGAGTAA
# Upstream_100_bases:
TTAAGTATAGACCGTCGAGAAAATCAGCACTCGCGCGCGCCTGGCGCTGCCAGAAAAACGAAATTGTTCT
ACACTGGCACAAAGCCACAGGAGGAAAACG
# Blattner_No_Ontology:
Hypothetical, unclassified, unknown
# Gene_Position:
2022659-2022847 (Counter Clockwise)
# Centisome_Position:
43.599
# Gene_Name:
dsrB
# GC_Content:
51.32%
# Metabolic_Importance:
Non_Essential
# Preceding_Gene:
rcsA
# Following_Gene:
yodD
# Operon_Status:
No
# Operon_Components:
None
# Paralogues:
None
# Copy Number:
Unknown
# RNA_Copy_No.:
Log phase (2max): 0.14
Stationary phase (2max): 0.21
Ref: Nature Biotech., 18, 1262-68, Dec. 2000 (PMID=11101804)
# Genbank_ID_(DNA):
G1788263
# Genbank_ID_(Protein):
AAC75019.1
# SWISS_PROT_(AC_&_ID):
$ DSRB_ECOLI (P0AEG8)
# 2D_Gel_Image:
Not Available
# Other_Databases:
- ECOCYC: EG12636
- EcoGene: EG12636
- EMBL: U17136
- PIR: I59352
# Pfam_Domain/Function:
None
# Homologues:
Not Available
# Similarity:
Belongs to the dsrB family.
# EC_Number:
Not Available
# No._of_Amino_Acids:
62 (Translated Protein)
62 (Mature Protein)
# Molecular_Weight:
6946 6946
# Theoretical_pI:
4.30
# Theoretical_pI (Mature):
4.30
# Sequence:
// MKVNDRVTVKTDGGPRRPGVVLAVEEFSEGTMYLVSLEDYPLGIWFFNEAGHQDGIFVEK
// AE
// /\
// MKVNDRVTVKTDGGPRRPGVVLAVEEFSEGTMYLVSLEDYPLGIWFFNEAGHQDGIFVEK
// AE
# PROSITE_Motif:
Not Available
# Important_Sites:
Not Available
# Transmembrane:
Not Available
# Cys/Met_Content:
0.0 %Cys (Translated Protein)
3.2 %Met (Translated Protein)
3.2 %Cys+Met (Translated Protein)
0.0 %Cys (Mature Protein)
3.2 %Met (Mature Protein)
3.2 %Cys+Met (Mature Protein)
# Secondary_Structure:
>DSRB_ECOLI (Translated Protein)
MKVNDRVTVKTDGGPRRPGVVLAVEEFSEGTMYLVSLEDYPLGIWFFNEAGHQDGIFVEK
CCCCCEEEEECCCCCCCCCEEEEEHHCCCCCEEEEECCCCCEEEEEECCCCCCCCEEEEC
AE
CC
/\
>DSRB_ECOLI (Mature Protein)
KVNDRVTVKTDGGPRRPGVVLAVEEFSEGTMYLVSLEDYPLGIWFFNEAGHQDGIFVEKA
CCCCEEEEECCCCCCCCCEEEEEHHCCCCCEEEEECCCCCEEEEEECCCCCCCCEEEECC
E
C
# PDB_Accession:
& Not Available
# Resolution:
Not Available
# Structure_CLASS:
Mainly Beta
# Quaternary_Structure:
Not Available
# Interacting_Partners:
Not Available
# Cofactors:
Not Available
# Metals_Ions:
Not Available
# Kcat_Value_[1/min]:
Not Available
# Specific_Activity_[micromol/min/mg]:
Not Available
# Km_Value_[mM]:
Not Available
# Substrates:
Not Available
# Products:
Not Available
# Specific_Reaction:
Not Available
# General_Reaction:
Not Available
# Inhibitor:
Not Available
# Priority:
7.6
# Status:
Selected, Cloned, Expressed, Soluble, Purified
# Availability:
Montreal-Kingston Bacterial Structural Genomics Initiative
#END_ECARDFILE
#BEGIN_ECARDFILE
# Entry_ID:
CC2098A.1
# Accession_No.:
UA0002098
# Name:
Attaching and effacing protein homolog precursor
# Alternate_Names:
Not Available
# General_Function:
Cell envelope
# COG_Function:
Not Available
# COG_ID:
Not Available
# Specific_Function:
Genes eaeH-b0298-tra5_5 are regulated by transcriptional attenuation.
# Riley_Gene_Function:
outer membrane protein important for attachment to cell, pathogenesis factor
# Riley_Cell_Function:
>>>
Cell structure
Membrane
||
>>>
Location of gene products
Outer membrane
# Gene_Ontology:
>>>
Function: Not Available
||
>>>
Process: cellular process
Process: cell adhesion
||
>>>
Component: Not Available
# Location:
Outer Membrane
# Blattner_Number:
b0297
# Gene_Sequence:
ATGTCACATTATAAAACAGGTCATAAACAACCACGATTTCGTTATTCAGTTCTGGCCCGCTGCGTGGCGT
GGGCAAATATCTCTGTTCAGGTTCTTTTTCCACTCGCTGTCACCTTTACCCCAGTAATGGCGGCACGTGC
GCAGCATGCGGTTCAGCCACGGTTGAGCATGGGAAATACTACGGTAACTGCTGATAATAACGTGGAGAAA
AATGTCGCGTCGTTTGCCGCAAATGCCGGGACATTTTTAAGCAGTCAGCCAGATAGCGATGCGACACGTA
ACTTTATTACCGGAATGGCCACAGCTAAAGCTAACCAGGAAATACAGGAGTGGCTCGGGAAATATGGTAC
TGCGCGCGTCAAACTGAATGTCGATAAAGATTTCTCGCTGAAGGATTCTTCGCTGGAAATGCTTTATCCG
ATTTATGATACGCCGACAAATATGTTGTTCACTCAGGGGGCAATACATCGTACAGACGATCGTACTCAGT
CAAATATTGGTTTTGGCTGGCGTCATTTTTCAGGAAATGACTGGATGGCGGGGGTGAATACTTTTATCGA
TCATGATTTATCCCGTAGTCATACCCGCATTGGTGTTGGTGCGGAATACTGGCGCGATTATCTGAAACTG
AGCGCCAATGGTTATATTCGGGCTTCTGGCTGGAAAAAATCGCCGGATATTGAGGATTATCAGGAACGCC
CGGCGAATGGCTGGGATATTCGTGCTGAGGGCTATTTACCCGCCTGGCCGCAGCTTGGCGCAAGCCTGAT
GTATGAACAGTATTATGGCGATGAAGTCGGGCTGTTTGGTAAAGATAAGCGCCAGAAAGACCCGCATGCT
ATTTCTGCCGAGGTGACCTATACGCCAGTGCCTCTTACCCAGCAATAG
# Upstream_100_bases:
CGGAAAAGGAAATCGGGAAATCCCCGGTTTTTCTGACAAGCAGACGCCATTATTTGTGTCTGCCTATGTT
CGTTAATTCGTTCATCAGGAAATTATCTCA
# Blattner_No_Ontology:
Structural proteins
# Gene_Position:
313581-314468 (Clockwise)
# Centisome_Position:
6.759
# Gene_Name:
eaeH
# GC_Content:
48.31%
# Metabolic_Importance:
Non_Essential
# Preceding_Gene:
rpmE2
# Following_Gene:
insE1
# Operon_Status:
No
# Operon_Components:
None
# Paralogues:
None
# Copy Number:
Unknown
# RNA_Copy_No.:
Log phase (2max): 1.11
Stationary phase (2max): 0.26
Ref: Nature Biotech., 18, 1262-68, Dec. 2000 (PMID=11101804)
# Genbank_ID_(DNA):
G1786488
# Genbank_ID_(Protein):
AAC73400.1
# SWISS_PROT_(AC_&_ID):
$ EAEH_ECOLI (P36943)
# 2D_Gel_Image:
Not Available
# Other_Databases:
- ECOCYC: EG12161
- EcoGene: EG12161
- EMBL: U73857
- InterPro: IPR003535
- PIR: A64756
- PRINTS: PR01369
# Pfam_Domain/Function:
None
# Homologues:
Not Available
# Similarity:
Belongs to the intimin/invasin family.
# EC_Number:
Not Available
# No._of_Amino_Acids:
295 (Translated Protein)
251 (Mature Protein)
# Molecular_Weight:
33175 28170
# Theoretical_pI:
8.37
# Theoretical_pI (Mature):
6.25
# Sequence:
// MSHYKTGHKQPRFRYSVLARCVAWANISVQVLFPLAVTFTPVMAARAQHAVQPRLSMGNT
// TVTADNNVEKNVASFAANAGTFLSSQPDSDATRNFITGMATAKANQEIQEWLGKYGTARV
// KLNVDKDFSLKDSSLEMLYPIYDTPTNMLFTQGAIHRTDDRTQSNIGFGWRHFSGNDWMA
// GVNTFIDHDLSRSHTRIGVGAEYWRDYLKLSANGYIRASGWKKSPDIEDYQERPANGWDI
// RAEGYLPAWPQLGASLMYEQYYGDEVGLFGKDKRQKDPHAISAEVTYTPVPLTQQ
// /\
// ARAQHAVQPRLSMGNTTVTADNNVEKNVASFAANAGTFLSSQPDSDATRNFITGMATAKA
// NQEIQEWLGKYGTARVKLNVDKDFSLKDSSLEMLYPIYDTPTNMLFTQGAIHRTDDRTQS
// NIGFGWRHFSGNDWMAGVNTFIDHDLSRSHTRIGVGAEYWRDYLKLSANGYIRASGWKKS
// PDIEDYQERPANGWDIRAEGYLPAWPQLGASLMYEQYYGDEVGLFGKDKRQKDPHAISAE
// VTYTPVPLTQQ
# PROSITE_Motif:
Not Available
# Important_Sites:
Signal Chain 1 25
# Transmembrane:
Transmembrane 22 41
# Cys/Met_Content:
0.3 %Cys (Translated Protein)
2.7 %Met (Translated Protein)
3.1 %Cys+Met (Translated Protein)
0.0 %Cys (Mature Protein)
2.4 %Met (Mature Protein)
2.4 %Cys+Met (Mature Protein)
# Secondary_Structure:
>EAEH_ECOLI (Translated Protein)
MSHYKTGHKQPRFRYSVLARCVAWANISVQVLFPLAVTFTPVMAARAQHAVQPRLSMGNT
CCCCCCCCCCCCCHHHHHHHHHHHCCEEEEEEEEEEEEEECCCCCCHHHCCCCCCCCCCC
TVTADNNVEKNVASFAANAGTFLSSQPDSDATRNFITGMATAKANQEIQEWLGKYGTARV
CCCCCCCHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCEEE
KLNVDKDFSLKDSSLEMLYPIYDTPTNMLFTQGAIHRTDDRTQSNIGFGWRHFSGNDWMA
EEEECCCCCCCCCEEEEEEEEECCCCEEEEEEECCEEECCCEEEEEEEEEEECCCCCEEE
GVNTFIDHDLSRSHTRIGVGAEYWRDYLKLSANGYIRASGWKKSPDIEDYQERPANGWDI
EEEEEEEECCCCCCCEEHHHHHHHHHHHHHEEEEEECCCCCCCCCCCCHHHHCCCCCCCE
RAEGYLPAWPQLGASLMYEQYYGDEVGLFGKDKRQKDPHAISAEVTYTPVPLTQQ
EEEECCCCCCCCCCEEEEEEEECCEEEEECCCCCEECCEEEEEEEEEECCCCCCC
/\
>EAEH_ECOLI (Mature Protein)
NISVQVLFPLAVTFTPVMAARAQHAVQPRLSMGNTTVTADNNVEKNVASFAANAGTFLSS
CEEEEEEEEEEEEEECCCCCCHHHCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHH
QPDSDATRNFITGMATAKANQEIQEWLGKYGTARVKLNVDKDFSLKDSSLEMLYPIYDTP
CCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCEEEEEEECCCCCCCCCEEEEEEEEECCC
TNMLFTQGAIHRTDDRTQSNIGFGWRHFSGNDWMAGVNTFIDHDLSRSHTRIGVGAEYWR
CEEEEEEECCEEECCCEEEEEEEEEEECCCCCEEEEEEEEEEECCCCCCCEEHHHHHHHH
DYLKLSANGYIRASGWKKSPDIEDYQERPANGWDIRAEGYLPAWPQLGASLMYEQYYGDE
HHHHHEEEEEECCCCCCCCCCCCHHHHCCCCCCCEEEEECCCCCCCCCCEEEEEEEECCE
VGLFGKDKRQKDPHAISAEVTYTPVPLTQQ
EEEECCCCCEECCEEEEEEEEEECCCCCCC
# PDB_Accession:
& Not Available
# Resolution:
Not Available
# Structure_CLASS:
Alpha Beta
# Quaternary_Structure:
Not Available
# Interacting_Partners:
Not Available
# Cofactors:
Not Available
# Metals_Ions:
Not Available
# Kcat_Value_[1/min]:
Not Available
# Specific_Activity_[micromol/min/mg]:
Not Available
# Km_Value_[mM]:
Not Available
# Substrates:
Not Available
# Products:
Not Available
# Specific_Reaction:
Not Available
# General_Reaction:
Not Available
# Inhibitor:
Not Available
# Priority:
7.3
# Status:
Not Available
# Availability:
Not Available
#END_ECARDFILE
#BEGIN_ECARDFILE
# Entry_ID:
CC4200A.1
# Accession_No.:
UA0004200
# Name:
Hypothetical protein ygfK
# Alternate_Names:
Not Available
# General_Function:
alpha-helical ferredoxin; Nucleotide-binding domain
# COG_Function:
Amino acid transport and metabolism (code E)
# COG_ID:
COG0493 NADPH-dependent glutamate synthase beta chain and related oxidoreductases (Evalue = 0.0)
# Specific_Function:
Not Available
# Riley_Gene_Function:
putative selenate reductase, Fe-S subunit; predicted oxidoreductase, Fe-S subunit
# Riley_Cell_Function:
>>>
Not Available
# Gene_Ontology:
>>>
Function: binding
Function: ion binding
Function: cation binding
Function: transition metal ion binding
Function: iron ion binding
||
>>>
Function: metal ion binding
Function: transition metal ion binding
Function: iron ion binding
||
>>>
Function: catalytic activity
Function: oxidoreductase activity
Function: disulfide oxidoreductase activity
||
>>>
Function: catalytic activity
Function: oxidoreductase activity
||
>>>
Process: physiological process
Process: metabolism
Process: cellular metabolism
Process: generation of precursor metabolites and energy
Process: electron transport
||
>>>
Process: cellular physiological process
Process: transport
Process: electron transport
||
>>>
Process: cellular metabolism
Process: generation of precursor metabolites and energy
Process: electron transport
||
>>>
Process: localization
Process: establishment of localization
Process: transport
Process: electron transport
||
>>>
Process: cellular process
Process: cellular physiological process
Process: transport
Process: electron transport
||
>>>
Process: cellular metabolism
Process: generation of precursor metabolites and energy
Process: electron transport
Process: physiological process
Process: metabolism
Process: cellular metabolism
Process: generation of precursor metabolites and energy
Process: electron transport
||
>>>
Process: cellular physiological process
Process: transport
Process: electron transport
||
>>>
Process: cellular metabolism
Process: generation of precursor metabolites and energy
Process: electron transport
||
>>>
Process: localization
Process: establishment of localization
Process: transport
Process: electron transport
||
>>>
Process: cellular process
Process: cellular physiological process
Process: transport
Process: electron transport
||
>>>
Process: cellular metabolism
Process: generation of precursor metabolites and energy
Process: electron transport
Process: physiological process
Process: metabolism
Process: cellular metabolism
Process: generation of precursor metabolites and energy
Process: electron transport
||
>>>
Process: cellular physiological process
Process: transport
Process: electron transport
||
>>>
Process: cellular metabolism
Process: generation of precursor metabolites and energy
Process: electron transport
||
>>>
Process: localization
Process: establishment of localization
Process: transport
Process: electron transport
||
>>>
Process: cellular process
Process: cellular physiological process
Process: transport
Process: electron transport
||
>>>
Process: cellular metabolism
Process: generation of precursor metabolites and energy
Process: electron transport
Process: physiological process
Process: metabolism
Process: cellular metabolism
Process: generation of precursor metabolites and energy
Process: electron transport
||
>>>
Process: cellular physiological process
Process: transport
Process: electron transport
||
>>>
Process: cellular metabolism
Process: generation of precursor metabolites and energy
Process: electron transport
||
>>>
Process: localization
Process: establishment of localization
Process: transport
Process: electron transport
||
>>>
Process: cellular process
Process: cellular physiological process
Process: transport
Process: electron transport
||
>>>
Process: cellular metabolism
Process: generation of precursor metabolites and energy
Process: electron transport
||
>>>
Component: Not Available
# Location:
Not Available
# Blattner_Number:
b2878
# Gene_Sequence:
ATGGGGGATATTATGCGTCCCATTCCGTTTGAGGAACTTTTGACGCGCATATTTGATGAATACCAACAAC
AACGCTCAATCTTTGGTATTCCCGAGCAACAGTTTTACTCACCTGTAAAAGGTAAAACTGTTAGCGTCTT
CGGTGAAACCTGTGCCACTCCCGTCGGCCCTGCCGCTGGCCCGCACACGCAGCTCGCGCAAAATATTGTC
ACTTCCTGGCTGACTGGCGGACGCTTCATCGAACTAAAAACCGTCCAAATTCTTGACCGCCTGGAGCTGG
AAAAGCCCTGTATCGATGCCGAAGACGAGTGCTTTAACACCGAATGGTCTACCGAGTTTACCCTGCTTAA
AGCCTGGGATGAATACCTCAAAGCCTGGTTTGCCCTGCACCTTCTCGAAGCGATGTTCCAGCCTTCTGAT
TCCGGTAAATCGTTCATCTTTAATATGAGCGTCGGTTACAACCTCGAAGGTATTAAGCAACCGCCGATGC
AACAGTTCATCGACAATATGATGGACGCATCTGACCATCCGAAATTCGCTCAATATCGCGATACGCTGAA
TAAATTACTCCAGGATGACGCATTTTTAGCTCGCCACGGATTGCAGGAAAAACGCGAAAGCTTGCAAGCC
TTACCCGCTCGCATCCCCACCAGTATGGTGCATGGCGTCACCCTCTCCACCATGCACGGCTGTCCTCCGC
ATGAAATCGAAGCCATTTGCCGCTACATGCTGGAAGAAAAAGGGCTCAACACCTTTGTGAAACTTAACCC
GACCTTACTGGGGTACGCGCGTGTTCGTGAGATCCTCGATGTCTGCGGTTTCGGTTACATAGGCTTAAAA
GAAGAGTCATTTGATCACGACCTCAAGCTGACGCAAGCACTGGAAATGCTGGAACGCCTGATGGCACTGG
CAAAAGAAAAATCACTCGGCTTTGGCGTAAAACTGACTAACACTCTCGGCACCATCAACAATAAAGGCGC
ACTGCCTGGTGAAGAGATGTATATGTCAGGCCGTGCGCTGTTCCCGCTCTCCATCAATGTTGCAGCAGTT
CTCTCTCGCGCCTTTGACGGCAAACTGCCCATTTCTTATTCCGGTGGTGCCAGTCAGCTGACTATCCGCG
ATATTTTTGATACAGGTATTCGCCCTATTACTATGGCAACCGACCTGCTGAAACCTGGCGGCTATCTGCG
CTTAAGTGCCTGCATGCGCGAGCTGGAAGGCTCCGACGCCTGGGGACTTGACCATGTTGACGTCGAACGA
CTGAACAGACTGGCAGCAGATGCGTTAACCATGGAATACACCCAGAAACACTGGAAGCCAGAAGAGCGTA
TTGAAGTGGCAGAAGACCTGCCGCTGACCGACTGCTACGTTGCCCCCTGTGTTACTGCCTGCGCTATCAA
GCAAGATATTCCGGAATACATCCGTCTGCTTGGCGAACACCGCTATGCCGACGCGCTGGAACTCATCTAC
CAACGCAACGCTCTGCCCGCCATTACCGGTCATATTTGCGATCACCAGTGCCAATACAACTGTACCCGCC
TGGATTACGACAGTGCGCTGAATATCCGCGAACTGAAAAAAGTCGCGCTGGAAAAAGGTTGGGATGAATA
TAAGCAACGCTGGCACAAACCAGCCGGTTCTGGTTCACGCCATCCGGTTGCCGTGATTGGTGCAGGTCCG
GCGGGTCTGGCAGCAGGTTACTTCCTTGCCAGAGCGGGCCATCCGGTTACGCTGTTTGAACGCGAAGCCA
ATGCGGGCGGCGTGGTGAAAAATATCATTCCTCAGTTCCGTATTCCTGCAGAGTTAATTCAGCACGATAT
CGATTTTGTTGCCGCTCACGGCGTGAAATTTGAGTATGGCTGCTCACCCGATTTAACCATTGAGCAGTTA
AAAAATCAGGGCTTCCACTATGTTCTGATTGCCACCGGCACTGATAAAAATAGCGGTGTGAAACTGGCGG
GCGACAACCAAAATGTCTGGAAATCACTCCCCTTCCTGCGTGAATACAACAAGGGTACAGCGCTCAAGCT
GGGCAAACATGTGGTCGTTGTCGGGGCGGGTAACACCGCAATGGACTGCGCTCGTGCGGCGTTACGCGTT
CCAGGCGTAGAAAAAGCAACGATCGTTTACCGTCGTTCACTACAAGAGATGCCCGCATGGCGCGAAGAGT
ATGAAGAAGCGTTGCACGACGGCGTAGAGTTCCGTTTCCTGAATAATCCGGAACGTTTCGATGCTGATGG
CACCTTAACCTTGCGCGTTATGTCGCTTGGCGAACCGGATGAGAAAGGTCGTCGTCGTCCGGTTGAAACC
AATGAAACAGTAACACTGCTTGTAGACAGCCTGATCACCGCCATTGGTGAACAGCAGGATACTGAAGCCC
TGAATGCGATGGGCGTGCCGCTGGACAAAAACGGCTGGCCAGACGTCGACCATAATGGCGAAACTCGTCT
GACTGACGTCTTTATGATCGGCGACGTACAGCGCGGACCATCCTCCATTGTCGCTGCTGTCGGAACCGCG
CGTCGGGCGACCGATGCCATCCTTAGTCGGGAAAATATCCGTTCCCACCAGAACGATAAATACTGGAACA
ACGTCAATCCAGCGGAAATCTATCAACGTAAAGGCGATATCTCTATCACGCTGGTGAACAGTGACGATCG
TGACGCGTTTGTCGCCCAGGAAGCCGCTCGCTGCCTCGAATGTAACTACGTTTGCAGCAAGTGTGTGGAT
GTCTGCCCGAACCGCGCCAACGTCTCCATTGCGGTCCCAGGCTTCCAGAACCGTTTCCAGACGCTGCACC
TCGACGCTTACTGTAACGAATGCGGCAACTGCGCTCAGTTCTGTCCGTGGAACGGTAAACCGTACAAAGA
CAAAATCACCGTCTTCAGCCTGGCGCAAGACTTTGATAACAGCAGCAACCCAGGCTTCCTTGTGGAAGAT
TGCCGGGTACGAGTACGTCTGAATAACCAAAGCTGGGTGTTAAACATCGACAGCAAAGGTCAGTTTAACA
ACGTACCACCGGAGCTGAACGATATGTGCCGCATCATCAGCCATGTCCACCAGCATCATCATTATCTGCT
GGGCCGCGTGGAGGTGTAA
# Upstream_100_bases:
ACCTGGCAAGAGTGGTGCGATTGTTGCTCTATCCCCCTAAACCACCGGATTTCTCAACACCGGTCACTCA
ATGATATCTGTATAAGCTAAGGAGAGGGTT
# Blattner_No_Ontology:
Putative enzymes
# Gene_Position:
3014082-3017180 (Clockwise)
# Centisome_Position:
64.963
# Gene_Name:
ygfK
# GC_Content:
52.21%
# Metabolic_Importance:
Unknown
# Preceding_Gene:
ygfJ
# Following_Gene:
ssnA
# Operon_Status:
Yes
# Operon_Components:
ygfK_ssnA Ref: RegulonDB http://kinich.cifn.unam.mx:8850/db/regulondb_cgi.query_simple?v_organism=ECK12&v_table=3&v_name=ygfK
# Paralogues:
None
# Copy Number:
Not Available
# RNA_Copy_No.:
Not Available
# Genbank_ID_(DNA):
AE000371
# Genbank_ID_(Protein):
AAC75916.1
# SWISS_PROT_(AC_&_ID):
$ YGFK_ECOLI (Q46811)
# 2D_Gel_Image:
Not Available
# Other_Databases:
- ECOCYC: EG13061
- EcoGene: EG13061
- EMBL: U28375
- InterPro: IPR001450; IPR000759; IPR013027; IPR000205; IPR001327; IPR000103
- Pfam: PF00070; PF07992
- PIR: F65071
- PRINTS: PR00419
- PROSITE: PS00198
# Pfam_Domain/Function:
PF00037 4Fe-4S binding domain; PF00070 Pyridine nucleotide-disulphide oxidoreductase;
# Homologues:
Organism=Homo sapiens, GI4503373, Length=1025, Positives=44%, Blast Score=129
Organism=Caenorhabditis elegans, GI17550628, Length=1084, Positives=43%, Blast Score=134
Organism=Caenorhabditis elegans, GI17570289, Length=2207, Positives=43%, Blast Score=106
Organism=Saccharomyces cerevisiae, GI6320030, Length=2145, Positives=49%, Blast Score=118
Organism=Mus musculus, GI25140985, Length=1025, Positives=43%, Blast Score=132
Organism=Drosophila melanogaster, GI18858217, Length=1031, Positives=45%, Blast Score=126
Organism=Drosophila melanogaster, GI24640763, Length=1031, Positives=45%, Blast Score=126
Organism=Drosophila melanogaster, GI24665543, Length=915, Positives=45%, Blast Score=124
Organism=Drosophila melanogaster, GI24665547, Length=915, Positives=45%, Blast Score=124
Organism=Drosophila melanogaster, GI28574881, Length=2114, Positives=45%, Blast Score=124
Organism=Drosophila melanogaster, GI24665539, Length=2114, Positives=45%, Blast Score=124
# Similarity:
Not Available
# EC_Number:
Not Available
# No._of_Amino_Acids:
1032 (Translated Protein)
1031 (Mature Protein)
# Molecular_Weight:
115583 115452
# Theoretical_pI:
5.75
# Theoretical_pI (Mature):
5.75
# Sequence:
// MGDIMRPIPFEELLTRIFDEYQQQRSIFGIPEQQFYSPVKGKTVSVFGETCATPVGPAAG
// PHTQLAQNIVTSWLTGGRFIELKTVQILDRLELEKPCIDAEDECFNTEWSTEFTLLKAWD
// EYLKAWFALHLLEAMFQPSDSGKSFIFNMSVGYNLEGIKQPPMQQFIDNMMDASDHPKFA
// QYRDTLNKLLQDDAFLARHGLQEKRESLQALPARIPTSMVHGVTLSTMHGCPPHEIEAIC
// RYMLEEKGLNTFVKLNPTLLGYARVREILDVCGFGYIGLKEESFDHDLKLTQALEMLERL
// MALAKEKSLGFGVKLTNTLGTINNKGALPGEEMYMSGRALFPLSINVAAVLSRAFDGKLP
// ISYSGGASQLTIRDIFDTGIRPITMATDLLKPGGYLRLSACMRELEGSDAWGLDHVDVER
// LNRLAADALTMEYTQKHWKPEERIEVAEDLPLTDCYVAPCVTACAIKQDIPEYIRLLGEH
// RYADALELIYQRNALPAITGHICDHQCQYNCTRLDYDSALNIRELKKVALEKGWDEYKQR
// WHKPAGSGSRHPVAVIGAGPAGLAAGYFLARAGHPVTLFEREANAGGVVKNIIPQFRIPA
// ELIQHDIDFVAAHGVKFEYGCSPDLTIEQLKNQGFHYVLIATGTDKNSGVKLAGDNQNVW
// KSLPFLREYNKGTALKLGKHVVVVGAGNTAMDCARAALRVPGVEKATIVYRRSLQEMPAW
// REEYEEALHDGVEFRFLNNPERFDADGTLTLRVMSLGEPDEKGRRRPVETNETVTLLVDS
// LITAIGEQQDTEALNAMGVPLDKNGWPDVDHNGETRLTDVFMIGDVQRGPSSIVAAVGTA
// RRATDAILSRENIRSHQNDKYWNNVNPAEIYQRKGDISITLVNSDDRDAFVAQEAARCLE
// CNYVCSKCVDVCPNRANVSIAVPGFQNRFQTLHLDAYCNECGNCAQFCPWNGKPYKDKIT
// VFSLAQDFDNSSNPGFLVEDCRVRVRLNNQSWVLNIDSKGQFNNVPPELNDMCRIISHVH
// QHHHYLLGRVEV
// /\
// GDIMRPIPFEELLTRIFDEYQQQRSIFGIPEQQFYSPVKGKTVSVFGETCATPVGPAAGP
// HTQLAQNIVTSWLTGGRFIELKTVQILDRLELEKPCIDAEDECFNTEWSTEFTLLKAWDE
// YLKAWFALHLLEAMFQPSDSGKSFIFNMSVGYNLEGIKQPPMQQFIDNMMDASDHPKFAQ
// YRDTLNKLLQDDAFLARHGLQEKRESLQALPARIPTSMVHGVTLSTMHGCPPHEIEAICR
// YMLEEKGLNTFVKLNPTLLGYARVREILDVCGFGYIGLKEESFDHDLKLTQALEMLERLM
// ALAKEKSLGFGVKLTNTLGTINNKGALPGEEMYMSGRALFPLSINVAAVLSRAFDGKLPI
// SYSGGASQLTIRDIFDTGIRPITMATDLLKPGGYLRLSACMRELEGSDAWGLDHVDVERL
// NRLAADALTMEYTQKHWKPEERIEVAEDLPLTDCYVAPCVTACAIKQDIPEYIRLLGEHR
// YADALELIYQRNALPAITGHICDHQCQYNCTRLDYDSALNIRELKKVALEKGWDEYKQRW
// HKPAGSGSRHPVAVIGAGPAGLAAGYFLARAGHPVTLFEREANAGGVVKNIIPQFRIPAE
// LIQHDIDFVAAHGVKFEYGCSPDLTIEQLKNQGFHYVLIATGTDKNSGVKLAGDNQNVWK
// SLPFLREYNKGTALKLGKHVVVVGAGNTAMDCARAALRVPGVEKATIVYRRSLQEMPAWR
// EEYEEALHDGVEFRFLNNPERFDADGTLTLRVMSLGEPDEKGRRRPVETNETVTLLVDSL
// ITAIGEQQDTEALNAMGVPLDKNGWPDVDHNGETRLTDVFMIGDVQRGPSSIVAAVGTAR
// RATDAILSRENIRSHQNDKYWNNVNPAEIYQRKGDISITLVNSDDRDAFVAQEAARCLEC
// NYVCSKCVDVCPNRANVSIAVPGFQNRFQTLHLDAYCNECGNCAQFCPWNGKPYKDKITV
// FSLAQDFDNSSNPGFLVEDCRVRVRLNNQSWVLNIDSKGQFNNVPPELNDMCRIISHVHQ
// HHHYLLGRVEV
# PROSITE_Motif:
4FE4S_FERREDOXIN; PATTERN. PS00198; 4Fe-4S ferredoxins, iron-sulfur binding region signature. C-x(2)-C-x(2)-C-x(3)-C-[PEG]. PDOC00176; //
# Important_Sites:
Metal 938 938 iron-sulfur (4Fe-4S) (Potentially)
Metal 941 941 iron-sulfur (4Fe-4S) (Potentially)
Metal 944 944 iron-sulfur (4Fe-4S) (Potentially)
Metal 948 948 iron-sulfur (4Fe-4S) (Potentially)
# Transmembrane:
Not Available
# Cys/Met_Content:
2.5 %Cys (Translated Protein)
2.2 %Met (Translated Protein)
4.7 %Cys+Met (Translated Protein)
2.5 %Cys (Mature Protein)
2.1 %Met (Mature Protein)
4.7 %Cys+Met (Mature Protein)
# Secondary_Structure_(PDB):
>YGFK_ECOLI (Translated Protein)
MGDIMRPIPFEELLTRIFDEYQQQRSIFGIPEQQFYSPVKGKTVSVFGETCATPVGPAAG
CCCCCCCCCHHHHHHHHHHHHHHHHHCCCCCHHHHCCCCCCCEEEEECCCCCCCCCCCCC
PHTQLAQNIVTSWLTGGRFIELKTVQILDRLELEKPCIDAEDECFNTEWSTEFTLLKAWD
CHHHHHHHHHHHHHCCCEEEEEHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCHHHHHHHH
EYLKAWFALHLLEAMFQPSDSGKSFIFNMSVGYNLEGIKQPPMQQFIDNMMDASDHPKFA
HHHHHHHHHHHHHHHHCCCCCCCCEEEEEECCCCCCCCCCCCHHHHHHHHCCCCCCCCHH
QYRDTLNKLLQDDAFLARHGLQEKRESLQALPARIPTSMVHGVTLSTMHGCPPHEIEAIC
HHHHHHHHHHHCCHHHHHHCCHHHHHHHHHHHHHCCHHHHCCEEEECCCCCCHHHHHHHH
RYMLEEKGLNTFVKLNPTLLGYARVREILDVCGFGYIGLKEESFDHDLKLTQALEMLERL
HHHHHHCCCCEEEEECCHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCHHHHHHHHHHHHH
MALAKEKSLGFGVKLTNTLGTINNKGALPGEEMYMSGRALFPLSINVAAVLSRAFDGKLP
HHHHHCCCCCCCCEEEEEECCCCCCCCCCHHHHHCCCCEEEEECHHHHHHHHHHCCCCCC
ISYSGGASQLTIRDIFDTGIRPITMATDLLKPGGYLRLSACMRELEGSDAWGLDHVDVER
EEECCCCCEEEEHHHHHCCCCEEEHHHHHHCCCCEEEHHHHHHHHCCCCCCCCCHHHHHH
LNRLAADALTMEYTQKHWKPEERIEVAEDLPLTDCYVAPCVTACAIKQDIPEYIRLLGEH
HHHHHHHHHHHHHHHHHCCHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHCC
RYADALELIYQRNALPAITGHICDHQCQYNCTRLDYDSALNIRELKKVALEKGWDEYKQR
CHHHHHHHHHHCCCCHHHHHHCCCCCCCCCCEECCCCCCCCHHHHHHHHHHCCHHHHHHH
WHKPAGSGSRHPVAVIGAGPAGLAAGYFLARAGHPVTLFEREANAGGVVKNIIPQFRIPA
HCCCCCCCCCCCEEEECCCCHHHHHHHHHHCCCCCEEEEEECCCCCCHHHHCCHHCCCCH
ELIQHDIDFVAAHGVKFEYGCSPDLTIEQLKNQGFHYVLIATGTDKNSGVKLAGDNQNVW
HHHHCCHHHHHHCCCEEEECCCCCCCHHHHHCCCCEEEEEEECCCCCCCEEEECCCCHHH
KSLPFLREYNKGTALKLGKHVVVVGAGNTAMDCARAALRVPGVEKATIVYRRSLQEMPAW
HHCHHHHHCCCCCCEECCCEEEEEECCCHHHHHHHHHHCCCCCCHHHHHHHHHHHHCCHH
REEYEEALHDGVEFRFLNNPERFDADGTLTLRVMSLGEPDEKGRRRPVETNETVTLLVDS
HHHHHHHHHCCCEEEECCCCHHCCCCCEEEEEEEECCCCCCCCCCCCCCCCCCHHHHHHH
LITAIGEQQDTEALNAMGVPLDKNGWPDVDHNGETRLTDVFMIGDVQRGPSSIVAAVGTA
HHHHHCCCHHHHHHHHCCCCCCCCCCCCCCCCCCCEEEEEEEEECCCCCCHHHHHHHCCH
RRATDAILSRENIRSHQNDKYWNNVNPAEIYQRKGDISITLVNSDDRDAFVAQEAARCLE
HHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHCCCCEEEEEECCCCCHHHHHHHHHHHHH
CNYVCSKCVDVCPNRANVSIAVPGFQNRFQTLHLDAYCNECGNCAQFCPWNGKPYKDKIT
HHHHHHHHHHHCCCCCCEEEECCCCCCCCCEEEEHHHHHHCCCHHHCCCCCCCCCCCEEE
VFSLAQDFDNSSNPGFLVEDCRVRVRLNNQSWVLNIDSKGQFNNVPPELNDMCRIISHVH
EEEEHHHHCCCCCCCEEEECCEEEEEECCCEEEEEECCCCCCCCCCCCHHHHHHHHHHHH
QHHHYLLGRVEV
HHHHHHHEEECC
/\
>YGFK_ECOLI (Mature Protein)
GDIMRPIPFEELLTRIFDEYQQQRSIFGIPEQQFYSPVKGKTVSVFGETCATPVGPAAGP
CCCCCCCCHHHHHHHHHHHHHHHHHCCCCCHHHHCCCCCCCEEEEECCCCCCCCCCCCCC
HTQLAQNIVTSWLTGGRFIELKTVQILDRLELEKPCIDAEDECFNTEWSTEFTLLKAWDE
HHHHHHHHHHHHHCCCEEEEEHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCHHHHHHHHH
YLKAWFALHLLEAMFQPSDSGKSFIFNMSVGYNLEGIKQPPMQQFIDNMMDASDHPKFAQ
HHHHHHHHHHHHHHHCCCCCCCCEEEEEECCCCCCCCCCCCHHHHHHHHCCCCCCCCHHH
YRDTLNKLLQDDAFLARHGLQEKRESLQALPARIPTSMVHGVTLSTMHGCPPHEIEAICR
HHHHHHHHHHCCHHHHHHCCHHHHHHHHHHHHHCCHHHHCCEEEECCCCCCHHHHHHHHH
YMLEEKGLNTFVKLNPTLLGYARVREILDVCGFGYIGLKEESFDHDLKLTQALEMLERLM
HHHHHCCCCEEEEECCHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCHHHHHHHHHHHHHH
ALAKEKSLGFGVKLTNTLGTINNKGALPGEEMYMSGRALFPLSINVAAVLSRAFDGKLPI
HHHHCCCCCCCCEEEEEECCCCCCCCCCHHHHHCCCCEEEEECHHHHHHHHHHCCCCCCE
SYSGGASQLTIRDIFDTGIRPITMATDLLKPGGYLRLSACMRELEGSDAWGLDHVDVERL
EECCCCCEEEEHHHHHCCCCEEEHHHHHHCCCCEEEHHHHHHHHCCCCCCCCCHHHHHHH
NRLAADALTMEYTQKHWKPEERIEVAEDLPLTDCYVAPCVTACAIKQDIPEYIRLLGEHR
HHHHHHHHHHHHHHHHCCHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCC
YADALELIYQRNALPAITGHICDHQCQYNCTRLDYDSALNIRELKKVALEKGWDEYKQRW
HHHHHHHHHHCCCCHHHHHHCCCCCCCCCCEECCCCCCCCHHHHHHHHHHCCHHHHHHHH
HKPAGSGSRHPVAVIGAGPAGLAAGYFLARAGHPVTLFEREANAGGVVKNIIPQFRIPAE
CCCCCCCCCCCEEEECCCCHHHHHHHHHHCCCCCEEEEEECCCCCCHHHHCCHHCCCCHH
LIQHDIDFVAAHGVKFEYGCSPDLTIEQLKNQGFHYVLIATGTDKNSGVKLAGDNQNVWK
HHHCCHHHHHHCCCEEEECCCCCCCHHHHHCCCCEEEEEEECCCCCCCEEEECCCCHHHH
SLPFLREYNKGTALKLGKHVVVVGAGNTAMDCARAALRVPGVEKATIVYRRSLQEMPAWR
HCHHHHHCCCCCCEECCCEEEEEECCCHHHHHHHHHHCCCCCCHHHHHHHHHHHHCCHHH
EEYEEALHDGVEFRFLNNPERFDADGTLTLRVMSLGEPDEKGRRRPVETNETVTLLVDSL
HHHHHHHHCCCEEEECCCCHHCCCCCEEEEEEEECCCCCCCCCCCCCCCCCCHHHHHHHH
ITAIGEQQDTEALNAMGVPLDKNGWPDVDHNGETRLTDVFMIGDVQRGPSSIVAAVGTAR
HHHHCCCHHHHHHHHCCCCCCCCCCCCCCCCCCCEEEEEEEEECCCCCCHHHHHHHCCHH
RATDAILSRENIRSHQNDKYWNNVNPAEIYQRKGDISITLVNSDDRDAFVAQEAARCLEC
HHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHCCCCEEEEEECCCCCHHHHHHHHHHHHHH
NYVCSKCVDVCPNRANVSIAVPGFQNRFQTLHLDAYCNECGNCAQFCPWNGKPYKDKITV
HHHHHHHHHHCCCCCCEEEECCCCCCCCCEEEEHHHHHHCCCHHHCCCCCCCCCCCEEEE
FSLAQDFDNSSNPGFLVEDCRVRVRLNNQSWVLNIDSKGQFNNVPPELNDMCRIISHVHQ
EEEHHHHCCCCCCCEEEECCEEEEEECCCEEEEEECCCCCCCCCCCCHHHHHHHHHHHHH
HHHYLLGRVEV
HHHHHHEEECC
# PDB_Accession:
& Not Available
# Resolution:
Not Available
# Structure_CLASS:
Unstructured
# Quaternary_Structure:
heteromultimer; putative selenate reductase
# Interacting_Partners:
Not Available
# Cofactors:
Not Available
# Metals_Ions:
--Iron (Potential)
# Kcat_Value_[1/min]:
Not Available
# Specific_Activity_[micromol/min/mg]:
Not Available
# Km_Value_[mM]:
Not Available
# Substrates:
Not Available
# Products:
Not Available
# Specific_Reaction:
Not Available
# General_Reaction:
Not Available
# Inhibitor:
Not Available
# Priority:
7.7
# Status:
Selected, Cloned, Expressed, Soluble
# Availability:
Marseilles Structural Genomics Program
#END_ECARDFILE
#BEGIN_ECARDFILE
# Entry_ID:
CC1525A.1
# Accession_No.:
UA0001525
# Name:
Peptidase T
# Alternate_Names:
Tripeptide aminopeptidase; Aminotripeptidase; Tripeptidase
# General_Function:
Translation; Member of M20B family; peptidase T; Zn-dependent exopeptidases
# COG_Function:
Amino acid transport and metabolism (code E)
# COG_ID:
COG2195 Di- and tripeptidases (Evalue = 0.0)
# Specific_Function:
Releases the N-terminal amino acid from tripeptides. Has a preference for tripeptides containing a N-terminal methionine or leucine (By similarity).
# Riley_Gene_Function:
putative peptidase T(aminotripeptidase), Zn-dependent
# Riley_Cell_Function:
>>>
Metabolism
Macromolecule degradation
Proteins/peptides/glycopeptides
# Gene_Ontology:
>>>
Function: catalytic activity
Function: hydrolase activity
Function: peptidase activity
Function: metallopeptidase activity
||
>>>
Function: catalytic activity
Function: hydrolase activity
||
>>>
Function: catalytic activity
Function: hydrolase activity
Function: peptidase activity
Function: metallopeptidase activity
||
>>>
Function: binding
Function: ion binding
Function: cation binding
Function: transition metal ion binding
Function: zinc ion binding
||
>>>
Function: metal ion binding
Function: transition metal ion binding
Function: zinc ion binding
||
>>>
Process: physiological process
Process: metabolism
Process: macromolecule metabolism
Process: protein metabolism
Process: cellular protein metabolism
Process: proteolysis
||
>>>
Process: cellular macromolecule metabolism
Process: cellular protein metabolism
Process: proteolysis
||
>>>
Process: cellular metabolism
Process: cellular macromolecule metabolism
Process: cellular protein metabolism
Process: proteolysis
||
>>>
Process: primary metabolism
Process: protein metabolism
Process: cellular protein metabolism
Process: proteolysis
||
>>>
Process: cellular physiological process
Process: cellular metabolism
Process: cellular macromolecule metabolism
Process: cellular protein metabolism
Process: proteolysis
||
>>>
Process: cellular process
Process: cellular physiological process
Process: cellular metabolism
Process: cellular macromolecule metabolism
Process: cellular protein metabolism
Process: proteolysis
Process: physiological process
Process: metabolism
Process: macromolecule metabolism
Process: protein metabolism
Process: cellular protein metabolism
Process: proteolysis
||
>>>
Process: cellular macromolecule metabolism
Process: cellular protein metabolism
Process: proteolysis
||
>>>
Process: cellular metabolism
Process: cellular macromolecule metabolism
Process: cellular protein metabolism
Process: proteolysis
||
>>>
Process: primary metabolism
Process: protein metabolism
Process: cellular protein metabolism
Process: proteolysis
||
>>>
Process: cellular physiological process
Process: cellular metabolism
Process: cellular macromolecule metabolism
Process: cellular protein metabolism
Process: proteolysis
||
>>>
Process: cellular process
Process: cellular physiological process
Process: cellular metabolism
Process: cellular macromolecule metabolism
Process: cellular protein metabolism
Process: proteolysis
Process: physiological process
Process: metabolism
Process: cellular metabolism
Process: peptide metabolism
||
>>>
Process: cellular physiological process
Process: cellular metabolism
Process: peptide metabolism
||
>>>
Process: cellular process
Process: cellular physiological process
Process: cellular metabolism
Process: peptide metabolism
||
>>>
Component: cell
Component: intracellular
Component: cytoplasm
# Location:
Cytoplasm
# Blattner_Number:
b1127
# Gene_Sequence:
ATGGATAAACTACTTGAGCGATTTTTGAACTACGTGTCTCTGGATACCCAATCAAAAGCAGGGGTGAGAC
AGGTTCCCAGCACGGAAGGCCAATGGAAGTTATTGCATCTGCTGAAAGAGCAGCTCGAAGAGATGGGGCT
TATCAATGTGACCTTAAGTGAGAAGGGCACTTTGATGGCGACGTTACCGGCTAACGTCCCTGGCGATATC
CCGGCGATTGGCTTTATTTCTCATGTGGATACCTCACCGGATTGCAGCGGCAAAAATGTGAATCCGCAAA
TTGTTGAAAACTATCGCGGTGGCGATATTGCGCTGGGTATCGGCGATGAAGTTTTATCACCGGTTATGTT
CCCGGTGCTGCATCAGCTACTGGGTCAGACGCTGATTACCACCGATGGTAAAACCTTGTTAGGTGCCGAT
GACAAAGCAGGTATTGCAGAAATCATGACCGCGCTGGCGGTATTGCAACAGAAAAAAATTCCGCATGGTG
ATATTCGCGTCGCCTTTACCCCGGATGAAGAAGTGGGCAAAGGGGCGAAACATTTTGATGTTGACGCCTT
CGATGCCCGCTGGGCTTACACTGTTGATGGTGGTGGCGTAGGCGAACTGGAGTTTGAAAACTTCAACGCC
GCGTCGGTCAATATCAAAATTGTCGGTAACAATGTTCATCCGGGCACGGCGAAAGGAGTGATGGTAAATG
CGCTGTCGCTGGCGGCACGTATTCATGCGGAAGTTCCGGCGGATGAAAGCCCGGAAATGACAGAAGGCTA
TGAAGGTTTCTATCATCTGGCGAGCATGAAAGGCACCGTTGAACGGGCCGATATGCACTACATCATCCGT
GATTTCGACCGTAAACAGTTTGAAGCGCGTAAACGTAAAATGATGGAGATCGCCAAAAAAGTGGGCAAAG
GGTTACATCCTGATTGCTACATTGAACTGGTGATTGAAGACAGTTACTACAATATGCGCGAGAAAGTGGT
TGAGCATCCGCATATTCTCGATATCGCCCAGCAGGCGATGCGCGATTGCGATATTGAACCGGAACTGAAA
CCGATCCGCGGTGGTACCGACGGCGCGCAGTTGTCGTTTATGGGATTACCGTGCCCGAACCTGTTCACTG
GCGGTTACAACTATCATGGTAAGCATGAGTTTGTGACTCTGGAAGGTATGGAAAAAGCGGTGCAGGTGAT
CGTCCGTATTGCCGAGTTAACGGCGCAACGGAAGTAA
# Upstream_100_bases:
CTGATAAATATTCCCGCTTGCAGGGGTAAAAGTGACCTGACGCAATATTTGTCTTTTCTTGCTTCTTAAT
AATGTTGTCACAAAAAGTGAGGGTGACTAC
# Blattner_No_Ontology:
Translation, post-translational modification
# Gene_Position:
1185067-1186293 (Clockwise)
# Centisome_Position:
25.542
# Gene_Name:
pepT
# GC_Content:
49.88%
# Metabolic_Importance:
Non_Essential
# Preceding_Gene:
potA
# Following_Gene:
ycfD
# Operon_Status:
No
# Operon_Components:
None
# Paralogues:
None
# Copy Number:
Unknown
# RNA_Copy_No.:
Log phase (2max): 0.08
Stationary phase (2max): 0.2
Ref: Nature Biotech., 18, 1262-68, Dec. 2000 (PMID=11101804)
# Genbank_ID_(DNA):
G1787372
# Genbank_ID_(Protein):
AAC74211.1
# SWISS_PROT_(AC_&_ID):
$ PEPT_ECOLI (P29745)
# 2D_Gel_Image:
Not Available
# Other_Databases:
- ECOCYC: EG11549
- EcoGene: EG11549
- EMBL: U00096
- InterPro: IPR001261; IPR011650; IPR002933; IPR010161
- Pfam: PF07687; PF01546
- PIR: D64857
- PROSITE: PS00758
# Pfam_Domain/Function:
PF01546 Peptidase family M20/M25/M40
# Homologues:
Not Available
# Similarity:
Belongs to the peptidase M20A family.
# EC_Number:
3.4.11.4
# No._of_Amino_Acids:
408 (Translated Protein)
408 (Mature Protein)
# Molecular_Weight:
44924 44924
# Theoretical_pI:
5.31
# Theoretical_pI (Mature):
5.31
# Sequence:
// MDKLLERFLNYVSLDTQSKAGVRQVPSTEGQWKLLHLLKEQLEEMGLINVTLSEKGTLMA
// TLPANVPGDIPAIGFISHVDTSPDCSGKNVNPQIVENYRGGDIALGIGDEVLSPVMFPVL
// HQLLGQTLITTDGKTLLGADDKAGIAEIMTALAVLQQKKIPHGDIRVAFTPDEEVGKGAK
// HFDVDAFDARWAYTVDGGGVGELEFENFNAASVNIKIVGNNVHPGTAKGVMVNALSLAAR
// IHAEVPADESPEMTEGYEGFYHLASMKGTVERADMHYIIRDFDRKQFEARKRKMMEIAKK
// VGKGLHPDCYIELVIEDSYYNMREKVVEHPHILDIAQQAMRDCDIEPELKPIRGGTDGAQ
// LSFMGLPCPNLFTGGYNYHGKHEFVTLEGMEKAVQVIVRIAELTAQRK
// /\
// MDKLLERFLNYVSLDTQSKAGVRQVPSTEGQWKLLHLLKEQLEEMGLINVTLSEKGTLMA
// TLPANVPGDIPAIGFISHVDTSPDCSGKNVNPQIVENYRGGDIALGIGDEVLSPVMFPVL
// HQLLGQTLITTDGKTLLGADDKAGIAEIMTALAVLQQKKIPHGDIRVAFTPDEEVGKGAK
// HFDVDAFDARWAYTVDGGGVGELEFENFNAASVNIKIVGNNVHPGTAKGVMVNALSLAAR
// IHAEVPADESPEMTEGYEGFYHLASMKGTVERADMHYIIRDFDRKQFEARKRKMMEIAKK
// VGKGLHPDCYIELVIEDSYYNMREKVVEHPHILDIAQQAMRDCDIEPELKPIRGGTDGAQ
// LSFMGLPCPNLFTGGYNYHGKHEFVTLEGMEKAVQVIVRIAELTAQRK
# PROSITE_Motif:
ARGE_DAPE_CPG2_1; PATTERN. PS00758; ArgE / dapE / ACY1 / CPG2 / yscS family signature 1. [LIV]-[GALMY]-[LIVMF]-x-[GSA]-H-x-D-[TV]-[STAV]. PDOC00613; //
ARGE_DAPE_CPG2_2; PATTERN. PS00759; ArgE / dapE / ACY1 / CPG2 / yscS family signature 2. [GSTAI]-[SANQ]-D-x-K-[GSACN]-x(2)-[LIVMA]-x(2)-[LIVMFY]-x(14,17)-[LIVM]- PA x-[LIVMF]-[LIVMSTAG]-[LIVMFA]-x(2)-[DNG]-E-E-x-[GSTN]. PDOC00613; //
# Important_Sites:
Not Available
# Transmembrane:
Not Available
# Cys/Met_Content:
1.0 %Cys (Translated Protein)
3.7 %Met (Translated Protein)
4.7 %Cys+Met (Translated Protein)
1.0 %Cys (Mature Protein)
3.7 %Met (Mature Protein)
4.7 %Cys+Met (Mature Protein)
# Secondary_Structure_(PDB):
DKLLERFLHYVSLDTQSKSGVRQVPSTEGQWKLLRLLKQQLEEGLVNITLS
CCHHHHHHHHHHCCCEEECCCCCCCCCHHHHHHHHHHHHHHHCCCCCCCCC
EKGTLATLPANVEGDIPAIGFISHVDTSPDFSGKNVNPQIVENYRGGDIAL
CCCEEEEEEECCCCCCEEEEEEEEEEECCCCCCCCCEEEEEECCCCCEEEE
GIGDEVLSPVFPVLHQLLGQTLITTDGKTLLGADDKAGVAEITALAVLKGN
CCCEEEEECCCCHHHHCCCEEEEEECCCCCCCCCCHHHHHHCCHHHHHHHC
PIPHGDIKVAFTPDEEVGKGAKHFDVEAFGAQWAYTVDGGGVGELEFENFN
CCEEEEEEEEEEECCCCCCCCCCCHHHHHCCCEEEEEEEECCCEEEEEEEE
AASVNIKIVGNNVHPGTAKGVVNALSLAARIHAEVPADEAPETTEGYEGFY
EEEEEEEEEEEECCCCCCCCCCCHHHHHHHHHHCCCCCCCCCCCCCCCEEE
HLASKGTVDRAEHYIIRDFDRKQFEARKRKEIAKKVGKGLHPDCYIELVIE
EEEEECCEEEEEEEEEEECCHHHHHHHHHCCHHHHHHHCCCCCEEEEEEEE
DSYYNREKVVEHPHILDIAQQARDCHITPEKPIRGGTDGAQLSFGLPCPNL
EEECCCHHHHHCHHHHHHHHHCCCCCCCCCCEEECCCHHHHHHCCEEEEEE
FTGGYNYHGKHEFVTLEGEKAVQVIVRIAELTAKRG
EECCCCCCCCCEEEECCCCHHHHHHHHHHHHHHHHC
# PDB_Accession:
& 1fno
# Resolution:
2.40
# Structure_CLASS:
Alpha Beta
# Quaternary_Structure:
monomeric multimer; peptidase T
# Interacting_Partners:
Unknown
# Cofactors:
Binds 2 zinc ions per subunit (By similarity).
# Metals_Ions:
--Zinc(By similarity)
# Kcat_Value_[1/min]:
Not Available
# Specific_Activity_[micromol/min/mg]:
Not Available
# Km_Value_[mM]:
Not Available
# Substrates:
Not Available
# Products:
Not Available
# Specific_Reaction:
Not Available
# General_Reaction:
Hydrolase; Acting on peptide bonds (Peptidases); Aminopeptidases
# Inhibitor:
--1,10-phenanthroline --Ca2+ --Co2+ --Cu2+ --Hg2+ --Mg2+ --Zn2+
# Priority:
0.0
# Status:
Completed
# Availability:
Completed
#END_ECARDFILE
#BEGIN_ECARDFILE
# Entry_ID:
CC3322A.1
# Accession_No.:
UA0003322
# Name:
Cell division activator cedA
# Alternate_Names:
Not Available
# General_Function:
Unknown
# COG_Function:
Not Available
# COG_ID:
Not Available
# Specific_Function:
Not Available
# Riley_Gene_Function:
cell division activator
# Riley_Cell_Function:
>>>
Regulation
Type of regulation
Regulation level unknown
||
>>>
Cell processes
Cell division
# Gene_Ontology:
>>>
Function: Not Available
||
>>>
Process: Not Available
||
>>>
Component: Not Available
# Location:
Cytoplasm
# Blattner_Number:
b1731
# Gene_Sequence:
ATGCGTTTAGTGAAGCCAGTAATGAAGAAACCGCTCCGCCAGCAAAACCGCCAGATTATTAGCTATGTCC
CACGCACGGAACCCGCGCCGCCAGAACATGCGATAAAGATGGATTCGTTTCGTGATGTCTGGATGCTGCG
TGGCAAATATGTTGCGTTTGTACTGATGGGAGAGTCATTTCTGCGCTCACCGGCGTTTACTGTGCCTGAA
TCTGCCCAACGTTGGGCAAATCAGATCCGCCAGGAAGGGGAAGTGACTGAGTAA
# Upstream_100_bases:
CCGCTTCGGAGACTATTCTGGAAACGGTGTTATGAAATACACGCAAAGCGGGACGTACAGGGGCTAAATC
GGCTAAACTACAGTTTTTCTGATTTTTAAT
# Blattner_No_Ontology:
Hypothetical, unclassified, unknown
# Gene_Position:
1811445-1811708 (Counter Clockwise)
# Centisome_Position:
39.048
# Gene_Name:
cedA
# GC_Content:
51.52%
# Metabolic_Importance:
Unknown
# Preceding_Gene:
ydjO
# Following_Gene:
katE
# Operon_Status:
No
# Operon_Components:
None
# Paralogues:
None
# Copy Number:
Unknown
# RNA_Copy_No.:
Log phase (2max): 0.12
Stationary phase (2max): 0.29
Ref: Nature Biotech., 18, 1262-68, Dec. 2000 (PMID=11101804)
# Genbank_ID_(DNA):
G1788026
# Genbank_ID_(Protein):
AAC74801.1
# SWISS_PROT_(AC_&_ID):
$ CEDA_ECOLI (P0AE60)
# 2D_Gel_Image:
Not Available
# Other_Databases:
- ECOCYC: EG13992
- EcoGene: EG13992
- EMBL: U00096
- PIR: C64932
# Pfam_Domain/Function:
None
# Homologues:
Not Available
# Similarity:
Not Available
# EC_Number:
Not Available
# No._of_Amino_Acids:
87 (Translated Protein)
87 (Mature Protein)
# Molecular_Weight:
10201 10201
# Theoretical_pI:
10.71
# Theoretical_pI (Mature):
10.71
# Sequence:
// MRLVKPVMKKPLRQQNRQIISYVPRTEPAPPEHAIKMDSFRDVWMLRGKYVAFVLMGESF
// LRSPAFTVPESAQRWANQIRQEGEVTE
// /\
// MRLVKPVMKKPLRQQNRQIISYVPRTEPAPPEHAIKMDSFRDVWMLRGKYVAFVLMGESF
// LRSPAFTVPESAQRWANQIRQEGEVTE
# PROSITE_Motif:
Not Available
# Important_Sites:
Not Available
# Transmembrane:
Not Available
# Cys/Met_Content:
0.0 %Cys (Translated Protein)
5.7 %Met (Translated Protein)
5.7 %Cys+Met (Translated Protein)
0.0 %Cys (Mature Protein)
5.7 %Met (Mature Protein)
5.7 %Cys+Met (Mature Protein)
# Secondary_Structure:
>CEDA_ECOLI (Translated Protein)
MRLVKPVMKKPLRQQNRQIISYVPRTEPAPPEHAIKMDSFRDVWMLRGKYVAFVLMGESF
CCCCCHHHHCHHHHHCCHHHEECCCCCCCCCCCEEECCCCCCEEEECCCEEEEEECCHHH
LRSPAFTVPESAQRWANQIRQEGEVTE
HCCCCCCCCHHHHHHHHHHHHCCCCCC
/\
>CEDA_ECOLI (Mature Protein)
RLVKPVMKKPLRQQNRQIISYVPRTEPAPPEHAIKMDSFRDVWMLRGKYVAFVLMGESFL
CCCCHHHHCHHHHHCCHHHEECCCCCCCCCCCEEECCCCCCEEEECCCEEEEEECCHHHH
RSPAFTVPESAQRWANQIRQEGEVTE
CCCCCCCCHHHHHHHHHHHHCCCCCC
# PDB_Accession:
& Not Available
# Resolution:
Not Available
# Structure_CLASS:
Alpha Beta
# Quaternary_Structure:
Not Available
# Interacting_Partners:
Not Available
# Cofactors:
Not Available
# Metals_Ions:
Not Available
# Kcat_Value_[1/min]:
Not Available
# Specific_Activity_[micromol/min/mg]:
Not Available
# Km_Value_[mM]:
Not Available
# Substrates:
Not Available
# Products:
Not Available
# Specific_Reaction:
Not Available
# General_Reaction:
Not Available
# Inhibitor:
Not Available
# Priority:
7.6
# Status:
Selected, Cloned, Expressed, Soluble, Purified
# Availability:
Montreal-Kingston Bacterial Structural Genomics Initiative
#END_ECARDFILE
#BEGIN_ECARDFILE
# Entry_ID:
CC3908A.1
# Accession_No.:
UA0003908
# Name:
Protein ygbM
# Alternate_Names:
Not Available
# General_Function:
Xylose isomerase-like
# COG_Function:
Carbohydrate transport and metabolism (code G)
# COG_ID:
COG3622 Hydroxypyruvate isomerase (Evalue = 1e-152)
# Specific_Function:
Not Available
# Riley_Gene_Function:
putative epimerase/isomerase
# Riley_Cell_Function:
>>>
Not Available
# Gene_Ontology:
>>>
Function: Not Available
||
>>>
Process: Not Available
||
>>>
Component: Not Available
# Location:
Cytoplasm
# Blattner_Number:
b2739
# Gene_Sequence:
ATGCCTCGTTTTGCAGCTAATTTATCCATGATGTTCACCGAAGTGCCTTTTATTGAACGCTTCGCCGCAG
CGCGAAAAGCCGGGTTCGATGCTGTGGAATTTCTGTTTCCCTATAACTACTCCACCCTGCAAATCCAAAA
GCAACTGGAGCAAAACCATCTGACACTGGCGCTGTTCAATACCGCTCCCGGAGATATTAATGCGGGGGAA
TGGGGATTATCCGCCCTTCCCGGACGTGAGCACGAAGCACACGCAGACATCGACCTGGCACTGGAATATG
CATTGGCGCTCAATTGTGAACAAGTCCATGTGATGGCAGGCGTCGTGCCCGCTGGCGAAGATGCTGAACG
GTACCGGGCAGTATTTATCGATAATATCCGCTACGCTGCCGACCGCTTTGCGCCACACGGCAAGCGAATA
TTAGTTGAAGCACTCAGCCCCGGCGTTAAGCCTCATTATCTCTTCTCCAGCCAGTATCAGGCACTGGCTA
TTGTTGAAGAGGTTGCGCGAGATAACGTGTTTATTCAACTAGATACTTTTCATGCGCAAAAAGTAGATGG
CAACCTGACGCATTTAATCCGCGACTACGCCGGGAAATATGCGCACGTACAAATTGCCGGACTACCTGAT
CGACATGAACCGGACGATGGAGAAATCAACTATCCGTGGCTGTTCCGCCTGTTCGATGAGGTGGGATATC
AGGGCTGGATCGGTTGTGAATATAAACCTCGTGGCCTCACCGAAGAAGGGCTTGGCTGGTTTGACGCCTG
GCGCTAA
# Upstream_100_bases:
GAAGAGCTGGAGGAAACGGCAAAGCTGATTTTTATTCTCGGTGACCGCCCGATCCGTTATCTGACCGCAG
GTGAAATTGCGGAATTAAGGAGTTAATGCA
# Blattner_No_Ontology:
Hypothetical, unclassified, unknown
# Gene_Position:
2862258-2863034 (Clockwise)
# Centisome_Position:
61.691
# Gene_Name:
ygbM
# GC_Content:
51.48%
# Metabolic_Importance:
Unknown
# Preceding_Gene:
ygbL
# Following_Gene:
ygbN
# Operon_Status:
Yes
# Operon_Components:
ygbL_ygbM Ref: RegulonDB http://kinich.cifn.unam.mx:8850/db/regulondb_cgi.query_simple?v_organism=ECK12&v_table=3&v_name=ygbM
# Paralogues:
b0508 (hyi) 40;
# Copy Number:
Unknown
# RNA_Copy_No.:
Log phase (2max): 0.09
Stationary phase (2max): 0.3
Ref: Nature Biotech., 18, 1262-68, Dec. 2000 (PMID=11101804)
# Genbank_ID_(DNA):
G1789095
# Genbank_ID_(Protein):
AAC75781.1
# SWISS_PROT_(AC_&_ID):
$ YGBM_ECOLI (Q46891)
# 2D_Gel_Image:
Not Available
# Other_Databases:
- ECOCYC: EG13107
- EcoGene: EG13107
- EMBL: U29579
- InterPro: IPR012307
- Pfam: PF01261
- PIR: G65054
# Pfam_Domain/Function:
PF01261 Xylose isomerase-like TIM barrel;
# Homologues:
Organism=Homo sapiens, GI13654272, Length=204, Positives=63%, Blast Score=156
Organism=Caenorhabditis elegans, GI17552022, Length=262, Positives=57%, Blast Score=156
Organism=Mus musculus, GI51709427, Length=188, Positives=63%, Blast Score=132
Organism=Drosophila melanogaster, GI17530883, Length=264, Positives=56%, Blast Score=161
# Similarity:
Belongs to the hyi family.
# EC_Number:
Not Available
# No._of_Amino_Acids:
258 (Translated Protein)
257 (Mature Protein)
# Molecular_Weight:
29217 29086
# Theoretical_pI:
4.90
# Theoretical_pI (Mature):
4.90
# Sequence:
// MPRFAANLSMMFTEVPFIERFAAARKAGFDAVEFLFPYNYSTLQIQKQLEQNHLTLALFN
// TAPGDINAGEWGLSALPGREHEAHADIDLALEYALALNCEQVHVMAGVVPAGEDAERYRA
// VFIDNIRYAADRFAPHGKRILVEALSPGVKPHYLFSSQYQALAIVEEVARDNVFIQLDTF
// HAQKVDGNLTHLIRDYAGKYAHVQIAGLPDRHEPDDGEINYPWLFRLFDEVGYQGWIGCE
// YKPRGLTEEGLGWFDAWR
// /\
// PRFAANLSMMFTEVPFIERFAAARKAGFDAVEFLFPYNYSTLQIQKQLEQNHLTLALFNT
// APGDINAGEWGLSALPGREHEAHADIDLALEYALALNCEQVHVMAGVVPAGEDAERYRAV
// FIDNIRYAADRFAPHGKRILVEALSPGVKPHYLFSSQYQALAIVEEVARDNVFIQLDTFH
// AQKVDGNLTHLIRDYAGKYAHVQIAGLPDRHEPDDGEINYPWLFRLFDEVGYQGWIGCEY
// KPRGLTEEGLGWFDAWR
# PROSITE_Motif:
Not Available
# Important_Sites:
Not Available
# Transmembrane:
Not Available
# Cys/Met_Content:
0.8 %Cys (Translated Protein)
1.6 %Met (Translated Protein)
2.3 %Cys+Met (Translated Protein)
0.8 %Cys (Mature Protein)
1.2 %Met (Mature Protein)
1.9 %Cys+Met (Mature Protein)
# Secondary_Structure_(PDB):
PRFAANLSFTEVPFIERFAAARKAGFDAVEFLFPYNYSTLQIQKQLEQNHL
CEEEEEECCCCCCHHHHHHHHHHHCCEEEEEECCCCCCHHHHHHHHHHHCE
TLALFNTAPGDINAGEWGLSALPGREHEAHADIDLALEYALALNCEQVHVA
EEEEEEECCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHCCEEEEEC
GVVPAGEDAERYRAVFIDNIRYAADRFAPHGKRILVEALSPGVKPHYLFSS
CEEECCCCHHHHHHHHHHHHHHHHHHHHHHCEEEEEEEEEHHHCCCCCCCC
QYQALAIVEEVARDNVFIQLDTFHAQKVDGNLTHLIRDYAGKYAHVQIAGL
HHHHHHHHHHHCCCCEEEEEEHHHHHHHCCCHHHHHHCCCCCEEEEEEEEE
PDRHEPDDGEINYPWLFRLFDEVGYQGWIGCEYKPRGLTEEGLGWFDAWRG
CCCCCCCCCCCCHHHHHHHHHHHCCCCEEEEEEEECCCCCCCHHHHHHHHH
S
C
# PDB_Accession:
& 1K77
# Resolution:
1.63
# Structure_CLASS:
Alpha Beta
# Quaternary_Structure:
Not Available
# Interacting_Partners:
1) DNA,
# Cofactors:
Not Available
# Metals_Ions:
Not Available
# Kcat_Value_[1/min]:
Not Available
# Specific_Activity_[micromol/min/mg]:
Not Available
# Km_Value_[mM]:
Not Available
# Substrates:
DNA
# Products:
Not Available
# Specific_Reaction:
Protein + DNA = Protein-DNA
# General_Reaction:
Not Available
# Inhibitor:
Not Available
# Priority:
0.0
# Status:
Selected, Cloned, Expressed
# Availability:
Northeast Structural Genomics Consortium
#END_ECARDFILE
#BEGIN_ECARDFILE
# Entry_ID:
CC0614A.1
# Accession_No.:
UA0000614
# Name:
Rare lipoprotein B precursor
# Alternate_Names:
Not Available
# General_Function:
Not Available
# COG_Function:
Cell wall/membrane/envelope biogenesis (code M)
# COG_ID:
COG2980 Rare lipoprotein B (Evalue = 1e-104)
# Specific_Function:
Not Available
# Riley_Gene_Function:
a minor lipoprotein
# Riley_Cell_Function:
>>>
Metabolism
Macromolecules (cellular constituent) biosynthesis
Lipoprotein
||
>>>
Location of gene products
Inner membrane
# Gene_Ontology:
>>>
Function: Not Available
||
>>>
Process: Not Available
||
>>>
Component: Not Available
# Location:
Attached To The Membrane By A Lipid Anchor
# Blattner_Number:
b0641
# Gene_Sequence:
GTGCGATATCTGGCAACATTGTTGTTATCTCTGGCGGTGTTAATCACCGCCGGGTGTGGCTGGCATCTGC
GTGATACCACGCAGGTTCCTTCCACTATGAAGGTCATGATCCTGGACTCAGGCGATCCGAACGGGCCATT
AAGCCGTGCGGTGCGTAACCAGTTACGTCTGAATGGTGTCGAGTTGCTTGATAAAGAAACCACGCGTAAG
GACGTTCCATCCTTGCGTTTGGGTAAAGTGAGCATCGCGAAAGATACCGCATCGGTATTCCGTAACGGTC
AAACAGCAGAGTATCAGATGATCATGACGGTTAATGCGACCGTGTTGATCCCCGGCCGTGATATCTACCC
GATTAGCGCCAAAGTCTTCCGTTCGTTCTTCGATAACCCGCAAATGGCGTTAGCGAAAGATAACGAACAA
GACATGATCGTAAAAGAGATGTACGACCGTGCTGCCGAACAGCTGATTCGTAAGCTGCCAAGCATCCGTG
CTGCGGATATTCGTTCCGACGAAGAACAGACGTCGACCACAACGGATACTCCGGCAACGCCTGCACGCGT
CTCCACCACGCTGGGTAACTGA
# Upstream_100_bases:
ATCTGGTAGCAAAATATCTTGATGGCGTTACTGTACGTAAAGTGATTTACGTACCAGGTAAACTCCTCAA
TCTGGTCGTTGGCTAAGCGCGGGAGGAAGC
# Blattner_No_Ontology:
Cell structure
# Gene_Position:
670828-671409 (Counter Clockwise)
# Centisome_Position:
14.471
# Gene_Name:
rlpB
# GC_Content:
52.23%
# Metabolic_Importance:
Non_Essential
# Preceding_Gene:
holA
# Following_Gene:
leuS
# Operon_Status:
Yes
# Operon_Components:
phpB_ybeN_holA_rlpB_leuS Ref: RegulonDB http://kinich.cifn.unam.mx:8850/db/regulondb_cgi.query_simple?v_organism=ECK12&v_table=3&v_name=rlpB
# Paralogues:
None
# Copy Number:
Unknown
# RNA_Copy_No.:
Log phase (2max): 0.07
Stationary phase (2max): 0.09
Ref: Nature Biotech., 18, 1262-68, Dec. 2000 (PMID=11101804)
# Genbank_ID_(DNA):
G1786860
# Genbank_ID_(Protein):
AAC73742.1
# SWISS_PROT_(AC_&_ID):
$ RLPB_ECOLI (P0ADC1)
# 2D_Gel_Image:
Not Available
# Other_Databases:
- ECOCYC: EG10855
- EcoGene: EG10855
- EMBL: M18277
- InterPro: IPR007485
- Pfam: PF04390
- PIR: G64798
- PROSITE: PS00013
# Pfam_Domain/Function:
PF04390 Rare lipoprotein B family;
# Homologues:
Not Available
# Similarity:
Belongs to the rlpB lipoprotein family.
# EC_Number:
Not Available
# No._of_Amino_Acids:
193 (Translated Protein)
170 (Mature Protein)
# Molecular_Weight:
21357 18859
# Theoretical_pI:
9.05
# Theoretical_pI (Mature):
8.93
# Sequence:
// MRYLATLLLSLAVLITAGCGWHLRDTTQVPSTMKVMILDSGDPNGPLSRAVRNQLRLNGV
// ELLDKETTRKDVPSLRLGKVSIAKDTASVFRNGQTAEYQMIMTVNATVLIPGRDIYPISA
// KVFRSFFDNPQMALAKDNEQDMIVKEMYDRAAEQLIRKLPSIRAADIRSDEEQTSTTTDT
// PATPARVSTTLGN
// /\
// RDTTQVPSTMKVMILDSGDPNGPLSRAVRNQLRLNGVELLDKETTRKDVPSLRLGKVSIA
// KDTASVFRNGQTAEYQMIMTVNATVLIPGRDIYPISAKVFRSFFDNPQMALAKDNEQDMI
// VKEMYDRAAEQLIRKLPSIRAADIRSDEEQTSTTTDTPATPARVSTTLGN
# PROSITE_Motif:
PROKAR_LIPOPROTEIN; RULE. PS00013; Prokaryotic membrane lipoprotein lipid attachment site. {DERK}(6)-[LIVMFWSTAG](2)-[LIVMFYSTAGCQ]-[AGS]-C. Additional rules:RU (1) The sequence must start with Met.RU (2) The cysteine must be between positions 15 and 35 of the sequence inRU consideration.RU (3) There must be at least one charged residue (Lys or Arg) in the firstRU seven residues of the sequence. PDOC00013; //
# Important_Sites:
Signal Chain 1 18
LIPID Site 19 19 N-ACYL DIGLYCERIDE
# Transmembrane:
Not Available
# Cys/Met_Content:
0.5 %Cys (Translated Protein)
4.1 %Met (Translated Protein)
4.7 %Cys+Met (Translated Protein)
0.0 %Cys (Mature Protein)
4.1 %Met (Mature Protein)
4.1 %Cys+Met (Mature Protein)
# Secondary_Structure:
>RLPB_ECOLI (Translated Protein)
MRYLATLLLSLAVLITAGCGWHLRDTTQVPSTMKVMILDSGDPNGPLSRAVRNQLRLNGV
CHHHHHHHHHHHHHHHHHCCCEECCCCCCCCCCCEEEEECCCCCCHHHHHHHHHHHHCCC
ELLDKETTRKDVPSLRLGKVSIAKDTASVFRNGQTAEYQMIMTVNATVLIPGRDIYPISA
EEECCCCCCCCCCEEEEEEEECCCEEEEEECCCCEEEEEEEEEEEEEEEECCCEEEEEEE
KVFRSFFDNPQMALAKDNEQDMIVKEMYDRAAEQLIRKLPSIRAADIRSDEEQTSTTTDT
EEEEEECCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHCCCCCC
PATPARVSTTLGN
CCCHHHHHHHCCC
/\
>RLPB_ECOLI (Mature Protein)
CGWHLRDTTQVPSTMKVMILDSGDPNGPLSRAVRNQLRLNGVELLDKETTRKDVPSLRLG
CCCEECCCCCCCCCCCEEEEECCCCCCHHHHHHHHHHHHCCCEEECCCCCCCCCCEEEEE
KVSIAKDTASVFRNGQTAEYQMIMTVNATVLIPGRDIYPISAKVFRSFFDNPQMALAKDN
EEECCCEEEEEECCCCEEEEEEEEEEEEEEEECCCEEEEEEEEEEEEECCCHHHHHHHHH
EQDMIVKEMYDRAAEQLIRKLPSIRAADIRSDEEQTSTTTDTPATPARVSTTLGN
HHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHCCCCCCCCCHHHHHHHCCC
# PDB_Accession:
& Not Available
# Resolution:
Not Available
# Structure_CLASS:
Alpha Beta
# Quaternary_Structure:
Not Available
# Interacting_Partners:
Unknown
# Cofactors:
Not Available
# Metals_Ions:
Not Available
# Kcat_Value_[1/min]:
Not Available
# Specific_Activity_[micromol/min/mg]:
Not Available
# Km_Value_[mM]:
Not Available
# Substrates:
Not Available
# Products:
Not Available
# Specific_Reaction:
Not Available
# General_Reaction:
Not Available
# Inhibitor:
Not Available
# Priority:
4.8
# Status:
Selected
# Availability:
NYSGXRC
#END_ECARDFILE
#BEGIN_ECARDFILE
# Entry_ID:
CC1259A.1
# Accession_No.:
UA0001259
# Name:
Guanylate kinase
# Alternate_Names:
GMP kinase
# General_Function:
P-loop containing nucleotide triphosphate hydrolases
# COG_Function:
Nucleotide transport and metabolism (code F)
# COG_ID:
COG0194 Guanylate kinase (Evalue = 1e-115)
# Specific_Function:
Essential for recycling GMP and indirectly, cGMP.
# Riley_Gene_Function:
guanylate kinase
# Riley_Cell_Function:
>>>
Metabolism
Building block biosynthesis
Nucleotide
Purine ribonucleotide biosynthesis
||
>>>
Metabolism
Central intermediary metabolism
Nucleotide and nucleoside conversions
||
>>>
Location of gene products
Cytoplasm
# Gene_Ontology:
>>>
Function: Not Available
||
>>>
Process: Not Available
||
>>>
Component: Not Available
# Location:
Cytoplasm
# Blattner_Number:
b3648
# Gene_Sequence:
ATGGCTCAAGGCACGCTTTATATTGTTTCTGCCCCCAGTGGCGCGGGTAAATCCAGCCTGATTCAGGCTT
TATTAAAAACCCAACCGTTGTATGACACCCAGGTTTCTGTTTCACACACCACACGCCAACCGCGTCCTGG
TGAAGTCCACGGTGAACATTATTTCTTTGTTAATCATGATGAATTTAAAGAAATGATTAGCAGAGATGCG
TTCCTCGAACACGCAGAAGTTTTTGGTAATTACTATGGCACTTCGCGTGAGGCCATTGAGCAAGTACTGG
CGACCGGTGTCGATGTTTTTCTCGATATCGACTGGCAGGGCGCGCAGCAAATTCGCCAGAAGATGCCGCA
CGCGCGGAGTATCTTTATTTTACCGCCGTCCAAAATTGAACTGGACCGCCGTCTACGCGGTCGCGGTCAG
GACAGCGAAGAGGTCATTGCAAAGCGTATGGCGCAAGCTGTTGCAGAAATGAGCCATTACGCCGAATATG
ATTATCTGATTGTGAATGATGACTTCGATACCGCGTTGACCGATTTGAAGACCATTATTCGCGCCGAACG
TCTGCGCATGAGCCGCCAAAAGCAGCGTCATGACGCTTTAATCAGCAAATTGTTGGCAGACTGA
# Upstream_100_bases:
TGCGCAAAAAGTGTGAGCAAGGGCTACGTCACATGGCCGCGCCGTGTATAATAAGCTCGTATGTAGGCTT
TATTTCGCTAATCACATACGAAAGATACTC
# Blattner_No_Ontology:
Nucleotide biosynthesis and metabolism
# Gene_Position:
3819451-3820074 (Clockwise)
# Centisome_Position:
82.322
# Gene_Name:
gmk or spoR
# GC_Content:
49.04%
# Metabolic_Importance:
Essential
# Preceding_Gene:
yicF
# Following_Gene:
rpoZ
# Operon_Status:
Yes
# Operon_Components:
gmk_rpoZ_spoT_spoU_recG Ref: Center for Information Biology and DNA Data Bank of Japan, National Institute of Genetics http://www.cib.nig.ac.jp/dda/taitoh/ecoli.operon.html
# Paralogues:
b4094 (phnN) 27;
# Copy Number:
Unknown
# RNA_Copy_No.:
Log phase (2max): 0.1
Stationary phase (2max): 0.31
Ref: Nature Biotech., 18, 1262-68, Dec. 2000 (PMID=11101804)
# Genbank_ID_(DNA):
G1790080
# Genbank_ID_(Protein):
AAC76672.1
# SWISS_PROT_(AC_&_ID):
$ KGUA_ECOLI (P60546)
# 2D_Gel_Image:
Not Available
# Other_Databases:
- ECOCYC: EG10965
- EcoGene: EG10965
- EMBL: M84400
- InterPro: IPR008144; IPR008145
- Pfam: PF00625
- PIR: S43041
- PROSITE: PS00856
# Pfam_Domain/Function:
PF00625 Guanylate kinase
# Homologues:
Organism=Homo sapiens, GI4504221, Length=197, Positives=57%, Blast Score=130
Organism=Homo sapiens, GI38570142, Length=675, Positives=47%, Blast Score=82.0
Organism=Homo sapiens, GI27735101, Length=576, Positives=46%, Blast Score=78.2
Organism=Homo sapiens, GI14780902, Length=637, Positives=48%, Blast Score=75.5
Organism=Homo sapiens, GI21361598, Length=540, Positives=49%, Blast Score=74.7
Organism=Homo sapiens, GI4505237, Length=466, Positives=44%, Blast Score=70.1
Organism=Homo sapiens, GI18765725, Length=552, Positives=48%, Blast Score=68.2
Organism=Homo sapiens, GI21536464, Length=585, Positives=46%, Blast Score=67.0
Organism=Homo sapiens, GI4502567, Length=921, Positives=46%, Blast Score=65.9
Organism=Homo sapiens, GI21389483, Length=825, Positives=44%, Blast Score=65.5
Organism=Caenorhabditis elegans, GI17508835, Length=216, Positives=58%, Blast Score=130
Organism=Caenorhabditis elegans, GI17568921, Length=620, Positives=47%, Blast Score=68.2
Organism=Caenorhabditis elegans, GI17568923, Length=961, Positives=47%, Blast Score=68.2
Organism=Caenorhabditis elegans, GI25147100, Length=967, Positives=48%, Blast Score=67.4
Organism=Caenorhabditis elegans, GI17557440, Length=668, Positives=44%, Blast Score=63.2
Organism=Saccharomyces cerevisiae, GI6320662, Length=187, Positives=65%, Blast Score=146
Organism=Mus musculus, GI6680137, Length=198, Positives=58%, Blast Score=133
Organism=Mus musculus, GI9625023, Length=675, Positives=47%, Blast Score=82.0
Organism=Mus musculus, GI21553099, Length=485, Positives=47%, Blast Score=75.5
Organism=Mus musculus, GI9910474, Length=539, Positives=49%, Blast Score=73.6
Organism=Mus musculus, GI7710062, Length=552, Positives=48%, Blast Score=68.9
Organism=Mus musculus, GI20916032, Length=820, Positives=44%, Blast Score=67.4
Organism=Mus musculus, GI6678924, Length=466, Positives=44%, Blast Score=67.0
Organism=Mus musculus, GI6681193, Length=568, Positives=47%, Blast Score=63.9
Organism=Drosophila melanogaster, GI21356141, Length=233, Positives=57%, Blast Score=129
Organism=Drosophila melanogaster, GI45554481, Length=879, Positives=47%, Blast Score=71.6
Organism=Drosophila melanogaster, GI24640542, Length=1292, Positives=47%, Blast Score=71.6
Organism=Drosophila melanogaster, GI45554489, Length=1367, Positives=47%, Blast Score=71.6
Organism=Drosophila melanogaster, GI45554469, Length=1606, Positives=47%, Blast Score=71.6
# Similarity:
Belongs to the guanylate kinase family. Contains 1 guanylate kinase-like domain.
# EC_Number:
2.7.4.8
# No._of_Amino_Acids:
207 (Translated Protein)
206 (Mature Protein)
# Molecular_Weight:
23593 23462
# Theoretical_pI:
6.52
# Theoretical_pI (Mature):
6.52
# Sequence:
// MAQGTLYIVSAPSGAGKSSLIQALLKTQPLYDTQVSVSHTTRQPRPGEVHGEHYFFVNHD
// EFKEMISRDAFLEHAEVFGNYYGTSREAIEQVLATGVDVFLDIDWQGAQQIRQKMPHARS
// IFILPPSKIELDRRLRGRGQDSEEVIAKRMAQAVAEMSHYAEYDYLIVNDDFDTALTDLK
// TIIRAERLRMSRQKQRHDALISKLLAD
// /\
// AQGTLYIVSAPSGAGKSSLIQALLKTQPLYDTQVSVSHTTRQPRPGEVHGEHYFFVNHDE
// FKEMISRDAFLEHAEVFGNYYGTSREAIEQVLATGVDVFLDIDWQGAQQIRQKMPHARSI
// FILPPSKIELDRRLRGRGQDSEEVIAKRMAQAVAEMSHYAEYDYLIVNDDFDTALTDLKT
// IIRAERLRMSRQKQRHDALISKLLAD
# PROSITE_Motif:
GUANYLATE_KINASE_1; PATTERN. PS00856; Guanylate kinase signature. T-[ST]-R-x(2)-[KR]-x(2)-[DE]-x(2)-G-x(2)-Y-x-[FY]-[LIVMK]. PDOC00670; //
# Important_Sites:
Not Available
# Transmembrane:
Not Available
# Cys/Met_Content:
0.0 %Cys (Translated Protein)
2.9 %Met (Translated Protein)
2.9 %Cys+Met (Translated Protein)
0.0 %Cys (Mature Protein)
2.4 %Met (Mature Protein)
2.4 %Cys+Met (Mature Protein)
# Secondary_Structure_(PDB):
SRPIVISGPSGTGKSTLLKKLFAEYPDSFGFSVSSTTRTPRAGEVNGKDYN
CEEEEEECCCCCCHHHHHHHHHHHCCCEEEEEEEEEEECCCCCCCCCCCEE
FVSVDEFKSMIKNNEFIEWAQFSGNYYGSTVASVKQVSKSGKTCILDIDMQ
EECHHHHHHHHHHCCEEEEECCCCEEEEEEHHHHHHHHHHCEEEEEEEHHH
GVKSVKAIPELNARFLFIAPPSVEDLKKRLEGRGTETEESINKRLSAAQAE
HHHHHHHCCCCCEEEEEEECCCHHHHHHHHHHHCCCCHHHHHHHHHHHHHH
LAYAETGAHDKVIVNDDLDKAYKELKDFIFAEK
HHHHHHCCCEEEEEECCHHHHHHHHHHHHHHCC
# PDB_Accession:
& Model Based on 1EX7 (4-187)
# Resolution:
Not Available
# Structure_CLASS:
Alpha Beta
# Quaternary_Structure:
homotetramer (under low ionic conditions) or homodimer (under high ionic conditions)
# Interacting_Partners:
Unknown
# Cofactors:
--Mg2+
# Metals_Ions:
--Co2+ --K+ --Mg2+ --Mn2+ --NH4+
# Kcat_Value_[1/min]:
Not Available
# Specific_Activity_[micromol/min/mg]:
Not Available
# Km_Value_[mM]:
Not Available
# Substrates:
ATP + dGMP
# Products:
ADP + dGDP
# Specific_Reaction:
ATP + dGMP <==> ADP + dGDP
# General_Reaction:
Phospho group transfer;
# Inhibitor:
Not Available
# Priority:
1.0
# Status:
Not Available
# Availability:
Not Available
#END_ECARDFILE
#BEGIN_ECARDFILE
# Entry_ID:
CC1850A.1
# Accession_No.:
UA0001850
# Name:
Hypothetical protein yjcC
# Alternate_Names:
Not Available
# General_Function:
Unknown
# COG_Function:
Signal transduction mechanisms (code T)
# COG_ID:
COG4943 Predicted signal transduction protein containing sensor and EAL domains (Evalue = 0.0)
# Specific_Function:
Not Available
# Riley_Gene_Function:
predicted signal transduction protein (EAL domain containing protein)
# Riley_Cell_Function:
>>>
Not Available
# Gene_Ontology:
>>>
Function: molecular function unknown
||
>>>
Process: Not Available
||
>>>
Component: Not Available
# Location:
Cytoplasm
# Blattner_Number:
b4061
# Gene_Sequence:
ATGAGTCATCGTGCACGACACCAATTACTGGCGTTGCCGGGCATTATCTTTTTAGTTCTCTTTCCCATCA
TTCTTTCGCTATGGATTGCCTTCCTTTGGGCAAAATCAGAAGTGAATAATCAGCTCCGAACCTTTGCTCA
ACTGGCACTGGATAAATCCGAGCTGGTCATTCGCCAGGCAGATTTAGTGAGCGATGCAGCTGAACGCTAT
CAGGGGCAAGTTTGCACTCCAGCCCATCAAAAGCGAATGTTGAATATTATTCGTGGCTATCTTTATATTA
ATGAATTGATCTATGCCCGTGATAACCATTTTTTATGCTCATCGCTGATAGCGCCTGTAAACGGCTATAC
GATTGCACCGGCCGATTATAAGCGTGAACCTAACGTTTCTATCTATTATTACCGCGATACGCCTTTTTTC
TCTGGCTATAAAATGACCTATATGCAGCGGGGAAATTATGTGGCGGTTATCAACCCTCTCTTCTGGAGTG
AAGTGATGTCTGATGACCCGACATTGCAATGGGGTGTGTATGATACGGTGACGAAAACCTTTTTCTCGTT
AAGCAAAGAGGCCTCGGCAGCAACGTTTTCTCCGCTGATTCATTTGAAGGATTTAACCGTACAAAGAAAT
GGCTATTTATATGCGACAGTTTATTCGACAAAACGCCCAATTGCAGCCATTGTTGCGACTTCATATCAAC
GTCTTATAACCCATTTTTATAATCATCTTATTTTTGCGTTGCCCGCCGGTATTTTGGGGAGTCTTGTTCT
GCTATTACTCTGGCTACGTATTCGACAAAACTATTTATCTCCCAAACGTAAATTGCAACGCGCCCTCGAA
AAACATCAACTTTGTCTTTATTACCAGCCAATAATCGATATCAAAACAGAAAAATGTATCGGCGCTGAAG
CGTTGTTACGTTGGCCTGGTGAGCAGGGGCAAATAATGAATCCGGCAGAGTTTATTCCGCTGGCAGAAAA
GGAGGGGATGATAGAACAGATAACTGATTATGTTATTGATAATGTCTTCCGCGATCTGGGCGATTACCTG
GCAACACATGCAGATCGCTATGTTTCTATTAACCTGTCGGCCTCCGATTTTCATACGTCACGGTTGATAG
CGCGAATCAATCAGAAAACAGAGCAATACGCGGTGCGTCCGCAGCAAATTAAATTTGAAGTGACTGAGCA
TGCATTTCTTGATGTTGACAAAATGACGCCGATTATTCTGGCTTTCCGCCAGGCAGGTTACGAAGTGGCA
ATTGATGATTTTGGTATTGGCTACTCTAACTTGCATAACCTTAAATCATTGAATGTCGATATTTTGAAAA
TCGACAAATCGTTTGTTGAAACGCTGACCACCCACAAAACCAGTCATTTGATTGCGGAACACATCATCGA
GCTGGCGCACAGCCTGGGGTTAAAAACGATCGCTGAAGGCGTCGAAACTGAGGAGCAGGTTAACTGGCTG
CGCAAACGCGGCGTGCGCTATTGCCAGGGATGGTTCTTTGCGAAGGCGATGCCGCCGCAGGTGTTTATGC
AATGGATGGAGCAATTACCCGCGCGGGAGTTAACGCGCGGGCAATAA
# Upstream_100_bases:
CAAAAGTGCTATTTATACCGTAAGATTTATCTAAAGACGTCGGTACCCAGGGTTTTCACCTTGCAATGGC
CGGGTATAAACAGGCAGGAAATTGATAGCA
# Blattner_No_Ontology:
Hypothetical, unclassified, unknown
# Gene_Position:
4273494-4275080 (Clockwise)
# Centisome_Position:
92.108
# Gene_Name:
yjcC
# GC_Content:
44.74%
# Metabolic_Importance:
Unknown
# Preceding_Gene:
yjcB
# Following_Gene:
soxS
# Operon_Status:
No
# Operon_Components:
None
# Paralogues:
b0457 (ylaB) 33; b2176 (rtn) 25;
# Copy Number:
Unknown
# RNA_Copy_No.:
Log phase (2max): 1.28
Stationary phase (2max): 0.32
Ref: Nature Biotech., 18, 1262-68, Dec. 2000 (PMID=11101804)
# Genbank_ID_(DNA):
G1790496
# Genbank_ID_(Protein):
AAC77031.1
# SWISS_PROT_(AC_&_ID):
$ YJCC_ECOLI (P32701)
# 2D_Gel_Image:
Not Available
# Other_Databases:
- ECOCYC: EG11938
- EcoGene: EG11938
- EMBL: U00006
- InterPro: IPR001633
- Pfam: PF00563
- PIR: D65214
- PROSITE: PS50883
# Pfam_Domain/Function:
PF00563 EAL domain
# Homologues:
Not Available
# Similarity:
Contains 1 EAL domain.
# EC_Number:
Not Available
# No._of_Amino_Acids:
528 (Translated Protein)
494 (Mature Protein)
# Molecular_Weight:
60802 56862
# Theoretical_pI:
8.57
# Theoretical_pI (Mature):
8.18
# Sequence:
// MSHRARHQLLALPGIIFLVLFPIILSLWIAFLWAKSEVNNQLRTFAQLALDKSELVIRQA
// DLVSDAAERYQGQVCTPAHQKRMLNIIRGYLYINELIYARDNHFLCSSLIAPVNGYTIAP
// ADYKREPNVSIYYYRDTPFFSGYKMTYMQRGNYVAVINPLFWSEVMSDDPTLQWGVYDTV
// TKTFFSLSKEASAATFSPLIHLKDLTVQRNGYLYATVYSTKRPIAAIVATSYQRLITHFY
// NHLIFALPAGILGSLVLLLLWLRIRQNYLSPKRKLQRALEKHQLCLYYQPIIDIKTEKCI
// GAEALLRWPGEQGQIMNPAEFIPLAEKEGMIEQITDYVIDNVFRDLGDYLATHADRYVSI
// NLSASDFHTSRLIARINQKTEQYAVRPQQIKFEVTEHAFLDVDKMTPIILAFRQAGYEVA
// IDDFGIGYSNLHNLKSLNVDILKIDKSFVETLTTHKTSHLIAEHIIELAHSLGLKTIAEG
// VETEEQVNWLRKRGVRYCQGWFFAKAMPPQVFMQWMEQLPARELTRGQ
// /\
// KSEVNNQLRTFAQLALDKSELVIRQADLVSDAAERYQGQVCTPAHQKRMLNIIRGYLYIN
// ELIYARDNHFLCSSLIAPVNGYTIAPADYKREPNVSIYYYRDTPFFSGYKMTYMQRGNYV
// AVINPLFWSEVMSDDPTLQWGVYDTVTKTFFSLSKEASAATFSPLIHLKDLTVQRNGYLY
// ATVYSTKRPIAAIVATSYQRLITHFYNHLIFALPAGILGSLVLLLLWLRIRQNYLSPKRK
// LQRALEKHQLCLYYQPIIDIKTEKCIGAEALLRWPGEQGQIMNPAEFIPLAEKEGMIEQI
// TDYVIDNVFRDLGDYLATHADRYVSINLSASDFHTSRLIARINQKTEQYAVRPQQIKFEV
// TEHAFLDVDKMTPIILAFRQAGYEVAIDDFGIGYSNLHNLKSLNVDILKIDKSFVETLTT
// HKTSHLIAEHIIELAHSLGLKTIAEGVETEEQVNWLRKRGVRYCQGWFFAKAMPPQVFMQ
// WMEQLPARELTRGQ
# PROSITE_Motif:
Not Available
# Important_Sites:
Not Available
# Transmembrane:
Not Available
# Cys/Met_Content:
0.9 %Cys (Translated Protein)
2.1 %Met (Translated Protein)
3.0 %Cys+Met (Translated Protein)
1.0 %Cys (Mature Protein)
2.0 %Met (Mature Protein)
3.0 %Cys+Met (Mature Protein)
# Secondary_Structure:
>YJCC_ECOLI (Translated Protein)
MSHRARHQLLALPGIIFLVLFPIILSLWIAFLWAKSEVNNQLRTFAQLALDKSELVIRQA
CCCCCCCEEEEHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
DLVSDAAERYQGQVCTPAHQKRMLNIIRGYLYINELIYARDNHFLCSSLIAPVNGYTIAP
HHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHEEEEECCCCEEEEEECCCCCCCCCCCC
ADYKREPNVSIYYYRDTPFFSGYKMTYMQRGNYVAVINPLFWSEVMSDDPTLQWGVYDTV
CCCCCCCCEEEEEECCCCCCCCCCCCCCCCCCEEEEECHHHHHCCCCCCCHHHHHHHCCC
TKTFFSLSKEASAATFSPLIHLKDLTVQRNGYLYATVYSTKRPIAAIVATSYQRLITHFY
CEEEEEECCCCCHHHCCCCCCCCCCCCCCEEEEEEEECCCCCCCHHHHHHHHHHHHHHHH
NHLIFALPAGILGSLVLLLLWLRIRQNYLSPKRKLQRALEKHQLCLYYQPIIDIKTEKCI
HHHHHCCCCCCCCCEEEHHHHHHHHHHHHHHHHHHHHHHHCCCEEEEEEEEEECCCCEEE
GAEALLRWPGEQGQIMNPAEFIPLAEKEGMIEQITDYVIDNVFRDLGDYLATHADRYVSI
EEEEEEEEECCCCCCCCHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHCCCCCEEEE
NLSASDFHTSRLIARINQKTEQYAVRPQQIKFEVTEHAFLDVDKMTPIILAFRQAGYEVA
ECCHHHHCCCCHHHHHHHHHHHCCCCHHHEEEEECCHHHHCHHHHHHHHHHHHHCCCEEE
IDDFGIGYSNLHNLKSLNVDILKIDKSFVETLTTHKTSHLIAEHIIELAHSLGLKTIAEG
EEEECCCCCCHHHHHHCCCCEEECCHHHHHHHCCCHHHHHHHHHHHHHHHHCCCCEEEEE
VETEEQVNWLRKRGVRYCQGWFFAKAMPPQVFMQWMEQLPARELTRGQ
ECCHHHHHHHHHCCCCEEHHHHCCCCCCHHHHHHHHHCCCCHHCCCCC
/\
>YJCC_ECOLI (Mature Protein)
SHRARHQLLALPGIIFLVLFPIILSLWIAFLWAKSEVNNQLRTFAQLALDKSELVIRQAD
CCCCCCEEEEHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
LVSDAAERYQGQVCTPAHQKRMLNIIRGYLYINELIYARDNHFLCSSLIAPVNGYTIAPA
HHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHEEEEECCCCEEEEEECCCCCCCCCCCCC
DYKREPNVSIYYYRDTPFFSGYKMTYMQRGNYVAVINPLFWSEVMSDDPTLQWGVYDTVT
CCCCCCCEEEEEECCCCCCCCCCCCCCCCCCEEEEECHHHHHCCCCCCCHHHHHHHCCCC
KTFFSLSKEASAATFSPLIHLKDLTVQRNGYLYATVYSTKRPIAAIVATSYQRLITHFYN
EEEEEECCCCCHHHCCCCCCCCCCCCCCEEEEEEEECCCCCCCHHHHHHHHHHHHHHHHH
HLIFALPAGILGSLVLLLLWLRIRQNYLSPKRKLQRALEKHQLCLYYQPIIDIKTEKCIG
HHHHCCCCCCCCCEEEHHHHHHHHHHHHHHHHHHHHHHHCCCEEEEEEEEEECCCCEEEE
AEALLRWPGEQGQIMNPAEFIPLAEKEGMIEQITDYVIDNVFRDLGDYLATHADRYVSIN
EEEEEEEECCCCCCCCHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHCCCCCEEEEE
LSASDFHTSRLIARINQKTEQYAVRPQQIKFEVTEHAFLDVDKMTPIILAFRQAGYEVAI
CCHHHHCCCCHHHHHHHHHHHCCCCHHHEEEEECCHHHHCHHHHHHHHHHHHHCCCEEEE
DDFGIGYSNLHNLKSLNVDILKIDKSFVETLTTHKTSHLIAEHIIELAHSLGLKTIAEGV
EEECCCCCCHHHHHHCCCCEEECCHHHHHHHCCCHHHHHHHHHHHHHHHHCCCCEEEEEE
ETEEQVNWLRKRGVRYCQGWFFAKAMPPQVFMQWMEQLPARELTRGQ
CCHHHHHHHHHCCCCEEHHHHCCCCCCHHHHHHHHHCCCCHHCCCCC
# PDB_Accession:
& Not Available
# Resolution:
Not Available
# Structure_CLASS:
Alpha Beta
# Quaternary_Structure:
Not Available
# Interacting_Partners:
1) ycdT (hypothetical),
# Cofactors:
Not Available
# Metals_Ions:
Not Available
# Kcat_Value_[1/min]:
Not Available
# Specific_Activity_[micromol/min/mg]:
Not Available
# Km_Value_[mM]:
Not Available
# Substrates:
Not Available
# Products:
Not Available
# Specific_Reaction:
Not Available
# General_Reaction:
Not Available
# Inhibitor:
Not Available
# Priority:
9.2
# Status:
Selected, Cloned, Expressed, Soluble
# Availability:
Montreal-Kingston Bacterial Structural Genomics Initiative
#END_ECARDFILE
#BEGIN_ECARDFILE
# Entry_ID:
CC0803A.1
# Accession_No.:
UA0000803
# Name:
ATP-dependent DNA helicase recQ
# Alternate_Names:
Not Available
# General_Function:
Replication; P-loop containing nucleotide triphosphate hydrolases
# COG_Function:
Replication, recombination and repair (code L)
# COG_ID:
COG0514 Superfamily II DNA helicase (Evalue = 0.0)
# Specific_Function:
Gene recQ is regulated by transcriptional attenuation. Involved in the recF recombination pathway; its gene expression is under the regulation of the SOS system. It is a DNA helicase.
# Riley_Gene_Function:
ATP-dependent DNA helicase
# Riley_Cell_Function:
>>>
Information transfer
DNA related
DNA replication
||
>>>
Information transfer
DNA related
DNA recombination
||
>>>
Information transfer
DNA related
DNA repair
||
>>>
Location of gene products
Cytoplasm
# Gene_Ontology:
>>>
Function: catalytic activity
Function: helicase activity
Function: DNA helicase activity
Function: ATP-dependent DNA helicase activity
||
>>>
Function: ATP-dependent helicase activity
Function: ATP-dependent DNA helicase activity
||
>>>
Function: hydrolase activity
Function: hydrolase activity, acting on acid anhydrides
Function: hydrolase activity, acting on acid anhydrides, in phosphorus-containing anhydrides
Function: pyrophosphatase activity
Function: nucleoside-triphosphatase activity
Function: ATPase activity
Function: ATPase activity, coupled
Function: ATP-dependent helicase activity
Function: ATP-dependent DNA helicase activity
||
>>>
Function: DNA-dependent ATPase activity
Function: ATP-dependent DNA helicase activity
||
>>>
Function: binding
Function: nucleic acid binding
||
>>>
Function: binding
Function: nucleic acid binding
||
>>>
Function: binding
Function: nucleic acid binding
||
>>>
Function: binding
Function: nucleic acid binding
||
>>>
Function: binding
Function: nucleic acid binding
||
>>>
Function: catalytic activity
Function: helicase activity
Function: ATP-dependent helicase activity
||
>>>
Function: hydrolase activity
Function: hydrolase activity, acting on acid anhydrides
Function: hydrolase activity, acting on acid anhydrides, in phosphorus-containing anhydrides
Function: pyrophosphatase activity
Function: nucleoside-triphosphatase activity
Function: ATPase activity
Function: ATPase activity, coupled
Function: ATP-dependent helicase activity
||
>>>
Function: binding
Function: nucleic acid binding
Function: DNA binding
||
>>>
Process: physiological process
Process: metabolism
Process: macromolecule metabolism
Process: biopolymer metabolism
Process: DNA metabolism
Process: DNA recombination
||
>>>
Process: cellular metabolism
Process: nucleobase, nucleoside, nucleotide and nucleic acid metabolism
Process: DNA metabolism
Process: DNA recombination
||
>>>
Process: primary metabolism
Process: nucleobase, nucleoside, nucleotide and nucleic acid metabolism
Process: DNA metabolism
Process: DNA recombination
||
>>>
Process: cellular physiological process
Process: cellular metabolism
Process: nucleobase, nucleoside, nucleotide and nucleic acid metabolism
Process: DNA metabolism
Process: DNA recombination
||
>>>
Process: cellular process
Process: cellular physiological process
Process: cellular metabolism
Process: nucleobase, nucleoside, nucleotide and nucleic acid metabolism
Process: DNA metabolism
Process: DNA recombination
Process: physiological process
Process: metabolism
Process: macromolecule metabolism
Process: biopolymer metabolism
Process: DNA metabolism
Process: DNA recombination
||
>>>
Process: cellular metabolism
Process: nucleobase, nucleoside, nucleotide and nucleic acid metabolism
Process: DNA metabolism
Process: DNA recombination
||
>>>
Process: primary metabolism
Process: nucleobase, nucleoside, nucleotide and nucleic acid metabolism
Process: DNA metabolism
Process: DNA recombination
||
>>>
Process: cellular physiological process
Process: cellular metabolism
Process: nucleobase, nucleoside, nucleotide and nucleic acid metabolism
Process: DNA metabolism
Process: DNA recombination
||
>>>
Process: cellular process
Process: cellular physiological process
Process: cellular metabolism
Process: nucleobase, nucleoside, nucleotide and nucleic acid metabolism
Process: DNA metabolism
Process: DNA recombination
||
>>>
Component: cell
Component: intracellular
# Location:
Cytoplasm
# Blattner_Number:
b3822
# Gene_Sequence:
GTGGCGCAGGCGGAAGTGTTGAATCTGGAGTCCGGAGCTAAACAGGTTTTACAAGAAACCTTTGGCTACC
AACAGTTTCGCCCCGGCCAGGAAGAAATTATCGACACTGTGCTTTCCGGCCGCGATTGCCTCGTCGTCAT
GCCCACTGGTGGCGGAAAATCCCTTTGCTATCAAATCCCTGCCTTATTGCTAAACGGCCTTACCGTGGTT
GTTTCACCGCTGATTTCGTTGATGAAAGATCAGGTGGATCAACTGCAAGCCAACGGCGTGGCGGCGGCGT
GCCTTAACTCGACGCAAACCCGCGAACAGCAACTTGAAGTGATGACAGGCTGCCGCACCGGGCAAATTCG
TCTGCTTTATATCGCCCCGGAACGCCTGATGCTGGATAACTTTCTTGAGCATCTGGCGCACTGGAATCCG
GTGTTATTAGCCGTTGATGAAGCGCACTGTATCTCCCAATGGGGCCACGATTTCCGCCCGGAATATGCCG
CGCTCGGTCAGTTGCGCCAGCGGTTCCCGACGCTGCCGTTTATGGCGCTGACCGCCACAGCCGACGACAC
CACGCGCCAGGATATCGTGCGCCTGCTGGGGCTGAACGATCCGCTGATTCAAATCAGCAGTTTTGACCGT
CCGAATATTCGCTACATGCTGATGGAGAAGTTCAAACCGCTCGATCAGTTGATGCGCTACGTGCAGGAAC
AGCGCGGTAAGTCAGGCATTATCTACTGCAACAGCCGCGCGAAAGTAGAAGACACCGCTGCGCGCCTGCA
AAGCAAGGGAATTAGCGCGGCGGCCTATCATGCCGGGCTGGAAAATAATGTTCGCGCCGATGTGCAGGAA
AAATTCCAGCGCGATGACCTGCAAATTGTGGTGGCGACGGTGGCGTTCGGCATGGGCATCAATAAACCAA
ACGTTCGCTTCGTGGTCCACTTTGATATTCCGCGCAATATCGAATCCTATTATCAGGAAACCGGACGCGC
CGGGCGTGATGGCCTGCCCGCGGAAGCGATGCTGTTTTACGATCCGGCTGATATGGCGTGGCTGCGCCGT
TGTCTGGAAGAGAAGCCGCAGGGGCAGTTGCAGGATATCGAGCGCCACAAACTCAATGCGATGGGCGCGT
TTGCCGAAGCGCAAACTTGCCGTCGTCTGGTATTGCTGAACTATTTTGGCGAAGGGCGTCAGGAGCCGTG
CGGGAACTGCGATATCTGCCTCGATCCGCCGAAACAGTACGACGGTTCAACCGATGCTCAGATTGCCCTT
TCCACCATTGGTCGTGTGAATCAGCGGTTTGGGATGGGTTATGTGGTGGAAGTGATTCGTGGTGCTAATA
ACCAGCGTATCCGCGACTATGGTCATGACAAACTGAAAGTCTATGGCATGGGCCGTGATAAAAGCCATGA
ACATTGGGTGAGCGTGATCCGCCAGCTGATTCACCTCGGCCTGGTGACGCAAAATATTGCCCAGCATTCT
GCCCTACAACTGACAGAGGCCGCGCGCCCGGTGCTGCGCGGCGAATCCTCTTTGCAACTTGCCGTGCCGC
GTATCGTGGCGCTCAAACCGAAAGCGATGCAGAAATCGTTCGGCGGCAACTATGATCGCAAACTGTTCGC
CAAATTACGCAAACTGCGTAAATCGATAGCCGATGAAAGTAATGTCCCGCCGTACGTGGTGTTTAACGAC
GCAACCTTGATTGAGATGGCTGAACAGATGCCGATCACCGCCAGCGAAATGCTCAGCGTTAACGGCGTTG
GGATGCGCAAGCTGGAACGCTTTGGCAAACCGTTTATGGCGCTGATTCGTGCGCATGTTGATGGCGATGA
CGAAGAGTAG
# Upstream_100_bases:
CAGCATCCAGGATTACCCTCTCAGAGACTAAAAGCATTGCAGTTTCTCGCGCAGGCGCTGAAAATAGCGC
CTGTTTTTATTTCAGGCAATCGGGGTGAAT
# Blattner_No_Ontology:
DNA replication, recombination, modification and repair
# Gene_Position:
4003887-4005716 (Clockwise)
# Centisome_Position:
86.297
# Gene_Name:
recQ
# GC_Content:
55.14%
# Metabolic_Importance:
Non_Essential
# Preceding_Gene:
pldA
# Following_Gene:
rhtC
# Operon_Status:
No
# Operon_Components:
None
# Paralogues:
b3162 (deaD) 25;
# Copy Number:
Unknown
# RNA_Copy_No.:
Log phase (2max): 0.05
Stationary phase (2max): 0.11
Ref: Nature Biotech., 18, 1262-68, Dec. 2000 (PMID=11101804)
# Genbank_ID_(DNA):
G2367301
# Genbank_ID_(Protein):
AAC76825.1
# SWISS_PROT_(AC_&_ID):
$ RECQ_ECOLI (P15043)
# 2D_Gel_Image:
Not Available
# Other_Databases:
- ECOCYC: EG10833
- EcoGene: EG10833
- EMBL: M30198
- InterPro: IPR006293; IPR001410; IPR011545; IPR002464; IPR001650; IPR002121; IPR004589; IPR002857
- Pfam: PF00270; PF00271; PF00570; PF02008
- PROSITE: PS00690
# Pfam_Domain/Function:
PF00270 DEAD/DEAH box helicase; PF00271 Helicase conserved C-terminal domain; PF00570 HRDC domain; PF02008 CXXC zinc finger;
# Homologues:
Organism=Homo sapiens, GI4557365, Length=1417, Positives=52%, Blast Score=312
Organism=Homo sapiens, GI5739524, Length=1432, Positives=56%, Blast Score=310
Organism=Homo sapiens, GI14591904, Length=649, Positives=60%, Blast Score=284
Organism=Homo sapiens, GI14591902, Length=649, Positives=60%, Blast Score=284
Organism=Homo sapiens, GI33238872, Length=991, Positives=54%, Blast Score=265
Organism=Homo sapiens, GI4759030, Length=1208, Positives=56%, Blast Score=232
Organism=Homo sapiens, GI10346129, Length=648, Positives=43%, Blast Score=76.3
Organism=Homo sapiens, GI9507237, Length=724, Positives=40%, Blast Score=74.7
Organism=Homo sapiens, GI13518015, Length=724, Positives=40%, Blast Score=74.7
Organism=Homo sapiens, GI13514831, Length=875, Positives=43%, Blast Score=72.8
Organism=Homo sapiens, GI4758138, Length=614, Positives=42%, Blast Score=69.3
Organism=Homo sapiens, GI33186884, Length=630, Positives=40%, Blast Score=68.6
Organism=Caenorhabditis elegans, GI25145561, Length=988, Positives=52%, Blast Score=330
Organism=Caenorhabditis elegans, GI32564293, Length=1056, Positives=47%, Blast Score=291
Organism=Caenorhabditis elegans, GI17554024, Length=674, Positives=56%, Blast Score=274
Organism=Caenorhabditis elegans, GI17552866, Length=809, Positives=55%, Blast Score=258
Organism=Caenorhabditis elegans, GI17561644, Length=561, Positives=42%, Blast Score=73.2
Organism=Caenorhabditis elegans, GI17507121, Length=399, Positives=41%, Blast Score=68.6
Organism=Caenorhabditis elegans, GI17555296, Length=489, Positives=39%, Blast Score=67.4
Organism=Saccharomyces cerevisiae, GI6323844, Length=1447, Positives=57%, Blast Score=319
Organism=Saccharomyces cerevisiae, GI6320224, Length=399, Positives=41%, Blast Score=80.9
Organism=Saccharomyces cerevisiae, GI6322912, Length=395, Positives=40%, Blast Score=77.8
Organism=Saccharomyces cerevisiae, GI6322323, Length=395, Positives=40%, Blast Score=77.8
Organism=Saccharomyces cerevisiae, GI6324217, Length=546, Positives=46%, Blast Score=77.0
Organism=Saccharomyces cerevisiae, GI6320041, Length=506, Positives=43%, Blast Score=75.9
Organism=Saccharomyces cerevisiae, GI37362659, Length=501, Positives=40%, Blast Score=70.5
Organism=Saccharomyces cerevisiae, GI6323947, Length=505, Positives=40%, Blast Score=65.9
Organism=Mus musculus, GI31543964, Length=1401, Positives=55%, Blast Score=315
Organism=Mus musculus, GI31982492, Length=1416, Positives=53%, Blast Score=308
Organism=Mus musculus, GI12746418, Length=648, Positives=60%, Blast Score=281
Organism=Mus musculus, GI18485510, Length=982, Positives=56%, Blast Score=272
Organism=Mus musculus, GI17313266, Length=1216, Positives=57%, Blast Score=226
Organism=Mus musculus, GI33859536, Length=702, Positives=40%, Blast Score=76.6
Organism=Mus musculus, GI6681157, Length=614, Positives=42%, Blast Score=69.3
Organism=Mus musculus, GI51766689, Length=713, Positives=42%, Blast Score=68.6
Organism=Mus musculus, GI31981163, Length=660, Positives=40%, Blast Score=66.2
Organism=Drosophila melanogaster, GI24646066, Length=1487, Positives=52%, Blast Score=327
Organism=Drosophila melanogaster, GI24664230, Length=470, Positives=57%, Blast Score=279
Organism=Drosophila melanogaster, GI62472181, Length=468, Positives=57%, Blast Score=279
Organism=Drosophila melanogaster, GI24664226, Length=1058, Positives=57%, Blast Score=279
Organism=Drosophila melanogaster, GI21358123, Length=1579, Positives=55%, Blast Score=222
Organism=Drosophila melanogaster, GI24585582, Length=507, Positives=44%, Blast Score=75.9
Organism=Drosophila melanogaster, GI28574962, Length=818, Positives=41%, Blast Score=69.3
Organism=Drosophila melanogaster, GI24583281, Length=428, Positives=42%, Blast Score=65.9
Organism=Drosophila melanogaster, GI24583279, Length=459, Positives=42%, Blast Score=65.9
# Similarity:
Belongs to the helicase family. RecQ subfamily. Contains 1 helicase ATP-binding domain. Contains 1 helicase C-terminal domain. Contains 1 HRDC domain.
# EC_Number:
3.6.1.-
# No._of_Amino_Acids:
609 (Translated Protein)
608 (Mature Protein)
# Molecular_Weight:
68365 68233
# Theoretical_pI:
7.32
# Theoretical_pI (Mature):
7.32
# Sequence:
// MAQAEVLNLESGAKQVLQETFGYQQFRPGQEEIIDTVLSGRDCLVVMPTGGGKSLCYQIP
// ALLLNGLTVVVSPLISLMKDQVDQLQANGVAAACLNSTQTREQQLEVMTGCRTGQIRLLY
// IAPERLMLDNFLEHLAHWNPVLLAVDEAHCISQWGHDFRPEYAALGQLRQRFPTLPFMAL
// TATADDTTRQDIVRLLGLNDPLIQISSFDRPNIRYMLMEKFKPLDQLMRYVQEQRGKSGI
// IYCNSRAKVEDTAARLQSKGISAAAYHAGLENNVRADVQEKFQRDDLQIVVATVAFGMGI
// NKPNVRFVVHFDIPRNIESYYQETGRAGRDGLPAEAMLFYDPADMAWLRRCLEEKPQGQL
// QDIERHKLNAMGAFAEAQTCRRLVLLNYFGEGRQEPCGNCDICLDPPKQYDGSTDAQIAL
// STIGRVNQRFGMGYVVEVIRGANNQRIRDYGHDKLKVYGMGRDKSHEHWVSVIRQLIHLG
// LVTQNIAQHSALQLTEAARPVLRGESSLQLAVPRIVALKPKAMQKSFGGNYDRKLFAKLR
// KLRKSIADESNVPPYVVFNDATLIEMAEQMPITASEMLSVNGVGMRKLERFGKPFMALIR
// AHVDGDDEE
// /\
// AQAEVLNLESGAKQVLQETFGYQQFRPGQEEIIDTVLSGRDCLVVMPTGGGKSLCYQIPA
// LLLNGLTVVVSPLISLMKDQVDQLQANGVAAACLNSTQTREQQLEVMTGCRTGQIRLLYI
// APERLMLDNFLEHLAHWNPVLLAVDEAHCISQWGHDFRPEYAALGQLRQRFPTLPFMALT
// ATADDTTRQDIVRLLGLNDPLIQISSFDRPNIRYMLMEKFKPLDQLMRYVQEQRGKSGII
// YCNSRAKVEDTAARLQSKGISAAAYHAGLENNVRADVQEKFQRDDLQIVVATVAFGMGIN
// KPNVRFVVHFDIPRNIESYYQETGRAGRDGLPAEAMLFYDPADMAWLRRCLEEKPQGQLQ
// DIERHKLNAMGAFAEAQTCRRLVLLNYFGEGRQEPCGNCDICLDPPKQYDGSTDAQIALS
// TIGRVNQRFGMGYVVEVIRGANNQRIRDYGHDKLKVYGMGRDKSHEHWVSVIRQLIHLGL
// VTQNIAQHSALQLTEAARPVLRGESSLQLAVPRIVALKPKAMQKSFGGNYDRKLFAKLRK
// LRKSIADESNVPPYVVFNDATLIEMAEQMPITASEMLSVNGVGMRKLERFGKPFMALIRA
// HVDGDDEE
# PROSITE_Motif:
DEAH_ATP_HELICASE; PATTERN. PS00690; DEAH-box subfamily ATP-dependent helicases signature. [GSAH]-x-[LIVMF](3)-D-E-[ALIV]-H-[NECR]. PDOC00039; //
# Important_Sites:
Not Available
# Transmembrane:
Not Available
# Cys/Met_Content:
1.8 %Cys (Translated Protein)
3.4 %Met (Translated Protein)
5.3 %Cys+Met (Translated Protein)
1.8 %Cys (Mature Protein)
3.3 %Met (Mature Protein)
5.1 %Cys+Met (Mature Protein)
# Secondary_Structure:
>RECQ_ECOLI (Translated Protein)
AQAEVLNLESGAKQVLQETFGYQQFRPGQEEIIDTVLSGRDCLVVMPTGGGKSLCYQIPA
CCCCCCCCCHHHHHHHHHHCCCCCCCHHHHHHHHHHHCCCCEEEECCCCCHHHHHHHHHH
LLLNGLTVVVSPLISLMKDQVDQLQANGVAAACLNSTQTREQQLEVMTGCRTGQIRLLYI
HCCCCEEEEEECCHHHHHHHHHHHHHHCCEEEEEECCCCCHHHHHHHHHHHHCCCCEEEE
APERLMLDNFLEHLAHWNPVLLAVDEAHCISQWGHDFRPEYAALGQLRQRFPTLPFMALT
CCHHHHHHHHHCCCCHHCCEEEEEECHHHHCCCCCCHHHHHHHHHHHHHHCCCCCEEEEE
ATADDTTRQDIVRLLGLNDPLIQISSFDRPNIRYMLMEKFKPLDQLMRYVQEQRGKSGII
CCCCHHHHHHHHHHCCCCCEEEEECCCCCCEEEEECCCCHHHHHHHHHHHHHHCCCCEEE
YCNSRAKVEDTAARLQSKGISAAAYHAGLENNVRADVQEKFQRDDLQIVVATVAFGMGIN
EECCHHHHHHHHHHHHHCCCCEEEEECCCCHHHHHHHHHHHHCCCCCEEEEHHHHHHCCC
KPNVRFVVHFDIPRNIESYYQETGRAGRDGLPAEAMLFYDPADMAWLRRCLEEKPQGQLQ
CCCCCEEEEECCCCCHHHHHHHHHHCCCCCCCEEEEEEECHHHHHHHHHHHHHCCCHHHH
DIERHKLNAMGAFAEAQTCRRLVLLNYFGEGRQEPCGNCDICLDPPKQYDGSTDAQIALS
HHHHHHHHHHHHHHHHCCHHHHHHHHHCCCCCCCCCCCCCCCCCCCEEECCCHHHHHHHH
TIGRVNQRFGMGYVVEVIRGANNQRIRDYGHDKLKVYGMGRDKSHEHWVSVIRQLIHLGL
HHHHHCCCCCCCCCEEEECCCCCCCHHHCCCCCCEEECCCCCCCHHHHHHHHHHHHHHHH
VTQNIAQHSALQLTEAARPVLAESSLQLAVPRIVALKPKAMQKSFGGNYDRKLFAKLRKL
HHHHHHHCCCEEECCCCCHHCCCCCCCHHHHHCCCCCCCCCCCCCCCCCCHHHHHHHHHH
RKSIADESNVPPYVVFNDATLIEMAEQMPITASEMLSVNGVGMRKLERFGKPFMALIRAH
HHHHHHHHCCCCEEEECHHHHHHHHHHCCCCHHHHHCCCCCCHHHHHHHHHHHHHHHHHH
VDGDDEE
HCCCCCC
/\
>RECQ_ECOLI (Mature Protein)
QAEVLNLESGAKQVLQETFGYQQFRPGQEEIIDTVLSGRDCLVVMPTGGGKSLCYQIPAL
CCCCCCCCHHHHHHHHHHCCCCCCCHHHHHHHHHHHCCCCEEEECCCCCHHHHHHHHHHH
LLNGLTVVVSPLISLMKDQVDQLQANGVAAACLNSTQTREQQLEVMTGCRTGQIRLLYIA
CCCCEEEEEECCHHHHHHHHHHHHHHCCEEEEEECCCCCHHHHHHHHHHHHCCCCEEEEC
PERLMLDNFLEHLAHWNPVLLAVDEAHCISQWGHDFRPEYAALGQLRQRFPTLPFMALTA
CHHHHHHHHHCCCCHHCCEEEEEECHHHHCCCCCCHHHHHHHHHHHHHHCCCCCEEEEEC
TADDTTRQDIVRLLGLNDPLIQISSFDRPNIRYMLMEKFKPLDQLMRYVQEQRGKSGIIY
CCCHHHHHHHHHHCCCCCEEEEECCCCCCEEEEECCCCHHHHHHHHHHHHHHCCCCEEEE
CNSRAKVEDTAARLQSKGISAAAYHAGLENNVRADVQEKFQRDDLQIVVATVAFGMGINK
ECCHHHHHHHHHHHHHCCCCEEEEECCCCHHHHHHHHHHHHCCCCCEEEEHHHHHHCCCC
PNVRFVVHFDIPRNIESYYQETGRAGRDGLPAEAMLFYDPADMAWLRRCLEEKPQGQLQD
CCCCEEEEECCCCCHHHHHHHHHHCCCCCCCEEEEEEECHHHHHHHHHHHHHCCCHHHHH
IERHKLNAMGAFAEAQTCRRLVLLNYFGEGRQEPCGNCDICLDPPKQYDGSTDAQIALST
HHHHHHHHHHHHHHHCCHHHHHHHHHCCCCCCCCCCCCCCCCCCCEEECCCHHHHHHHHH
IGRVNQRFGMGYVVEVIRGANNQRIRDYGHDKLKVYGMGRDKSHEHWVSVIRQLIHLGLV
HHHHCCCCCCCCCEEEECCCCCCCHHHCCCCCCEEECCCCCCCHHHHHHHHHHHHHHHHH
TQNIAQHSALQLTEAARPVLAESSLQLAVPRIVALKPKAMQKSFGGNYDRKLFAKLRKLR
HHHHHHCCCEEECCCCCHHCCCCCCCHHHHHCCCCCCCCCCCCCCCCCCHHHHHHHHHHH
KSIADESNVPPYVVFNDATLIEMAEQMPITASEMLSVNGVGMRKLERFGKPFMALIRAHV
HHHHHHHCCCCEEEECHHHHHHHHHHCCCCHHHHHCCCCCCHHHHHHHHHHHHHHHHHHH
DGDDEE
CCCCCC
# PDB_Accession:
& Not Available
# Resolution:
Not Available
# Structure_CLASS:
Alpha Beta
# Quaternary_Structure:
Not Available
# Interacting_Partners:
Unknown
# Cofactors:
Not Available
# Metals_Ions:
Not Available
# Kcat_Value_[1/min]:
Not Available
# Specific_Activity_[micromol/min/mg]:
Not Available
# Km_Value_[mM]:
Not Available
# Substrates:
Not Available
# Products:
Not Available
# Specific_Reaction:
Not Available
# General_Reaction:
Not Available
# Inhibitor:
Not Available
# Priority:
6.5
# Status:
Not Available
# Availability:
Not Available
#END_ECARDFILE
#BEGIN_ECARDFILE
# Entry_ID:
CC3779A.2
# Accession_No.:
UA0003779
# Name:
DNA polymerase IV
# Alternate_Names:
Pol IV
# General_Function:
DNA/RNA polymerases
# COG_Function:
Replication, recombination and repair (code L)
# COG_ID:
COG0389 Nucleotidyltransferase/DNA polymerase involved in DNA repair (Evalue = 0.0)
# Specific_Function:
Poorly processive, error-prone DNA polymerase involved in untargeted mutagenesis. Copies undamaged DNA at stalled replication forks, which arise in vivo from mismatched or misaligned primer ends. These misaligned primers can be extended by polIV. Exhibits no 3'-5' exonuclease (proofreading) activity. Overexpression of polIV results in increased frameshift mutagenesis. It is required for stationary-phase adaptive mutation, which provides the bacterium with flexibility in dealing with environmental stress, enhancing long-term survival and evolutionary fitness. May be involved in translesional synthesis, in conjunction with the beta clamp from polIII.
# Riley_Gene_Function:
DNA polymerase IV, devoid of proofreading, damage-inducible protein P
# Riley_Cell_Function:
>>>
Information transfer
DNA related
DNA replication
||
>>>
Cell processes
SOS response
||
>>>
Location of gene products
Cytoplasm
# Gene_Ontology:
>>>
Function: Not Available
||
>>>
Process: physiological process
Process: metabolism
Process: macromolecule metabolism
Process: biopolymer metabolism
Process: DNA metabolism
Process: DNA repair
||
>>>
Process: cellular metabolism
Process: nucleobase, nucleoside, nucleotide and nucleic acid metabolism
Process: DNA metabolism
Process: DNA repair
||
>>>
Process: primary metabolism
Process: nucleobase, nucleoside, nucleotide and nucleic acid metabolism
Process: DNA metabolism
Process: DNA repair
||
>>>
Process: cellular physiological process
Process: cellular metabolism
Process: nucleobase, nucleoside, nucleotide and nucleic acid metabolism
Process: DNA metabolism
Process: DNA repair
||
>>>
Process: cellular process
Process: cellular physiological process
Process: cellular metabolism
Process: nucleobase, nucleoside, nucleotide and nucleic acid metabolism
Process: DNA metabolism
Process: DNA repair
||
>>>
Process: response to stimulus
Process: response to stress
Process: response to DNA damage stimulus
Process: DNA repair
||
>>>
Process: response to endogenous stimulus
Process: response to DNA damage stimulus
Process: DNA repair
||
>>>
Component: Not Available
# Location:
Cytoplasm
# Blattner_Number:
b0231
# Gene_Sequence:
ATGCGTAAAATCATTCATGTGGATATGGACTGCTTTTTCGCCGCAGTGGAGATGCGCGACAATCCCGCCC
TGCGCGATATCCCTATTGCTATTGGCGGCAGCCGCGAACGTCGGGGGGTGATCAGCACCGCCAATTATCC
CGCGCGTAAATTTGGCGTACGTAGCGCTATGCCGACAGGGATGGCGCTCAAATTATGCCCACATCTCACC
TTGCTTCCGGGGCGCTTTGACGCCTACAAAGAAGCCTCAAATCATATCCGTGAAATCTTCTCGCGCTACA
CCTCGCGCATTGAACCGTTGTCACTGGATGAGGCTTATCTCGATGTCACCGATAGCGTCCATTGCCACGG
TTCTGCGACCCTCATCGCCCAGGAAATCCGCCAGACAATCTTCAACGAGCTGCAACTGACGGCGTCTGCG
GGCGTGGCACCAGTAAAGTTTCTCGCCAAAATCGCCTCCGACATGAATAAACCCAACGGCCAGTTTGTGA
TTACGCCGGCAGAAGTTCCGGCATTTTTACAAACCTTACCGCTGGCAAAAATCCCCGGCGTCGGCAAAGT
CTCAGCGGCAAAACTGGAAGCGATGGGGCTGCGGACCTGCGGTGATGTACAAAAGTGTGATCTGGTGATG
CTGCTTAAACGCTTTGGCAAATTTGGCCGCATTTTGTGGGAGCGTAGTCAGGGGATTGACGAACGCGATG
TTAACAGCGAACGGTTGCGAAAATCCGTCGGCGTGGAACGCACGATGGCGGAAGATATTCATCACTGGTC
TGAATGTGAAGCGATTATCGAGCGGCTGTATCCGGAACTTGAACGCCGTCTGGCAAAGGTAAAACCTGAT
TTACTGATTGCTCGCCAGGGGGTGAAATTAAAGTTCGACGATTTTCAGCAAACCACCCAGGAGCACGTCT
GGCCGCGGCTGAATAAAGCTGATCTAATCGCCACCGCGCGTAAAACCTGGGATGAACGCCGCGGCGGGCG
CGGTGTGCGTCTGGTGGGGCTGCATGTGACGTTGCTTGACCCGCAAATGGAAAGACAACTGGTGCTGGGA
TTATGA
# Upstream_100_bases:
CAGCAGGTGCTTTCGCAGCGAACGCGTTAAATGCTGAATCTTTACGCATTTCTCAAACCCTGAAATCACT
GTATACTTTACCAGTGTTGAGAGGTGAGCA
# Blattner_No_Ontology:
Hypothetical, unclassified, unknown
# Gene_Position:
250898-251953 (Clockwise)
# Centisome_Position:
5.408
# Gene_Name:
dinB or dinP
# GC_Content:
54.17%
# Metabolic_Importance:
Non_Essential
# Preceding_Gene:
mbhA
# Following_Gene:
yafN
# Operon_Status:
No
# Operon_Components:
None
# Paralogues:
b1184 (umuC) 26;
# Copy Number:
Unknown
# RNA_Copy_No.:
Log phase (2max): 0.36
Stationary phase (2max): 0.13
Ref: Nature Biotech., 18, 1262-68, Dec. 2000 (PMID=11101804)
# Genbank_ID_(DNA):
G1786425
# Genbank_ID_(Protein):
AAC73335.1
# SWISS_PROT_(AC_&_ID):
$ DPO4_ECOLI (Q47155)
# 2D_Gel_Image:
Not Available
# Other_Databases:
- ECOCYC: EG13141
- EcoGene: EG13141
- EMBL: D38582
- InterPro: IPR001126
- Pfam: PF00817
- PROSITE: PS50173
# Pfam_Domain/Function:
PF00817 impB/mucB/samB family
# Homologues:
Organism=Homo sapiens, GI7705344, Length=870, Positives=47%, Blast Score=154
Organism=Homo sapiens, GI7706681, Length=1251, Positives=49%, Blast Score=148
Organism=Homo sapiens, GI6005848, Length=715, Positives=51%, Blast Score=129
Organism=Homo sapiens, GI5729982, Length=713, Positives=44%, Blast Score=114
Organism=Caenorhabditis elegans, GI17553100, Length=518, Positives=52%, Blast Score=159
Organism=Caenorhabditis elegans, GI17537959, Length=1027, Positives=49%, Blast Score=116
Organism=Caenorhabditis elegans, GI17553546, Length=603, Positives=54%, Blast Score=67.8
Organism=Saccharomyces cerevisiae, GI6324921, Length=985, Positives=43%, Blast Score=73.6
Organism=Mus musculus, GI40254551, Length=1249, Positives=49%, Blast Score=152
Organism=Mus musculus, GI6753636, Length=852, Positives=46%, Blast Score=152
Organism=Mus musculus, GI6755274, Length=717, Positives=49%, Blast Score=137
Organism=Mus musculus, GI17105328, Length=694, Positives=41%, Blast Score=106
Organism=Drosophila melanogaster, GI19923006, Length=995, Positives=51%, Blast Score=166
Organism=Drosophila melanogaster, GI24644984, Length=737, Positives=45%, Blast Score=115
Organism=Drosophila melanogaster, GI21355641, Length=737, Positives=45%, Blast Score=115
Organism=Drosophila melanogaster, GI24668444, Length=885, Positives=48%, Blast Score=73.6
# Similarity:
Belongs to the DNA polymerase type-Y family. Contains 1 umuC domain.
# EC_Number:
2.7.7.7
# No._of_Amino_Acids:
351 (Translated Protein)
351 (Mature Protein)
# Molecular_Weight:
39517 39517
# Theoretical_pI:
9.62
# Theoretical_pI (Mature):
9.62
# Sequence:
// MRKIIHVDMDCFFAAVEMRDNPALRDIPIAIGGSRERRGVISTANYPARKFGVRSAMPTG
// MALKLCPHLTLLPGRFDAYKEASNHIREIFSRYTSRIEPLSLDEAYLDVTDSVHCHGSAT
// LIAQEIRQTIFNELQLTASAGVAPVKFLAKIASDMNKPNGQFVITPAEVPAFLQTLPLAK
// IPGVGKVSAAKLEAMGLRTCGDVQKCDLVMLLKRFGKFGRILWERSQGIDERDVNSERLR
// KSVGVERTMAEDIHHWSECEAIIERLYPELERRLAKVKPDLLIARQGVKLKFDDFQQTTQ
// EHVWPRLNKADLIATARKTWDERRGGRGVRLVGLHVTLLDPQMERQLVLGL
// /\
// MRKIIHVDMDCFFAAVEMRDNPALRDIPIAIGGSRERRGVISTANYPARKFGVRSAMPTG
// MALKLCPHLTLLPGRFDAYKEASNHIREIFSRYTSRIEPLSLDEAYLDVTDSVHCHGSAT
// LIAQEIRQTIFNELQLTASAGVAPVKFLAKIASDMNKPNGQFVITPAEVPAFLQTLPLAK
// IPGVGKVSAAKLEAMGLRTCGDVQKCDLVMLLKRFGKFGRILWERSQGIDERDVNSERLR
// KSVGVERTMAEDIHHWSECEAIIERLYPELERRLAKVKPDLLIARQGVKLKFDDFQQTTQ
// EHVWPRLNKADLIATARKTWDERRGGRGVRLVGLHVTLLDPQMERQLVLGL
# PROSITE_Motif:
Not Available
# Important_Sites:
Not Available
# Transmembrane:
Not Available
# Cys/Met_Content:
1.7 %Cys (Translated Protein)
2.8 %Met (Translated Protein)
4.6 %Cys+Met (Translated Protein)
1.7 %Cys (Mature Protein)
2.8 %Met (Mature Protein)
4.6 %Cys+Met (Mature Protein)
# Secondary_Structure_(PDB):
IVLFVDFDYFYAQVEEVLNPSLKGKPVVVCVFSGRFEDSGAVATANYEARK
CEEEEEEECHHHHHHHHHCCCCCCEEEEEEEEECCCCCCCEEEEECHHHHH
FGVKAGIPIVEAKKILPNAVYLPRKEVYQQVSSRINLLREYSEKIEIASID
CCCCCCCCHHHHHHHCCCEEEECCHHHHHHHHHHCCHHHHHCCEEECCCCE
EAYLDISDKVRDYREAYNLGLEIKNKILEKEKITVTVGISKNKVFAKIAAD
EEEEECCCCCCCHHHHHHHHHHHHHHHHHHCCEEEEEEEECCHHHHHHHHC
AKPNGIKVIDDEEVKRLIRELDIADVPGIGNITAEKLKKLGINKLVDTLSI
CCCCEEEEECHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHCCCCHHHHHCC
EFDKLKGIGEAKAKYLISLARDEYNEPIRTRVRKSIGRIVTKRNSRNLEEI
CHHHHHCCCHHHHHHHHHHHHCCCCCCCCCCCCCEEEEEECCCCCCHHHHH
KPYLFRAIEESYYKLDKRIPKAIHVVAVTEDLDIVSRGRTFPHGISKETAY
HHHHHHHHHHHHHHHCCCEEEEEEEEEEECCCCEEEEEEEECCEEEHHHHH
SESVKLLQKILEEDERKIRRIGVRFSKFI
HHHHHHHHHHHHHCCEEEEEEEEEEECCC
# PDB_Accession:
& Model Based on 1JX4 (1-284)
# Resolution:
Not Available
# Structure_CLASS:
Alpha Beta
# Quaternary_Structure:
Not Available
# Interacting_Partners:
Unknown
# Cofactors:
Binds 2 magnesium ions per subunit (By similarity).
# Metals_Ions:
--Mg2+ --Zn2+
# Kcat_Value_[1/min]:
Not Available
# Specific_Activity_[micromol/min/mg]:
Not Available
# Km_Value_[mM]:
Not Available
# Substrates:
Not Available
# Products:
Not Available
# Specific_Reaction:
Not Available
# General_Reaction:
Not Available
# Inhibitor:
--1,10-phenanthroline --ara-CTP --benzyloxycarbonyl-Leu-Leu-al --dansyl-Leu-Leu-Leu-CH2Cl --EDTA --halenaquinol sulfate --lysophosphatidic acid --more --N-ethylmaleimide --oosporein --RecA --SH-blocking agents
# Priority:
1.0
# Status:
Selected, Cloned, Expressed, Soluble, Purified, Crystallized
# Availability:
RSGI
#END_ECARDFILE
#BEGIN_ECARDFILE
# Entry_ID:
CC3027A.1
# Accession_No.:
UA0003027
# Name:
Putative Rz endopeptidase from lambdoid prophage DLP12
# Alternate_Names:
Not Available
# General_Function:
Cellular processes
# COG_Function:
Not Available
# COG_ID:
Not Available
# Specific_Function:
Not Available
# Riley_Gene_Function:
DLP12 prophage; bacteriophage lambda endopeptidase homolog
# Riley_Cell_Function:
>>>
extrachromosomal
Prophage genes and phage related functions
# Gene_Ontology:
>>>
Function: Not Available
||
>>>
Process: physiological process
Process: death
Process: cell death
Process: cytolysis
||
>>>
Process: cellular physiological process
Process: cell death
Process: cytolysis
||
>>>
Process: cellular process
Process: cellular physiological process
Process: cell death
Process: cytolysis
||
>>>
Component: Not Available
# Location:
Cytoplasm
# Blattner_Number:
b0556
# Gene_Sequence:
GTGAGCAGAGTAACCGCGATTATATCCGCTCTGATTATCTGCATCATCGTCAGCCTGTCATGGGCGGTCA
ATCATTACCGTGATAACGCAATCGCCTACAAAGTCCAGCGCGACAAAAATGCCAGAGAACTGAAGCTAGC
GAACGCGGCAATTACTGACATGCAGATGCGTCAGCGTGATGTTGCTGCGCTCGATGCAAAATACACGAAG
GAGTTAGCTGATGCGAAAGCTGAAAATGATGCTCTGCGTGATGATGTTGCCGCTGGTCGTCGTCGGTTGC
ACATCAAAGCAGTCTGTCAGTCAGTGCGTGAAGCCACCACGGCCTCCGGCGTGGATAATGCAGCCTCCCC
CCGACTGGCAGACACCGCTGAACGGGATTATTTCACCCTCAGAGAGAGGCTGATCACTATGCAAAAACAA
CTGGAAGGAACCCAGAAGTATATTAATGAGCAGTGCAGATAG
# Upstream_100_bases:
GTGATCAGCTGCGTCGCTGGACATACGCTGGCGGTAAGCAATGGAAAGGCCTGATGACTCGTCGTGAGAT
TGAGCGTGAAGTCTGTTTGTGGGGGCAACA
# Blattner_No_Ontology:
Hypothetical, unclassified, unknown
# Gene_Position:
577330-577791 (Clockwise)
# Centisome_Position:
12.443
# Gene_Name:
rzpD
# GC_Content:
51.30%
# Metabolic_Importance:
Unknown
# Preceding_Gene:
ybcS
# Following_Gene:
rzoD
# Operon_Status:
No
# Operon_Components:
None
# Paralogues:
b1362 (rzpR) 91;
# Copy Number:
Unknown
# RNA_Copy_No.:
Log phase (2max): 0.14
Stationary phase (2max): 0.16
Ref: Nature Biotech., 18, 1262-68, Dec. 2000 (PMID=11101804)
# Genbank_ID_(DNA):
G1786769
# Genbank_ID_(Protein):
AAC73657.1
# SWISS_PROT_(AC_&_ID):
$ RZPD_ECOLI (P75719)
# 2D_Gel_Image:
Not Available
# Other_Databases:
- ECOCYC: EG13636
- EcoGene: EG13636
- EMBL: U82598
- InterPro: IPR004929
- Pfam: PF03245
- PIR: B64788
# Pfam_Domain/Function:
PF03245 Bacteriophage lysis protein;
# Homologues:
Not Available
# Similarity:
Not Available
# EC_Number:
3.4.-.-
# No._of_Amino_Acids:
153 (Translated Protein)
131 (Mature Protein)
# Molecular_Weight:
17226 14883
# Theoretical_pI:
9.48
# Theoretical_pI (Mature):
9.45
# Sequence:
// MSRVTAIISALIICIIVSLSWAVNHYRDNAIAYKVQRDKNARELKLANAAITDMQMRQRD
// VAALDAKYTKELADAKAENDALRDDVAAGRRRLHIKAVCQSVREATTASGVDNAASPRLA
// DTAERDYFTLRERLITMQKQLEGTQKYINEQCR
// /\
// VNHYRDNAIAYKVQRDKNARELKLANAAITDMQMRQRDVAALDAKYTKELADAKAENDAL
// RDDVAAGRRRLHIKAVCQSVREATTASGVDNAASPRLADTAERDYFTLRERLITMQKQLE
// GTQKYINEQCR
# PROSITE_Motif:
Not Available
# Important_Sites:
Not Available
# Transmembrane:
Not Available
# Cys/Met_Content:
2.0 %Cys (Translated Protein)
2.6 %Met (Translated Protein)
4.6 %Cys+Met (Translated Protein)
1.5 %Cys (Mature Protein)
2.3 %Met (Mature Protein)
3.8 %Cys+Met (Mature Protein)
# Secondary_Structure:
>RZPD_ECOLI (Translated Protein)
MSRVTAIISALIICIIVSLSWAVNHYRDNAIAYKVQRDKNARELKLANAAITDMQMRQRD
CCHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
VAALDAKYTKELADAKAENDALRDDVAAGRRRLHIKAVCQSVREATTASGVDNAASPRLA
HHHHHHHHHHHHHHHHHHHHHHHHHHHCCCEEEEEEEECCCCCCCCCCCCCCCCCCCEEC
DTAERDYFTLRERLITMQKQLEGTQKYINEQCR
CCCCCCEEEHHHHHHHHHHHHHHHHHHHHHHCC
/\
>RZPD_ECOLI (Mature Protein)
SRVTAIISALIICIIVSLSWAVNHYRDNAIAYKVQRDKNARELKLANAAITDMQMRQRDV
CHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
AALDAKYTKELADAKAENDALRDDVAAGRRRLHIKAVCQSVREATTASGVDNAASPRLAD
HHHHHHHHHHHHHHHHHHHHHHHHHHCCCEEEEEEEECCCCCCCCCCCCCCCCCCCEECC
TAERDYFTLRERLITMQKQLEGTQKYINEQCR
CCCCCEEEHHHHHHHHHHHHHHHHHHHHHHCC
# PDB_Accession:
& Not Available
# Resolution:
Not Available
# Structure_CLASS:
Mainly Alpha
# Quaternary_Structure:
Not Available
# Interacting_Partners:
Not Available
# Cofactors:
Not Available
# Metals_Ions:
Not Available
# Kcat_Value_[1/min]:
Not Available
# Specific_Activity_[micromol/min/mg]:
Not Available
# Km_Value_[mM]:
Not Available
# Substrates:
Not Available
# Products:
Not Available
# Specific_Reaction:
Not Available
# General_Reaction:
Not Available
# Inhibitor:
Not Available
# Priority:
8.6
# Status:
Selected, Cloned
# Availability:
Montreal-Kingston Bacterial Structural Genomics Initiative
#END_ECARDFILE
#BEGIN_ECARDFILE
# Entry_ID:
CC2831A.1
# Accession_No.:
UA0002831
# Name:
Hypothetical protein yrhA
# Alternate_Names:
Not Available
# General_Function:
Not Available
# COG_Function:
Amino acid transport and metabolism (code E)
# COG_ID:
COG0031 Cysteine synthase (Evalue = 4e-75)
# Specific_Function:
Not Available
# Riley_Gene_Function:
conserved hypothetical protein
# Riley_Cell_Function:
>>>
Not Available
# Gene_Ontology:
>>>
Function: Not Available
||
>>>
Process: Not Available
||
>>>
Component: Not Available
# Location:
Cytoplasm
# Blattner_Number:
b3443
# Gene_Sequence:
ATGACTAAAACCCAAATAAATAAATTAATAAAAATGATGAATGATTTAGACTATCCATTTGAAGCACCGC
TCAAGGAATCATTTATTGAAAGTATAATCCAAATAGAATTTAATTCTAATTCAACTAATTGCCTGGAGAA
GTTATGTAATGAAGTTAGTATTCTTTTTAAGAATCAACCTGATTATCTTACTTTTTTAAGAGCAATGGAT
GGATTCGAAGTTAATGGATTACGATTATTTAGCCTCTCGATTCCAGAACCTTCAGTTAAAAACCTTTTTG
CCGTAAATGAATTTTATAGAAATAATGATGATTTCATAAACCCTGATCTACAAGAACGGTTAGTGATCGG
GGATTATAGCATTTCAATATTTACTTATGACATTAAAGGTGATGCTGCCAACTTACTGATTTAG
# Upstream_100_bases:
CTAAGGGAATATTAGTAGGTGAAAGCAAAATCACTCCCTGGGCCATTCCATCTGGCTCAATTTATCCTCC
CATGAAAAATATTATGGACCACACAAAATG
# Blattner_No_Ontology:
Hypothetical, unclassified, unknown
# Gene_Position:
3581064-3581477 (Clockwise)
# Centisome_Position:
77.184
# Gene_Name:
yrhA
# GC_Content:
29.71%
# Metabolic_Importance:
Unknown
# Preceding_Gene:
yhhZ
# Following_Gene:
yrhD
# Operon_Status:
Yes
# Operon_Components:
yhhZ_yrhA_insA6 Ref: RegulonDB http://kinich.cifn.unam.mx:8850/db/regulondb_cgi.query_simple?v_organism=ECK12&v_table=3&v_name=yrhA
# Paralogues:
None
# Copy Number:
Unknown
# RNA_Copy_No.:
Log phase (2max): 976.22
Stationary phase (2max): 0.8
Ref: Nature Biotech., 18, 1262-68, Dec. 2000 (PMID=11101804)
# Genbank_ID_(DNA):
G1789851
# Genbank_ID_(Protein):
AAC76468.1
# SWISS_PROT_(AC_&_ID):
$ YRHA_ECOLI (P46856)
# 2D_Gel_Image:
Not Available
# Other_Databases:
- ECOCYC: EG12947
- EcoGene: EG12947
- EMBL: U18997
- PIR: F65140
# Pfam_Domain/Function:
None
# Homologues:
Not Available
# Similarity:
Not Available
# EC_Number:
Not Available
# No._of_Amino_Acids:
137 (Translated Protein)
136 (Mature Protein)
# Molecular_Weight:
15819 15688
# Theoretical_pI:
4.20
# Theoretical_pI (Mature):
4.20
# Sequence:
// MTKTQINKLIKMMNDLDYPFEAPLKESFIESIIQIEFNSNSTNCLEKLCNEVSILFKNQP
// DYLTFLRAMDGFEVNGLRLFSLSIPEPSVKNLFAVNEFYRNNDDFINPDLQERLVIGDYS
// ISIFTYDIKGDAANLLI
// /\
// TKTQINKLIKMMNDLDYPFEAPLKESFIESIIQIEFNSNSTNCLEKLCNEVSILFKNQPD
// YLTFLRAMDGFEVNGLRLFSLSIPEPSVKNLFAVNEFYRNNDDFINPDLQERLVIGDYSI
// SIFTYDIKGDAANLLI
# PROSITE_Motif:
Not Available
# Important_Sites:
Not Available
# Transmembrane:
Not Available
# Cys/Met_Content:
1.5 %Cys (Translated Protein)
2.9 %Met (Translated Protein)
4.4 %Cys+Met (Translated Protein)
1.5 %Cys (Mature Protein)
2.2 %Met (Mature Protein)
3.7 %Cys+Met (Mature Protein)
# Secondary_Structure:
>YRHA_ECOLI (Translated Protein)
MMTKTQINKLIKMMNDLDYPFEAPLKESFIESIIQIEFNSNSTNCLEKLCNEVSILFKNQ
CCCHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHEEEEECCCCHHHHHHHHHHHHHHHCCC
PDYLTFLRAMDGFEVNGLRLFSLSIPEPSVKNLFAVNEFYRNNDDFINPDLQERLVIGDY
CCHHHHHHCCCCCCCCCEEEEEEECCCCHHHHHHHHHHHHCCCCCCCCCCHHCCEEEEEE
SISIFTYDIKGDAANLLI
EEEEEEEEECCCCCCCCC
/\
>YRHA_ECOLI (Mature Protein)
MTKTQINKLIKMMNDLDYPFEAPLKESFIESIIQIEFNSNSTNCLEKLCNEVSILFKNQP
CCHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHEEEEECCCCHHHHHHHHHHHHHHHCCCC
DYLTFLRAMDGFEVNGLRLFSLSIPEPSVKNLFAVNEFYRNNDDFINPDLQERLVIGDYS
CHHHHHHCCCCCCCCCEEEEEEECCCCHHHHHHHHHHHHCCCCCCCCCCHHCCEEEEEEE
ISIFTYDIKGDAANLLI
EEEEEEEECCCCCCCCC
# PDB_Accession:
& Not Available
# Resolution:
Not Available
# Structure_CLASS:
Alpha Beta
# Quaternary_Structure:
Not Available
# Interacting_Partners:
Not Available
# Cofactors:
Not Available
# Metals_Ions:
Not Available
# Kcat_Value_[1/min]:
Not Available
# Specific_Activity_[micromol/min/mg]:
Not Available
# Km_Value_[mM]:
Not Available
# Substrates:
Not Available
# Products:
Not Available
# Specific_Reaction:
Not Available
# General_Reaction:
Not Available
# Inhibitor:
Not Available
# Priority:
9.4
# Status:
Selected, Cloned, Expressed
# Availability:
Northeast Structural Genomics Consortium
#END_ECARDFILE
#BEGIN_ECARDFILE
# Entry_ID:
CC1634A.1
# Accession_No.:
UA0001634
# Name:
Protein pnuC
# Alternate_Names:
Not Available
# General_Function:
Not Available
# COG_Function:
Coenzyme transport and metabolism (code H)
# COG_ID:
COG3201 Nicotinamide mononucleotide transporter (Evalue = 1e-134)
# Specific_Function:
Required for NMN transport across the cytoplasmic membrane.
# Riley_Gene_Function:
nucleoside/purine/pyrimidine transport protein (NMN family)
# Riley_Cell_Function:
>>>
Metabolism
Central intermediary metabolism
Nucleotide and nucleoside conversions
||
>>>
Transport
Transporters of Unknown Classification
Recognized transporters of unknown biochemical mechanism
The Nicotinamide Mononucleotide (NMN) Uptake Permease (PnuC) Family
||
>>>
Transport
substrate
nicotinamide mononucleotide
||
>>>
Cell structure
Membrane
||
>>>
Location of gene products
Inner membrane
# Gene_Ontology:
>>>
Function: Not Available
||
>>>
Process: physiological process
Process: cellular physiological process
Process: transport
||
>>>
Process: localization
Process: establishment of localization
Process: transport
||
>>>
Process: cellular process
Process: cellular physiological process
Process: transport
||
>>>
Component: cell
Component: membrane
# Location:
Integral Membrane Protein
# Blattner_Number:
b0751
# Gene_Sequence:
ATGGATTTTTTTAGTGTGCAGAATATCCTGGTACATATACCAATAGGGGCAGGCGGTTATGATCTCTCAT
GGATCGAAGCGGTAGGCACGATCGCCGGGTTGCTGTGTATTGGCCTTGCCAGTCTGGAGAAGATCAGCAA
CTACTTCTTTGGCCTGATCAACGTCACCTTGTTTGGCATTATTTTCTTTCAGATTCAGCTGTATGCCAGC
CTGCTATTACAGGTGTTTTTCTTTGCCGCGAATATTTACGGTTGGTATGCGTGGTCGCGACAAACCAGTC
AGAACGAGGCGGAGTTGAAAATTCGCTGGTTGCCATTGCCGAAGGCACTCAGCTGGTTGGCGGTTTGCGT
TGTTTCGATTGGTCTGATGACGGTATTTATCAATCCGGTGTTTGCATTTTTGACCCGCGTGGCAGTCATG
ATCATGCAAGCATTAGGATTACAGGTTGTGATGCCTGAACTGCAACCGGACGCTTTCCCGTTCTGGGATT
CATGCATGATGGTGTTATCTATCGTGGCAATGATTCTGATGACGCGTAAGTATGTGGAAAACTGGCTGTT
GTGGGTGATTATTAACGTGATTAGCGTCGTTATTTTTGCACTTCAGGGCGTTTACGCCATGTCTCTGGAG
TACATCATCCTGACCTTTATTGCGCTCAACGGCAGCCGGATGTGGATCAACAGCGCACGTGAAAGAGGCT
CACGCGCGCTGTCCCATTAA
# Upstream_100_bases:
CGAGAGAGGGCGCTGGTGCCGCTCAATCGTATGCTGGATTTTGCGGCTACACTACGTGGATAACGAATAA
TAAGGCGTAACGTTACGCTTTGGGGGAAAG
# Blattner_No_Ontology:
Transport and binding proteins
# Gene_Position:
782389-783108 (Clockwise)
# Centisome_Position:
16.863
# Gene_Name:
pnuC
# GC_Content:
48.19%
# Metabolic_Importance:
Non_Essential
# Preceding_Gene:
nadA
# Following_Gene:
zitB
# Operon_Status:
No
# Operon_Components:
None
# Paralogues:
None
# Copy Number:
Unknown
# RNA_Copy_No.:
Log phase (2max): 0.1
Stationary phase (2max): 0.08
Ref: Nature Biotech., 18, 1262-68, Dec. 2000 (PMID=11101804)
# Genbank_ID_(DNA):
G1786965
# Genbank_ID_(Protein):
AAC73838.1
# SWISS_PROT_(AC_&_ID):
$ PNUC_ECOLI (P0AFK2)
# 2D_Gel_Image:
Not Available
# Other_Databases:
- ECOCYC: EG11700
- EcoGene: EG11700
- EMBL: AP009048
- InterPro: IPR006419
- Pfam: PF04973
- PIR: G64810
# Pfam_Domain/Function:
PF04973 Nicotinamide mononucleotide transporter;
# Homologues:
Not Available
# Similarity:
Not Available
# EC_Number:
Not Available
# No._of_Amino_Acids:
239 (Translated Protein)
239 (Mature Protein)
# Molecular_Weight:
26997 26997
# Theoretical_pI:
7.33
# Theoretical_pI (Mature):
7.33
# Sequence:
// MDFFSVQNILVHIPIGAGGYDLSWIEAVGTIAGLLCIGLASLEKISNYFFGLINVTLFGI
// IFFQIQLYASLLLQVFFFAANIYGWYAWSRQTSQNEAELKIRWLPLPKALSWLAVCVVSI
// GLMTVFINPVFAFLTRVAVMIMQALGLQVVMPELQPDAFPFWDSCMMVLSIVAMILMTRK
// YVENWLLWVIINVISVVIFALQGVYAMSLEYIILTFIALNGSRMWINSARERGSRALSH
// /\
// MDFFSVQNILVHIPIGAGGYDLSWIEAVGTIAGLLCIGLASLEKISNYFFGLINVTLFGI
// IFFQIQLYASLLLQVFFFAANIYGWYAWSRQTSQNEAELKIRWLPLPKALSWLAVCVVSI
// GLMTVFINPVFAFLTRVAVMIMQALGLQVVMPELQPDAFPFWDSCMMVLSIVAMILMTRK
// YVENWLLWVIINVISVVIFALQGVYAMSLEYIILTFIALNGSRMWINSARERGSRALSH
# PROSITE_Motif:
Not Available
# Important_Sites:
Not Available
# Transmembrane:
Transmembrane 22 42 Potential
Transmembrane 49 68 Potential
Transmembrane 72 89 Potential
Transmembrane 110 127 Potential
Transmembrane 158 177 Potential
Transmembrane 184 206 Potential
# Cys/Met_Content:
1.3 %Cys (Translated Protein)
4.6 %Met (Translated Protein)
5.9 %Cys+Met (Translated Protein)
1.3 %Cys (Mature Protein)
4.6 %Met (Mature Protein)
5.9 %Cys+Met (Mature Protein)
# Secondary_Structure:
>PNUC_ECOLI (Translated Protein)
MDFFSVQNILVHIPIGAGGYDLSWIEAVGTIAGLLCIGLASLEKISNYFFGLINVTLFGI
CCCCEECCEEEEEECCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHH
IIFFQIQLYASLLLQVFFFAANIYGWYAWSRQTSQNEAELKIRWLPLPKALSWLAVCVVS
HHHHHHHHHCCCHHHHHHHHHHHHEEEEECCCCCCCCCCCCCCHHHHHHHHHHHHHHHHH
SIGLMTVFINPVFAFLTRVAVMIMQALGLQVVMPELQPDAFPFWDSCMMVLSIVAMILMT
HHHHCCCCHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHC
TRKYVENWLLWVIINVISVVIFALQGVYAMSLEYIILTFIALNGSRMWINSARERGSRAL
CCCCCCCHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHCCCHHHHCCCCC
LSH
CCC
/\
>PNUC_ECOLI (Mature Protein)
DFFSVQNILVHIPIGAGGYDLSWIEAVGTIAGLLCIGLASLEKISNYFFGLINVTLFGII
CCCEECCEEEEEECCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHH
IFFQIQLYASLLLQVFFFAANIYGWYAWSRQTSQNEAELKIRWLPLPKALSWLAVCVVSI
HHHHHHHHCCCHHHHHHHHHHHHEEEEECCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHH
IGLMTVFINPVFAFLTRVAVMIMQALGLQVVMPELQPDAFPFWDSCMMVLSIVAMILMTR
HHHCCCCHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHCC
RKYVENWLLWVIINVISVVIFALQGVYAMSLEYIILTFIALNGSRMWINSARERGSRALS
CCCCCCHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHCCCHHHHCCCCCC
SH
CC
# PDB_Accession:
& Not Available
# Resolution:
Not Available
# Structure_CLASS:
Mainly Alpha
# Quaternary_Structure:
Not Available
# Interacting_Partners:
Unknown
# Cofactors:
Not Available
# Metals_Ions:
Not Available
# Kcat_Value_[1/min]:
Not Available
# Specific_Activity_[micromol/min/mg]:
Not Available
# Km_Value_[mM]:
Not Available
# Substrates:
nicotinamide nucleotide [Periplasm]
# Products:
nicotinamide nucleotide [Cytoplasm]
# Specific_Reaction:
nicotinamide nucleotide [Periplasm] = nicotinamide nucleotide [Cytoplasm]
# General_Reaction:
Not Available
# Inhibitor:
Not Available
# Priority:
3.1
# Status:
Selected, Work Stopped
# Availability:
Montreal-Kingston Bacterial Structural Genomics Initiative
#END_ECARDFILE
#BEGIN_ECARDFILE
# Entry_ID:
CC2164A.1
# Accession_No.:
UA0002164
# Name:
Cytoplasmic trehalase
# Alternate_Names:
Alpha,alpha-trehalase; Alpha,alpha-trehalose glucohydrolase
# General_Function:
Central intermediary metabolism
# COG_Function:
Carbohydrate transport and metabolism (code G)
# COG_ID:
COG1626 Neutral trehalase (Evalue = 0.0)
# Specific_Function:
Hydrolyzes trehalose to glucose. Could be involved, in cells returning to low osmolarity conditions, in the utilization of the accumulated cytoplasmic trehalose, which was synthesized in response to high osmolarity.
# Riley_Gene_Function:
trehalase, cytoplasmic
# Riley_Cell_Function:
>>>
Metabolism
Carbon compound utilization
Carbohydrates/Carbon compounds
Trehalose degradation, low osmolarity+
||
>>>
Location of gene products
Cytoplasm
# Gene_Ontology:
>>>
Function: catalytic activity
Function: hydrolase activity
Function: hydrolase activity, acting on glycosyl bonds
Function: hydrolase activity, hydrolyzing O-glycosyl compounds
Function: trehalase activity
Function: alpha,alpha-trehalase activity
||
>>>
Process: physiological process
Process: metabolism
Process: macromolecule metabolism
Process: carbohydrate metabolism
Process: cellular carbohydrate metabolism
Process: disaccharide metabolism
Process: trehalose metabolism
||
>>>
Process: cellular metabolism
Process: generation of precursor metabolites and energy
Process: energy derivation by oxidation of organic compounds
Process: energy reserve metabolism
Process: trehalose metabolism
||
>>>
Process: primary metabolism
Process: carbohydrate metabolism
Process: cellular carbohydrate metabolism
Process: disaccharide metabolism
Process: trehalose metabolism
||
>>>
Process: cellular physiological process
Process: cellular metabolism
Process: generation of precursor metabolites and energy
Process: energy derivation by oxidation of organic compounds
Process: energy reserve metabolism
Process: trehalose metabolism
||
>>>
Process: cellular process
Process: cellular physiological process
Process: cellular metabolism
Process: generation of precursor metabolites and energy
Process: energy derivation by oxidation of organic compounds
Process: energy reserve metabolism
Process: trehalose metabolism
||
>>>
Component: Not Available
# Location:
Cytoplasm
# Blattner_Number:
b3519
# Gene_Sequence:
ATGCTCAATCAGAAAATTCAAAACCCTAATCCAGACGAACTGATGATCGAAGTCGATCTCTGCTATGAGC
TGGACCCGTATGAATTAAAACTGGATGAGATGATCGAGGCAGAACCGGAACCCGAGATGATTGAAGGGCT
GCCTGCCTCTGATGCGCTGACGCCTGCCGATCGCTATCTCGAACTGTTCGAGCATGTTCAGTCGGCGAAA
ATTTTCCCCGACAGTAAAACCTTTCCCGACTGCGCACCTAAAATGGACCCGCTGGATATCTTAATCCGCT
ACCGTAAAGTGCGCCGTCATCGTGATTTTGACTTGCGCAAGTTTGTTGAAAACCACTTCTGGCTGCCGGA
GGTCTACTCCAGCGAGTATGTATCGGACCCGCAAAATTCCCTGAAAGAGCATATCGACCAGCTGTGGCCG
GTGCTAACCCGCGAACCACAGGATCACATTCCGTGGTCTTCTCTGCTGGCGCTGCCGCAGTCATATATTG
TCCCGGGCGGCCGTTTTAGCGAAACCTACTATTGGGATTCCTATTTCACCATGCTGGGGCTGGCGGAAAG
TGGTCGGGAAGATTTGCTGAAATGCATGGCCGATAACTTCGCCTGGATGATCGAAAACTACGGTCACATC
CCCAACGGCAACCGCACCTATTATTTGAGCCGCTCGCAACCACCGGTTTTTGCGCTGATGGTGGAGTTGT
TTGAAGAAGATGGTGTACGCGGTGCGCGCCGCTATCTCGACCACCTTAAAATGGAATATGCCTTCTGGAT
GGACGGTGCAGAATCGTTAATCCCTAATCAGGCCTATCGCCATGTTGTGCGGATGCCGGACGGATCGCTG
CTCAACCGTTACTGGGACGATCGCGACACGCCGCGTGACGAATCCTGGCTTGAGGACGTTGAAACCGCGA
AACATTCTGGTCGCCCGCCCAACGAGGTGTACCGCGATTTACGCGCGGGGGCGGCCTCCGGTTGGGATTA
CTCTTCCCGTTGGCTGCGTGATACTGGTCGTCTGGCGAGCATTCGTACCACCCAGTTCATCCCCATCGAT
CTGAATGCCTTCCTGTTTAAACTGGAGAGCGCCATCGCCAACATCTCGGCGCTGAAAGGCGAGAAAGAGA
CAGAAGCACTGTTCCGCCAGAAAGCCAGTGCCCGTCGCGATGCGGTAAACCGTTACCTCTGGGATGATGA
AAACGGCATCTACCGCGATTACGACTGGCGACGCGAACAACTGGCGCTGTTTTCCGCTGCCGCCATTGTG
CCACTCTATGTCGGTATGGCGAACCATGAACAGGCCGATCGTCTGGCAAACGCCGTGCGCAGTCGGTTAC
TGACACCTGGCGGGATTCTGGCAAGCGAGTACGAAACCGGTGAACAGTGGGATAAACCCAACGGCTGGGC
ACCGTTACAATGGATGGCGATTCAGGGATTTAAAATGTACGGCGATGACCTTCTGGGTGATGAAATCGCG
CGAAGCTGGCTGAAGACGGTGAATCAGTTCTATCTGGAACAGCACAAACTGATCGAAAAATACCATATTG
CCGATGGTGTTCCCCGCGAAGGCGGCGGTGGCGAGTATCCGTTGCAGGATGGGTTTGGCTGGACTAACGG
TGTGGTACGCCGTTTAATTGGTTTGTACGGCGAACCATAA
# Upstream_100_bases:
ACGTGATCCACCGCACGCTTTGTCGCCCACCAGGCGGAGCGAATGACTACCCTTAAAGAAAAGCCGATAA
TTAGCGACGAATTTCGGAGGTTGGATCCTT
# Blattner_No_Ontology:
Carbon compound catabolism
# Gene_Position:
3667615-3669264 (Clockwise)
# Centisome_Position:
79.049
# Gene_Name:
treF
# GC_Content:
53.94%
# Metabolic_Importance:
Non_Essential
# Preceding_Gene:
yhjA
# Following_Gene:
yhjB
# Operon_Status:
No
# Operon_Components:
None
# Paralogues:
b1197 (treA) 51;
# Copy Number:
Unknown
# RNA_Copy_No.:
Log phase (2max): 5.21
Stationary phase (2max): 0.17
Ref: Nature Biotech., 18, 1262-68, Dec. 2000 (PMID=11101804)
# Genbank_ID_(DNA):
G1789936
# Genbank_ID_(Protein):
AAC76544.1
# SWISS_PROT_(AC_&_ID):
$ TREF_ECOLI (P62601)
# 2D_Gel_Image:
Not Available
# Other_Databases:
- ECOCYC: EG12245
- EcoGene: EG12245
- EMBL: U00039
- InterPro: IPR008928; IPR001661
- Pfam: PF01204
- PIR: S47739
- PRINTS: PR00744
- PROSITE: PS00927
# Pfam_Domain/Function:
PF01204 Trehalase
# Homologues:
Organism=Homo sapiens, GI6005914, Length=583, Positives=51%, Blast Score=275
Organism=Caenorhabditis elegans, GI25141398, Length=567, Positives=50%, Blast Score=254
Organism=Caenorhabditis elegans, GI17542196, Length=585, Positives=48%, Blast Score=247
Organism=Caenorhabditis elegans, GI17565078, Length=588, Positives=47%, Blast Score=231
Organism=Caenorhabditis elegans, GI25148109, Length=674, Positives=49%, Blast Score=231
Organism=Caenorhabditis elegans, GI17567007, Length=638, Positives=47%, Blast Score=191
Organism=Saccharomyces cerevisiae, GI6320204, Length=751, Positives=46%, Blast Score=158
Organism=Saccharomyces cerevisiae, GI6319473, Length=780, Positives=44%, Blast Score=144
Organism=Mus musculus, GI10946884, Length=576, Positives=51%, Blast Score=275
Organism=Drosophila melanogaster, GI24656680, Length=596, Positives=49%, Blast Score=242
Organism=Drosophila melanogaster, GI24656675, Length=596, Positives=49%, Blast Score=242
Organism=Drosophila melanogaster, GI24656670, Length=560, Positives=50%, Blast Score=241
Organism=Drosophila melanogaster, GI24656661, Length=560, Positives=50%, Blast Score=241
Organism=Drosophila melanogaster, GI17933716, Length=560, Positives=50%, Blast Score=241
Organism=Drosophila melanogaster, GI24656685, Length=515, Positives=51%, Blast Score=233
Organism=Drosophila melanogaster, GI22024178, Length=1042, Positives=44%, Blast Score=180
Organism=Drosophila melanogaster, GI45551104, Length=867, Positives=44%, Blast Score=130
Organism=Drosophila melanogaster, GI28573474, Length=326, Positives=45%, Blast Score=100
# Similarity:
Belongs to the glycosyl hydrolase 37 family.
# EC_Number:
3.2.1.28
# No._of_Amino_Acids:
549 (Translated Protein)
549 (Mature Protein)
# Molecular_Weight:
63697 63697
# Theoretical_pI:
4.67
# Theoretical_pI (Mature):
4.67
# Sequence:
// MLNQKIQNPNPDELMIEVDLCYELDPYELKLDEMIEAEPEPEMIEGLPASDALTPADRYL
// ELFEHVQSAKIFPDSKTFPDCAPKMDPLDILIRYRKVRRHRDFDLRKFVENHFWLPEVYS
// SEYVSDPQNSLKEHIDQLWPVLTREPQDHIPWSSLLALPQSYIVPGGRFSETYYWDSYFT
// MLGLAESGREDLLKCMADNFAWMIENYGHIPNGNRTYYLSRSQPPVFALMVELFEEDGVR
// GARRYLDHLKMEYAFWMDGAESLIPNQAYRHVVRMPDGSLLNRYWDDRDTPRDESWLEDV
// ETAKHSGRPPNEVYRDLRAGAASGWDYSSRWLRDTGRLASIRTTQFIPIDLNAFLFKLES
// AIANISALKGEKETEALFRQKASARRDAVNRYLWDDENGIYRDYDWRREQLALFSAAAIV
// PLYVGMANHEQADRLANAVRSRLLTPGGILASEYETGEQWDKPNGWAPLQWMAIQGFKMY
// GDDLLGDEIARSWLKTVNQFYLEQHKLIEKYHIADGVPREGGGGEYPLQDGFGWTNGVVR
// RLIGLYGEP
// /\
// MLNQKIQNPNPDELMIEVDLCYELDPYELKLDEMIEAEPEPEMIEGLPASDALTPADRYL
// ELFEHVQSAKIFPDSKTFPDCAPKMDPLDILIRYRKVRRHRDFDLRKFVENHFWLPEVYS
// SEYVSDPQNSLKEHIDQLWPVLTREPQDHIPWSSLLALPQSYIVPGGRFSETYYWDSYFT
// MLGLAESGREDLLKCMADNFAWMIENYGHIPNGNRTYYLSRSQPPVFALMVELFEEDGVR
// GARRYLDHLKMEYAFWMDGAESLIPNQAYRHVVRMPDGSLLNRYWDDRDTPRDESWLEDV
// ETAKHSGRPPNEVYRDLRAGAASGWDYSSRWLRDTGRLASIRTTQFIPIDLNAFLFKLES
// AIANISALKGEKETEALFRQKASARRDAVNRYLWDDENGIYRDYDWRREQLALFSAAAIV
// PLYVGMANHEQADRLANAVRSRLLTPGGILASEYETGEQWDKPNGWAPLQWMAIQGFKMY
// GDDLLGDEIARSWLKTVNQFYLEQHKLIEKYHIADGVPREGGGGEYPLQDGFGWTNGVVR
// RLIGLYGEP
# PROSITE_Motif:
TREHALASE_1; PATTERN. PS00927; Trehalase signature 1. P-G-G-R-F-x-E-x-Y-x-W-D-x-Y. PDOC00717; //
TREHALASE_2; PATTERN. PS00928; Trehalase signature 2. Q-W-D-x-P-x-[GA]-W-[PAS]-P. PDOC00717; //
# Important_Sites:
Not Available
# Transmembrane:
Not Available
# Cys/Met_Content:
0.5 %Cys (Translated Protein)
2.7 %Met (Translated Protein)
3.3 %Cys+Met (Translated Protein)
0.5 %Cys (Mature Protein)
2.7 %Met (Mature Protein)
3.3 %Cys+Met (Mature Protein)
# Secondary_Structure:
>TREF_ECOLI (Translated Protein)
MLNQKIQNPNPDELMIEVDLCYELDPYELKLDEMIEAEPEPEMIEGLPASDALTPADRYL
CCCCCCCCCCHHHHHHHHHHHHHCCCCEEEEEHHHHCCCCHHHHCCCCCCCCCCCHHHHC
ELFEHVQSAKIFPDSKTFPDCAPKMDPLDILIRYRKVRRHRDFDLRKFVENHFWLPEVYS
CHHHHHHHHHCCCCCCCEECCCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHCCCCCCCCC
SEYVSDPQNSLKEHIDQLWPVLTREPQDHIPWSSLLALPQSYIVPGGRFSETYYWDSYFT
CCCCCCCCHHHHHHHHHHHHHHHCCCCCCCCCCCEECCCCCEEECCCCEEEEECCHHHHH
MLGLAESGREDLLKCMADNFAWMIENYGHIPNGNRTYYLSRSQPPVFALMVELFEEDGVR
HHHHHHCCCHHHHHHHHHHHHHHHHHCCCCCCCCEEEECCCCCCCCHHHHHHHHHHCCHH
GARRYLDHLKMEYAFWMDGAESLIPNQAYRHVVRMPDGSLLNRYWDDRDTPRDESWLEDV
HHHHHHHHHHHHHHHHHCCCCCCCCCCCCCEEEECCCCCCCCCCCCCCCCCCCCCHHHHH
ETAKHSGRPPNEVYRDLRAGAASGWDYSSRWLRDTGRLASIRTTQFIPIDLNAFLFKLES
HCCCCCCCCHHHHHHHHHHHHHCCCCCCEECCCCCCCCCCCCCCEEEECCHHHHHHHHHH
AIANISALKGEKETEALFRQKASARRDAVNRYLWDDENGIYRDYDWRREQLALFSAAAIV
HHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHCCCHHHCEEEEEECCCCCCCCCCHHHHH
PLYVGMANHEQADRLANAVRSRLLTPGGILASEYETGEQWDKPNGWAPLQWMAIQGFKMY
HHHHCCCCHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHH
GDDLLGDEIARSWLKTVNQFYLEQHKLIEKYHIADGVPREGGGGEYPLQDGFGWTNGVVR
CCHHHHHHHHHHHHHHHHHHEECCCCEEECCCCCCCCCCCCCCCCCCCCCCCCCHHHHHH
RLIGLYGEP
HHHHHCCCC
/\
>TREF_ECOLI (Mature Protein)
MLNQKIQNPNPDELMIEVDLCYELDPYELKLDEMIEAEPEPEMIEGLPASDALTPADRYL
CCCCCCCCCCHHHHHHHHHHHHHCCCCEEEEEHHHHCCCCHHHHCCCCCCCCCCCHHHHC
ELFEHVQSAKIFPDSKTFPDCAPKMDPLDILIRYRKVRRHRDFDLRKFVENHFWLPEVYS
CHHHHHHHHHCCCCCCCEECCCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHCCCCCCCCC
SEYVSDPQNSLKEHIDQLWPVLTREPQDHIPWSSLLALPQSYIVPGGRFSETYYWDSYFT
CCCCCCCCHHHHHHHHHHHHHHHCCCCCCCCCCCEECCCCCEEECCCCEEEEECCHHHHH
MLGLAESGREDLLKCMADNFAWMIENYGHIPNGNRTYYLSRSQPPVFALMVELFEEDGVR
HHHHHHCCCHHHHHHHHHHHHHHHHHCCCCCCCCEEEECCCCCCCCHHHHHHHHHHCCHH
GARRYLDHLKMEYAFWMDGAESLIPNQAYRHVVRMPDGSLLNRYWDDRDTPRDESWLEDV
HHHHHHHHHHHHHHHHHCCCCCCCCCCCCCEEEECCCCCCCCCCCCCCCCCCCCCHHHHH
ETAKHSGRPPNEVYRDLRAGAASGWDYSSRWLRDTGRLASIRTTQFIPIDLNAFLFKLES
HCCCCCCCCHHHHHHHHHHHHHCCCCCCEECCCCCCCCCCCCCCEEEECCHHHHHHHHHH
AIANISALKGEKETEALFRQKASARRDAVNRYLWDDENGIYRDYDWRREQLALFSAAAIV
HHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHCCCHHHCEEEEEECCCCCCCCCCHHHHH
PLYVGMANHEQADRLANAVRSRLLTPGGILASEYETGEQWDKPNGWAPLQWMAIQGFKMY
HHHHCCCCHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHH
GDDLLGDEIARSWLKTVNQFYLEQHKLIEKYHIADGVPREGGGGEYPLQDGFGWTNGVVR
CCHHHHHHHHHHHHHHHHHHEECCCCEEECCCCCCCCCCCCCCCCCCCCCCCCCHHHHHH
RLIGLYGEP
HHHHHCCCC
# PDB_Accession:
& Not Available
# Resolution:
Not Available
# Structure_CLASS:
Mainly Alpha
# Quaternary_Structure:
Not Available
# Interacting_Partners:
Not Available
# Cofactors:
Not Available
# Metals_Ions:
Not Available
# Kcat_Value_[1/min]:
Not Available
# Specific_Activity_[micromol/min/mg]:
Not Available
# Km_Value_[mM]:
0.13-5.7 {trehalose}
# Substrates:
H2O + Trehalose
# Products:
D-Glucose
# Specific_Reaction:
H2O + Trehalose --> (2) D-Glucose
# General_Reaction:
O-Glycosyl bond hydrolysis;
# Inhibitor:
--K+ --Na+ --potassium glutamate
# Priority:
7.6
# Status:
Selected, Cloned, Expressed, Purified, Crystallized
# Availability:
Montreal-Kingston Bacterial Structural Genomics Initiative
#END_ECARDFILE
#BEGIN_ECARDFILE
# Entry_ID:
CC2479A.1
# Accession_No.:
UA0002479
# Name:
Putative sgc region protein sgcQ
# Alternate_Names:
Not Available
# General_Function:
FMN-linked oxidoreductases
# COG_Function:
General function prediction only (code R)
# COG_ID:
COG0434 Predicted TIM-barrel enzyme (Evalue = 1e-153)
# Specific_Function:
Not Available
# Riley_Gene_Function:
KpLE2 phage-like element; putative nucleoside triphosphatase
# Riley_Cell_Function:
>>>
extrachromosomal
Prophage genes and phage related functions
# Gene_Ontology:
>>>
Function: Not Available
||
>>>
Process: Not Available
||
>>>
Component: Not Available
# Location:
Cytoplasm
# Blattner_Number:
b4303
# Gene_Sequence:
ATGAGTTGGCTGAAAGAGGTTATTGGGACGGAAAAAGCGGTCATCGCCATGTGCCATCTACGTGCATTGC
CCGGCGACCCGAGTTTTGATGCGCAGTTGGGGATGAACTGGGTTATCGACAAAGCCTGGGACGATCTGAT
GGCGCTCCAAAATGGTGGGGTGGATGCAGTCATGTTCTCCAACGAGTTTAGTCTTCCCTATCTCACGAAG
GTGCGTCCGGAAACCACTGCGGCAATGGCACGAATCATCGGGCAATTAATGAGCGATATCCGCATCCCGT
TTGGCGTGAATGTTCTGTGGGATCCGGTCGCCTCATTCGACCTGGCGATGGCTACCGGCGCTAAGTTTAT
CCGCGAGATATTTACCGGTGCCTATGCCAGCGACTTTGGCGTCTGGGACACTAACGTCGGTGAGACCATC
CGTCATCAACACCGGATTGGTGCAGGCGAAGTGAAAACCTTGTTCAATATCGTCCCAGAGGCCGCCGTGT
ATCTGGGCAATCGCGATATCTGTTCTATTGCTAAATCGACAGTATTTAACAACCATCCTGATGCGCTCTG
TGTTTCTGGCCTGACCGCCGGGACGCGTACCGACAGCGCGCTGTTAAAACGGGTCAAAGAAACGGTGCCT
GACACCGTCGTGTTGGCCAACACGGGCGTCTGCCTGGAAAACGTGGAGGAACAACTCAGTATCGCCGATG
GCTGTGTGACCGCAACCACCTTTAAAAAGGACGGCGTTTTTGCCAATTTCGTTGACCAGGCGCGAGTCAG
TCAGTTTATGGAGAAAGTGCATCATATACGCCGATAA
# Upstream_100_bases:
GTCGCTTGGGATTATTGGCGTTGTCGTGGCGGTCGGTATTGTCGCCAGCGTCGTGCTGTTCTTACGTAAA
CGTGAATTATCGGAATAAGGAGTACTTTCA
# Blattner_No_Ontology:
Putative enzymes
# Gene_Position:
4526134-4526940 (Counter Clockwise)
# Centisome_Position:
97.570
# Gene_Name:
sgcQ
# GC_Content:
53.28%
# Metabolic_Importance:
Unknown
# Preceding_Gene:
sgcA
# Following_Gene:
sgcC
# Operon_Status:
Yes
# Operon_Components:
sgcQ_sgcC_b4567_sgcX Ref: RegulonDB http://kinich.cifn.unam.mx:8850/db/regulondb_cgi.query_simple?v_organism=ECK12&v_table=3&v_name=sgcQ
# Paralogues:
None
# Copy Number:
Unknown
# RNA_Copy_No.:
Log phase (2max): 2.11
Stationary phase (2max): 0.3
Ref: Nature Biotech., 18, 1262-68, Dec. 2000 (PMID=11101804)
# Genbank_ID_(DNA):
G1790757
# Genbank_ID_(Protein):
AAC77259.1
# SWISS_PROT_(AC_&_ID):
$ SGCQ_ECOLI (P39364)
# 2D_Gel_Image:
Not Available
# Other_Databases:
- ECOCYC: EG12555
- EcoGene: EG12555
- EMBL: U14003
- InterPro: IPR005137
- Pfam: PF03437
- PIR: S56528
# Pfam_Domain/Function:
PF03437 BtpA family;
# Homologues:
Organism=Caenorhabditis elegans, GI17539808, Length=298, Positives=44%, Blast Score=63.9
Organism=Drosophila melanogaster, GI24659916, Length=275, Positives=46%, Blast Score=69.7
# Similarity:
Belongs to the btpA family.
# EC_Number:
Not Available
# No._of_Amino_Acids:
268 (Translated Protein)
267 (Mature Protein)
# Molecular_Weight:
29355 29224
# Theoretical_pI:
5.63
# Theoretical_pI (Mature):
5.63
# Sequence:
// MSWLKEVIGTEKAVIAMCHLRALPGDPSFDAQLGMNWVIDKAWDDLMALQNGGVDAVMFS
// NEFSLPYLTKVRPETTAAMARIIGQLMSDIRIPFGVNVLWDPVASFDLAMATGAKFIREI
// FTGAYASDFGVWDTNVGETIRHQHRIGAGEVKTLFNIVPEAAVYLGNRDICSIAKSTVFN
// NHPDALCVSGLTAGTRTDSALLKRVKETVPDTVVLANTGVCLENVEEQLSIADGCVTATT
// FKKDGVFANFVDQARVSQFMEKVHHIRR
// /\
// SWLKEVIGTEKAVIAMCHLRALPGDPSFDAQLGMNWVIDKAWDDLMALQNGGVDAVMFSN
// EFSLPYLTKVRPETTAAMARIIGQLMSDIRIPFGVNVLWDPVASFDLAMATGAKFIREIF
// TGAYASDFGVWDTNVGETIRHQHRIGAGEVKTLFNIVPEAAVYLGNRDICSIAKSTVFNN
// HPDALCVSGLTAGTRTDSALLKRVKETVPDTVVLANTGVCLENVEEQLSIADGCVTATTF
// KKDGVFANFVDQARVSQFMEKVHHIRR
# PROSITE_Motif:
Not Available
# Important_Sites:
Not Available
# Transmembrane:
Not Available
# Cys/Met_Content:
1.9 %Cys (Translated Protein)
3.4 %Met (Translated Protein)
5.2 %Cys+Met (Translated Protein)
1.9 %Cys (Mature Protein)
3.0 %Met (Mature Protein)
4.9 %Cys+Met (Mature Protein)
# Secondary_Structure:
>SGCQ_ECOLI (Translated Protein)
MSWLKEVIGTEKAVIAMCHLRALPGDPSFDAQLGMNWVIDKAWDDLMALQNGGVDAVMFS
CHHHHHHHCCCCCEEEEEECCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCEEEEE
NEFSLPYLTKVRPETTAAMARIIGQLMSDIRIPFGVNVLWDPVASFDLAMATGAKFIREI
CCCCCCCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHCCCEEEEE
FTGAYASDFGVWDTNVGETIRHQHRIGAGEVKTLFNIVPEAAVYLGNRDICSIAKSTVFN
EEEEEECCCCCCCCHHHHHHHHHHHCCHHHHHHHHCCCHHHEECCCCCCHHHHHHHHHHC
NHPDALCVSGLTAGTRTDSALLKRVKETVPDTVVLANTGVCLENVEEQLSIADGCVTATT
CCCCEEEEECCCCCCCCCHHHHHHHHHHHCCCEEEEECCCCHHHHHHHHHHCCCEEEEHH
FKKDGVFANFVDQARVSQFMEKVHHIRR
EEECCCCCCCCCHHHHHHHHHHHHHHCC
/\
>SGCQ_ECOLI (Mature Protein)
SWLKEVIGTEKAVIAMCHLRALPGDPSFDAQLGMNWVIDKAWDDLMALQNGGVDAVMFSN
HHHHHHHCCCCCEEEEEECCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCEEEEEC
EFSLPYLTKVRPETTAAMARIIGQLMSDIRIPFGVNVLWDPVASFDLAMATGAKFIREIF
CCCCCCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHCCCEEEEEE
TGAYASDFGVWDTNVGETIRHQHRIGAGEVKTLFNIVPEAAVYLGNRDICSIAKSTVFNN
EEEEECCCCCCCCHHHHHHHHHHHCCHHHHHHHHCCCHHHEECCCCCCHHHHHHHHHHCC
HPDALCVSGLTAGTRTDSALLKRVKETVPDTVVLANTGVCLENVEEQLSIADGCVTATTF
CCCEEEEECCCCCCCCCHHHHHHHHHHHCCCEEEEECCCCHHHHHHHHHHCCCEEEEHHE
KKDGVFANFVDQARVSQFMEKVHHIRR
EECCCCCCCCCHHHHHHHHHHHHHHCC
# PDB_Accession:
& Not Available
# Resolution:
Not Available
# Structure_CLASS:
Alpha Beta
# Quaternary_Structure:
Not Available
# Interacting_Partners:
Not Available
# Cofactors:
Not Available
# Metals_Ions:
Not Available
# Kcat_Value_[1/min]:
Not Available
# Specific_Activity_[micromol/min/mg]:
Not Available
# Km_Value_[mM]:
Not Available
# Substrates:
Not Available
# Products:
Not Available
# Specific_Reaction:
Not Available
# General_Reaction:
Not Available
# Inhibitor:
Not Available
# Priority:
7.8
# Status:
Selected, Cloned
# Availability:
SPINE-EU: Department of Biochemistry and Biophysics (DBB) Stockholm University
#END_ECARDFILE
#BEGIN_ECARDFILE
# Entry_ID:
CC3455A.1
# Accession_No.:
UA0003455
# Name:
Hypothetical protein yfbN
# Alternate_Names:
Not Available
# General_Function:
UBA-like
# COG_Function:
Not Available
# COG_ID:
Not Available
# Specific_Function:
Not Available
# Riley_Gene_Function:
conserved hypothetical protein
# Riley_Cell_Function:
>>>
Not Available
# Gene_Ontology:
>>>
Function: Not Available
||
>>>
Process: Not Available
||
>>>
Component: Not Available
# Location:
Cytoplasm
# Blattner_Number:
b2273
# Gene_Sequence:
ATGGAATGGTTAAGTGAAATTCGTAAACTTCGGAAGAACGTACCTGTCGGTATCCAGGTTGCCAGACGTT
TGTTAGAGAGGACTGGCGGTGATGTTGATGAAGCCATCAAGTTGTTTCATATTGACCAAATCAATATATT
GACGGCAAAAGCAGACGTCACTCATCAGGAAGCAGAGAATGTTTTGTTGGCTACAAACTATGATATTGCA
GAAGCTCTTCGGCGTATTGATGAACAACGCTATACACTGACGGAATTGATTTTGCGTAAAAATAAGGATG
CCGGAGATGCCTTAAACAATATAGCATTGGCGATTGAATATGAGTGGGATCTCAAGCGTAAGTTTTGGTT
TGGTTTTGCAGATATCCAATTATTACCGCCAGTTTTACAAACATTTATGCTGGTTTATGAATGGCATGAA
TATGTTGGTTGGGAAGGAATGGAGTGTGGGATATTTTTTGAAAGTGATCATACTCACCAGCAATTGCAAG
CTTTGGGGTTATTAGAACTCGCCCAAAAAATGGTTACTGCAAGAATCCGATATGATGAGCTAAAAGACAA
GGCCGAAAATTTTCACGAGATTACAGAGGATGACATATTCAAAATGCTTATAATACATTGTGACCAACTT
GCAAGAGAGGTTGATTCTATATTACTGCAATTTGTGAAGGACAATATTGATGTTTTCCCGTGTCGCCATA
ACAGACACGAGTTATAA
# Upstream_100_bases:
ACATGAATGTTAAGCAGGAAAACGTGAGATATTCAGTCAGGCCGGGTCGTTATCCAGACGTTGTTATATT
TAATATCATAAATATTTAAAGGGGTTTGAC
# Blattner_No_Ontology:
Hypothetical, unclassified, unknown
# Gene_Position:
2385732-2386448 (Counter Clockwise)
# Centisome_Position:
51.436
# Gene_Name:
yfbN
# GC_Content:
39.05%
# Metabolic_Importance:
Unknown
# Preceding_Gene:
yfbM
# Following_Gene:
yfbO
# Operon_Status:
No
# Operon_Components:
None
# Paralogues:
None
# Copy Number:
Unknown
# RNA_Copy_No.:
Log phase (2max): 0.52
Stationary phase (2max): 0.73
Ref: Nature Biotech., 18, 1262-68, Dec. 2000 (PMID=11101804)
# Genbank_ID_(DNA):
G1788609
# Genbank_ID_(Protein):
AAC75333.1
# SWISS_PROT_(AC_&_ID):
$ YFBN_ECOLI (P76484)
# 2D_Gel_Image:
Not Available
# Other_Databases:
- ECOCYC: EG14098
- EcoGene: EG14098
- EMBL: U00096
- InterPro: IPR009060
- PIR: G64998
# Pfam_Domain/Function:
None
# Homologues:
Not Available
# Similarity:
Not Available
# EC_Number:
Not Available
# No._of_Amino_Acids:
238 (Translated Protein)
238 (Mature Protein)
# Molecular_Weight:
27991 27991
# Theoretical_pI:
4.87
# Theoretical_pI (Mature):
4.87
# Sequence:
// MEWLSEIRKLRKNVPVGIQVARRLLERTGGDVDEAIKLFHIDQINILTAKADVTHQEAEN
// VLLATNYDIAEALRRIDEQRYTLTELILRKNKDAGDALNNIALAIEYEWDLKRKFWFGFA
// DIQLLPPVLQTFMLVYEWHEYVGWEGMECGIFFESDHTHQQLQALGLLELAQKMVTARIR
// YDELKDKAENFHEITEDDIFKMLIIHCDQLAREVDSILLQFVKDNIDVFPCRHNRHEL
// /\
// MEWLSEIRKLRKNVPVGIQVARRLLERTGGDVDEAIKLFHIDQINILTAKADVTHQEAEN
// VLLATNYDIAEALRRIDEQRYTLTELILRKNKDAGDALNNIALAIEYEWDLKRKFWFGFA
// DIQLLPPVLQTFMLVYEWHEYVGWEGMECGIFFESDHTHQQLQALGLLELAQKMVTARIR
// YDELKDKAENFHEITEDDIFKMLIIHCDQLAREVDSILLQFVKDNIDVFPCRHNRHEL
# PROSITE_Motif:
Not Available
# Important_Sites:
Not Available
# Transmembrane:
Not Available
# Cys/Met_Content:
1.3 %Cys (Translated Protein)
2.1 %Met (Translated Protein)
3.4 %Cys+Met (Translated Protein)
1.3 %Cys (Mature Protein)
2.1 %Met (Mature Protein)
3.4 %Cys+Met (Mature Protein)
# Secondary_Structure:
>YFBN_ECOLI (Translated Protein)
MEWLSEIRKLRKNVPVGIQVARRLLERTGGDVDEAIKLFHIDQINILTAKADVTHQEAEN
CHHHHHHHHHHHHCCCCHHHHHHHHHHHCCCHHHHHEEEEEEEEEEEEEECCCCHHCCCC
VLLATNYDIAEALRRIDEQRYTLTELILRKNKDAGDALNNIALAIEYEWDLKRKFWFGFA
EEEECCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCEEEEEEEEECCCEEEEECCH
DIQLLPPVLQTFMLVYEWHEYVGWEGMECGIFFESDHTHQQLQALGLLELAQKMVTARIR
HHHCCHHHHHHHHHHHHHHHHHCCCCCEEEEEECCCCCHHHHHHHHHHHHHHHHHHHHHH
YDELKDKAENFHEITEDDIFKMLIIHCDQLAREVDSILLQFVKDNIDVFPCRHNRHEL
HHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCEECCCCCCCCC
/\
>YFBN_ECOLI (Mature Protein)
EWLSEIRKLRKNVPVGIQVARRLLERTGGDVDEAIKLFHIDQINILTAKADVTHQEAENV
HHHHHHHHHHHHCCCCHHHHHHHHHHHCCCHHHHHEEEEEEEEEEEEEECCCCHHCCCCE
LLATNYDIAEALRRIDEQRYTLTELILRKNKDAGDALNNIALAIEYEWDLKRKFWFGFAD
EEECCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCEEEEEEEEECCCEEEEECCHH
IQLLPPVLQTFMLVYEWHEYVGWEGMECGIFFESDHTHQQLQALGLLELAQKMVTARIRY
HHCCHHHHHHHHHHHHHHHHHCCCCCEEEEEECCCCCHHHHHHHHHHHHHHHHHHHHHHH
DELKDKAENFHEITEDDIFKMLIIHCDQLAREVDSILLQFVKDNIDVFPCRHNRHEL
HHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCEECCCCCCCCC
# PDB_Accession:
& Not Available
# Resolution:
Not Available
# Structure_CLASS:
Alpha Beta
# Quaternary_Structure:
Not Available
# Interacting_Partners:
Not Available
# Cofactors:
Not Available
# Metals_Ions:
Not Available
# Kcat_Value_[1/min]:
Not Available
# Specific_Activity_[micromol/min/mg]:
Not Available
# Km_Value_[mM]:
Not Available
# Substrates:
Not Available
# Products:
Not Available
# Specific_Reaction:
Not Available
# General_Reaction:
Not Available
# Inhibitor:
Not Available
# Priority:
9.2
# Status:
Not Available
# Availability:
Not Available
#END_ECARDFILE
#BEGIN_ECARDFILE
# Entry_ID:
CC2265A.1
# Accession_No.:
UA0002265
# Name:
Putative HTH-type transcriptional regulator yiaJ
# Alternate_Names:
Not Available
# General_Function:
Regulatory functions; Member of IclR; Winged helix
# COG_Function:
Transcription (code K)
# COG_ID:
COG1414 Transcriptional regulator (Evalue = 1e-160)
# Specific_Function:
This protein transcriptionally regulates yiaKLMNOPQRS.
# Riley_Gene_Function:
DNA-binding transcriptional repressor (IclR family)
# Riley_Cell_Function:
>>>
Information transfer
RNA related
Transcription related
||
>>>
Regulation
Type of regulation
Transcriptional level
Repressor
||
>>>
Regulation
Genetic unit regulated
Operon (regulation of one operon)
# Gene_Ontology:
>>>
Function: binding
Function: nucleic acid binding
Function: DNA binding
||
>>>
Process: physiological process
Process: metabolism
Process: regulation of metabolism
Process: regulation of cellular metabolism
Process: regulation of nucleobase, nucleoside, nucleotide and nucleic acid metabolism
Process: regulation of transcription
Process: regulation of transcription, DNA-dependent
||
>>>
Process: cellular metabolism
Process: nucleobase, nucleoside, nucleotide and nucleic acid metabolism
Process: transcription
Process: transcription, DNA-dependent
Process: regulation of transcription, DNA-dependent
||
>>>
Process: regulation of transcription
Process: regulation of transcription, DNA-dependent
||
>>>
Process: regulation of nucleobase, nucleoside, nucleotide and nucleic acid metabolism
Process: regulation of transcription
Process: regulation of transcription, DNA-dependent
||
>>>
Process: regulation of cellular metabolism
Process: regulation of nucleobase, nucleoside, nucleotide and nucleic acid metabolism
Process: regulation of transcription
Process: regulation of transcription, DNA-dependent
||
>>>
Process: primary metabolism
Process: nucleobase, nucleoside, nucleotide and nucleic acid metabolism
Process: transcription
Process: transcription, DNA-dependent
Process: regulation of transcription, DNA-dependent
||
>>>
Process: regulation of transcription
Process: regulation of transcription, DNA-dependent
||
>>>
Process: regulation of nucleobase, nucleoside, nucleotide and nucleic acid metabolism
Process: regulation of transcription
Process: regulation of transcription, DNA-dependent
||
>>>
Process: regulation of physiological process
Process: regulation of metabolism
Process: regulation of cellular metabolism
Process: regulation of nucleobase, nucleoside, nucleotide and nucleic acid metabolism
Process: regulation of transcription
Process: regulation of transcription, DNA-dependent
||
>>>
Process: regulation of cellular physiological process
Process: regulation of cellular metabolism
Process: regulation of nucleobase, nucleoside, nucleotide and nucleic acid metabolism
Process: regulation of transcription
Process: regulation of transcription, DNA-dependent
||
>>>
Process: cellular physiological process
Process: cellular metabolism
Process: nucleobase, nucleoside, nucleotide and nucleic acid metabolism
Process: transcription
Process: transcription, DNA-dependent
Process: regulation of transcription, DNA-dependent
||
>>>
Process: regulation of transcription
Process: regulation of transcription, DNA-dependent
||
>>>
Process: regulation of nucleobase, nucleoside, nucleotide and nucleic acid metabolism
Process: regulation of transcription
Process: regulation of transcription, DNA-dependent
||
>>>
Process: regulation of cellular metabolism
Process: regulation of nucleobase, nucleoside, nucleotide and nucleic acid metabolism
Process: regulation of transcription
Process: regulation of transcription, DNA-dependent
||
>>>
Process: regulation of cellular physiological process
Process: regulation of cellular metabolism
Process: regulation of nucleobase, nucleoside, nucleotide and nucleic acid metabolism
Process: regulation of transcription
Process: regulation of transcription, DNA-dependent
||
>>>
Process: cellular process
Process: regulation of cellular process
Process: regulation of cellular physiological process
Process: regulation of cellular metabolism
Process: regulation of nucleobase, nucleoside, nucleotide and nucleic acid metabolism
Process: regulation of transcription
Process: regulation of transcription, DNA-dependent
||
>>>
Process: cellular physiological process
Process: cellular metabolism
Process: nucleobase, nucleoside, nucleotide and nucleic acid metabolism
Process: transcription
Process: transcription, DNA-dependent
Process: regulation of transcription, DNA-dependent
||
>>>
Process: regulation of transcription
Process: regulation of transcription, DNA-dependent
||
>>>
Process: regulation of nucleobase, nucleoside, nucleotide and nucleic acid metabolism
Process: regulation of transcription
Process: regulation of transcription, DNA-dependent
||
>>>
Process: regulation of cellular metabolism
Process: regulation of nucleobase, nucleoside, nucleotide and nucleic acid metabolism
Process: regulation of transcription
Process: regulation of transcription, DNA-dependent
||
>>>
Process: regulation of cellular physiological process
Process: regulation of cellular metabolism
Process: regulation of nucleobase, nucleoside, nucleotide and nucleic acid metabolism
Process: regulation of transcription
Process: regulation of transcription, DNA-dependent
||
>>>
Process: regulation of biological process
Process: regulation of physiological process
Process: regulation of metabolism
Process: regulation of cellular metabolism
Process: regulation of nucleobase, nucleoside, nucleotide and nucleic acid metabolism
Process: regulation of transcription
Process: regulation of transcription, DNA-dependent
||
>>>
Process: regulation of cellular physiological process
Process: regulation of cellular metabolism
Process: regulation of nucleobase, nucleoside, nucleotide and nucleic acid metabolism
Process: regulation of transcription
Process: regulation of transcription, DNA-dependent
||
>>>
Process: regulation of cellular process
Process: regulation of cellular physiological process
Process: regulation of cellular metabolism
Process: regulation of nucleobase, nucleoside, nucleotide and nucleic acid metabolism
Process: regulation of transcription
Process: regulation of transcription, DNA-dependent
||
>>>
Component: Not Available
# Location:
Cytoplasm
# Blattner_Number:
b3574
# Gene_Sequence:
ATGGGGAAAGAAGTGATGGGAAAAAAAGAGAACGAGATGGCGCAGGAAAAAGAGCGTCCAGCCGGAAGCC
AGAGTCTGTTTCGCGGGTTGATGCTGATTGAGATTTTGAGCAACTATCCAAACGGTTGTCCGTTGGCGCA
TCTTTCGGAGCTGGCTGGTTTAAATAAGAGTACCGTCCATCGCTTATTGCAGGGATTACAGTCCTGCGGC
TATGTGACCACCGCGCCTGCCGCAGGGAGTTATCGCCTGACCACCAAATTTATTGCCGTCGGGCAGAAGG
CGCTGTCTTCGCTGAATATCATTCATATCGCCGCTCCGCATCTTGAGGCACTGAACATCGCCACTGGTGA
AACCATTAACTTCTCCAGCCGCGAAGACGATCACGCTATTTTGATTTATAAGCTGGAACCCACAACCGGG
ATGCTGCGAACCCGTGCCTATATTGGCCAGCATATGCCGCTCTACTGTTCCGCAATGGGCAAGATCTACA
TGGCGTTTGGTCACCCGGACTACGTGAAGTCATACTGGGAAAGCCATCAGCATGAGATCCAGCCGTTAAC
CCGCAATACCATTACCGAGCTGCCCGCGATGTTCGACGAACTGGCGCACATTCGTGAAAGCGGAGCGGCG
ATGGACAGAGAAGAAAACGAACTCGGCGTCTCCTGTATTGCTGTTCCGGTGTTTGATATTCATGGGCGGG
TGCCGTACGCCGTGTCGATTTCGCTTTCGACATCACGTCTGAAACAGGTGGGAGAGAAAAATCTCCTGAA
ACCACTGCGTGAAACCGCGCAGGCTATTTCTAATGAACTGGGATTTACTGTCAGGGATGACCTGGGCGCG
ATCACATAA
# Upstream_100_bases:
ATTGATGAATTTCAAAAGACATAAAAATCAATTGGTTATAAATTATCTGTCGAGATCGTGAACTACGGCA
CACTTTGCGCTACCATCAGGACGCGACAAA
# Blattner_No_Ontology:
Putative regulatory proteins
# Gene_Position:
3739707-3740555 (Counter Clockwise)
# Centisome_Position:
80.621
# Gene_Name:
yiaJ
# GC_Content:
52.18%
# Metabolic_Importance:
Unknown
# Preceding_Gene:
ysaA
# Following_Gene:
yiaK
# Operon_Status:
No
# Operon_Components:
None
# Paralogues:
b0272 (yagI) 33; b1827 (kdgR) 34; b0506 (allR) 30; b4018 (iclR) 32; b4299 (yjhI) 30; b2248 (yfaX) 25;
# Copy Number:
Unknown
# RNA_Copy_No.:
Log phase (2max): 5.08
Stationary phase (2max): 0.16
Ref: Nature Biotech., 18, 1262-68, Dec. 2000 (PMID=11101804)
# Genbank_ID_(DNA):
G1789999
# Genbank_ID_(Protein):
AAC76598.1
# SWISS_PROT_(AC_&_ID):
$ YIAJ_ECOLI (P37671)
# 2D_Gel_Image:
Not Available
# Other_Databases:
- ECOCYC: EG12278
- EcoGene: EG12278
- EMBL: U00039
- InterPro: IPR005471; IPR011991
- Pfam: PF01614
- PIR: S47795
- PROSITE: PS51077
# Pfam_Domain/Function:
PF01614 Bacterial transcriptional regulator
# Homologues:
Not Available
# Similarity:
Contains 1 HTH iclR-type DNA-binding domain. Contains 1 iclR-ED (iclR effector binding) domain.
# EC_Number:
Not Available
# No._of_Amino_Acids:
282 (Translated Protein)
281 (Mature Protein)
# Molecular_Weight:
31067 30936
# Theoretical_pI:
6.91
# Theoretical_pI (Mature):
6.91
# Sequence:
// MGKEVMGKKENEMAQEKERPAGSQSLFRGLMLIEILSNYPNGCPLAHLSELAGLNKSTVH
// RLLQGLQSCGYVTTAPAAGSYRLTTKFIAVGQKALSSLNIIHIAAPHLEALNIATGETIN
// FSSREDDHAILIYKLEPTTGMLRTRAYIGQHMPLYCSAMGKIYMAFGHPDYVKSYWESHQ
// HEIQPLTRNTITELPAMFDELAHIRESGAAMDREENELGVSCIAVPVFDIHGRVPYAVSI
// SLSTSRLKQVGEKNLLKPLRETAQAISNELGFTVRDDLGAIT
// /\
// GKEVMGKKENEMAQEKERPAGSQSLFRGLMLIEILSNYPNGCPLAHLSELAGLNKSTVHR
// LLQGLQSCGYVTTAPAAGSYRLTTKFIAVGQKALSSLNIIHIAAPHLEALNIATGETINF
// SSREDDHAILIYKLEPTTGMLRTRAYIGQHMPLYCSAMGKIYMAFGHPDYVKSYWESHQH
// EIQPLTRNTITELPAMFDELAHIRESGAAMDREENELGVSCIAVPVFDIHGRVPYAVSIS
// LSTSRLKQVGEKNLLKPLRETAQAISNELGFTVRDDLGAIT
# PROSITE_Motif:
HTH_ICLR_FAMILY; PATTERN. PS01051; Bacterial regulatory proteins, iclR family signature. [GAD]-[YWA]-[GSTAC]-x-[DSV]-x(2)-E-x(6)-[CSA]-[LIV]-[GSA]-x(2)-[LIV]-PA [FYWLH]-[DNG]. PDOC00807; //
# Important_Sites:
Not Available
# Transmembrane:
Not Available
# Cys/Met_Content:
1.4 %Cys (Translated Protein)
3.5 %Met (Translated Protein)
5.0 %Cys+Met (Translated Protein)
1.4 %Cys (Mature Protein)
3.2 %Met (Mature Protein)
4.6 %Cys+Met (Mature Protein)
# Secondary_Structure_(PDB):
MNTLKKAFEILDFIVKNPGDVSVSEIAEKFNMSVSNAYKYMVVLEEKGFVL
CCHHHHHHHHHHHHHHCCCEEEHHHHHHHHCCCHHHHHHHHHHHHHHCEEE
RKKDKRYVPGYKLIEYGSFVLRRFNIRDIAHDHLVDIMKRTGETVHLILKD
ECCCCEEEEEHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCEEEEEEEEC
GFEGVYIDKVEGEQSIPMVSRLGMKVDLYSTASGKSILAFVPEKELKEYLK
CCEEEEEEEECCCCCCCCCCCCCEEECCCCCHHHHHHHHCCCHHHHHHHHH
IVELKPKTPNTITNPRVLKRELEKIRKRGYAVDNEENEIGIMCVGVPIFDH
CCCCCCCCCCCCCCHHHHHHHHHHHHHHCEEEEECCCCCCEEEEEEEEECC
NGYPVAGVSISGVARKFTEEKIEEYSDVLKEKAEEISRKLGY
CCCCEEEEEEEEECCCCCHHHHHHHHHHHHHHHHHHHHHHCC
# PDB_Accession:
& Model Based on 1MKM (8-253)
# Resolution:
Not Available
# Structure_CLASS:
Alpha Beta
# Quaternary_Structure:
Not Available
# Interacting_Partners:
1) DNA,
# Cofactors:
Not Available
# Metals_Ions:
Not Available
# Kcat_Value_[1/min]:
Not Available
# Specific_Activity_[micromol/min/mg]:
Not Available
# Km_Value_[mM]:
Not Available
# Substrates:
DNA
# Products:
Not Available
# Specific_Reaction:
Protein + DNA = Protein-DNA
# General_Reaction:
Not Available
# Inhibitor:
Not Available
# Priority:
1.0
# Status:
Selected, Cloned, Expressed, Soluble
# Availability:
RSGI
#END_ECARDFILE
#BEGIN_ECARDFILE
# Entry_ID:
CC0594A.1
# Accession_No.:
UA0000594
# Name:
Lysine-arginine-ornithine-binding periplasmic protein precursor
# Alternate_Names:
LAO- binding protein
# General_Function:
Transport and binding proteins; Member of the ATP-binding Cassette (ABC) Superfamily; Periplasmic binding protein-like II
# COG_Function:
Amino acid transport and metabolism (code E)
# COG_ID:
COG0834 ABC-type amino acid transport/signal transduction systems, periplasmic component/domain (Evalue = 1e-144)
# Specific_Function:
This periplasmic binding protein is involved in an arginine transport system. ArgT and histidine-binding protein J (hisJ) interact with a common membrane-bound receptor, hisP.
# Riley_Gene_Function:
lysine/arginine/ornithine transporter subunit; periplasmic-binding component of ABC superfamily
# Riley_Cell_Function:
>>>
Metabolism
Building block biosynthesis
Amino acids
Arginine
||
>>>
Metabolism
Building block biosynthesis
Amino acids
Lysine, diaminopimelate
||
>>>
Transport
Primary Active Transporters
Pyrophosphate Bond (ATP; GTP; P2) Hydrolysis-driven Active Transporters
The ATP-binding Cassette (ABC) Superfamily + ABC-type Uptake Permeases
periplasmic binding component
||
>>>
Transport
substrate
lysine/arginine/ornithine
||
>>>
Location of gene products
Periplasmic space
# Gene_Ontology:
>>>
Function: transporter activity
||
>>>
Function: transporter activity
||
>>>
Function: transporter activity
||
>>>
Process: physiological process
Process: cellular physiological process
Process: transport
||
>>>
Process: localization
Process: establishment of localization
Process: transport
||
>>>
Process: cellular process
Process: cellular physiological process
Process: transport
Process: physiological process
Process: cellular physiological process
Process: transport
||
>>>
Process: localization
Process: establishment of localization
Process: transport
||
>>>
Process: cellular process
Process: cellular physiological process
Process: transport
Process: physiological process
Process: cellular physiological process
Process: transport
||
>>>
Process: localization
Process: establishment of localization
Process: transport
||
>>>
Process: cellular process
Process: cellular physiological process
Process: transport
||
>>>
Component: cell
Component: external encapsulating structure
Component: cell envelope
Component: periplasmic space (sensu Proteobacteria)
||
>>>
Component: periplasmic space
Component: periplasmic space (sensu Proteobacteria)
||
>>>
Component: envelope
Component: cell envelope
Component: periplasmic space (sensu Proteobacteria)
||
>>>
Component: cell
Component: external encapsulating structure
Component: cell envelope
Component: periplasmic space (sensu Proteobacteria)
||
>>>
Component: periplasmic space
Component: periplasmic space (sensu Proteobacteria)
||
>>>
Component: envelope
Component: cell envelope
Component: periplasmic space (sensu Proteobacteria)
# Location:
Periplasmic Protein
# Blattner_Number:
b2310
# Gene_Sequence:
ATGAAGAAGTCGATTCTCGCTCTGTCTTTGTTAGTCGGTCTCTCCACAGCGGCTTCCAGCTATGCGGCGC
TACCGGAGACGGTACGTATCGGAACCGATACCACCTACGCACCGTTCTCATCGAAAGATGCTAAAGGTGA
TTTTGTTGGCTTTGATATCGATCTCGGTAACGAGATGTGCAAACGGATGCAGGTGAAATGTACCTGGGTT
GCCAGTGACTTTGACGCGCTGATCCCCTCACTGAAAGCGAAAAAAATCGACGCTATTATTTCGTCGCTTT
CCATTACCGATAAACGTCAGCAGGAGATTGCCTTCTCCGACAAGCTGTACGCCGCAGATTCTCGTTTGAT
TGCGGCCAAAGGTTCACCGATTCAGCCAACGCTGGATTCACTGAAAGGTAAACATGTTGGTGTGCTGCAG
GGATCAACCCAGGAAGCTTACGCTAACGAGACCTGGCGTAGTAAAGGCGTGGATGTGGTGGCCTATGCCA
ACCAGGATTTGGTCTATTCCGATCTGGCTGCAGGACGTCTGGATGCTGCGTTACAAGATGAAGTTGCTGC
CAGCGAAGGATTCCTCAAGCAACCTGCTGGTAAAGATTTCGCCTTTGCTGGCTCATCAGTAAAAGACAAA
AAATACTTCGGTGATGGCACCGGTGTAGGGCTACGTAAAGATGATGCTGAACTGACGGCTGCCTTCAATA
AGGCGCTTGGCGAGCTGCGTCAGGACGGCACCTACGACAAGATGGCGAAAAAGTATTTCGACTTTAATGT
CTACGGTGACTGA
# Upstream_100_bases:
ACTGTTGTCGTCAAGATGGCATAAGACCTGCATGAAAGAGCCTGCAAACACACAACACAATACACAACAT
AAAAAAGCCATTTTCACTTGAGGGTTATGT
# Blattner_No_Ontology:
Transport and binding proteins
# Gene_Position:
2425031-2425813 (Counter Clockwise)
# Centisome_Position:
52.284
# Gene_Name:
argT
# GC_Content:
50.19%
# Metabolic_Importance:
Unknown
# Preceding_Gene:
hisJ
# Following_Gene:
ubiX
# Operon_Status:
No
# Operon_Components:
None
# Paralogues:
b2309 (hisJ) 67; b0860 (artJ) 35; b0863 (artI) 33; b1920 (fliY) 29; b0811 (glnH) 32; b0655 (gltI) 24;
# Copy Number:
900 Molecules/Cell In: Growth Phase, Minimal Media (E. Coli Proteins From A SDS/Heat Extract).
100 Molecules/Cell In: Stationary Phase, Rich Media (Periplasmic-Enriched E. Coli Proteins).
Not Available
# RNA_Copy_No.:
Log phase (2max): 0.04
Stationary phase (2max): 0.11
Ref: Nature Biotech., 18, 1262-68, Dec. 2000 (PMID=11101804)
# Genbank_ID_(DNA):
G1788649
# Genbank_ID_(Protein):
AAC75370.1
# SWISS_PROT_(AC_&_ID):
$ ARGT_ECOLI (P09551)
# 2D_Gel_Image:
http://ca.expasy.org/cgi-bin/ch2d-compute-map?ECOLI4.5-5.5,P09551
# Other_Databases:
- 2DPAGE: P09551
- ECOCYC: EG10072
- EcoGene: EG10072
- EMBL: U00096
- InterPro: IPR001311; IPR005768; IPR001638
- Pfam: PF00497
- PIR: D65003
- PROSITE: PS01039
# Pfam_Domain/Function:
PF00497 Bacterial extracellular solute-binding proteins, family 3
# Homologues:
Not Available
# Similarity:
Belongs to the bacterial solute-binding protein 3 family.
# EC_Number:
Not Available
# No._of_Amino_Acids:
260 (Translated Protein)
238 (Mature Protein)
# Molecular_Weight:
27992 25785
# Theoretical_pI:
5.46
# Theoretical_pI (Mature):
4.99
# Sequence:
// MKKSILALSLLVGLSTAASSYAALPETVRIGTDTTYAPFSSKDAKGDFVGFDIDLGNEMC
// KRMQVKCTWVASDFDALIPSLKAKKIDAIISSLSITDKRQQEIAFSDKLYAADSRLIAAK
// GSPIQPTLDSLKGKHVGVLQGSTQEAYANETWRSKGVDVVAYANQDLVYSDLAAGRLDAA
// LQDEVAASEGFLKQPAGKDFAFAGSSVKDKKYFGDGTGVGLRKDDAELTAAFNKALGELR
// QDGTYDKMAKKYFDFNVYGD
// /\
// ALPETVRIGTDTTYAPFSSKDAKGDFVGFDIDLGNEMCKRMQVKCTWVASDFDALIPSLK
// AKKIDAIISSLSITDKRQQEIAFSDKLYAADSRLIAAKGSPIQPTLDSLKGKHVGVLQGS
// TQEAYANETWRSKGVDVVAYANQDLVYSDLAAGRLDAALQDEVAASEGFLKQPAGKDFAF
// AGSSVKDKKYFGDGTGVGLRKDDAELTAAFNKALGELRQDGTYDKMAKKYFDFNVYGD
# PROSITE_Motif:
SBP_BACTERIAL_3; PATTERN. PS01039; Bacterial extracellular solute-binding proteins, family 3 signature. G-[FYIL]-[DE]-[LIVMT]-[DE]-[LIVMF]-x(3)-[LIVMA]-[VAGC]-x(2)-[LIVMAGN]. PDOC00798; //
# Important_Sites:
Signal Chain 1 22
# Transmembrane:
Not Available
# Cys/Met_Content:
0.8 %Cys (Translated Protein)
1.5 %Met (Translated Protein)
2.3 %Cys+Met (Translated Protein)
0.8 %Cys (Mature Protein)
1.3 %Met (Mature Protein)
2.1 %Cys+Met (Mature Protein)
# Secondary_Structure_(PDB):
ALPQTVRIGTDTTYAPFSSKDAKGEFIGFDIDLGNEMCKRMQVKCTWVASD
CCCEEEEEEEECCCCEEEEECCCCCCCCHHHHHHHHHHHHHCEEEEEEEEC
FDALIPSLKAKKIDAIISSLSITDKRQQEIAFSDKLYAADSRLIAAKGSPI
CCHHHHHHHHCCCEEEECCEEECHHHHHCEEEEEEEEEEEEEEEEECCCCC
QPTLESLKGKHVGVLQGSTQEAYANDNWRTKGVDVVAYANQDLIYSDLTAG
CCCHHHHCCEEEEEECCHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHC
RLDAALQDEVAASEGFLKQPAGKEYAFAGPSVKDKKYFGDGTGVGLRKDDT
CCEEEEECHHHHHHCCCCCCCCCCEEEECCEEECHHHHCCCEEEEECCCHH
ELKAAFDKALTELRQDGTYDKMAKKYFDFNVYGDK
HHHHHHHHHHHHHHCCCHHHHHHHHCCCCCCCCCC
# PDB_Accession:
& 1lst
# Resolution:
1.80
# Structure_CLASS:
Alpha Beta
# Quaternary_Structure:
heteropentameric ABC2D complex of argT and hisM and hisP (2x) and hisQ
# Interacting_Partners:
1) hisM, 2) hisP, 3) hisQ,
# Cofactors:
Not Available
# Metals_Ions:
Not Available
# Kcat_Value_[1/min]:
Not Available
# Specific_Activity_[micromol/min/mg]:
Not Available
# Km_Value_[mM]:
Not Available
# Substrates:
ATP + L-ornithine [Periplasm] + H2O + ATP + L-arginine [Periplasm] + L-lysine [Periplasm]
# Products:
ADP + phosphate + L-ornithine [Cytoplasm] + ADP + L-arginine [Cytoplasm] + L-lysine [Cytoplasm]
# Specific_Reaction:
ATP + L-ornithine [Periplasm] + H2O = ADP + phosphate + L-ornithine [Cytoplasm]
ATP + L-arginine [Periplasm] + H2O = ADP + phosphate + L-arginine [Cytoplasm]
ATP + L-lysine [Periplasm] + H2O = ADP + phosphate + L-lysine [Cytoplasm]
# General_Reaction:
Not Available
# Inhibitor:
Not Available
# Priority:
0.0
# Status:
Selected
# Availability:
Montreal-Kingston Bacterial Structural Genomics Initiative
#END_ECARDFILE
#BEGIN_ECARDFILE
# Entry_ID:
CC0227A.1
# Accession_No.:
UA0000227
# Name:
Maltose operon periplasmic protein precursor
# Alternate_Names:
Not Available
# General_Function:
Transport and binding proteins
# COG_Function:
Not Available
# COG_ID:
Not Available
# Specific_Function:
Not yet known. Might function in the uptake of a still unidentified substrate.
# Riley_Gene_Function:
periplasmic protein of maltose regulon
# Riley_Cell_Function:
>>>
Metabolism
Carbon compound utilization
Carbohydrates/Carbon compounds
||
>>>
Location of gene products
Periplasmic space
# Gene_Ontology:
>>>
Function: Not Available
||
>>>
Process: physiological process
Process: cellular physiological process
Process: transport
Process: carbohydrate transport
||
>>>
Process: localization
Process: establishment of localization
Process: transport
Process: carbohydrate transport
||
>>>
Process: cellular process
Process: cellular physiological process
Process: transport
Process: carbohydrate transport
||
>>>
Component: cell
Component: periplasmic space
# Location:
Periplasmic Protein
# Blattner_Number:
b4037
# Gene_Sequence:
ATGAAAATGAATAAAAGTCTCATCGTCCTCTGTTTATCAGCAGGGTTACTGGCAAGCGCGCCTGGAATTA
GCCTTGCCGATGTTAACTACGTACCGCAAAACACCAGCGACGCGCCAGCCATTCCATCTGCTGCGCTGCA
ACAACTCACCTGGACACCGGTCGATCAATCTAAAACCCAGACCACCCAACTGGCGACCGGCGGCCAACAA
CTGAACGTTCCCGGCATCAGTGGTCCGGTTGCTGCGTACAGCGTCCCGGCAAACATTGGCGAACTGACCC
TGACGCTGACCAGCGAAGTGAACAAACAAACCAGCGTTTTTGCGCCGAACGTGCTGATTCTTGATCAGAA
CATGACCCCATCAGCCTTCTTCCCCAGCAGTTATTTCACCTACCAGGAACCAGGCGTGATGAGTGCAGAT
CGGCTGGAAGGCGTTATGCGCCTGACACCGGCGTTGGGGCAGCAAAAACTTTATGTTCTGGTCTTTACCA
CGGAAAAAGATCTCCAGCAGACGACCCAACTGCTCGACCCGGCTAAAGCCTATGCCAAGGGCGTCGGTAA
CTCGATCCCGGATATCCCCGATCCGGTTGCTCGTCATACCACCGATGGCTTACTGAAACTGAAAGTGAAA
ACGAACTCCAGCTCCAGCGTGTTGGTAGGACCTTTATTTGGTTCTTCCGCTCCAGCTCCGGTTACGGTAG
GTAACACGGCGGCACCAGCTGTGGCTGCACCCGCTCCGGCACCGGTGAAGAAAAGCGAGCCGATGCTCAA
CGACACGGAAAGTTATTTTAATACCGCGATCAAAAACGCTGTCGCGAAAGGTGATGTTGATAAGGCGTTA
AAACTGCTTGATGAAGCTGAACGCCTGGGATCGACATCTGCCCGTTCCACCTTTATCAGCAGTGTAAAAG
GCAAGGGGTAA
# Upstream_100_bases:
AGGTTGTCATTATCTGAAAGGGGCGAAAGCCCCTCTGATTATCGGGTTTAGCGCGCTATTGCCTGGCTAC
CGCTGAGCTCCAGATTTTGAGGTGAAAACA
# Blattner_No_Ontology:
Carbon compound catabolism
# Gene_Position:
4247577-4248497 (Clockwise)
# Centisome_Position:
91.549
# Gene_Name:
malM or molA
# GC_Content:
53.42%
# Metabolic_Importance:
Non_Essential
# Preceding_Gene:
lamB
# Following_Gene:
yjbI
# Operon_Status:
Yes
# Operon_Components:
malK_lamB_malM Ref: Center for Information Biology and DNA Data Bank of Japan, National Institute of Genetics http://www.cib.nig.ac.jp/dda/taitoh/ecoli.operon.html
# Paralogues:
None
# Copy Number:
Unknown
# RNA_Copy_No.:
Log phase (2max): 0.3
Stationary phase (2max): 0.17
Ref: Nature Biotech., 18, 1262-68, Dec. 2000 (PMID=11101804)
# Genbank_ID_(DNA):
G1790470
# Genbank_ID_(Protein):
AAC77007.1
# SWISS_PROT_(AC_&_ID):
$ MALM_ECOLI (P03841)
# 2D_Gel_Image:
Not Available
# Other_Databases:
- ECOCYC: EG10559
- EcoGene: EG10559
- EMBL: J01648
- InterPro: IPR010794; IPR002885; IPR008940
- Pfam: PF07148
- PIR: A25787
# Pfam_Domain/Function:
PF07148 Maltose operon periplasmic protein precursor (MalM);
# Homologues:
Not Available
# Similarity:
To S.typhimurium malM.
# EC_Number:
Not Available
# No._of_Amino_Acids:
306 (Translated Protein)
280 (Mature Protein)
# Molecular_Weight:
31944 29359
# Theoretical_pI:
8.38
# Theoretical_pI (Mature):
5.98
# Sequence:
// MKMNKSLIVLCLSAGLLASAPGISLADVNYVPQNTSDAPAIPSAALQQLTWTPVDQSKTQ
// TTQLATGGQQLNVPGISGPVAAYSVPANIGELTLTLTSEVNKQTSVFAPNVLILDQNMTP
// SAFFPSSYFTYQEPGVMSADRLEGVMRLTPALGQQKLYVLVFTTEKDLQQTTQLLDPAKA
// YAKGVGNSIPDIPDPVARHTTDGLLKLKVKTNSSSSVLVGPLFGSSAPAPVTVGNTAAPA
// VAAPAPAPVKKSEPMLNDTESYFNTAIKNAVAKGDVDKALKLLDEAERLGSTSARSTFIS
// SVKGKG
// /\
// DVNYVPQNTSDAPAIPSAALQQLTWTPVDQSKTQTTQLATGGQQLNVPGISGPVAAYSVP
// ANIGELTLTLTSEVNKQTSVFAPNVLILDQNMTPSAFFPSSYFTYQEPGVMSADRLEGVM
// RLTPALGQQKLYVLVFTTEKDLQQTTQLLDPAKAYAKGVGNSIPDIPDPVARHTTDGLLK
// LKVKTNSSSSVLVGPLFGSSAPAPVTVGNTAAPAVAAPAPAPVKKSEPMLNDTESYFNTA
// IKNAVAKGDVDKALKLLDEAERLGSTSARSTFISSVKGKG
# PROSITE_Motif:
Not Available
# Important_Sites:
Signal Chain 1 22
Signal Chain 1 26
# Transmembrane:
Not Available
# Cys/Met_Content:
0.3 %Cys (Translated Protein)
2.0 %Met (Translated Protein)
2.3 %Cys+Met (Translated Protein)
0.0 %Cys (Mature Protein)
1.4 %Met (Mature Protein)
1.4 %Cys+Met (Mature Protein)
# Secondary_Structure:
>MALM_ECOLI (Translated Protein)
MKMNKSLIVLCLSAGLLASAPGISLADVNYVPQNTSDAPAIPSAALQQLTWTPVDQSKTQ
CCCCHHHHHHHHHHHHHHCCCCCCEEEEECCCCCCCCCCCCHHHHHHCEEEEECCCCCCC
TTQLATGGQQLNVPGISGPVAAYSVPANIGELTLTLTSEVNKQTSVFAPNVLILDQNMTP
EEEEEECCEEEECCCCCCCEEEEECCCCCCCEEEEEECCCCCCCCEECCEEEEECCCCCE
SAFFPSSYFTYQEPGVMSADRLEGVMRLTPALGQQKLYVLVFTTEKDLQQTTQLLDPAKA
EEEECCEEEEEECCCCEECCEEEEEEEECCCCCCEEEEEEEECCCHHHHHHHHCCCHHHH
YAKGVGNSIPDIPDPVARHTTDGLLKLKVKTNSSSSVLVGPLFGSSAPAPVTVGNTAAPA
HHHHCCCCCCCCCCCCCCCCCCEEEEEEECCCCCCCEECCEEEECCCCCCEECCCCCCCC
VAAPAPAPVKKSEPMLNDTESYFNTAIKNAVAKGDVDKALKLLDEAERLGSTSARSTFIS
CCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHCCCHHHHHHHE
SVKGKG
ECCCCC
/\
>MALM_ECOLI (Mature Protein[1])
ISLADVNYVPQNTSDAPAIPSAALQQLTWTPVDQSKTQTTQLATGGQQLNVPGISGPVAA
CCEEEEECCCCCCCCCCCCHHHHHHCEEEEECCCCCCCEEEEEECCEEEECCCCCCCEEE
YSVPANIGELTLTLTSEVNKQTSVFAPNVLILDQNMTPSAFFPSSYFTYQEPGVMSADRL
EECCCCCCCEEEEEECCCCCCCCEECCEEEEECCCCCEEEEECCEEEEEECCCCEECCEE
EGVMRLTPALGQQKLYVLVFTTEKDLQQTTQLLDPAKAYAKGVGNSIPDIPDPVARHTTD
EEEEEECCCCCCEEEEEEEECCCHHHHHHHHCCCHHHHHHHHCCCCCCCCCCCCCCCCCC
GLLKLKVKTNSSSSVLVGPLFGSSAPAPVTVGNTAAPAVAAPAPAPVKKSEPMLNDTESY
EEEEEEECCCCCCCEECCEEEECCCCCCEECCCCCCCCCCCCCCCCCCCCCCCCCCHHHH
FNTAIKNAVAKGDVDKALKLLDEAERLGSTSARSTFISSVKGKGECCCCC
HHHHHHHHHHHCCHHHHHHHHHHHHHHCCCHHHHHHHE
/\
>MALM_ECOLI (Mature Protein[2])
DVNYVPQNTSDAPAIPSAALQQLTWTPVDQSKTQTTQLATGGQQLNVPGISGPVAAYSVP
EEECCCCCCCCCCCCHHHHHHCEEEEECCCCCCCEEEEEECCEEEECCCCCCCEEEEECC
ANIGELTLTLTSEVNKQTSVFAPNVLILDQNMTPSAFFPSSYFTYQEPGVMSADRLEGVM
CCCCCEEEEEECCCCCCCCEECCEEEEECCCCCEEEEECCEEEEEECCCCEECCEEEEEE
RLTPALGQQKLYVLVFTTEKDLQQTTQLLDPAKAYAKGVGNSIPDIPDPVARHTTDGLLK
EECCCCCCEEEEEEEECCCHHHHHHHHCCCHHHHHHHHCCCCCCCCCCCCCCCCCCEEEE
LKVKTNSSSSVLVGPLFGSSAPAPVTVGNTAAPAVAAPAPAPVKKSEPMLNDTESYFNTA
EEECCCCCCCEECCEEEECCCCCCEECCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHH
IKNAVAKGDVDKALKLLDEAERLGSTSARSTFISSVKGKG
HHHHHHHCCHHHHHHHHHHHHHHCCCHHHHHHHEECCCCC
# PDB_Accession:
& Not Available
# Resolution:
Not Available
# Structure_CLASS:
Alpha Beta
# Quaternary_Structure:
Not Available
# Interacting_Partners:
Unknown
# Cofactors:
Not Available
# Metals_Ions:
Not Available
# Kcat_Value_[1/min]:
Not Available
# Specific_Activity_[micromol/min/mg]:
Not Available
# Km_Value_[mM]:
Not Available
# Substrates:
Not Available
# Products:
Not Available
# Specific_Reaction:
Not Available
# General_Reaction:
Not Available
# Inhibitor:
Not Available
# Priority:
5.9
# Status:
Not Available
# Availability:
Not Available
#END_ECARDFILE
#BEGIN_ECARDFILE
# Entry_ID:
CC3458A.1
# Accession_No.:
UA0003458
# Name:
UPF0304 protein yfbU
# Alternate_Names:
Not Available
# General_Function:
Unknown
# COG_Function:
Function unknown (code S)
# COG_ID:
COG3013 Uncharacterized conserved protein (Evalue = 6e-94)
# Specific_Function:
Genes yfbU-yfbT are regulated by attenuation.
# Riley_Gene_Function:
conserved hypothetical protein
# Riley_Cell_Function:
>>>
Not Available
# Gene_Ontology:
>>>
Function: Not Available
||
>>>
Process: Not Available
||
>>>
Component: Not Available
# Location:
Cytoplasm
# Blattner_Number:
b2294
# Gene_Sequence:
ATGGAAATGACCAACGCGCAACGTCTTATTTTGTCTAATCAGTACAAGATGATGACTATGCTCGATCCGG
CAAATGCTGAACGTTACCGTCGCCTGCAAACAATTATTGAGCGTGGTTACGGATTACAGATGCGTGAATT
GGATCGCGAGTTTGGCGAGCTGAAAGAAGAAACCTGCCGCACTATCATCGACATTATGGAGATGTATCAT
GCGTTGCATGTTTCCTGGTCTAATTTGCAGGACCAGCAATCCATCGATGAACGTCGTGTCACCTTCCTCG
GCTTTGACGCCGCCACTGAAGCACGTTACCTCGGTTATGTCCGCTTTATGGTTAATGTGGAAGGGCGCTA
TACCCATTTTGACGCCGGAACTCACGGTTTTAACGCCCAGACGCCAATGTGGGAAAAATATCAGCGCATG
CTTAATGTGTGGCATGCCTGCCCGCGTCAGTACCATTTGAGCGCCAACGAAATTAATCAAATTATCAATG
CCTGA
# Upstream_100_bases:
TTCCTTGATGATTTGTAATTGACCCCTGATTACGCATATAAAAGAAGGCATACTCAGCCTTCTTTTTTTT
CACCGTAGTAGAGTGATACAGGAGTCAACA
# Blattner_No_Ontology:
Hypothetical, unclassified, unknown
# Gene_Position:
2410122-2410616 (Counter Clockwise)
# Centisome_Position:
51.957
# Gene_Name:
yfbU
# GC_Content:
47.68%
# Metabolic_Importance:
Unknown
# Preceding_Gene:
yfbT
# Following_Gene:
yfbV
# Operon_Status:
Yes
# Operon_Components:
yfbT yfbU Ref: RegulonDB http://kinich.cifn.unam.mx:8850/db/regulondb_cgi.query_simple?v_organism=ECK12&v_table=3&v_name=yfbU
# Paralogues:
None
# Copy Number:
Unknown
# RNA_Copy_No.:
Log phase (2max): 0.06
Stationary phase (2max): 0.18
Ref: Nature Biotech., 18, 1262-68, Dec. 2000 (PMID=11101804)
# Genbank_ID_(DNA):
G1788631
# Genbank_ID_(Protein):
AAC75354.1
# SWISS_PROT_(AC_&_ID):
$ YFBU_ECOLI (P0A8W8)
# 2D_Gel_Image:
Not Available
# Other_Databases:
- ECOCYC: EG14105
- EcoGene: EG14105
- EMBL: U00096
- InterPro: IPR005587
- Pfam: PF03887
# Pfam_Domain/Function:
PF03887 YfbU domain;
# Homologues:
Not Available
# Similarity:
Belongs to the UPF0304 family.
# EC_Number:
Not Available
# No._of_Amino_Acids:
164 (Translated Protein)
164 (Mature Protein)
# Molecular_Weight:
19537 19537
# Theoretical_pI:
6.51
# Theoretical_pI (Mature):
6.51
# Sequence:
// MEMTNAQRLILSNQYKMMTMLDPANAERYRRLQTIIERGYGLQMRELDREFGELKEETCR
// TIIDIMEMYHALHVSWSNLQDQQSIDERRVTFLGFDAATEARYLGYVRFMVNVEGRYTHF
// DAGTHGFNAQTPMWEKYQRMLNVWHACPRQYHLSANEINQIINA
// /\
// MEMTNAQRLILSNQYKMMTMLDPANAERYRRLQTIIERGYGLQMRELDREFGELKEETCR
// TIIDIMEMYHALHVSWSNLQDQQSIDERRVTFLGFDAATEARYLGYVRFMVNVEGRYTHF
// DAGTHGFNAQTPMWEKYQRMLNVWHACPRQYHLSANEINQIINA
# PROSITE_Motif:
Not Available
# Important_Sites:
Not Available
# Transmembrane:
Not Available
# Cys/Met_Content:
1.2 %Cys (Translated Protein)
6.7 %Met (Translated Protein)
7.9 %Cys+Met (Translated Protein)
1.2 %Cys (Mature Protein)
6.7 %Met (Mature Protein)
7.9 %Cys+Met (Mature Protein)
# Secondary_Structure:
>YFBU_ECOLI (Translated Protein)
MEMTNAQRLILSNQYKMMTMLDPANAERYRRLQTIIERGYGLQMRELDREFGELKEETCR
CCCCHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHCCCCCCHHHHCCCCCCCCHHHCC
TIIDIMEMYHALHVSWSNLQDQQSIDERRVTFLGFDAATEARYLGYVRFMVNVEGRYTHF
CHHHHHHHHHHHCCCCCCHHHHHCCCCCCEEEEECCHHHHHHHHHHHHHHHCCCCHHHHH
DAGTHGFNAQTPMWEKYQRMLNVWHACPRQYHLSANEINQIINA
HCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCCCCHHHHHHHHCC
/\
>YFBU_ECOLI (Mature Protein)
EMTNAQRLILSNQYKMMTMLDPANAERYRRLQTIIERGYGLQMRELDREFGELKEETCRT
CCCHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHCCCCCCHHHHCCCCCCCCHHHCCC
IIDIMEMYHALHVSWSNLQDQQSIDERRVTFLGFDAATEARYLGYVRFMVNVEGRYTHFD
HHHHHHHHHHHCCCCCCHHHHHCCCCCCEEEEECCHHHHHHHHHHHHHHHCCCCHHHHHH
AGTHGFNAQTPMWEKYQRMLNVWHACPRQYHLSANEINQIINA
CCCCCCCCCCCCHHHHHHHHHHHHHHCCCCCCCHHHHHHHHCC
# PDB_Accession:
& 1WPB
# Resolution:
Not Available
# Structure_CLASS:
Mainly Alpha
# Quaternary_Structure:
Not Available
# Interacting_Partners:
Not Available
# Cofactors:
Not Available
# Metals_Ions:
Not Available
# Kcat_Value_[1/min]:
Not Available
# Specific_Activity_[micromol/min/mg]:
Not Available
# Km_Value_[mM]:
Not Available
# Substrates:
Not Available
# Products:
Not Available
# Specific_Reaction:
Not Available
# General_Reaction:
Not Available
# Inhibitor:
Not Available
# Priority:
9.4
# Status:
Selected, Cloned, Expressed, Soluble, Purified, Crystallized, Work Stopped
# Availability:
Midwest Center for Structural Genomics
#END_ECARDFILE
#BEGIN_ECARDFILE
# Entry_ID:
CC4142A.1
# Accession_No.:
UA0004142
# Name:
Protein yccU
# Alternate_Names:
Not Available
# General_Function:
NAD(P)-binding Rossmann-fold domains
# COG_Function:
General function prediction only (code R)
# COG_ID:
COG1832 Predicted CoA-binding protein (Evalue = 1e-73)
# Specific_Function:
Not Available
# Riley_Gene_Function:
putative NAD(P)-binding enzyme; predicted CoA-binding protein with NAD(P)-binding Rossmann-fold domain
# Riley_Cell_Function:
>>>
Not Available
# Gene_Ontology:
>>>
Function: Not Available
||
>>>
Process: Not Available
||
>>>
Component: Not Available
# Location:
Not Available
# Blattner_Number:
b0965
# Gene_Sequence:
ATGAAAGAAACCGATATTGCAGGCATTTTAACGTCCACTCACACCATTGCGCTGGTGGGGGCAAGCGACA
AACCCGATCGTCCCAGCTATCGCGTGATGAAATATCTACTCGACCAGGGGTATCACGTCATTCCGGTTTC
GCCAAAAGTTGCCGGCAAAACGCTGCTGGGCCAGAAGGGGTATGGCACGCTGGCAGACGTTCCGGAAAAA
GTCGATATGGTCGATGTTTTCCGTAATTCAGAAGCGGCGTGGGGCGTGGCACAGGAAGCTATTGCCATTG
GCGCGAAAACTCTCTGGATGCAACTGGGGGTGATTAATGAGCAAGCGGCAGTACTGGCACGGGATGCCGG
GTTAAATGTGGTGATGGATCGCTGCCCGGCTATTGAGATCCCTCGCCTGGGCCTGGCCAAATAA
# Upstream_100_bases:
ATAGACATATTTCCCGCTTTTGCTCTCATTCATTCGTATTAGCTGCATGGTTGGCATGTCGGCTTTGTCG
TACACTTTGTTAAACAGTCTGGAGGAAATA
# Blattner_No_Ontology:
Hypothetical, unclassified, unknown
# Gene_Position:
1027169-1027582 (Clockwise)
# Centisome_Position:
22.139
# Gene_Name:
yccU
# GC_Content:
54.35%
# Metabolic_Importance:
Unknown
# Preceding_Gene:
yccT
# Following_Gene:
yccV
# Operon_Status:
No
# Operon_Components:
None
# Paralogues:
None
# Copy Number:
Not Available
# RNA_Copy_No.:
Not Available
# Genbank_ID_(DNA):
D90734
# Genbank_ID_(Protein):
BAA35730.1
# SWISS_PROT_(AC_&_ID):
$ YCCU_ECOLI (P75874)
# 2D_Gel_Image:
Not Available
# Other_Databases:
- ECOCYC: EG13723
- EcoGene: EG13723
- EMBL: U00096
- InterPro: IPR003781
- Pfam: PF02629
# Pfam_Domain/Function:
PF02629 CoA binding domain
# Homologues:
Not Available
# Similarity:
Not Available
# EC_Number:
Not Available
# No._of_Amino_Acids:
137 (Translated Protein)
137 (Mature Protein)
# Molecular_Weight:
14701 14701
# Theoretical_pI:
7.51
# Theoretical_pI (Mature):
7.51
# Sequence:
// MKETDIAGILTSTHTIALVGASDKPDRPSYRVMKYLLDQGYHVIPVSPKVAGKTLLGQKG
// YGTLADVPEKVDMVDVFRNSEAAWGVAQEAIAIGAKTLWMQLGVINEQAAVLARDAGLNV
// VMDRCPAIEIPRLGLAK
// /\
// MKETDIAGILTSTHTIALVGASDKPDRPSYRVMKYLLDQGYHVIPVSPKVAGKTLLGQKG
// YGTLADVPEKVDMVDVFRNSEAAWGVAQEAIAIGAKTLWMQLGVINEQAAVLARDAGLNV
// VMDRCPAIEIPRLGLAK
# PROSITE_Motif:
Hypothetical hesB/yadR/yfhF family signature.
F-x-[LIVMFY]-x-N-[PG]-[NSKQ]-x(4)-C-x-C-[GS]-x-S-F.
# Important_Sites:
Not Available
# Transmembrane:
Not Available
# Cys/Met_Content:
0.7 %Cys (Translated Protein)
3.6 %Met (Translated Protein)
4.4 %Cys+Met (Translated Protein)
0.7 %Cys (Mature Protein)
3.6 %Met (Mature Protein)
4.4 %Cys+Met (Mature Protein)
# Secondary_Structure_(PDB):
MNDQELRAYLSQAKTIAVLGAHKDPSRPAHYVPRYLREQGYRVLPVNPRFQ
CCHHHHHHHHHHCEEEEEECCCCCCCCHHHHHHHHHHHHCEEEEEEECCCC
GEELFGEEAVASLLDLKEPVDILDVFRPPSALMDHLPEVLALRPGLVWLQS
CCCCCCEEEECCCCCCCCEEEEEEEECCCCCCCCHHHHHHHHCEEEEEEEC
GIRHPEFEKALKEAGIPVVADRCLMVEHKRLFRG
CCCCHHHHHHHHHHCEEEEECCCHHHHHHHHCCC
# PDB_Accession:
& Model Based on 1IUK (1-136)
# Resolution:
Not Available
# Structure_CLASS:
Alpha Beta
# Quaternary_Structure:
Not Available
# Interacting_Partners:
Not Available
# Cofactors:
Not Available
# Metals_Ions:
Not Available
# Kcat_Value_[1/min]:
Not Available
# Specific_Activity_[micromol/min/mg]:
Not Available
# Km_Value_[mM]:
Not Available
# Substrates:
Not Available
# Products:
Not Available
# Specific_Reaction:
Not Available
# General_Reaction:
Not Available
# Inhibitor:
Not Available
# Priority:
1.0
# Status:
Selected, Cloned
# Availability:
Montreal-Kingston Bacterial Structural Genomics Initiative
#END_ECARDFILE
#BEGIN_ECARDFILE
# Entry_ID:
CC3942A.1
# Accession_No.:
UA0003942
# Name:
Hypothetical protein ypjF
# Alternate_Names:
Not Available
# General_Function:
Not Available
# COG_Function:
Carbohydrate transport and metabolism (code G)
# COG_ID:
COG1803 Methylglyoxal synthase (Evalue = 1e-57)
# Specific_Function:
Not Available
# Riley_Gene_Function:
CP4-57 prophage; toxin of the YpjF-YfjZ toxin-antitoxin system
# Riley_Cell_Function:
>>>
extrachromosomal
Prophage genes and phage related functions
# Gene_Ontology:
>>>
Function: Not Available
||
>>>
Process: Not Available
||
>>>
Component: Not Available
# Location:
Cytoplasm
# Blattner_Number:
b2646
# Gene_Sequence:
ATGAACACTCTACCTGCTACAATTTCGCAGGCGGCGAAGCCCTGCCTGTCGCCAGTGGCTGTCTGGCAAA
TGCTACTGACACGCCTGCTGGAACAACACTATGGCCTGACACTGAACGACACGCCGTTCAGTGATGAAAC
TGTTATTAAGGAACATATCGATGCTGGTATCACTCTGGCCGATGCAGTCAATTTTCTGGTGGAAAAGTAC
GAACTGGTACGTATCGATCACAGAGGATTTTCGTGGCAACAACAGTCTCCATATATTTCCGTAGTAGATA
TTCTGCGAGCAAGGCGCTCTACCGGCTTGCTAAAAACTAATGTGAAATAA
# Upstream_100_bases:
ACAACGGTTTTACCTGCGAAGCCGATACTCTTGGTAGTTGCGGCTACGTATACATCGCTGTTTACCCCAC
TCAACGCTAACTAATTTCACGAGAGCAAGC
# Blattner_No_Ontology:
Hypothetical, unclassified, unknown
# Gene_Position:
2775475-2775804 (Clockwise)
# Centisome_Position:
59.820
# Gene_Name:
ypjF
# GC_Content:
47.58%
# Metabolic_Importance:
Unknown
# Preceding_Gene:
yfjZ
# Following_Gene:
ypjA
# Operon_Status:
Yes
# Operon_Components:
yfjZ_ypjF Ref: RegulonDB http://kinich.cifn.unam.mx:8850/db/regulondb_cgi.query_simple?v_organism=ECK12&v_table=3&v_name=ypjF
# Paralogues:
b0245 (ykfI) 80; b2005 (yeeV) 65;
# Copy Number:
Unknown
# RNA_Copy_No.:
Log phase (2max): 0.04
Stationary phase (2max): 0.05
Ref: Nature Biotech., 18, 1262-68, Dec. 2000 (PMID=11101804)
# Genbank_ID_(DNA):
G1788999
# Genbank_ID_(Protein):
AAC75694.1
# SWISS_PROT_(AC_&_ID):
$ YPJF_ECOLI (Q46953)
# 2D_Gel_Image:
Not Available
# Other_Databases:
- ECOCYC: EG14284
- EcoGene: EG14284
- EMBL: U36840
- InterPro: IPR009610
- Pfam: PF06755
- PIR: T08657
# Pfam_Domain/Function:
PF06755 Protein of unknown function (DUF1219);
# Homologues:
Not Available
# Similarity:
To E.coli yeeV and ykfI.
# EC_Number:
Not Available
# No._of_Amino_Acids:
109 (Translated Protein)
109 (Mature Protein)
# Molecular_Weight:
12308 12308
# Theoretical_pI:
7.61
# Theoretical_pI (Mature):
7.61
# Sequence:
// MNTLPATISQAAKPCLSPVAVWQMLLTRLLEQHYGLTLNDTPFSDETVIKEHIDAGITLA
// DAVNFLVEKYELVRIDHRGFSWQQQSPYISVVDILRARRSTGLLKTNVK
// /\
// MNTLPATISQAAKPCLSPVAVWQMLLTRLLEQHYGLTLNDTPFSDETVIKEHIDAGITLA
// DAVNFLVEKYELVRIDHRGFSWQQQSPYISVVDILRARRSTGLLKTNVK
# PROSITE_Motif:
Not Available
# Important_Sites:
Not Available
# Transmembrane:
Not Available
# Cys/Met_Content:
0.9 %Cys (Translated Protein)
1.8 %Met (Translated Protein)
2.8 %Cys+Met (Translated Protein)
0.9 %Cys (Mature Protein)
1.8 %Met (Mature Protein)
2.8 %Cys+Met (Mature Protein)
# Secondary_Structure:
>YPJF_ECOLI (Translated Protein)
MNTLPATISQAAKPCLSPVAVWQMLLTRLLEQHYGLTLNDTPFSDETVIKEHIDAGITLA
CCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHCCEEECCCCCCCHHHHHHHHHHHHHHH
DAVNFLVEKYELVRIDHRGFSWQQQSPYISVVDILRARRSTGLLKTNVK
HHHHHHHHHHHEEEECCCCCCCCCCCCCHHHHHHHCCCCCCCCEECCCC
/\
>YPJF_ECOLI (Mature Protein)
NTLPATISQAAKPCLSPVAVWQMLLTRLLEQHYGLTLNDTPFSDETVIKEHIDAGITLAD
CCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHCCEEECCCCCCCHHHHHHHHHHHHHHHH
AVNFLVEKYELVRIDHRGFSWQQQSPYISVVDILRARRSTGLLKTNVK
HHHHHHHHHHEEEECCCCCCCCCCCCCHHHHHHHCCCCCCCCEECCCC
# PDB_Accession:
& Not Available
# Resolution:
Not Available
# Structure_CLASS:
Mainly Alpha
# Quaternary_Structure:
Not Available
# Interacting_Partners:
Not Available
# Cofactors:
Not Available
# Metals_Ions:
Not Available
# Kcat_Value_[1/min]:
Not Available
# Specific_Activity_[micromol/min/mg]:
Not Available
# Km_Value_[mM]:
Not Available
# Substrates:
Not Available
# Products:
Not Available
# Specific_Reaction:
Not Available
# General_Reaction:
Not Available
# Inhibitor:
Not Available
# Priority:
9.4
# Status:
Selected, Cloned, Expressed, Soluble, Purified
# Availability:
Northeast Structural Genomics Consortium
#END_ECARDFILE
#BEGIN_ECARDFILE
# Entry_ID:
CC0971A.1
# Accession_No.:
UA0000971
# Name:
Respiratory nitrate reductase 2 gamma chain
# Alternate_Names:
Not Available
# General_Function:
Energy metabolism; Member of the Prokaryotic Molybdopterin-containing Oxidoreductase (PMO) Family
# COG_Function:
Energy production and conversion (code C)
# COG_ID:
COG2181 Nitrate reductase gamma subunit (Evalue = 1e-131)
# Specific_Function:
This is a second nitrate reductase enzyme which can substitute for the NRA enzyme and allows E.coli to use nitrate as an electron acceptor during anaerobic growth. The gamma chain is a membrane-embedded heme-iron unit resembling cytochrome b, which transfers electrons from quinones to the beta subunit.
# Riley_Gene_Function:
nitrate reductase 2, gamma subunit
# Riley_Cell_Function:
>>>
Metabolism
Energy metabolism (carbon)
Anaerobic respiration
||
>>>
Metabolism
Energy production/transport
Electron acceptor
||
>>>
Cell structure
Membrane
||
>>>
Location of gene products
Inner membrane
# Gene_Ontology:
>>>
Function: catalytic activity
Function: oxidoreductase activity
Function: oxidoreductase activity, acting on other nitrogenous compounds as donors
Function: nitrate reductase activity
||
>>>
Process: physiological process
Process: metabolism
Process: cellular metabolism
Process: generation of precursor metabolites and energy
Process: electron transport
||
>>>
Process: cellular physiological process
Process: transport
Process: electron transport
||
>>>
Process: cellular metabolism
Process: generation of precursor metabolites and energy
Process: electron transport
||
>>>
Process: localization
Process: establishment of localization
Process: transport
Process: electron transport
||
>>>
Process: cellular process
Process: cellular physiological process
Process: transport
Process: electron transport
||
>>>
Process: cellular metabolism
Process: generation of precursor metabolites and energy
Process: electron transport
||
>>>
Component: protein complex
Component: unlocalized protein complex
Component: nitrate reductase complex
# Location:
Integral Membrane Protein
# Blattner_Number:
b1465
# Gene_Sequence:
ATGATTCAGTATCTGAACGTCTTTTTTTACGATATCTACCCGTACATTTGTGCGACGGTGTTTTTCCTCG
GCAGCTGGCTGCGCTACGACTACGGGCAGTACACCTGGCGCGCCTCCTCAAGTCAAATGCTCGATAAACG
CGGGATGGTGATATGGTCGAATCTGTTCCATATCGGCATTTTGGGGATTTTCTTCGGGCACTTGTTCGGC
ATGTTAACGCCGCACTGGATGTACGCGTGGTTTTTGCCAGTGGCAGCGAAACAACTCATGGCGATGGTGC
TCGGCGGTATTTGCGGTGTGTTGACGTTGATTGGCGGCGCAGGACTGCTGTGGCGCAGGCTGACAAATCA
GCGCGTGCGTGCCACTTCCACTACGCCGGATATCATCATCATGAGCATTTTGCTGATCCAGTGTCTGTTG
GGGCTAAGTACCATACCGTTTTCAGCACAGTATCCTGATGGTAGCGAAATGATGAAGCTGGTGGGTTGGG
CGCAAAGCATTGTCACTTTCCGTGGTGGATCGTCAGAGATGCTCAACGGCGTAGCGTTCGTCTTCCGCCT
GCATCTGGTGTTGGGAATGACCATCTTCCTGCTCTTCCCGTTCACCCGACTGGTGCATGTGTGGAGCGCG
CCGTTTGAGTACTTTACTCGTCGATATCAAATTGTGCGTTCGCGGCGATAA
# Upstream_100_bases:
ACGCCACGGCGTGTGACAGCTCGCCGCTTAATCAATATCAGCGACGCTTTAGCCAGGATGTCGCGCCGCA
ATATGTCGACATCAGTGCGGGAGGTGGGAA
# Blattner_No_Ontology:
Energy metabolism
# Gene_Position:
1533961-1534641 (Counter Clockwise)
# Centisome_Position:
33.076
# Gene_Name:
narV
# GC_Content:
52.72%
# Metabolic_Importance:
Non_Essential
# Preceding_Gene:
yddE
# Following_Gene:
narW
# Operon_Status:
Yes
# Operon_Components:
narV_narW_narY_narZ Ref: RegulonDB http://kinich.cifn.unam.mx:8850/db/regulondb_cgi.query_simple?v_organism=ECK12&v_table=3&v_name=narV
# Paralogues:
b1227 (narI) 71;
# Copy Number:
Unknown
# RNA_Copy_No.:
Log phase (2max): 27.88
Stationary phase (2max): 0.16
Ref: Nature Biotech., 18, 1262-68, Dec. 2000 (PMID=11101804)
# Genbank_ID_(DNA):
G1787738
# Genbank_ID_(Protein):
AAC74547.1
# SWISS_PROT_(AC_&_ID):
$ NARV_ECOLI (P0AF32)
# 2D_Gel_Image:
Not Available
# Other_Databases:
- ECOCYC: EG10644
- EcoGene: EG10644
- EMBL: X17110
- InterPro: IPR003816
- Pfam: PF02665
- PIR: S11430
# Pfam_Domain/Function:
PF02665 Nitrate reductase gamma subunit;
# Homologues:
Not Available
# Similarity:
Not Available
# EC_Number:
1.7.99.4
# No._of_Amino_Acids:
226 (Translated Protein)
226 (Mature Protein)
# Molecular_Weight:
26018 26018
# Theoretical_pI:
10.11
# Theoretical_pI (Mature):
10.11
# Sequence:
// MIQYLNVFFYDIYPYICATVFFLGSWLRYDYGQYTWRASSSQMLDKRGMVIWSNLFHIGI
// LGIFFGHLFGMLTPHWMYAWFLPVAAKQLMAMVLGGICGVLTLIGGAGLLWRRLTNQRVR
// ATSTTPDIIIMSILLIQCLLGLSTIPFSAQYPDGSEMMKLVGWAQSIVTFRGGSSEMLNG
// VAFVFRLHLVLGMTIFLLFPFTRLVHVWSAPFEYFTRRYQIVRSRR
// /\
// MIQYLNVFFYDIYPYICATVFFLGSWLRYDYGQYTWRASSSQMLDKRGMVIWSNLFHIGI
// LGIFFGHLFGMLTPHWMYAWFLPVAAKQLMAMVLGGICGVLTLIGGAGLLWRRLTNQRVR
// ATSTTPDIIIMSILLIQCLLGLSTIPFSAQYPDGSEMMKLVGWAQSIVTFRGGSSEMLNG
// VAFVFRLHLVLGMTIFLLFPFTRLVHVWSAPFEYFTRRYQIVRSRR
# PROSITE_Motif:
Not Available
# Important_Sites:
Not Available
# Transmembrane:
Transmembrane 5 30 1 (By similarity)
Transmembrane 49 71 2 (By similarity)
Transmembrane 84 113 3 (By similarity)
Transmembrane 126 149 4 (By similarity)
Transmembrane 184 199 5 (By similarity)
# Cys/Met_Content:
1.3 %Cys (Translated Protein)
5.3 %Met (Translated Protein)
6.6 %Cys+Met (Translated Protein)
1.3 %Cys (Mature Protein)
5.3 %Met (Mature Protein)
6.6 %Cys+Met (Mature Protein)
# Secondary_Structure:
>NARV_ECOLI (Translated Protein)
MIQYLNVFFYDIYPYICATVFFLGSWLRYDYGQYTWRASSSQMLDKRGMVIWSNLFHIGI
CCCCCCHHHHHHHHHHHHHHHHHHHHCCCEECCCEEEECHHHHHHCCCHHHHHHHHHHHH
ILGIFFGHLFGMLTPHWMYAWFLPVAAKQLMAMVLGGICGVLTLIGGAGLLWRRLTNQRV
HHHHHHHHHCCCCCHHHHHHHHCCHHHHCCCHHHHHHHHHHHHHHHHHHHHCCCCCCCHH
VRATSTTPDIIIMSILLIQCLLGLSTIPFSAQYPDGSEMMKLVGWAQSIVTFRGGSSEML
HHCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHCCCHHHHC
LNGVAFVFRLHLVLGMTIFLLFPFTRLVHVWSAPFEYFTRRYQIVRSRR
CCCHHHHHHHHHHHHHHHHHHHHCCCEEEEEEECHHHCEECEEEEEECC
/\
>NARV_ECOLI (Mature Protein)
IQYLNVFFYDIYPYICATVFFLGSWLRYDYGQYTWRASSSQMLDKRGMVIWSNLFHIGIL
CCCCCHHHHHHHHHHHHHHHHHHHHCCCEECCCEEEECHHHHHHCCCHHHHHHHHHHHHH
LGIFFGHLFGMLTPHWMYAWFLPVAAKQLMAMVLGGICGVLTLIGGAGLLWRRLTNQRVR
HHHHHHHHCCCCCHHHHHHHHCCHHHHCCCHHHHHHHHHHHHHHHHHHHHCCCCCCCHHH
RATSTTPDIIIMSILLIQCLLGLSTIPFSAQYPDGSEMMKLVGWAQSIVTFRGGSSEMLN
HCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHCCCHHHHCC
NGVAFVFRLHLVLGMTIFLLFPFTRLVHVWSAPFEYFTRRYQIVRSRR
CCHHHHHHHHHHHHHHHHHHHHCCCEEEEEEECHHHCEECEEEEEECC
# PDB_Accession:
& Not Available
# Resolution:
Not Available
# Structure_CLASS:
Mainly Alpha
# Quaternary_Structure:
heterotetrameric ABC2 complex of narZ and narY and narV (2x)
# Interacting_Partners:
1) narZ, 2) narY, 3) narV,
# Cofactors:
--cytochrome b --heme b --iron-sulfur centre --molybdopterin --molybdopterin guanine dinucleotide --more
# Metals_Ions:
--iron --iron-sulfur centre --molybdenum
# Kcat_Value_[1/min]:
68
# Specific_Activity_[micromol/min/mg]:
Not Available
# Km_Value_[mM]:
0.057 {LPCH2}
0.282 {pbh2}
# Substrates:
H+ + Nitrate + Ubiquinol-8
# Products:
H+ (Extracellular) + H2O + Nitrite + Ubiquinone-8
# Specific_Reaction:
(2) H+ + Nitrate + Ubiquinol-8 --> (2) H+ (Extracellular) + H2O + Nitrite + Ubiquinone-8
# General_Reaction:
Redox reaction;
# Inhibitor:
--2-n-heptyl-4-hydroxyquinoline N-oxide --ammonium sulfate --azide --cyanide --dicoumarol --diethyldicarbonate --dithiothreitol --ferricyanide --more --oxygen --sulfide
# Priority:
3.4
# Status:
Not Available
# Availability:
Not Available
#END_ECARDFILE
#BEGIN_ECARDFILE
# Entry_ID:
CC0475A.1
# Accession_No.:
UA0000475
# Name:
Nitrite reductase [NAD(P)H] large subunit
# Alternate_Names:
P
# General_Function:
Energy metabolism; FAD/NAD(P)-binding domain; Sulfite reductase, domains 1 and 3; FAD/NAD-linked reductases, dimerisation (C-terminal) domain; Sulfite reductase hemoprotein (SiRHP), domains 2 and 4
# COG_Function:
Energy production and conversion (code C)
# COG_ID:
COG1251 NAD(P)H-nitrite reductase (Evalue = 0.0)
# Specific_Function:
Not Available
# Riley_Gene_Function:
nitrite reductase, large subunit, nucleotide-binding
# Riley_Cell_Function:
>>>
Metabolism
Energy metabolism (carbon)
Anaerobic respiration
||
>>>
Location of gene products
Cytoplasm
# Gene_Ontology:
>>>
Function: binding
Function: ion binding
Function: cation binding
Function: transition metal ion binding
Function: iron ion binding
||
>>>
Function: metal ion binding
Function: transition metal ion binding
Function: iron ion binding
||
>>>
Function: binding
Function: ion binding
Function: cation binding
Function: transition metal ion binding
Function: iron ion binding
||
>>>
Function: metal ion binding
Function: transition metal ion binding
Function: iron ion binding
||
>>>
Function: catalytic activity
Function: oxidoreductase activity
Function: oxidoreductase activity, acting on other nitrogenous compounds as donors
Function: oxidoreductase activity, acting on other nitrogenous compounds as donors, with NAD or NADP as acceptor
Function: nitrite reductase [NAD(P)H] activity
||
>>>
Function: catalytic activity
Function: oxidoreductase activity
||
>>>
Function: catalytic activity
Function: oxidoreductase activity
Function: disulfide oxidoreductase activity
||
>>>
Process: physiological process
Process: metabolism
Process: cellular metabolism
Process: generation of precursor metabolites and energy
Process: electron transport
||
>>>
Process: cellular physiological process
Process: transport
Process: electron transport
||
>>>
Process: cellular metabolism
Process: generation of precursor metabolites and energy
Process: electron transport
||
>>>
Process: localization
Process: establishment of localization
Process: transport
Process: electron transport
||
>>>
Process: cellular process
Process: cellular physiological process
Process: transport
Process: electron transport
||
>>>
Process: cellular metabolism
Process: generation of precursor metabolites and energy
Process: electron transport
Process: physiological process
Process: metabolism
Process: cellular metabolism
Process: generation of precursor metabolites and energy
Process: electron transport
||
>>>
Process: cellular physiological process
Process: transport
Process: electron transport
||
>>>
Process: cellular metabolism
Process: generation of precursor metabolites and energy
Process: electron transport
||
>>>
Process: localization
Process: establishment of localization
Process: transport
Process: electron transport
||
>>>
Process: cellular process
Process: cellular physiological process
Process: transport
Process: electron transport
||
>>>
Process: cellular metabolism
Process: generation of precursor metabolites and energy
Process: electron transport
Process: physiological process
Process: metabolism
Process: nitrogen compound metabolism
Process: nitrate metabolism
Process: nitrate assimilation
Process: physiological process
Process: metabolism
Process: cellular metabolism
Process: generation of precursor metabolites and energy
Process: electron transport
||
>>>
Process: cellular physiological process
Process: transport
Process: electron transport
||
>>>
Process: cellular metabolism
Process: generation of precursor metabolites and energy
Process: electron transport
||
>>>
Process: localization
Process: establishment of localization
Process: transport
Process: electron transport
||
>>>
Process: cellular process
Process: cellular physiological process
Process: transport
Process: electron transport
||
>>>
Process: cellular metabolism
Process: generation of precursor metabolites and energy
Process: electron transport
Process: physiological process
Process: metabolism
Process: cellular metabolism
Process: generation of precursor metabolites and energy
Process: electron transport
||
>>>
Process: cellular physiological process
Process: transport
Process: electron transport
||
>>>
Process: cellular metabolism
Process: generation of precursor metabolites and energy
Process: electron transport
||
>>>
Process: localization
Process: establishment of localization
Process: transport
Process: electron transport
||
>>>
Process: cellular process
Process: cellular physiological process
Process: transport
Process: electron transport
||
>>>
Process: cellular metabolism
Process: generation of precursor metabolites and energy
Process: electron transport
||
>>>
Component: Not Available
# Location:
Cytoplasm
# Blattner_Number:
b3365
# Gene_Sequence:
ATGAGCAAAGTCAGACTCGCAATTATCGGTAACGGTATGGTCGGCCATCGCTTTATCGAAGATCTTCTTG
ATAAATCTGATGCGGCCAACTTTGATATTACCGTTTTCTGTGAAGAACCGCGCATCGCTTATGACCGCGT
ACACCTCTCGTCTTACTTCTCTCACCACACCGCCGAAGAGCTGTCGCTGGTGCGCGAAGGCTTCTACGAG
AAACACGGCATCAAAGTTCTGGTCGGCGAACGCGCTATCACCATCAACCGTCAGGAGAAGGTGATTCACT
CCAGCGCCGGACGTACCGTTTTTTATGACAAGCTGATCATGGCAACCGGTTCCTACCCGTGGATCCCGCC
AATCAAAGGTTCTGATACTCAGGACTGCTTTGTCTATCGCACTATTGAAGACCTCAACGCCATTGAATCC
TGCGCCCGTCGCAGCAAACGCGGTGCCGTTGTTGGTGGCGGCCTGTTAGGTCTGGAAGCCGCAGGCGCGC
TGAAAAACTTAGGTATTGAAACCCACGTTATCGAATTTGCCCCTATGCTGATGGCAGAACAGCTTGATCA
GATGGGCGGCGAGCAGCTGCGTCGCAAAATCGAAAGTATGGGCGTGCGCGTTCACACCAGCAAAAACACC
CTTGAGATTGTGCAGGAAGGTGTTGAAGCGCGTAAAACCATGCGTTTTGCCGACGGCAGCGAACTGGAAG
TCGACTTTATCGTCTTCTCTACCGGTATCCGTCCGCGCGATAAGCTGGCAACCCAGTGTGGTCTGGACGT
TGCTCCGCGTGGGGGTATTGTCATTAATGATTCCTGCCAGACTTCCGATCCGGATATCTACGCCATCGGT
GAATGCGCAAGCTGGAACAACCGTGTATTTGGTCTGGTAGCACCTGGCTACAAAATGGCGCAGGTCGCCG
TTGACCATATTCTCGGTAGCGAAAACGCCTTTGAAGGTGCTGACCTTAGCGCCAAGCTGAAACTGCTGGG
CGTAGACGTAGGCGGTATTGGTGATGCGCACGGTCGCACGCCTGGCGCACGTAGCTACGTTTACCTCGAC
GAAAGTAAAGAGATCTACAAACGCCTGATTGTCAGCGAAGACAACAAAACCCTGCTCGGTGCGGTACTGG
TGGGCGATACCAGCGACTACGGTAACCTGCTGCAACTGGTGCTGAACGCTATCGAACTGCCGGAAAACCC
GGATTCCCTGATCCTGCCAGCACACTCGGGTAGCGGCAAGCCGTCTATCGGTGTTGATAAACTGCCGGAC
AGCGCGCAAATCTGCTCCTGCTTCGACGTCACCAAAGGTGATCTGATTGCTGCCATCAACAAAGGCTGCC
ACACAGTTGCGGCGCTGAAAGCTGAAACCAAAGCGGGTACTGGCTGCGGTGGCTGTATCCCGCTGGTCAC
TCAGGTACTGAACGCGGAACTGGCGAAACAGGGCATCGAAGTTAACAACAACCTGTGCGAACACTTTGCT
TATTCGCGTCAGGAACTGTTCCATTTGATCCGCGTTGAAGGCATTAAAACCTTCGAAGAACTGCTGGCGA
AACACGGCAAAGGCTACGGTTGTGAAGTTTGTAAACCAACCGTCGGTTCGCTGCTGGCCTCCTGCTGGAA
CGAATACATTCTGAAGCCGGAACATACTCCGCTGCAGGATTCTAACGACAACTTCCTCGCTAACATCCAG
AAAGACGGCACCTACTCGGTGATCCCGCGTTCTCCGGGCGGTGAAATCACCCCGGAAGGGCTGATGGCGG
TAGGTCGTATCGCGCGTGAATTTAATCTCTACACCAAGATCACTGGCTCCCAGCGTCTGGCGATGTTTGG
CGCACAGAAAGACGATCTGCCGGAGATCTGGCGTCAGCTGATTGAAGCCGGCTTCGAAACCGGTCATGCC
TATGCGAAAGCACTGCGTATGGCGAAAACCTGCGTGGGTAGCACCTGGTGCCGCTACGGCGTTGGCGACA
GCGTCGGCCTCGGCGTGGAACTGGAAAACCGCTACAAAGGCATCCGTACGCCGCACAAAATGAAGTTCGG
TGTCTCCGGCTGTACCCGTGAATGTTCAGAAGCTCAGGGTAAAGACGTGGGTATTATCGCCACTGAAAAA
GGCTGGAACCTGTATGTTTGCGGTAACGGCGGCATGAAACCGCGTCATGCGGATCTGCTGGCGGCGGATA
TCGATCGCGAAACGCTGATCAAATATCTCGACCGCTTCATGATGTTCTACATCCGTACTGCCGACAAACT
GACGCGTACCGCACCGTGGTTAGAAAACCTCGAAGGCGGCATCGATTACCTGAAAGCAGTGATCATTGAC
GACAAACTGGGGCTGAACGCACATCTGGAAGAAGAGATGGCGCGCCTGCGTGAAGCGGTACTGTGTGAGT
GGACTGAAACGGTCAATACGCCGTCTGCGCAGACTCGCTTCAAACACTTCATCAACAGCGACAAGCGTGA
CCCGAACGTGCAGATGGTGCCAGAGCGCGAACAGCACCGTCCGGCAACGCCGTATGAACGTATCCCAGTA
ACTCTGGTGGAGGACAACGCATGA
# Upstream_100_bases:
ACCCATTAAGGAGTATATAAAGGTGAATTTGATTTACATCAATAAGCGGGGTTGCTGAATCGTTAAGGTA
GGCGGTAATAGAAAAGAAATCGAGGCAAAA
# Blattner_No_Ontology:
Energy metabolism
# Gene_Position:
3492033-3494576 (Clockwise)
# Centisome_Position:
75.265
# Gene_Name:
nirB
# GC_Content:
54.28%
# Metabolic_Importance:
Non_Essential
# Preceding_Gene:
tsgA
# Following_Gene:
nirD
# Operon_Status:
Yes
# Operon_Components:
nirB_nirD_nirC_cysG Ref: Center for Information Biology and DNA Data Bank of Japan, National Institute of Genetics http://www.cib.nig.ac.jp/dda/taitoh/ecoli.operon.html
# Paralogues:
None
# Copy Number:
Unknown
# RNA_Copy_No.:
Log phase (2max): 0.22
Stationary phase (2max): 0.26
Ref: Nature Biotech., 18, 1262-68, Dec. 2000 (PMID=11101804)
# Genbank_ID_(DNA):
G1789765
# Genbank_ID_(Protein):
AAC76390.1
# SWISS_PROT_(AC_&_ID):
$ NIRB_ECOLI (P08201)
# 2D_Gel_Image:
Not Available
# Other_Databases:
- ECOCYC: EG10653
- EcoGene: EG10653
- EMBL: X14202
- InterPro: IPR007419; IPR013027; IPR006066; IPR006067; IPR005117; IPR012744; IPR001100; IPR001327
- Pfam: PF04324; PF01077; PF03460; PF00070; PF07992
- PIR: H65130
- PRINTS: PR00368
- PROSITE: PS00365
# Pfam_Domain/Function:
PF04324 BFD-like [2Fe-2S] binding domain; PF01077 Nitrite and sulphite reductase 4Fe-4S domain; PF03460 Nitrite/Sulfite reductase ferredoxin-like half domain; PF00070 Pyridine nucleotide-disulphide oxidoreductase;
# Homologues:
Organism=Homo sapiens, GI21389617, Length=605, Positives=40%, Blast Score=80.5
Organism=Caenorhabditis elegans, GI17559934, Length=549, Positives=42%, Blast Score=88.2
Organism=Mus musculus, GI30424786, Length=500, Positives=40%, Blast Score=81.6
Organism=Drosophila melanogaster, GI24585130, Length=539, Positives=43%, Blast Score=87.4
Organism=Drosophila melanogaster, GI24639257, Length=552, Positives=40%, Blast Score=77.8
Organism=Drosophila melanogaster, GI18543267, Length=593, Positives=40%, Blast Score=77.8
Organism=Drosophila melanogaster, GI24639250, Length=593, Positives=40%, Blast Score=77.8
Organism=Drosophila melanogaster, GI24639252, Length=593, Positives=40%, Blast Score=77.8
Organism=Drosophila melanogaster, GI45551208, Length=665, Positives=40%, Blast Score=77.8
Organism=Drosophila melanogaster, GI24639248, Length=647, Positives=40%, Blast Score=77.8
# Similarity:
Belongs to the nitrite and sulfite reductase 4Fe-4S domain family.
# EC_Number:
1.7.1.4
# No._of_Amino_Acids:
847 (Translated Protein)
846 (Mature Protein)
# Molecular_Weight:
93122 92991
# Theoretical_pI:
6.07
# Theoretical_pI (Mature):
6.07
# Sequence:
// MSKVRLAIIGNGMVGHRFIEDLLDKSDAANFDITVFCEEPRIAYDRVHLSSYFSHHTAEE
// LSLVREGFYEKHGIKVLVGERAITINRQEKVIHSSAGRTVFYDKLIMATGSYPWIPPIKG
// SDTQDCFVYRTIEDLNAIESCARRSKRGAVVGGGLLGLEAAGALKNLGIETHVIEFAPML
// MAEQLDQMGGEQLRRKIESMGVRVHTSKNTLEIVQEGVEARKTMRFADGSELEVDFIVFS
// TGIRPRDKLATQCGLDVAPRGGIVINDSCQTSDPDIYAIGECASWNNRVFGLVAPGYKMA
// QVAVDHILGSENAFEGADLSAKLKLLGVDVGGIGDAHGRTPGARSYVYLDESKEIYKRLI
// VSEDNKTLLGAVLVGDTSDYGNLLQLVLNAIELPENPDSLILPAHSGSGKPSIGVDKLPD
// SAQICSCFDVTKGDLIAAINKGCHTVAALKAETKAGTGCGGCIPLVTQVLNAELAKQGIE
// VNNNLCEHFAYSRQELFHLIRVEGIKTFEELLAKHGKGYGCEVCKPTVGSLLASCWNEYI
// LKPEHTPLQDSNDNFLANIQKDGTYSVIPRSPGGEITPEGLMAVGRIAREFNLYTKITGS
// QRLAMFGAQKDDLPEIWRQLIEAGFETGHAYAKALRMAKTCVGSTWCRYGVGDSVGLGVE
// LENRYKGIRTPHKMKFGVSGCTRECSEAQGKDVGIIATEKGWNLYVCGNGGMKPRHADLL
// AADIDRETLIKYLDRFMMFYIRTADKLTRTAPWLENLEGGIDYLKAVIIDDKLGLNAHLE
// EEMARLREAVLCEWTETVNTPSAQTRFKHFINSDKRDPNVQMVPEREQHRPATPYERIPV
// TLVEDNA
// /\
// SKVRLAIIGNGMVGHRFIEDLLDKSDAANFDITVFCEEPRIAYDRVHLSSYFSHHTAEEL
// SLVREGFYEKHGIKVLVGERAITINRQEKVIHSSAGRTVFYDKLIMATGSYPWIPPIKGS
// DTQDCFVYRTIEDLNAIESCARRSKRGAVVGGGLLGLEAAGALKNLGIETHVIEFAPMLM
// AEQLDQMGGEQLRRKIESMGVRVHTSKNTLEIVQEGVEARKTMRFADGSELEVDFIVFST
// GIRPRDKLATQCGLDVAPRGGIVINDSCQTSDPDIYAIGECASWNNRVFGLVAPGYKMAQ
// VAVDHILGSENAFEGADLSAKLKLLGVDVGGIGDAHGRTPGARSYVYLDESKEIYKRLIV
// SEDNKTLLGAVLVGDTSDYGNLLQLVLNAIELPENPDSLILPAHSGSGKPSIGVDKLPDS
// AQICSCFDVTKGDLIAAINKGCHTVAALKAETKAGTGCGGCIPLVTQVLNAELAKQGIEV
// NNNLCEHFAYSRQELFHLIRVEGIKTFEELLAKHGKGYGCEVCKPTVGSLLASCWNEYIL
// KPEHTPLQDSNDNFLANIQKDGTYSVIPRSPGGEITPEGLMAVGRIAREFNLYTKITGSQ
// RLAMFGAQKDDLPEIWRQLIEAGFETGHAYAKALRMAKTCVGSTWCRYGVGDSVGLGVEL
// ENRYKGIRTPHKMKFGVSGCTRECSEAQGKDVGIIATEKGWNLYVCGNGGMKPRHADLLA
// ADIDRETLIKYLDRFMMFYIRTADKLTRTAPWLENLEGGIDYLKAVIIDDKLGLNAHLEE
// EMARLREAVLCEWTETVNTPSAQTRFKHFINSDKRDPNVQMVPEREQHRPATPYERIPVT
// LVEDNA
# PROSITE_Motif:
NIR_SIR; PATTERN. PS00365; Nitrite and sulfite reductases iron-sulfur/siroheme-binding site. [STV]-G-C-x(3)-C-x(6)-[DE]-[LIVMF]-[GAT]-[LIVMF]. PDOC00314; //
# Important_Sites:
Not Available
# Transmembrane:
Not Available
# Cys/Met_Content:
2.5 %Cys (Translated Protein)
2.1 %Met (Translated Protein)
4.6 %Cys+Met (Translated Protein)
2.5 %Cys (Mature Protein)
2.0 %Met (Mature Protein)
4.5 %Cys+Met (Mature Protein)
# Secondary_Structure_(PDB):
ALKAPVVVLGAGLASVSFVAELRQAGYQGLITVVGDEAERPYDRPPLSKDF
CCEEEEEEECCHHHHHHHHHHHHHHCCCEEEEEEEEEECEEECCCCCCCHH
MAHGDAEKIRLDCKRAPEVEWLLGVTAQSFDPQAHTVALSDGRTLPYGTLV
HHHCCCCCCEEECCCCCCEEEEECEEEEEEECCCCEEEECCCEEEEEEEEE
LATGAAPRALPTLQGATMPVHTLRTLEDARRIQAGLRPQSRLLIVGGGVIG
EECCEEEECCCCCCCCCEEEEECCCHHHHHHHHHHCCCCEEEEEECCCHHH
LELAATARTAGVHVSLVETQPRLMSRAAPATLADFVARYHAAQGVDLRFER
HHHHHHHHHHCEEEEEEEEECCCCCCCCCHHHHHHHHHHHHHHCEEEEECE
SVTGSVDGVVLLDDGTRIAADMVVVGIGVLANDALARAAGLACDDGIFVDA
EEEEECCCEEEEECCEEEEEEEEEEECCEEECHHHHHHHCCCCCCCEEECC
YGRTTCPDVYALGDVTRQRNPLSGRFERIETWSNAQNQGIAVARHLVDPTA
CCCCCCCCEEEECCCEEEEECCCCEEEECCCHHHHHHHHHHHHHHHHCCCC
PGYAELPWYWSDQGALRIQVAGLASGDEEIVRGEVSLDAPKFTLIELQKGR
CCCCCEEEEEEECCCEEEEEECCCCEEEEEEECCCCCCCEEEEEEEEECCC
IVGATCVNNARDFAPLRRLLAVGAKPDRAALADPATDLRKLAAA
CEEEEEECCCCHHHHHHHHHHHCCCCCHHHHHCCCCHHHHHHHC
# PDB_Accession:
& Model Based on 1D7Y (1-286)
# Resolution:
Not Available
# Structure_CLASS:
Alpha Beta
# Quaternary_Structure:
heterotrimeric A2B complex of nirB (2x) and nirD
# Interacting_Partners:
1) nirB, 2) nirD, 3) dsbE (hypothetical), 4) trxA (hypothetical)
# Cofactors:
--FAD --flavin --more --NAD+ --NADH --NADPH --siroheme
# Metals_Ions:
--iron
# Kcat_Value_[1/min]:
Not Available
# Specific_Activity_[micromol/min/mg]:
Not Available
# Km_Value_[mM]:
5.3 {hydroxylamine}
0.4 {NO2-}
0.016 {NADH}
0.005-0.0055 {NO2-}
# Substrates:
3 NAD(P)H + nitrite
# Products:
3 NAD(P)+ + NH4OH + H2O
# Specific_Reaction:
3 NAD(P)H + nitrite = 3 NAD(P)+ + NH4OH + H2O
# General_Reaction:
Redox reaction;
# Inhibitor:
--1,10-phenanthroline --2,2'-bipyridine --arsenite --CN- --NAD+ --NADP+ --NaN3 --p-chloromercuribenzoate --SO32-
# Priority:
1.0
# Status:
Selected, Cloned, Expressed, Soluble, Purified, Crystallized
# Availability:
Montreal-Kingston Bacterial Structural Genomics Initiative
#END_ECARDFILE
#BEGIN_ECARDFILE
# Entry_ID:
CC1767A.1
# Accession_No.:
UA0001767
# Name:
Hypothetical protein yihM
# Alternate_Names:
Not Available
# General_Function:
Xylose isomerase-like
# COG_Function:
Not Available
# COG_ID:
Not Available
# Specific_Function:
Not Available
# Riley_Gene_Function:
predicted sugar phosphate isomerase
# Riley_Cell_Function:
>>>
Not Available
# Gene_Ontology:
>>>
Function: Not Available
||
>>>
Process: Not Available
||
>>>
Component: Not Available
# Location:
Cytoplasm
# Blattner_Number:
b3873
# Gene_Sequence:
ATGGTGACAATAAATAACGCAAGAAAGATTCTACAACGTGTCGACACTCTTCCTCTTTATTTACATGCTT
ATGCCTTTCATTTAAATATGCGGCTGGAAAGAGTGTTGCCTGCTGATTTACTTGATATCGCAAGTGAAAA
TAATCTACGTGGCGTCAAAATCCATGTTCTCGATGGCGAGCGTTTTTCTCTTGGTAATATGGACGATAAA
GAACTCTCTGCCTTTGGGGATAAAGCCCGCCGTCTGAACCTTGATATTCATATTGAAACCAGCGCCTCAG
ATAAGGCATCTATTGACGAAGCCGTCGCCATCGCGTTGAAAACTGGGGCATCGTCCGTACGTTTTTATCC
ACGTTATGAAGGTAATTTGCGCGACGTATTATCGATTATCGCTAACGACATTGCCTATGTACGGGAAACG
TATCAGGACAGCGGCCTGACTTTTACGATCGAGCAGCATGAAGATTTAAAAAGTCATGAGCTGGTGTCGC
TGGTCAAAGAAAGTGAGATGGAATCTCTTTCCTTACTGTTTGATTTTGCGAACATGATCAATGCAAATGA
GCATCCCATCGACGCTTTAAAAACGATGGCACCGCATATTACCCAGGTCCATATCAAAGATGCCTTGATC
GTTAAAGAACCGGGTGGCCTGGGTCATAAAGCCTGTATTTCAGGTCAGGGTGATATGCCGTTCAAAGCGT
TATTAACGCACCTTATCTGCCTGGGTGATGATGAGCCGCAGGTGACGGCATATGGCCTGGAAGAAGAGGT
TGATTACTATGCGCCGGCGTTCCGCTTTGAAGACGAAGATGATAATCCGTGGATCCCTTATCGCCAGATG
AGTGAAACACCATTGCCAGAAAATCATTTACTGGATGCGCGGTTACGTAAAGAAAAAGAAGATGCAATTA
ATCAGATAAATCATGTGCGTAACGTACTACAACAAATCAAACAAGAGGCAAACCATCTTCTGAACCACTA
A
# Upstream_100_bases:
GAAAAGCATCGCGCCGACCAGCAAGGCAATATTGTCCAAATAGATATTGAATATTGGCGATTTGAGGCCG
TAGACCTCATCATTAATCTGTAGGTGTTTT
# Blattner_No_Ontology:
Hypothetical, unclassified, unknown
# Gene_Position:
4059188-4060168 (Clockwise)
# Centisome_Position:
87.489
# Gene_Name:
yihM
# GC_Content:
43.93%
# Metabolic_Importance:
Unknown
# Preceding_Gene:
yihL
# Following_Gene:
yihN
# Operon_Status:
Yes
# Operon_Components:
yihL_yihM Ref: RegulonDB http://kinich.cifn.unam.mx:8850/db/regulondb_cgi.query_simple?v_organism=ECK12&v_table=3&v_name=yihM
# Paralogues:
None
# Copy Number:
Unknown
# RNA_Copy_No.:
Log phase (2max): 0.05
Stationary phase (2max): 0.12
Ref: Nature Biotech., 18, 1262-68, Dec. 2000 (PMID=11101804)
# Genbank_ID_(DNA):
G1790305
# Genbank_ID_(Protein):
AAC76870.1
# SWISS_PROT_(AC_&_ID):
$ YIHM_ECOLI (P32134)
# 2D_Gel_Image:
Not Available
# Other_Databases:
- ECOCYC: EG11839
- EcoGene: EG11839
- EMBL: L19201
- InterPro: IPR012307
- Pfam: PF01261
- PIR: S40818
# Pfam_Domain/Function:
None
# Homologues:
Not Available
# Similarity:
Not Available
# EC_Number:
Not Available
# No._of_Amino_Acids:
326 (Translated Protein)
326 (Mature Protein)
# Molecular_Weight:
36942 36942
# Theoretical_pI:
4.96
# Theoretical_pI (Mature):
4.96
# Sequence:
// MVTINNARKILQRVDTLPLYLHAYAFHLNMRLERVLPADLLDIASENNLRGVKIHVLDGE
// RFSLGNMDDKELSAFGDKARRLNLDIHIETSASDKASIDEAVAIALKTGASSVRFYPRYE
// GNLRDVLSIIANDIAYVRETYQDSGLTFTIEQHEDLKSHELVSLVKESEMESLSLLFDFA
// NMINANEHPIDALKTMAPHITQVHIKDALIVKEPGGLGHKACISGQGDMPFKALLTHLIC
// LGDDEPQVTAYGLEEEVDYYAPAFRFEDEDDNPWIPYRQMSETPLPENHLLDARLRKEKE
// DAINQINHVRNVLQQIKQEANHLLNH
// /\
// MVTINNARKILQRVDTLPLYLHAYAFHLNMRLERVLPADLLDIASENNLRGVKIHVLDGE
// RFSLGNMDDKELSAFGDKARRLNLDIHIETSASDKASIDEAVAIALKTGASSVRFYPRYE
// GNLRDVLSIIANDIAYVRETYQDSGLTFTIEQHEDLKSHELVSLVKESEMESLSLLFDFA
// NMINANEHPIDALKTMAPHITQVHIKDALIVKEPGGLGHKACISGQGDMPFKALLTHLIC
// LGDDEPQVTAYGLEEEVDYYAPAFRFEDEDDNPWIPYRQMSETPLPENHLLDARLRKEKE
// DAINQINHVRNVLQQIKQEANHLLNH
# PROSITE_Motif:
Not Available
# Important_Sites:
Not Available
# Transmembrane:
Not Available
# Cys/Met_Content:
0.6 %Cys (Translated Protein)
2.5 %Met (Translated Protein)
3.1 %Cys+Met (Translated Protein)
0.6 %Cys (Mature Protein)
2.5 %Met (Mature Protein)
3.1 %Cys+Met (Mature Protein)
# Secondary_Structure:
>YIHM_ECOLI (Translated Protein)
MVTINNARKILQRVDTLPLYLHAYAFHLNMRLERVLPADLLDIASENNLRGVKIHVLDGE
CEEECHHHHHHHHHCCCCEEEEEEEEEEEEEHHHCCCHHHHHHCCCCCCEEEEEEEECCC
RFSLGNMDDKELSAFGDKARRLNLDIHIETSASDKASIDEAVAIALKTGASSVRFYPRYE
CCCCCCCCHHHHHHCCCCCEEEEEEEEEECCCCCCCCCCCEEEEEEECCCCEEEEEECCC
GNLRDVLSIIANDIAYVRETYQDSGLTFTIEQHEDLKSHELVSLVKESEMESLSLLFDFA
CCHHHHHHHHHHHHHHHHHHHHHCCEEEEHHHHHHHHHHHHHHHHHHHCCCCCEEEECCC
NMINANEHPIDALKTMAPHITQVHIKDALIVKEPGGLGHKACISGQGDMPFKALLTHLIC
HHHHHCCCCHHHHHHHCCEEEEEEEEEEEEEECCCCCCCCCCCCCCCCCCHHHHHHHHHH
LGDDEPQVTAYGLEEEVDYYAPAFRFEDEDDNPWIPYRQMSETPLPENHLLDARLRKEKE
CCCCCCCEEECCCCCCCCCCCCCCEECCCCCCCCCCHHCCCCCCCCHHHHHHHHHHHHHH
DAINQINHVRNVLQQIKQEANHLLNH
HHHHHHHHHHHHHHHHHHHHHHHCCC
/\
>YIHM_ECOLI (Mature Protein)
VTINNARKILQRVDTLPLYLHAYAFHLNMRLERVLPADLLDIASENNLRGVKIHVLDGER
EEECHHHHHHHHHCCCCEEEEEEEEEEEEEHHHCCCHHHHHHCCCCCCEEEEEEEECCCC
FSLGNMDDKELSAFGDKARRLNLDIHIETSASDKASIDEAVAIALKTGASSVRFYPRYEG
CCCCCCCHHHHHHCCCCCEEEEEEEEEECCCCCCCCCCCEEEEEEECCCCEEEEEECCCC
NLRDVLSIIANDIAYVRETYQDSGLTFTIEQHEDLKSHELVSLVKESEMESLSLLFDFAN
CHHHHHHHHHHHHHHHHHHHHHCCEEEEHHHHHHHHHHHHHHHHHHHCCCCCEEEECCCH
MINANEHPIDALKTMAPHITQVHIKDALIVKEPGGLGHKACISGQGDMPFKALLTHLICL
HHHHCCCCHHHHHHHCCEEEEEEEEEEEEEECCCCCCCCCCCCCCCCCCHHHHHHHHHHC
GDDEPQVTAYGLEEEVDYYAPAFRFEDEDDNPWIPYRQMSETPLPENHLLDARLRKEKED
CCCCCCEEECCCCCCCCCCCCCCEECCCCCCCCCCHHCCCCCCCCHHHHHHHHHHHHHHH
AINQINHVRNVLQQIKQEANHLLNH
HHHHHHHHHHHHHHHHHHHHHHCCC
# PDB_Accession:
& Not Available
# Resolution:
Not Available
# Structure_CLASS:
Alpha Beta
# Quaternary_Structure:
Not Available
# Interacting_Partners:
Not Available
# Cofactors:
Not Available
# Metals_Ions:
Not Available
# Kcat_Value_[1/min]:
Not Available
# Specific_Activity_[micromol/min/mg]:
Not Available
# Km_Value_[mM]:
Not Available
# Substrates:
Not Available
# Products:
Not Available
# Specific_Reaction:
Not Available
# General_Reaction:
Not Available
# Inhibitor:
Not Available
# Priority:
9.2
# Status:
Selected, Cloned, Expressed, Soluble, Purified
# Availability:
RSGI
#END_ECARDFILE
#BEGIN_ECARDFILE
# Entry_ID:
CC1367A.1
# Accession_No.:
UA0001367
# Name:
Transcriptional activator rfaH
# Alternate_Names:
Not Available
# General_Function:
Regulatory functions
# COG_Function:
Transcription (code K)
# COG_ID:
COG0250 Transcription antiterminator (Evalue = 4e-90)
# Specific_Function:
Not Available
# Riley_Gene_Function:
DNA-binding transcriptional antiterminator; transcriptional activator affecting biosynthesis, assembly and export of lipopolysaccharide core, F pilin, and haemolysin
# Riley_Cell_Function:
>>>
Metabolism
Macromolecules (cellular constituent) biosynthesis
Fimbria, pili, curli
||
>>>
Metabolism
Macromolecules (cellular constituent) biosynthesis
Lipopolysaccharide
Core region
||
>>>
Information transfer
RNA related
Transcription related
||
>>>
Regulation
Type of regulation
Transcriptional level
Activator
||
>>>
Regulation
Genetic unit regulated
Regulon (a network of operons encoding related functions)
||
>>>
Cell structure
Surface antigens (ECA, O antigen of LPS)
||
>>>
Cell structure
Pilus
||
>>>
Location of gene products
Cytoplasm
# Gene_Ontology:
>>>
Function: transcription regulator activity
Function: transcriptional elongation regulator activity
||
>>>
Function: transcription regulator activity
Function: transcriptional elongation regulator activity
||
>>>
Function: transcription regulator activity
Function: transcriptional elongation regulator activity
||
>>>
Process: physiological process
Process: metabolism
Process: regulation of metabolism
Process: regulation of cellular metabolism
Process: regulation of nucleobase, nucleoside, nucleotide and nucleic acid metabolism
Process: regulation of transcription
Process: regulation of transcription, DNA-dependent
||
>>>
Process: cellular metabolism
Process: nucleobase, nucleoside, nucleotide and nucleic acid metabolism
Process: transcription
Process: transcription, DNA-dependent
Process: regulation of transcription, DNA-dependent
||
>>>
Process: regulation of transcription
Process: regulation of transcription, DNA-dependent
||
>>>
Process: regulation of nucleobase, nucleoside, nucleotide and nucleic acid metabolism
Process: regulation of transcription
Process: regulation of transcription, DNA-dependent
||
>>>
Process: regulation of cellular metabolism
Process: regulation of nucleobase, nucleoside, nucleotide and nucleic acid metabolism
Process: regulation of transcription
Process: regulation of transcription, DNA-dependent
||
>>>
Process: primary metabolism
Process: nucleobase, nucleoside, nucleotide and nucleic acid metabolism
Process: transcription
Process: transcription, DNA-dependent
Process: regulation of transcription, DNA-dependent
||
>>>
Process: regulation of transcription
Process: regulation of transcription, DNA-dependent
||
>>>
Process: regulation of nucleobase, nucleoside, nucleotide and nucleic acid metabolism
Process: regulation of transcription
Process: regulation of transcription, DNA-dependent
||
>>>
Process: regulation of physiological process
Process: regulation of metabolism
Process: regulation of cellular metabolism
Process: regulation of nucleobase, nucleoside, nucleotide and nucleic acid metabolism
Process: regulation of transcription
Process: regulation of transcription, DNA-dependent
||
>>>
Process: regulation of cellular physiological process
Process: regulation of cellular metabolism
Process: regulation of nucleobase, nucleoside, nucleotide and nucleic acid metabolism
Process: regulation of transcription
Process: regulation of transcription, DNA-dependent
||
>>>
Process: cellular physiological process
Process: cellular metabolism
Process: nucleobase, nucleoside, nucleotide and nucleic acid metabolism
Process: transcription
Process: transcription, DNA-dependent
Process: regulation of transcription, DNA-dependent
||
>>>
Process: regulation of transcription
Process: regulation of transcription, DNA-dependent
||
>>>
Process: regulation of nucleobase, nucleoside, nucleotide and nucleic acid metabolism
Process: regulation of transcription
Process: regulation of transcription, DNA-dependent
||
>>>
Process: regulation of cellular metabolism
Process: regulation of nucleobase, nucleoside, nucleotide and nucleic acid metabolism
Process: regulation of transcription
Process: regulation of transcription, DNA-dependent
||
>>>
Process: regulation of cellular physiological process
Process: regulation of cellular metabolism
Process: regulation of nucleobase, nucleoside, nucleotide and nucleic acid metabolism
Process: regulation of transcription
Process: regulation of transcription, DNA-dependent
||
>>>
Process: cellular process
Process: regulation of cellular process
Process: regulation of cellular physiological process
Process: regulation of cellular metabolism
Process: regulation of nucleobase, nucleoside, nucleotide and nucleic acid metabolism
Process: regulation of transcription
Process: regulation of transcription, DNA-dependent
||
>>>
Process: cellular physiological process
Process: cellular metabolism
Process: nucleobase, nucleoside, nucleotide and nucleic acid metabolism
Process: transcription
Process: transcription, DNA-dependent
Process: regulation of transcription, DNA-dependent
||
>>>
Process: regulation of transcription
Process: regulation of transcription, DNA-dependent
||
>>>
Process: regulation of nucleobase, nucleoside, nucleotide and nucleic acid metabolism
Process: regulation of transcription
Process: regulation of transcription, DNA-dependent
||
>>>
Process: regulation of cellular metabolism
Process: regulation of nucleobase, nucleoside, nucleotide and nucleic acid metabolism
Process: regulation of transcription
Process: regulation of transcription, DNA-dependent
||
>>>
Process: regulation of cellular physiological process
Process: regulation of cellular metabolism
Process: regulation of nucleobase, nucleoside, nucleotide and nucleic acid metabolism
Process: regulation of transcription
Process: regulation of transcription, DNA-dependent
||
>>>
Process: regulation of biological process
Process: regulation of physiological process
Process: regulation of metabolism
Process: regulation of cellular metabolism
Process: regulation of nucleobase, nucleoside, nucleotide and nucleic acid metabolism
Process: regulation of transcription
Process: regulation of transcription, DNA-dependent
||
>>>
Process: regulation of cellular physiological process
Process: regulation of cellular metabolism
Process: regulation of nucleobase, nucleoside, nucleotide and nucleic acid metabolism
Process: regulation of transcription
Process: regulation of transcription, DNA-dependent
||
>>>
Process: regulation of cellular process
Process: regulation of cellular physiological process
Process: regulation of cellular metabolism
Process: regulation of nucleobase, nucleoside, nucleotide and nucleic acid metabolism
Process: regulation of transcription
Process: regulation of transcription, DNA-dependent
Process: physiological process
Process: metabolism
Process: regulation of metabolism
Process: regulation of cellular metabolism
Process: regulation of nucleobase, nucleoside, nucleotide and nucleic acid metabolism
Process: regulation of transcription
Process: regulation of transcription, DNA-dependent
||
>>>
Process: cellular metabolism
Process: nucleobase, nucleoside, nucleotide and nucleic acid metabolism
Process: transcription
Process: transcription, DNA-dependent
Process: regulation of transcription, DNA-dependent
||
>>>
Process: regulation of transcription
Process: regulation of transcription, DNA-dependent
||
>>>
Process: regulation of nucleobase, nucleoside, nucleotide and nucleic acid metabolism
Process: regulation of transcription
Process: regulation of transcription, DNA-dependent
||
>>>
Process: regulation of cellular metabolism
Process: regulation of nucleobase, nucleoside, nucleotide and nucleic acid metabolism
Process: regulation of transcription
Process: regulation of transcription, DNA-dependent
||
>>>
Process: primary metabolism
Process: nucleobase, nucleoside, nucleotide and nucleic acid metabolism
Process: transcription
Process: transcription, DNA-dependent
Process: regulation of transcription, DNA-dependent
||
>>>
Process: regulation of transcription
Process: regulation of transcription, DNA-dependent
||
>>>
Process: regulation of nucleobase, nucleoside, nucleotide and nucleic acid metabolism
Process: regulation of transcription
Process: regulation of transcription, DNA-dependent
||
>>>
Process: regulation of physiological process
Process: regulation of metabolism
Process: regulation of cellular metabolism
Process: regulation of nucleobase, nucleoside, nucleotide and nucleic acid metabolism
Process: regulation of transcription
Process: regulation of transcription, DNA-dependent
||
>>>
Process: regulation of cellular physiological process
Process: regulation of cellular metabolism
Process: regulation of nucleobase, nucleoside, nucleotide and nucleic acid metabolism
Process: regulation of transcription
Process: regulation of transcription, DNA-dependent
||
>>>
Process: cellular physiological process
Process: cellular metabolism
Process: nucleobase, nucleoside, nucleotide and nucleic acid metabolism
Process: transcription
Process: transcription, DNA-dependent
Process: regulation of transcription, DNA-dependent
||
>>>
Process: regulation of transcription
Process: regulation of transcription, DNA-dependent
||
>>>
Process: regulation of nucleobase, nucleoside, nucleotide and nucleic acid metabolism
Process: regulation of transcription
Process: regulation of transcription, DNA-dependent
||
>>>
Process: regulation of cellular metabolism
Process: regulation of nucleobase, nucleoside, nucleotide and nucleic acid metabolism
Process: regulation of transcription
Process: regulation of transcription, DNA-dependent
||
>>>
Process: regulation of cellular physiological process
Process: regulation of cellular metabolism
Process: regulation of nucleobase, nucleoside, nucleotide and nucleic acid metabolism
Process: regulation of transcription
Process: regulation of transcription, DNA-dependent
||
>>>
Process: cellular process
Process: regulation of cellular process
Process: regulation of cellular physiological process
Process: regulation of cellular metabolism
Process: regulation of nucleobase, nucleoside, nucleotide and nucleic acid metabolism
Process: regulation of transcription
Process: regulation of transcription, DNA-dependent
||
>>>
Process: cellular physiological process
Process: cellular metabolism
Process: nucleobase, nucleoside, nucleotide and nucleic acid metabolism
Process: transcription
Process: transcription, DNA-dependent
Process: regulation of transcription, DNA-dependent
||
>>>
Process: regulation of transcription
Process: regulation of transcription, DNA-dependent
||
>>>
Process: regulation of nucleobase, nucleoside, nucleotide and nucleic acid metabolism
Process: regulation of transcription
Process: regulation of transcription, DNA-dependent
||
>>>
Process: regulation of cellular metabolism
Process: regulation of nucleobase, nucleoside, nucleotide and nucleic acid metabolism
Process: regulation of transcription
Process: regulation of transcription, DNA-dependent
||
>>>
Process: regulation of cellular physiological process
Process: regulation of cellular metabolism
Process: regulation of nucleobase, nucleoside, nucleotide and nucleic acid metabolism
Process: regulation of transcription
Process: regulation of transcription, DNA-dependent
||
>>>
Process: regulation of biological process
Process: regulation of physiological process
Process: regulation of metabolism
Process: regulation of cellular metabolism
Process: regulation of nucleobase, nucleoside, nucleotide and nucleic acid metabolism
Process: regulation of transcription
Process: regulation of transcription, DNA-dependent
||
>>>
Process: regulation of cellular physiological process
Process: regulation of cellular metabolism
Process: regulation of nucleobase, nucleoside, nucleotide and nucleic acid metabolism
Process: regulation of transcription
Process: regulation of transcription, DNA-dependent
||
>>>
Process: regulation of cellular process
Process: regulation of cellular physiological process
Process: regulation of cellular metabolism
Process: regulation of nucleobase, nucleoside, nucleotide and nucleic acid metabolism
Process: regulation of transcription
Process: regulation of transcription, DNA-dependent
Process: physiological process
Process: metabolism
Process: regulation of metabolism
Process: regulation of cellular metabolism
Process: regulation of nucleobase, nucleoside, nucleotide and nucleic acid metabolism
Process: regulation of transcription
Process: regulation of transcription, DNA-dependent
||
>>>
Process: cellular metabolism
Process: nucleobase, nucleoside, nucleotide and nucleic acid metabolism
Process: transcription
Process: transcription, DNA-dependent
Process: regulation of transcription, DNA-dependent
||
>>>
Process: regulation of transcription
Process: regulation of transcription, DNA-dependent
||
>>>
Process: regulation of nucleobase, nucleoside, nucleotide and nucleic acid metabolism
Process: regulation of transcription
Process: regulation of transcription, DNA-dependent
||
>>>
Process: regulation of cellular metabolism
Process: regulation of nucleobase, nucleoside, nucleotide and nucleic acid metabolism
Process: regulation of transcription
Process: regulation of transcription, DNA-dependent
||
>>>
Process: primary metabolism
Process: nucleobase, nucleoside, nucleotide and nucleic acid metabolism
Process: transcription
Process: transcription, DNA-dependent
Process: regulation of transcription, DNA-dependent
||
>>>
Process: regulation of transcription
Process: regulation of transcription, DNA-dependent
||
>>>
Process: regulation of nucleobase, nucleoside, nucleotide and nucleic acid metabolism
Process: regulation of transcription
Process: regulation of transcription, DNA-dependent
||
>>>
Process: regulation of physiological process
Process: regulation of metabolism
Process: regulation of cellular metabolism
Process: regulation of nucleobase, nucleoside, nucleotide and nucleic acid metabolism
Process: regulation of transcription
Process: regulation of transcription, DNA-dependent
||
>>>
Process: regulation of cellular physiological process
Process: regulation of cellular metabolism
Process: regulation of nucleobase, nucleoside, nucleotide and nucleic acid metabolism
Process: regulation of transcription
Process: regulation of transcription, DNA-dependent
||
>>>
Process: cellular physiological process
Process: cellular metabolism
Process: nucleobase, nucleoside, nucleotide and nucleic acid metabolism
Process: transcription
Process: transcription, DNA-dependent
Process: regulation of transcription, DNA-dependent
||
>>>
Process: regulation of transcription
Process: regulation of transcription, DNA-dependent
||
>>>
Process: regulation of nucleobase, nucleoside, nucleotide and nucleic acid metabolism
Process: regulation of transcription
Process: regulation of transcription, DNA-dependent
||
>>>
Process: regulation of cellular metabolism
Process: regulation of nucleobase, nucleoside, nucleotide and nucleic acid metabolism
Process: regulation of transcription
Process: regulation of transcription, DNA-dependent
||
>>>
Process: regulation of cellular physiological process
Process: regulation of cellular metabolism
Process: regulation of nucleobase, nucleoside, nucleotide and nucleic acid metabolism
Process: regulation of transcription
Process: regulation of transcription, DNA-dependent
||
>>>
Process: cellular process
Process: regulation of cellular process
Process: regulation of cellular physiological process
Process: regulation of cellular metabolism
Process: regulation of nucleobase, nucleoside, nucleotide and nucleic acid metabolism
Process: regulation of transcription
Process: regulation of transcription, DNA-dependent
||
>>>
Process: cellular physiological process
Process: cellular metabolism
Process: nucleobase, nucleoside, nucleotide and nucleic acid metabolism
Process: transcription
Process: transcription, DNA-dependent
Process: regulation of transcription, DNA-dependent
||
>>>
Process: regulation of transcription
Process: regulation of transcription, DNA-dependent
||
>>>
Process: regulation of nucleobase, nucleoside, nucleotide and nucleic acid metabolism
Process: regulation of transcription
Process: regulation of transcription, DNA-dependent
||
>>>
Process: regulation of cellular metabolism
Process: regulation of nucleobase, nucleoside, nucleotide and nucleic acid metabolism
Process: regulation of transcription
Process: regulation of transcription, DNA-dependent
||
>>>
Process: regulation of cellular physiological process
Process: regulation of cellular metabolism
Process: regulation of nucleobase, nucleoside, nucleotide and nucleic acid metabolism
Process: regulation of transcription
Process: regulation of transcription, DNA-dependent
||
>>>
Process: regulation of biological process
Process: regulation of physiological process
Process: regulation of metabolism
Process: regulation of cellular metabolism
Process: regulation of nucleobase, nucleoside, nucleotide and nucleic acid metabolism
Process: regulation of transcription
Process: regulation of transcription, DNA-dependent
||
>>>
Process: regulation of cellular physiological process
Process: regulation of cellular metabolism
Process: regulation of nucleobase, nucleoside, nucleotide and nucleic acid metabolism
Process: regulation of transcription
Process: regulation of transcription, DNA-dependent
||
>>>
Process: regulation of cellular process
Process: regulation of cellular physiological process
Process: regulation of cellular metabolism
Process: regulation of nucleobase, nucleoside, nucleotide and nucleic acid metabolism
Process: regulation of transcription
Process: regulation of transcription, DNA-dependent
||
>>>
Component: Not Available
# Location:
Cytoplasm
# Blattner_Number:
b3842
# Gene_Sequence:
ATGCAATCCTGGTATTTACTGTACTGCAAGCGCGGGCAACTTCAACGTGCCCAGGAACACCTCGAAAGAC
AGGCTGTGAATTGCCTGGCACCGATGATCACCCTGGAAAAAATCGTGCGTGGAAAACGTACTGCAGTCAG
TGAGCCATTGTTCCCCAACTACCTGTTTGTGGAATTTGACCCAGAAGTGATTCATACCACGACTATCAAC
GCGACCCGCGGTGTCAGCCACTTCGTGCGCTTTGGCGCGTCGCCAGCGATAGTCCCATCGGCGGTTATTC
ATCAGCTATCGGTATATAAACCGAAAGACATTGTCGATCCGGCAACCCCTTATCCGGGTGATAAGGTGAT
TATTACCGAAGGCGCGTTCGAAGGCTTTCAGGCCATTTTCACCGAACCCGATGGTGAGGCTCGCTCCATG
CTATTGCTTAATCTTATTAATAAAGAGATTAAGCACAGTGTGAAGAATACCGAGTTCCGCAAACTCTAA
# Upstream_100_bases:
AGCGTGAACTCTGACGGTATAACGCAAACCGGGGAATATAATTAACTTAGCGTAAAGCTTTTGCTATCCT
TGCGCCCCGATTAAACGGATAAGAGTCATT
# Blattner_No_Ontology:
Cell structure
# Gene_Position:
4022356-4022844 (Counter Clockwise)
# Centisome_Position:
86.705
# Gene_Name:
rfaH or hlyT or sfrB
# GC_Content:
49.69%
# Metabolic_Importance:
Non_Essential
# Preceding_Gene:
tatD
# Following_Gene:
ubiD
# Operon_Status:
No
# Operon_Components:
None
# Paralogues:
None
# Copy Number:
Unknown
# RNA_Copy_No.:
Log phase (2max): 0.06
Stationary phase (2max): 0.07
Ref: Nature Biotech., 18, 1262-68, Dec. 2000 (PMID=11101804)
# Genbank_ID_(DNA):
G1790276
# Genbank_ID_(Protein):
AAC76845.1
# SWISS_PROT_(AC_&_ID):
$ RFAH_ECOLI (P0AFW0)
# 2D_Gel_Image:
Not Available
# Other_Databases:
- ECOCYC: EG10839
- EcoGene: EG10839
- EMBL: X65013
- InterPro: IPR006645; IPR001062; IPR010215; IPR008991
- Pfam: PF02357
- PIR: S30732
# Pfam_Domain/Function:
None
# Homologues:
Not Available
# Similarity:
Not Available
# EC_Number:
Not Available
# No._of_Amino_Acids:
162 (Translated Protein)
162 (Mature Protein)
# Molecular_Weight:
18340 18340
# Theoretical_pI:
8.69
# Theoretical_pI (Mature):
8.69
# Sequence:
// MQSWYLLYCKRGQLQRAQEHLERQAVNCLAPMITLEKIVRGKRTAVSEPLFPNYLFVEFD
// PEVIHTTTINATRGVSHFVRFGASPAIVPSAVIHQLSVYKPKDIVDPATPYPGDKVIITE
// GAFEGFQAIFTEPDGEARSMLLLNLINKEIKHSVKNTEFRKL
// /\
// MQSWYLLYCKRGQLQRAQEHLERQAVNCLAPMITLEKIVRGKRTAVSEPLFPNYLFVEFD
// PEVIHTTTINATRGVSHFVRFGASPAIVPSAVIHQLSVYKPKDIVDPATPYPGDKVIITE
// GAFEGFQAIFTEPDGEARSMLLLNLINKEIKHSVKNTEFRKL
# PROSITE_Motif:
Not Available
# Important_Sites:
Not Available
# Transmembrane:
Not Available
# Cys/Met_Content:
1.2 %Cys (Translated Protein)
1.9 %Met (Translated Protein)
3.1 %Cys+Met (Translated Protein)
1.2 %Cys (Mature Protein)
1.9 %Met (Mature Protein)
3.1 %Cys+Met (Mature Protein)
# Secondary_Structure:
>RFAH_ECOLI (Translated Protein)
MQSWYLLYCKRGQLQRAQEHLERQAVNCLAPMITLEKIVRGKRTAVSEPLFPNYLFVEFD
CCEEEEEEEHHHHHHHHHHHHHHCCCCCCCCCCEEEEECCCCEEEEEECCCCCEEEEEEE
PEVIHTTTINATRGVSHFVRFGASPAIVPSAVIHQLSVYKPKDIVDPATPYPGDKVIITE
CCCCCEEEECCCCCEEEECCCCCCCCCCCHHHHHHHHCCCCCCCCCCCCCCCCCEEEEEC
GAFEGFQAIFTEPDGEARSMLLLNLINKEIKHSVKNTEFRKL
CCCCCCCEEEEECCHHHHHHHHHHHHCCEEEEEEECHHEECC
/\
>RFAH_ECOLI (Mature Protein)
QSWYLLYCKRGQLQRAQEHLERQAVNCLAPMITLEKIVRGKRTAVSEPLFPNYLFVEFDP
CEEEEEEEHHHHHHHHHHHHHHCCCCCCCCCCEEEEECCCCEEEEEECCCCCEEEEEEEC
EVIHTTTINATRGVSHFVRFGASPAIVPSAVIHQLSVYKPKDIVDPATPYPGDKVIITEG
CCCCEEEECCCCCEEEECCCCCCCCCCCHHHHHHHHCCCCCCCCCCCCCCCCCEEEEECC
AFEGFQAIFTEPDGEARSMLLLNLINKEIKHSVKNTEFRKL
CCCCCCEEEEECCHHHHHHHHHHHHCCEEEEEEECHHEECC
# PDB_Accession:
& Not Available
# Resolution:
Not Available
# Structure_CLASS:
Alpha Beta
# Quaternary_Structure:
Not Available
# Interacting_Partners:
Unknown
# Cofactors:
Not Available
# Metals_Ions:
Not Available
# Kcat_Value_[1/min]:
Not Available
# Specific_Activity_[micromol/min/mg]:
Not Available
# Km_Value_[mM]:
Not Available
# Substrates:
Not Available
# Products:
Not Available
# Specific_Reaction:
Not Available
# General_Reaction:
Not Available
# Inhibitor:
Not Available
# Priority:
6.2
# Status:
Not Available
# Availability:
Not Available
#END_ECARDFILE
#BEGIN_ECARDFILE
# Entry_ID:
CC3289A.1
# Accession_No.:
UA0003289
# Name:
Hypothetical protein ydfX
# Alternate_Names:
Not Available
# General_Function:
Not Available
# COG_Function:
Not Available
# COG_ID:
Not Available
# Specific_Function:
Not Available
# Riley_Gene_Function:
Qin prophage; predicted protein
# Riley_Cell_Function:
>>>
extrachromosomal
Prophage genes and phage related functions
# Gene_Ontology:
>>>
Function: Not Available
||
>>>
Process: Not Available
||
>>>
Component: Not Available
# Location:
Cytoplasm
# Blattner_Number:
b1568
# Gene_Sequence:
ATGAAAATCACTCCTGAACAGGCTCGTGAGGCTCTGGATGCCTGGATATGTCGACCAGGAATGACACAGG
AGCAGGCGACGATATTAATCACTGAAGCATTCTGGGCTTTGAAAGAGCGCCCGAACATCGATGTTCAGCG
TGTCACATATGAAGGTGGCGCGATTGATCAGCGAGCGCTTGGCGTTAATCGAGTGAAGATATTTGAACGC
TGGAAGGCTATCGACACCAGGGATAAGCGTGAAAAGTTCACGGCGCTAGTGCCTGCAATTATGGAGGCTA
CCACTGGATGA
# Upstream_100_bases:
CGCGCGATGCGTCTACAGGAGGCATCTGGCGGGGAGCTTCAGTATGATCCCAAAGTTTATGATGAATATC
GTAAGACGAAGCGGGCGGGGCGGTTGAACA
# Blattner_No_Ontology:
Hypothetical, unclassified, unknown
# Gene_Position:
1645370-1645660 (Counter Clockwise)
# Centisome_Position:
35.469
# Gene_Name:
ydfX
# GC_Content:
50.52%
# Metabolic_Importance:
Non_Essential
# Preceding_Gene:
ydfW
# Following_Gene:
dicC
# Operon_Status:
No
# Operon_Components:
None
# Paralogues:
None
# Copy Number:
Unknown
# RNA_Copy_No.:
Log phase (2max): 0.14
Stationary phase (2max): 0.17
Ref: Nature Biotech., 18, 1262-68, Dec. 2000 (PMID=11101804)
# Genbank_ID_(DNA):
G1787851
# Genbank_ID_(Protein):
AAC74641.1
# SWISS_PROT_(AC_&_ID):
$ YDFX_ECOLI (P76165)
# 2D_Gel_Image:
Not Available
# Other_Databases:
- ECOCYC: EG13836
- EcoGene: EG13836
- EMBL: U00096
- InterPro: IPR009364
- Pfam: PF06254
- PIR: C64912
# Pfam_Domain/Function:
PF06254 Protein of unknown function (DUF1019);
# Homologues:
Not Available
# Similarity:
Not Available
# EC_Number:
Not Available
# No._of_Amino_Acids:
96 (Translated Protein)
96 (Mature Protein)
# Molecular_Weight:
10976 10976
# Theoretical_pI:
8.50
# Theoretical_pI (Mature):
8.50
# Sequence:
// MKITPEQAREALDAWICRPGMTQEQATILITEAFWALKERPNIDVQRVTYEGGAIDQRAL
// GVNRVKIFERWKAIDTRDKREKFTALVPAIMEATTG
// /\
// MKITPEQAREALDAWICRPGMTQEQATILITEAFWALKERPNIDVQRVTYEGGAIDQRAL
// GVNRVKIFERWKAIDTRDKREKFTALVPAIMEATTG
# PROSITE_Motif:
Not Available
# Important_Sites:
Not Available
# Transmembrane:
Not Available
# Cys/Met_Content:
1.0 %Cys (Translated Protein)
3.1 %Met (Translated Protein)
4.2 %Cys+Met (Translated Protein)
1.0 %Cys (Mature Protein)
3.1 %Met (Mature Protein)
4.2 %Cys+Met (Mature Protein)
# Secondary_Structure:
>YDFX_ECOLI (Translated Protein)
MKITPEQAREALDAWICRPGMTQEQATILITEAFWALKERPNIDVQRVTYEGGAIDQRAL
CCCCHHHHHHHHHHHHCCCCCCCCCEEEEEEHHHHHHCCCCCCCEEEEEECCCCCHHHHH
GVNRVKIFERWKAIDTRDKREKFTALVPAIMEATTG
CCHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHCCCC
/\
>YDFX_ECOLI (Mature Protein)
KITPEQAREALDAWICRPGMTQEQATILITEAFWALKERPNIDVQRVTYEGGAIDQRALG
CCCHHHHHHHHHHHHCCCCCCCCCEEEEEEHHHHHHCCCCCCCEEEEEECCCCCHHHHHC
VNRVKIFERWKAIDTRDKREKFTALVPAIMEATTG
CHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHCCCC
# PDB_Accession:
& Not Available
# Resolution:
Not Available
# Structure_CLASS:
Alpha Beta
# Quaternary_Structure:
Not Available
# Interacting_Partners:
Not Available
# Cofactors:
Not Available
# Metals_Ions:
Not Available
# Kcat_Value_[1/min]:
Not Available
# Specific_Activity_[micromol/min/mg]:
Not Available
# Km_Value_[mM]:
Not Available
# Substrates:
Not Available
# Products:
Not Available
# Specific_Reaction:
Not Available
# General_Reaction:
Not Available
# Inhibitor:
Not Available
# Priority:
9
# Status:
Not Available
# Availability:
Not Available
#END_ECARDFILE
#BEGIN_ECARDFILE
# Entry_ID:
CC0286A.1
# Accession_No.:
UA0000286
# Name:
Protease 3 precursor
# Alternate_Names:
Protease III; Pitrilysin; Protease pi
# General_Function:
Cellular processes; Member of M16A family; pitrilysin; LuxS/MPP-like metallohydrolase
# COG_Function:
Amino acid transport and metabolism (code E)
# COG_ID:
COG1770 Protease II (Evalue = 0.0)
# Specific_Function:
Endopeptidase that degrades small peptides of less than 7 kDa, such as glucagon and insulin.
# Riley_Gene_Function:
protease III
# Riley_Cell_Function:
>>>
Metabolism
Macromolecule degradation
Proteins/peptides/glycopeptides
# Gene_Ontology:
>>>
Function: catalytic activity
Function: hydrolase activity
Function: peptidase activity
Function: endopeptidase activity
Function: metalloendopeptidase activity
||
>>>
Function: metallopeptidase activity
Function: metalloendopeptidase activity
||
>>>
Process: physiological process
Process: metabolism
Process: macromolecule metabolism
Process: protein metabolism
Process: cellular protein metabolism
Process: proteolysis
||
>>>
Process: cellular macromolecule metabolism
Process: cellular protein metabolism
Process: proteolysis
||
>>>
Process: cellular metabolism
Process: cellular macromolecule metabolism
Process: cellular protein metabolism
Process: proteolysis
||
>>>
Process: primary metabolism
Process: protein metabolism
Process: cellular protein metabolism
Process: proteolysis
||
>>>
Process: cellular physiological process
Process: cellular metabolism
Process: cellular macromolecule metabolism
Process: cellular protein metabolism
Process: proteolysis
||
>>>
Process: cellular process
Process: cellular physiological process
Process: cellular metabolism
Process: cellular macromolecule metabolism
Process: cellular protein metabolism
Process: proteolysis
||
>>>
Component: Not Available
# Location:
Periplasmic Protein
# Blattner_Number:
b2821
# Gene_Sequence:
ATGCCCCGCAGCACCTGGTTCAAAGCATTATTGTTGTTAGTTGCCCTTTGGGCACCCTTAAGTCAGGCAG
AAACGGGATGGCAGCCGATTCAGGAAACCATCCGTAAAAGTGATAAAGATAACCGCCAGTATCAGGCTAT
ACGTCTGGATAACGGTATGGTGGTCTTGCTGGTTTCTGATCCGCAGGCAGTTAAATCGCTCTCGGCGCTG
GTGGTGCCCGTTGGGTCGCTGGAAGATCCCGAGGCGTACCAGGGGCTGGCACATTACCTTGAACATATGA
GTCTGATGGGGTCGAAAAAGTACCCGCAGGCTGACAGTCTGGCCGAATATCTCAAAATGCACGGCGGTAG
TCACAATGCCAGCACTGCGCCGTATCGCACGGCTTTCTATCTGGAAGTTGAGAACGACGCCTTGCCTGGT
GCGGTAGACCGCCTGGCCGATGCTATTGCTGAACCTTTGCTCGACAAGAAATATGCCGAACGTGAGCGTA
ATGCGGTGAACGCTGAATTAACCATGGCGCGTACGCGTGACGGGATGCGCATGGCACAGGTCAGCGCAGA
AACCATTAACCCGGCACACCCCGGTTCAAAGTTTTCTGGTGGTAACCTCGAAACTTTAAGCGACAAACCT
GGTAATCCGGTGCAGCAGGCGCTGAAAGATTTCCACGAGAAGTACTATTCCGCCAATTTGATGAAGGCGG
TTATTTACAGTAATAAACCGCTGCCGGAGTTGGCAAAAATGGCGGCGGACACCTTTGGTCGCGTGCCGAA
CAAAGAGAGCAAAAAACCGGAAATCACCGTGCCGGTAGTCACCGACGCGCAAAAGGGCATTATCATTCAT
TACGTCCCTGCGCTGCCGCGTAAAGTGTTGCGCGTTGAGTTTCGCATCGATAACAACTCAGCGAAGTTCC
GTAGTAAAACCGATGAATTGATTACCTATCTGATTGGCAATCGCAGCCCAGGTACACTTTCTGACTGGCT
GCAAAAGCAGGGATTAGTTGAGGGCATTAGCGCCAACTCCGATCCTATCGTCAACGGCAACAGCGGCGTA
TTAGCGATCTCTGCGTCTTTAACCGATAAAGGCCTGGCTAATCGCGATCAGGTTGTGGCGGCAATTTTTA
GCTATCTCAATCTGTTACGTGAAAAAGGCATTGATAAACAATACTTCGATGAACTGGCGAATGTGCTGGA
TATCGACTTCCGTTATCCGTCGATCACCCGTGATATGGATTACGTCGAATGGCTGGCAGATACCATGATT
CGCGTTCCTGTTGAGCATACGCTGGATGCAGTCAATATTGCCGATCGGTACGATGCTAAAGCAGTAAAGG
AACGTCTGGCGATGATGACGCCGCAGAATGCGCGTATCTGGTATATCAGCCCGAAAGAGCCGCACAACAA
AACGGCTTACTTTGTCGATGCGCCGTATCAGGTCGATAAAATCAGCGCACAAACTTTCGCCGACTGGCAG
AAAAAAGCCGCCGACATTGCGCTCTCTTTGCCAGAGCTTAACCCTTATATTCCTGATGATTTCTCGCTGA
TTAAGTCAGAGAAGAAATACGACCATCCAGAGCTGATTGTTGATGAGTCGAATCTGCGCGTGGTGTATGC
GCCAAGCCGTTATTTTGCCAGCGAGCCCAAAGCTGATGTCAGCCTGATTTTGCGTAATCCGAAAGCCATG
GACAGCGCCCGCAATCAGGTGATGTTTGCGCTCAATGATTATCTCGCAGGGCTGGCGCTTGATCAGTTAA
GCAACCAGGCGTCGGTTGGTGGCATAAGTTTTTCCACCAACGCTAACAACGGCCTTATGGTTAATGCTAA
TGGTTACACCCAGCGTCTGCCGCAGCTGTTCCAGGCATTGCTCGAGGGGTACTTTAGCTATACCGCTACG
GAAGATCAGCTTGAGCAGGCGAAGTCCTGGTATAACCAGATGATGGATTCCGCAGAAAAGGGTAAAGCGT
TTGAGCAGGCGATTATGCCCGCGCAGATGCTCTCGCAAGTGCCGTACTTCTCGCGAGATGAACGGCGTAA
AATTTTGCCCTCCATTACGTTGAAAGAGGTGCTGGCCTATCGCGACGCCTTAAAATCAGGGGCTCGACCA
GAGTTTATGGTTATCGGCAACATGACCGAGGCCCAGGCAACAACGCTGGCACGCGATGTGCAAAAACAGT
TGGGCGCTGATGGTTCAGAGTGGTGTCGAAACAAAGATGTAGTGGTCGATAAAAAACAATCCGTCATCTT
TGAAAAAGCCGGTAACAGCACCGACTCCGCACTGGCAGCGGTATTTGTACCGACTGGCTACGATGAATAC
ACCAGCTCAGCCTATAGCTCTCTGTTGGGGCAGATCGTACAGCCGTGGTTCTACAATCAGTTGCGTACCG
AAGAACAATTGGGCTATGCCGTGTTTGCGTTTCCAATGAGCGTGGGGCGTCAGTGGGGCATGGGCTTCCT
TTTGCAAAGCAATGATAAACAGCCTTCATTCTTGTGGGAGCGTTACAAGGCGTTTTTCCCAACCGCAGAG
GCAAAATTGCGAGCGATGAAGCCAGATGAGTTTGCGCAAATCCAGCAGGCGGTAATTACCCAGATGCTGC
AGGCACCGCAAACGCTCGGCGAAGAAGCATCGAAGTTAAGTAAAGATTTCGATCGCGGCAATATGCGCTT
CGATTCGCGTGATAAAATCGTGGCCCAGATAAAACTGCTGACGCCGCAAAAACTTGCTGATTTCTTCCAT
CAGGCGGTGGTCGAGCCGCAAGGCATGGCTATTCTGTCGCAGATTTCCGGCAGCCAGAACGGGAAAGCCG
AATATGTACACCCTGAAGGCTGGAAAGTGTGGGAGAACGTCAGCGCGTTGCAGCAAACAATGCCCCTGAT
GAGTGAAAAGAATGAGTGA
# Upstream_100_bases:
CATAGGCTGACTCGTGCAGCACAAGATTAAATTCTGGCAGATGATTTGCGTTAACGTGTTGAATCTGGAC
AGAAAATTAAGTTGATTATGAGGTCCGTGA
# Blattner_No_Ontology:
Translation, post-translational modification
# Gene_Position:
2954018-2956906 (Counter Clockwise)
# Centisome_Position:
63.731
# Gene_Name:
ptrA or ptr
# GC_Content:
51.16%
# Metabolic_Importance:
Unknown
# Preceding_Gene:
recB
# Following_Gene:
recC
# Operon_Status:
Yes
# Operon_Components:
recD_recB_ptr Ref: RegulonDB http://kinich.cifn.unam.mx:8850/db/regulondb_cgi.query_simple?v_organism=ECK12&v_table=3&v_name=ptr
# Paralogues:
None
# Copy Number:
Unknown
# RNA_Copy_No.:
Log phase (2max): 0.5
Stationary phase (2max): 0.69
Ref: Nature Biotech., 18, 1262-68, Dec. 2000 (PMID=11101804)
# Genbank_ID_(DNA):
G2367164
# Genbank_ID_(Protein):
AAC75860.1
# SWISS_PROT_(AC_&_ID):
$ PTRA_ECOLI (P05458)
# 2D_Gel_Image:
Not Available
# Other_Databases:
- ECO2DBASE: G095.0
- ECOCYC: EG10786
- EcoGene: EG10786
- EMBL: X04581
- InterPro: IPR011765; IPR001431; IPR007863
- Pfam: PF00675; PF05193
- PIR: F65064
- PROSITE: PS00143
# Pfam_Domain/Function:
PF00675 Insulinase (Peptidase family M16); PF05193 Peptidase M16 inactive domain;
# Homologues:
Organism=Homo sapiens, GI4826770, Length=1019, Positives=47%, Blast Score=352
Organism=Homo sapiens, GI4505453, Length=1219, Positives=44%, Blast Score=259
Organism=Caenorhabditis elegans, GI25146566, Length=1051, Positives=46%, Blast Score=314
Organism=Caenorhabditis elegans, GI32566665, Length=1008, Positives=46%, Blast Score=308
Organism=Caenorhabditis elegans, GI25146563, Length=1067, Positives=46%, Blast Score=308
Organism=Caenorhabditis elegans, GI17557500, Length=980, Positives=44%, Blast Score=275
Organism=Caenorhabditis elegans, GI17557502, Length=845, Positives=45%, Blast Score=258
Organism=Caenorhabditis elegans, GI17532135, Length=745, Positives=50%, Blast Score=186
Organism=Saccharomyces cerevisiae, GI42742289, Length=1027, Positives=46%, Blast Score=343
Organism=Saccharomyces cerevisiae, GI6325379, Length=1208, Positives=42%, Blast Score=107
Organism=Mus musculus, GI13621162, Length=1019, Positives=46%, Blast Score=344
Organism=Mus musculus, GI31559918, Length=1161, Positives=44%, Blast Score=257
Organism=Drosophila melanogaster, GI24667426, Length=1031, Positives=47%, Blast Score=350
Organism=Drosophila melanogaster, GI24641429, Length=1147, Positives=43%, Blast Score=243
Organism=Drosophila melanogaster, GI24667786, Length=1058, Positives=42%, Blast Score=219
# Similarity:
Belongs to the peptidase M16 family.
# EC_Number:
3.4.24.55
# No._of_Amino_Acids:
962 (Translated Protein)
939 (Mature Protein)
# Molecular_Weight:
107709 105114
# Theoretical_pI:
5.91
# Theoretical_pI (Mature):
5.66
# Sequence:
// MPRSTWFKALLLLVALWAPLSQAETGWQPIQETIRKSDKDNRQYQAIRLDNGMVVLLVSD
// PQAVKSLSALVVPVGSLEDPEAYQGLAHYLEHMSLMGSKKYPQADSLAEYLKMHGGSHNA
// STAPYRTAFYLEVENDALPGAVDRLADAIAEPLLDKKYAERERNAVNAELTMARTRDGMR
// MAQVSAETINPAHPGSKFSGGNLETLSDKPGNPVQQALKDFHEKYYSANLMKAVIYSNKP
// LPELAKMAADTFGRVPNKESKKPEITVPVVTDAQKGIIIHYVPALPRKVLRVEFRIDNNS
// AKFRSKTDELITYLIGNRSPGTLSDWLQKQGLVEGISANSDPIVNGNSGVLAISASLTDK
// GLANRDQVVAAIFSYLNLLREKGIDKQYFDELANVLDIDFRYPSITRDMDYVEWLADTMI
// RVPVEHTLDAVNIADRYDAKAVKERLAMMTPQNARIWYISPKEPHNKTAYFVDAPYQVDK
// ISAQTFADWQKKAADIALSLPELNPYIPDDFSLIKSEKKYDHPELIVDESNLRVVYAPSR
// YFASEPKADVSLILRNPKAMDSARNQVMFALNDYLAGLALDQLSNQASVGGISFSTNANN
// GLMVNANGYTQRLPQLFQALLEGYFSYTATEDQLEQAKSWYNQMMDSAEKGKAFEQAIMP
// AQMLSQVPYFSRDERRKILPSITLKEVLAYRDALKSGARPEFMVIGNMTEAQATTLARDV
// QKQLGADGSEWCRNKDVVVDKKQSVIFEKAGNSTDSALAAVFVPTGYDEYTSSAYSSLLG
// QIVQPWFYNQLRTEEQLGYAVFAFPMSVGRQWGMGFLLQSNDKQPSFLWERYKAFFPTAE
// AKLRAMKPDEFAQIQQAVITQMLQAPQTLGEEASKLSKDFDRGNMRFDSRDKIVAQIKLL
// TPQKLADFFHQAVVEPQGMAILSQISGSQNGKAEYVHPEGWKVWENVSALQQTMPLMSEK
// NE
// /\
// ETGWQPIQETIRKSDKDNRQYQAIRLDNGMVVLLVSDPQAVKSLSALVVPVGSLEDPEAY
// QGLAHYLEHMSLMGSKKYPQADSLAEYLKMHGGSHNASTAPYRTAFYLEVENDALPGAVD
// RLADAIAEPLLDKKYAERERNAVNAELTMARTRDGMRMAQVSAETINPAHPGSKFSGGNL
// ETLSDKPGNPVQQALKDFHEKYYSANLMKAVIYSNKPLPELAKMAADTFGRVPNKESKKP
// EITVPVVTDAQKGIIIHYVPALPRKVLRVEFRIDNNSAKFRSKTDELITYLIGNRSPGTL
// SDWLQKQGLVEGISANSDPIVNGNSGVLAISASLTDKGLANRDQVVAAIFSYLNLLREKG
// IDKQYFDELANVLDIDFRYPSITRDMDYVEWLADTMIRVPVEHTLDAVNIADRYDAKAVK
// ERLAMMTPQNARIWYISPKEPHNKTAYFVDAPYQVDKISAQTFADWQKKAADIALSLPEL
// NPYIPDDFSLIKSEKKYDHPELIVDESNLRVVYAPSRYFASEPKADVSLILRNPKAMDSA
// RNQVMFALNDYLAGLALDQLSNQASVGGISFSTNANNGLMVNANGYTQRLPQLFQALLEG
// YFSYTATEDQLEQAKSWYNQMMDSAEKGKAFEQAIMPAQMLSQVPYFSRDERRKILPSIT
// LKEVLAYRDALKSGARPEFMVIGNMTEAQATTLARDVQKQLGADGSEWCRNKDVVVDKKQ
// SVIFEKAGNSTDSALAAVFVPTGYDEYTSSAYSSLLGQIVQPWFYNQLRTEEQLGYAVFA
// FPMSVGRQWGMGFLLQSNDKQPSFLWERYKAFFPTAEAKLRAMKPDEFAQIQQAVITQML
// QAPQTLGEEASKLSKDFDRGNMRFDSRDKIVAQIKLLTPQKLADFFHQAVVEPQGMAILS
// QISGSQNGKAEYVHPEGWKVWENVSALQQTMPLMSEKNE
# PROSITE_Motif:
INSULINASE; PATTERN. PS00143; Insulinase family, zinc-binding region signature. G-x(8,9)-G-x-[STA]-H-[LIVMFY]-[LIVMC]-[DERN]-[HRKL]-[LMFAT]-x-[LFSTH]-x-PA [GSTAN]-[GST]. PDOC00130; //
# Important_Sites:
Signal Chain 1 23
Active_Site 91 91
# Transmembrane:
Not Available
# Cys/Met_Content:
0.1 %Cys (Translated Protein)
3.2 %Met (Translated Protein)
3.3 %Cys+Met (Translated Protein)
0.1 %Cys (Mature Protein)
3.2 %Met (Mature Protein)
3.3 %Cys+Met (Mature Protein)
# Secondary_Structure:
>PTRA_ECOLI (Translated Protein)
MPRSTWFKALLLLVALWAPLSQAETGWQPIQETIRKSDKDNRQYQAIRLDNGMVVLLVSD
CCHHHHHHHHHHHHHHHHHHHHHCCCCCCHHCCCCCCCCCCCCEEEEECCCCEEEEEEEC
PQAVKSLSALVVPVGSLEDPEAYQGLAHYLEHMSLMGSKKYPQADSLAEYLKMHGGSHNA
CCCCEEEEEEEEEECCCCCCCCCCCCHHHHHHHHCCCCCCCCCHHHHHHHHHHHCCCCEE
STAPYRTAFYLEVENDALPGAVDRLADAIAEPLLDKKYAERERNAVNAELTMARTRDGMR
EECCCCEEEEEECCHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHCCCHHH
MAQVSAETINPAHPGSKFSGGNLETLSDKPGNPVQQALKDFHEKYYSANLMKAVIYSNKP
HHHHHHHHHCCCCCCCCCCCCCHHHHHHHCHHHHHHHHHHHHHHHCCCCCEEEEEECCCC
LPELAKMAADTFGRVPNKESKKPEITVPVVTDAQKGIIIHYVPALPRKVLRVEFRIDNNS
HHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCEEECCCCCCCCEEEEEEEECCCCC
AKFRSKTDELITYLIGNRSPGTLSDWLQKQGLVEGISANSDPIVNGNSGVLAISASLTDK
HHHHHHHHHHHHHHHCCCCCHHHHHHHHHCCCEEEECCCCCCCCCCCEEEEEEEEEECCH
GLANRDQVVAAIFSYLNLLREKGIDKQYFDELANVLDIDFRYPSITRDMDYVEWLADTMI
HHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHH
RVPVEHTLDAVNIADRYDAKAVKERLAMMTPQNARIWYISPKEPHNKTAYFVDAPYQVDK
CCCHHHHCCCCHHHHHCCHHHHHHHHHHCCCCCCEEEEEECCCCCCCCCCCCCCCHHCCC
ISAQTFADWQKKAADIALSLPELNPYIPDDFSLIKSEKKYDHPELIVDESNLRVVYAPSR
CCHHHHHHCCCCCCCCCCCCCCCCCCCCCCCEECCCCCCCCCCEEEEECCCCEEEEEECC
YFASEPKADVSLILRNPKAMDSARNQVMFALNDYLAGLALDQLSNQASVGGISFSTNANN
CCCEECEEEEEEEECCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHEEEECCCC
GLMVNANGYTQRLPQLFQALLEGYFSYTATEDQLEQAKSWYNQMMDSAEKGKAFEQAIMP
CEEEEEECCCCCHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHCCCCHHCCCHHHHHHH
AQMLSQVPYFSRDERRKILPSITLKEVLAYRDALKSGARPEFMVIGNMTEAQATTLARDV
HHHHCCCCCCCHHHHHHHHHHCCHHHHHHHHHHHHHHCCEEEEEECCCCHHHHHHHHHHH
QKQLGADGSEWCRNKDVVVDKKQSVIFEKAGNSTDSALAAVFVPTGYDEYTSSAYSSLLG
HHHHCCCCCCCCCCCCEEECCCCEEEEECCCCCCCCEEEEEEECCCCCCCHHHHHHHHHH
QIVQPWFYNQLRTEEQLGYAVFAFPMSVGRQWGMGFLLQSNDKQPSFLWERYKAFFPTAE
HHHHHCCCCHHHHHHHCCEEEEEEEEEECCCCEEEEEEECCCCCHHHHHHHHHHHHHHHH
AKLRAMKPDEFAQIQQAVITQMLQAPQTLGEEASKLSKDFDRGNMRFDSRDKIVAQIKLL
HHHHCCCHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHCC
TPQKLADFFHQAVVEPQGMAILSQISGSQNGKAEYVHPEGWKVWENVSALQQTMPLMSEK
CHHHHHHHHHHHCCCHHCEEEEEEEEEEECCEEEEEECCCCEEECHHHHHHHHCCCCCCC
NE
CC
/\
>PTRA_ECOLI (Mature Protein)
ETGWQPIQETIRKSDKDNRQYQAIRLDNGMVVLLVSDPQAVKSLSALVVPVGSLEDPEAY
CCCCCCHHCCCCCCCCCCCCEEEEECCCCEEEEEEECCCCCEEEEEEEEEECCCCCCCCC
QGLAHYLEHMSLMGSKKYPQADSLAEYLKMHGGSHNASTAPYRTAFYLEVENDALPGAVD
CCCHHHHHHHHCCCCCCCCCHHHHHHHHHHHCCCCEEEECCCCEEEEEECCHHHHHHHHH
RLADAIAEPLLDKKYAERERNAVNAELTMARTRDGMRMAQVSAETINPAHPGSKFSGGNL
HHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHCCCCCCCCCCCCCH
ETLSDKPGNPVQQALKDFHEKYYSANLMKAVIYSNKPLPELAKMAADTFGRVPNKESKKP
HHHHHHCHHHHHHHHHHHHHHHCCCCCEEEEEECCCCHHHHHHHHHHHHCCCCCCCCCCC
EITVPVVTDAQKGIIIHYVPALPRKVLRVEFRIDNNSAKFRSKTDELITYLIGNRSPGTL
CCCCCCCCCCCCCEEECCCCCCCCEEEEEEEECCCCCHHHHHHHHHHHHHHHCCCCCHHH
SDWLQKQGLVEGISANSDPIVNGNSGVLAISASLTDKGLANRDQVVAAIFSYLNLLREKG
HHHHHHCCCEEEECCCCCCCCCCCEEEEEEEEEECCHHHHHHHHHHHHHHHHHHHHHHCC
IDKQYFDELANVLDIDFRYPSITRDMDYVEWLADTMIRVPVEHTLDAVNIADRYDAKAVK
CCHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHCCCHHHHCCCCHHHHHCCHHHHH
ERLAMMTPQNARIWYISPKEPHNKTAYFVDAPYQVDKISAQTFADWQKKAADIALSLPEL
HHHHHCCCCCCEEEEEECCCCCCCCCCCCCCCHHCCCCCHHHHHHCCCCCCCCCCCCCCC
NPYIPDDFSLIKSEKKYDHPELIVDESNLRVVYAPSRYFASEPKADVSLILRNPKAMDSA
CCCCCCCCEECCCCCCCCCCEEEEECCCCEEEEEECCCCCEECEEEEEEEECCCHHHHHH
RNQVMFALNDYLAGLALDQLSNQASVGGISFSTNANNGLMVNANGYTQRLPQLFQALLEG
HHHHHHHHHHHHHHHHHHHHCCHHHHHHHEEEECCCCCEEEEEECCCCCHHHHHHHHHHH
YFSYTATEDQLEQAKSWYNQMMDSAEKGKAFEQAIMPAQMLSQVPYFSRDERRKILPSIT
HHCCCCCHHHHHHHHHHHHHHCCCCHHCCCHHHHHHHHHHHCCCCCCCHHHHHHHHHHCC
LKEVLAYRDALKSGARPEFMVIGNMTEAQATTLARDVQKQLGADGSEWCRNKDVVVDKKQ
HHHHHHHHHHHHHHCCEEEEEECCCCHHHHHHHHHHHHHHHCCCCCCCCCCCCEEECCCC
SVIFEKAGNSTDSALAAVFVPTGYDEYTSSAYSSLLGQIVQPWFYNQLRTEEQLGYAVFA
EEEEECCCCCCCCEEEEEEECCCCCCCHHHHHHHHHHHHHHHCCCCHHHHHHHCCEEEEE
FPMSVGRQWGMGFLLQSNDKQPSFLWERYKAFFPTAEAKLRAMKPDEFAQIQQAVITQML
EEEEECCCCEEEEEEECCCCCHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHH
QAPQTLGEEASKLSKDFDRGNMRFDSRDKIVAQIKLLTPQKLADFFHQAVVEPQGMAILS
CCCCCHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHCCCHHHHHHHHHHHCCCHHCEEEEE
QISGSQNGKAEYVHPEGWKVWENVSALQQTMPLMSEKNE
EEEEEECCEEEEEECCCCEEECHHHHHHHHCCCCCCCCC
# PDB_Accession:
& Model Based on 1HR6 (40-268)
# Resolution:
Not Available
# Structure_CLASS:
Alpha Beta
# Quaternary_Structure:
monomer
# Interacting_Partners:
Unknown
# Cofactors:
Binds 1 zinc ion per subunit.
# Metals_Ions:
--Ca2+ --Co2+ --Mn2+ --Zn2+
# Kcat_Value_[1/min]:
174
# Specific_Activity_[micromol/min/mg]:
Not Available
# Km_Value_[mM]:
0.0127 {glucagon}
0.0077
# Substrates:
Peptide + H2O
# Products:
Hydrolyzed peptide
# Specific_Reaction:
Peptide + H2O = hydrolyzed peptide
# General_Reaction:
Hydrolysis of peptide bonds;
# Inhibitor:
--1,10-Phenanthroline --2,6-Pyridinedicarboxylic acid --Bacitracin --Ca2+ --Chelating agents --Co2+ --DTT --Dynorphin A(1-13) --EDTA --Mn2+ --More --Tetraethylenepentamine --Zincov --Zn2+
# Priority:
1.0
# Status:
Selected, Cloned, Expressed, Work Stopped
# Availability:
Montreal-Kingston Bacterial Structural Genomics Initiative
#END_ECARDFILE
#BEGIN_ECARDFILE
# Entry_ID:
CC3513A.1
# Accession_No.:
UA0003513
# Name:
Hypothetical protein yfiR precursor
# Alternate_Names:
Not Available
# General_Function:
Not Available
# COG_Function:
Transcription (code K)
# COG_ID:
COG1309 Transcriptional regulator (Evalue = 2e-94)
# Specific_Function:
Not Available
# Riley_Gene_Function:
conserved protein
# Riley_Cell_Function:
>>>
Not Available
# Gene_Ontology:
>>>
Function: Not Available
||
>>>
Process: Not Available
||
>>>
Component: Not Available
# Location:
Cytoplasm
# Blattner_Number:
b2603
# Gene_Sequence:
ATGCGTTTTTCTCACCGACTGTTCTTACTTCTGATTCTCCTGCTGACGGGAGCACCAATACTCGCTCAGG
AGCCTTCTGACGTTGCGAAAAACGTGCGTATGATGGTTTCCGGTATTGTCAGTTACACCCGCTGGCCTGC
GCTATCAGGGCCACCAAAGTTATGTATCTTTTCATCTTCACGTTTTAGTACCGCCCTACAAGAGAATGCC
GCGACATCTTTGCCTTATCTGCCTGTCATCATTCACACTCAACAAGAGGCGATGATTTCAGGCTGCAATG
GTTTTTATTTTGGCAACGAGTCACCGACATTCCAGATGGAATTAACCGAACAATATCCGTCAAAGGCGTT
ATTATTAATTGCCGAACAAAATACCGAGTGCATTATTGGTAGCGCCTTTTGTCTGATCATCCACAATAAT
GACGTCAGATTTGCCGTAAACCTGGATGCCTTATCGCGTAGCGGTGTAAAGGTCAACCCGGATGTCTTAA
TGCTCGCACGGAAGAAAAATGATGGATAA
# Upstream_100_bases:
ATTTCTCACATTGATGACGGTCGCATGAAAAAATGATATTTTAATGAGCATTCTGAAAAAATATCGATGC
ATTTCGAGCGAAGATGGTGGGGATCCCTGA
# Blattner_No_Ontology:
Hypothetical, unclassified, unknown
# Gene_Position:
2739897-2740415 (Clockwise)
# Centisome_Position:
59.054
# Gene_Name:
yfiR
# GC_Content:
45.66%
# Metabolic_Importance:
Unknown
# Preceding_Gene:
yfiL
# Following_Gene:
yfiN
# Operon_Status:
Yes
# Operon_Components:
yfiR_yfiN_yfiB Ref: RegulonDB http://kinich.cifn.unam.mx:8850/db/regulondb_cgi.query_simple?v_organism=ECK12&v_table=3&v_name=yfiR
# Paralogues:
None
# Copy Number:
Unknown
# RNA_Copy_No.:
Log phase (2max): 0.06
Stationary phase (2max): 0.16
Ref: Nature Biotech., 18, 1262-68, Dec. 2000 (PMID=11101804)
# Genbank_ID_(DNA):
G1788955
# Genbank_ID_(Protein):
AAC75652.1
# SWISS_PROT_(AC_&_ID):
$ YFIR_ECOLI (P64548)
# 2D_Gel_Image:
Not Available
# Other_Databases:
- ECOCYC: EG14225
- EcoGene: EG14225
- EMBL: U00096
- PIR: F65038
# Pfam_Domain/Function:
None
# Homologues:
Not Available
# Similarity:
Not Available
# EC_Number:
Not Available
# No._of_Amino_Acids:
172 (Translated Protein)
150 (Mature Protein)
# Molecular_Weight:
18978 16487
# Theoretical_pI:
7.95
# Theoretical_pI (Mature):
6.50
# Sequence:
// MRFSHRLFLLLILLLTGAPILAQEPSDVAKNVRMMVSGIVSYTRWPALSGPPKLCIFSSS
// RFSTALQENAATSLPYLPVIIHTQQEAMISGCNGFYFGNESPTFQMELTEQYPSKALLLI
// AEQNTECIIGSAFCLIIHNNDVRFAVNLDALSRSGVKVNPDVLMLARKKNDG
// /\
// QEPSDVAKNVRMMVSGIVSYTRWPALSGPPKLCIFSSSRFSTALQENAATSLPYLPVIIH
// TQQEAMISGCNGFYFGNESPTFQMELTEQYPSKALLLIAEQNTECIIGSAFCLIIHNNDV
// RFAVNLDALSRSGVKVNPDVLMLARKKNDG
# PROSITE_Motif:
Not Available
# Important_Sites:
Signal Chain 1 22
# Transmembrane:
Not Available
# Cys/Met_Content:
2.3 %Cys (Translated Protein)
3.5 %Met (Translated Protein)
5.8 %Cys+Met (Translated Protein)
2.7 %Cys (Mature Protein)
3.3 %Met (Mature Protein)
6.0 %Cys+Met (Mature Protein)
# Secondary_Structure:
>YFIR_ECOLI (Translated Protein)
MRFSHRLFLLLILLLTGAPILAQEPSDVAKNVRMMVSGIVSYTRWPALSGPPKLCIFSSS
CCCCHHHHHHHHHHHCCCCHHCCCCHHHHHHHHHHHHHHHHHHCCCCCCCCCEEEEEEHH
RFSTALQENAATSLPYLPVIIHTQQEAMISGCNGFYFGNESPTFQMELTEQYPSKALLLI
HHHHHHHHHHHHHCCCCCCEEEEHHHHHHCCCCEEEECCCCHHHHHHHHHHHCCCCEEEE
AEQNTECIIGSAFCLIIHNNDVRFAVNLDALSRSGVKVNPDVLMLARKKNDG
ECCCCCEEEEEEEEEEECCCCEEEEEEHHHHHHCCCEECHHHHHHHHHCCCC
/\
>YFIR_ECOLI (Mature Protein)
QEPSDVAKNVRMMVSGIVSYTRWPALSGPPKLCIFSSSRFSTALQENAATSLPYLPVIIH
CCCHHHHHHHHHHHHHHHHHHCCCCCCCCCEEEEEEHHHHHHHHHHHHHHHCCCCCCEEE
TQQEAMISGCNGFYFGNESPTFQMELTEQYPSKALLLIAEQNTECIIGSAFCLIIHNNDV
EHHHHHHCCCCEEEECCCCHHHHHHHHHHHCCCCEEEEECCCCCEEEEEEEEEEECCCCE
RFAVNLDALSRSGVKVNPDVLMLARKKNDG
EEEEEHHHHHHCCCEECHHHHHHHHHCCCC
# PDB_Accession:
& Not Available
# Resolution:
Not Available
# Structure_CLASS:
Alpha Beta
# Quaternary_Structure:
Not Available
# Interacting_Partners:
Not Available
# Cofactors:
Not Available
# Metals_Ions:
Not Available
# Kcat_Value_[1/min]:
Not Available
# Specific_Activity_[micromol/min/mg]:
Not Available
# Km_Value_[mM]:
Not Available
# Substrates:
Not Available
# Products:
Not Available
# Specific_Reaction:
Not Available
# General_Reaction:
Not Available
# Inhibitor:
Not Available
# Priority:
9.4
# Status:
Not Available
# Availability:
Not Available
#END_ECARDFILE
#BEGIN_ECARDFILE
# Entry_ID:
CC2895A.1
# Accession_No.:
UA0002895
# Name:
Ferritin-like protein 2
# Alternate_Names:
Not Available
# General_Function:
Transport and binding proteins; Ferritin-like
# COG_Function:
Inorganic ion transport and metabolism (code P)
# COG_ID:
COG1528 Ferritin-like protein (Evalue = 1e-90)
# Specific_Function:
Not Available
# Riley_Gene_Function:
putative ferritin-like protein
# Riley_Cell_Function:
>>>
Cell processes
Adaptation to stress
Fe aquisition
||
>>>
Location of gene products
Cytoplasm
# Gene_Ontology:
>>>
Function: binding
||
>>>
Function: binding
Function: ion binding
Function: cation binding
Function: transition metal ion binding
Function: iron ion binding
Function: ferric iron binding
||
>>>
Function: metal ion binding
Function: transition metal ion binding
Function: iron ion binding
Function: ferric iron binding
||
>>>
Process: physiological process
Process: cellular physiological process
Process: transport
Process: ion transport
Process: cation transport
Process: di-, tri-valent inorganic cation transport
Process: transition metal ion transport
Process: iron ion transport
||
>>>
Process: metal ion transport
Process: transition metal ion transport
Process: iron ion transport
||
>>>
Process: localization
Process: establishment of localization
Process: transport
Process: ion transport
Process: cation transport
Process: di-, tri-valent inorganic cation transport
Process: transition metal ion transport
Process: iron ion transport
||
>>>
Process: metal ion transport
Process: transition metal ion transport
Process: iron ion transport
||
>>>
Process: cellular process
Process: cellular physiological process
Process: transport
Process: ion transport
Process: cation transport
Process: di-, tri-valent inorganic cation transport
Process: transition metal ion transport
Process: iron ion transport
||
>>>
Process: metal ion transport
Process: transition metal ion transport
Process: iron ion transport
Process: physiological process
Process: homeostasis
Process: cell homeostasis
Process: cell ion homeostasis
Process: cation homeostasis
Process: metal ion homeostasis
Process: transition metal ion homeostasis
Process: iron ion homeostasis
||
>>>
Process: di-, tri-valent inorganic cation homeostasis
Process: iron ion homeostasis
||
>>>
Process: ion homeostasis
Process: cell ion homeostasis
Process: cation homeostasis
Process: metal ion homeostasis
Process: transition metal ion homeostasis
Process: iron ion homeostasis
||
>>>
Process: di-, tri-valent inorganic cation homeostasis
Process: iron ion homeostasis
||
>>>
Process: cellular physiological process
Process: cell homeostasis
Process: cell ion homeostasis
Process: cation homeostasis
Process: metal ion homeostasis
Process: transition metal ion homeostasis
Process: iron ion homeostasis
||
>>>
Process: di-, tri-valent inorganic cation homeostasis
Process: iron ion homeostasis
||
>>>
Process: cellular process
Process: cellular physiological process
Process: cell homeostasis
Process: cell ion homeostasis
Process: cation homeostasis
Process: metal ion homeostasis
Process: transition metal ion homeostasis
Process: iron ion homeostasis
||
>>>
Process: di-, tri-valent inorganic cation homeostasis
Process: iron ion homeostasis
||
>>>
Component: Not Available
# Location:
Cytoplasm
# Blattner_Number:
b1902
# Gene_Sequence:
ATGGCAACCGCTGGAATGCTTCTCAAACTCAACTCTCAAATGAACCGCGAGTTTTACGCATCCAATCTCT
ACCTTCACCTGAGTAACTGGTGTTCTGAACAGAGTCTGAACGGCACCGCCACTTTCCTTCGCGCCCAGGC
ACAGAGTAATGTGACCCAAATGATGCGCATGTTTAACTTTATGAAGAGTGTCGGCGCTACCCCCATCGTT
AAAGCCATTGATGTTCCCGGTGAAAAACTGAACTCTCTGGAAGAACTGTTCCAAAAAACGATGGAAGAAT
ACGAGCAACGTTCTAGTACGTTGGCACAGTTAGCCGATGAAGCGAAAGAACTGAATGATGATTCAACCGT
CAATTTCCTGCGCGATCTGGAAAAAGAACAGCAGCATGATGGTCTGTTGCTGCAAACCATTCTTGATGAA
GTGCGCAGTGCGAAACTTGCGGGTATGTGCCCTGTGCAGACCGACCAACATGTTCTGAATGTCGTGTCAC
ACCAGCTGCATTGA
# Upstream_100_bases:
CACATTTCGGACCGGCAGAAAGGAATTATTCTGCAAACAGTAATTATGGTGTTTTGATTTATCTTGCACC
TCTCCACTTCTGGATATAAGGATATTAGGT
# Blattner_No_Ontology:
Hypothetical, unclassified, unknown
# Gene_Position:
1984949-1985452 (Clockwise)
# Centisome_Position:
42.782
# Gene_Name:
ftnB
# GC_Content:
47.82%
# Metabolic_Importance:
Unknown
# Preceding_Gene:
araF
# Following_Gene:
yecJ
# Operon_Status:
No
# Operon_Components:
None
# Paralogues:
b1905 (ftnA) 36;
# Copy Number:
Unknown
# RNA_Copy_No.:
Log phase (2max): 0.04
Stationary phase (2max): 0.07
Ref: Nature Biotech., 18, 1262-68, Dec. 2000 (PMID=11101804)
# Genbank_ID_(DNA):
G1788212
# Genbank_ID_(Protein):
AAC74972.1
# SWISS_PROT_(AC_&_ID):
$ FTNB_ECOLI (P0A9A2)
# 2D_Gel_Image:
Not Available
# Other_Databases:
- ECOCYC: EG13175
- EcoGene: EG13175
- EMBL: U39484
- InterPro: IPR001519; IPR009078; IPR008331; IPR009040; IPR012347
- Pfam: PF00210
- PIR: F64953
- PROSITE: PS50905
# Pfam_Domain/Function:
PF00210 Ferritin-like domain
# Homologues:
Not Available
# Similarity:
Belongs to the ferritin family. Prokaryotic subfamily. Contains 1 ferritin-like diiron domain.
# EC_Number:
Not Available
# No._of_Amino_Acids:
167 (Translated Protein)
166 (Mature Protein)
# Molecular_Weight:
18895 18764
# Theoretical_pI:
4.98
# Theoretical_pI (Mature):
4.98
# Sequence:
// MATAGMLLKLNSQMNREFYASNLYLHLSNWCSEQSLNGTATFLRAQAQSNVTQMMRMFNF
// MKSVGATPIVKAIDVPGEKLNSLEELFQKTMEEYEQRSSTLAQLADEAKELNDDSTVNFL
// RDLEKEQQHDGLLLQTILDEVRSAKLAGMCPVQTDQHVLNVVSHQLH
// /\
// ATAGMLLKLNSQMNREFYASNLYLHLSNWCSEQSLNGTATFLRAQAQSNVTQMMRMFNFM
// KSVGATPIVKAIDVPGEKLNSLEELFQKTMEEYEQRSSTLAQLADEAKELNDDSTVNFLR
// DLEKEQQHDGLLLQTILDEVRSAKLAGMCPVQTDQHVLNVVSHQLH
# PROSITE_Motif:
Not Available
# Important_Sites:
Not Available
# Transmembrane:
Not Available
# Cys/Met_Content:
1.2 %Cys (Translated Protein)
5.4 %Met (Translated Protein)
6.6 %Cys+Met (Translated Protein)
1.2 %Cys (Mature Protein)
4.8 %Met (Mature Protein)
6.0 %Cys+Met (Mature Protein)
# Secondary_Structure_(PDB):
LKPEMIEKLNEQMNLELYSSLLYQQMSAWCSYHTFEGAAAFLRRHAQEEMT
CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHH
HMQRLFDYLTDTGNLPRINTVESPFAEYSSLDELFQETYKHEQLITQKINE
HHHHHHHHHHHHCCCCCCEEEECCCCCCCCHHHHHHHHHHHHHHHHHHHHH
LAHAAMTNQDYPTFNFLQWYVSEQHEEEKLFKSIIDKLSLAGKSGEGLYFI
HHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHH
DKELSTLD
HHHHCCCC
# PDB_Accession:
& Model Based on 1EUM (2-153)
# Resolution:
Not Available
# Structure_CLASS:
Mainly Alpha
# Quaternary_Structure:
Not Available
# Interacting_Partners:
Not Available
# Cofactors:
Not Available
# Metals_Ions:
--Iron (By similarity)
# Kcat_Value_[1/min]:
Not Available
# Specific_Activity_[micromol/min/mg]:
Not Available
# Km_Value_[mM]:
Not Available
# Substrates:
Not Available
# Products:
Not Available
# Specific_Reaction:
Not Available
# General_Reaction:
Not Available
# Inhibitor:
Not Available
# Priority:
1.0
# Status:
Not Available
# Availability:
Not Available
#END_ECARDFILE
#BEGIN_ECARDFILE
# Entry_ID:
CC3726A.1
# Accession_No.:
UA0003726
# Name:
Putative colanic acid biosynthesis acetyltransferase wcaB
# Alternate_Names:
Not Available
# General_Function:
Fatty acid and phospholipid metabolism; Trimeric LpxA-like enzymes
# COG_Function:
Amino acid transport and metabolism (code E)
# COG_ID:
COG1045 Serine acetyltransferase (Evalue = 3e-91)
# Specific_Function:
Not Available
# Riley_Gene_Function:
putative acyl transferase, colanic acid synthesis
# Riley_Cell_Function:
>>>
Metabolism
Macromolecules (cellular constituent) biosynthesis
Colanic acid (M antigen)
# Gene_Ontology:
>>>
Function: Not Available
||
>>>
Process: Not Available
||
>>>
Component: Not Available
# Location:
Cytoplasm
# Blattner_Number:
b2058
# Gene_Sequence:
ATGCTGGAAGATCTGCGCGCCAACAGCTGGAGTTTACGCCCGTGCTGCATGGTTCTTGCCTATCGTGTTG
CTCATTTTTGTTCGGTGTGGCGCAAAAAGAACGTCCTCAACAATCTGTGGGCGGCCCCGCTGCTGGTGCT
GTATCGCATTATCACCGAATGCTTTTTCGGTTATGAAATCCAGGCTGCCGCGACCATTGGCCGCCGCTTT
ACTATCCATCACGGTTACGCCGTCGTGATCAATAAAAACGTGGTAGCGGGGGATGATTTTACCATTCGCC
ACGGCGTCACTATCGGCAATCGTGGTGCCGATAACATGGCATGTCCACACATTGGCAACGGCGTCGAACT
CGGTGCCAACGTCATTATTCTTGGTGATATCACGCTTGGTAACAACGTCACCGTGGGCGCGGGCAGCGTG
GTGCTCGACTCTGTCCCGGACAACGCGCTGGTGGTGGGAGAAAAAGCGCGAGTGAAGGTAATTAAATGA
# Upstream_100_bases:
ACCAGATCCGCAATAAACGTATGACCTGGCGCACTTTGCTGACGCTGCTGTCGGTGCGTAACGGCAAACG
TCTGGCTGATGGTATTCGGGGGCGCTAAAG
# Blattner_No_Ontology:
Amino acid biosynthesis and metabolism
# Gene_Position:
2130091-2130579 (Counter Clockwise)
# Centisome_Position:
45.921
# Gene_Name:
wcaB
# GC_Content:
53.99%
# Metabolic_Importance:
Non_Essential
# Preceding_Gene:
wcaC
# Following_Gene:
wcaA
# Operon_Status:
Yes
# Operon_Components:
wcaC_wcaB_wcaA Ref: RegulonDB http://kinich.cifn.unam.mx:8850/db/regulondb_cgi.query_simple?v_organism=ECK12&v_table=3&v_name=wcaB
# Paralogues:
b0459 (maa) 31;
# Copy Number:
Unknown
# RNA_Copy_No.:
Log phase (2max): 0.1
Stationary phase (2max): 0.08
Ref: Nature Biotech., 18, 1262-68, Dec. 2000 (PMID=11101804)
# Genbank_ID_(DNA):
G1788371
# Genbank_ID_(Protein):
AAC75119.1
# SWISS_PROT_(AC_&_ID):
$ WCAB_ECOLI (P0ACC9)
# 2D_Gel_Image:
Not Available
# Other_Databases:
- ECOCYC: EG13570
- EcoGene: EG13570
- EMBL: U38473
- InterPro: IPR001451; IPR011004
- Pfam: PF00132
- PIR: A64972
- PROSITE: PS00101
# Pfam_Domain/Function:
PF00132 Bacterial transferase hexapeptide (three repeats)
# Homologues:
Not Available
# Similarity:
Belongs to the transferase hexapeptide repeat family.
# EC_Number:
2.3.1.-
# No._of_Amino_Acids:
162 (Translated Protein)
162 (Mature Protein)
# Molecular_Weight:
17616 17616
# Theoretical_pI:
8.76
# Theoretical_pI (Mature):
8.76
# Sequence:
// MLEDLRANSWSLRPCCMVLAYRVAHFCSVWRKKNVLNNLWAAPLLVLYRIITECFFGYEI
// QAAATIGRRFTIHHGYAVVINKNVVAGDDFTIRHGVTIGNRGADNMACPHIGNGVELGAN
// VIILGDITLGNNVTVGAGSVVLDSVPDNALVVGEKARVKVIK
// /\
// MLEDLRANSWSLRPCCMVLAYRVAHFCSVWRKKNVLNNLWAAPLLVLYRIITECFFGYEI
// QAAATIGRRFTIHHGYAVVINKNVVAGDDFTIRHGVTIGNRGADNMACPHIGNGVELGAN
// VIILGDITLGNNVTVGAGSVVLDSVPDNALVVGEKARVKVIK
# PROSITE_Motif:
HEXAPEP_TRANSFERASES; PATTERN. PS00101; Hexapeptide-repeat containing-transferases signature. [LIV]-[GAED]-x(2)-[STAV]-x-[LIV]-x(3)-[LIVAC]-x-[LIV]-[GAED]-x(2)- PA [STAVR]-x-[LIV]-[GAED]-x(2)-[STAV]-x-[LIV]-x(3)-[LIV]. PDOC00094; //
# Important_Sites:
Not Available
# Transmembrane:
Not Available
# Cys/Met_Content:
3.1 %Cys (Translated Protein)
1.9 %Met (Translated Protein)
4.9 %Cys+Met (Translated Protein)
3.1 %Cys (Mature Protein)
1.9 %Met (Mature Protein)
4.9 %Cys+Met (Mature Protein)
# Secondary_Structure:
>WCAB_ECOLI (Translated Protein)
MLEDLRANSWSLRPCCMVLAYRVAHFCSVWRKKNVLNNLWAAPLLVLYRIITECFFGYEI
CCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHEEEEEEE
QAAATIGRRFTIHHGYAVVINKNVVAGDDFTIRHGVTIGNRGADNMACPHIGNGVELGAN
CCCCEECCCCEECCCCEEEECCCEEECCCCEECCCCEEECCCCCCCCCCEECCCCEECCC
VIILGDITLGNNVTVGAGSVVLDSVPDNALVVGEKARVKVIK
CEECCCEEECCCCEECCCCEECCCCCCCCEEEEECCEEEEEC
/\
>WCAB_ECOLI (Mature Protein)
LEDLRANSWSLRPCCMVLAYRVAHFCSVWRKKNVLNNLWAAPLLVLYRIITECFFGYEIQ
CCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHEEEEEEEC
AAATIGRRFTIHHGYAVVINKNVVAGDDFTIRHGVTIGNRGADNMACPHIGNGVELGANV
CCCEECCCCEECCCCEEEECCCEEECCCCEECCCCEEECCCCCCCCCCEECCCCEECCCC
IILGDITLGNNVTVGAGSVVLDSVPDNALVVGEKARVKVIK
EECCCEEECCCCEECCCCEECCCCCCCCEEEEECCEEEEEC
# PDB_Accession:
& Not Available
# Resolution:
Not Available
# Structure_CLASS:
Alpha Beta
# Quaternary_Structure:
Not Available
# Interacting_Partners:
Not Available
# Cofactors:
Not Available
# Metals_Ions:
Not Available
# Kcat_Value_[1/min]:
Not Available
# Specific_Activity_[micromol/min/mg]:
Not Available
# Km_Value_[mM]:
Not Available
# Substrates:
Not Available
# Products:
Not Available
# Specific_Reaction:
Not Available
# General_Reaction:
Not Available
# Inhibitor:
Not Available
# Priority:
7.6
# Status:
Not Available
# Availability:
Not Available
#END_ECARDFILE
#BEGIN_ECARDFILE
# Entry_ID:
CC0361A.1
# Accession_No.:
UA0000361
# Name:
Ferrichrome transport system permease protein fhuB
# Alternate_Names:
Ferrichrome uptake protein fhuB
# General_Function:
Transport and binding proteins; Member of the ATP-binding Cassette (ABC) Superfamily
# COG_Function:
Inorganic ion transport and metabolism (code P)
# COG_ID:
COG0609 ABC-type Fe3+-siderophore transport system, permease component (Evalue = 0.0)
# Specific_Function:
Involved in the high-affinity transport of Fe(3+)- ferrichrome into the E.coli cell. Fused genes: hydroxamate-dependent iron transport protein, ABC superfamily: membrane component (aa1-330) and membrane component (aa331-660)
# Riley_Gene_Function:
fused iron-hydroxamate transporter subunits of ABC superfamily: membrane components
# Riley_Cell_Function:
>>>
Transport
Primary Active Transporters
Pyrophosphate Bond (ATP; GTP; P2) Hydrolysis-driven Active Transporters
The ATP-binding Cassette (ABC) Superfamily + ABC-type Uptake Permeases
membrane component
||
>>>
Transport
substrate
ferrichrome
||
>>>
Cell structure
Membrane
||
>>>
Location of gene products
Inner membrane
# Gene_Ontology:
>>>
Function: transporter activity
||
>>>
Function: transporter activity
Function: organic acid transporter activity
Function: organic acid:sodium symporter activity
Function: sodium:dicarboxylate symporter activity
||
>>>
Function: carboxylic acid transporter activity
Function: dicarboxylic acid transporter activity
Function: sodium:dicarboxylate symporter activity
||
>>>
Function: carrier activity
Function: electrochemical potential-driven transporter activity
Function: porter activity
Function: symporter activity
Function: solute:cation symporter activity
Function: solute:sodium symporter activity
Function: organic acid:sodium symporter activity
Function: sodium:dicarboxylate symporter activity
||
>>>
Function: anion:cation symporter activity
Function: sodium:dicarboxylate symporter activity
||
>>>
Function: ion transporter activity
Function: cation transporter activity
Function: solute:cation symporter activity
Function: solute:sodium symporter activity
Function: organic acid:sodium symporter activity
Function: sodium:dicarboxylate symporter activity
||
>>>
Function: anion:cation symporter activity
Function: sodium:dicarboxylate symporter activity
||
>>>
Function: anion transporter activity
Function: anion:cation symporter activity
Function: sodium:dicarboxylate symporter activity
||
>>>
Process: physiological process
Process: cellular physiological process
Process: transport
||
>>>
Process: localization
Process: establishment of localization
Process: transport
||
>>>
Process: cellular process
Process: cellular physiological process
Process: transport
Process: physiological process
Process: cellular physiological process
Process: transport
Process: organic acid transport
Process: carboxylic acid transport
Process: dicarboxylic acid transport
||
>>>
Process: localization
Process: establishment of localization
Process: transport
Process: organic acid transport
Process: carboxylic acid transport
Process: dicarboxylic acid transport
||
>>>
Process: cellular process
Process: cellular physiological process
Process: transport
Process: organic acid transport
Process: carboxylic acid transport
Process: dicarboxylic acid transport
||
>>>
Component: cell
Component: membrane
||
>>>
Component: cell
Component: membrane
# Location:
Integral Membrane Protein. Inner Membrane
# Blattner_Number:
b0153
# Gene_Sequence:
GTGAGTAAACGAATTGCGCTTTTCCCGGCGTTATTGCTGGCGCTGTTAGTGATTGTCGCTACGGCGCTCA
CCTGGATGAACTTCTCGCAGGCGCTGCCGCGTAGCCAGTGGGCGCAGGCTGCCTGGTCGCCGGATATTGA
CGTCATCGAGCAGATGATTTTTCACTACAGCTTGTTGCCGCGTCTGGCGATTTCGCTGCTGGTGGGCGCG
GGTCTGGGGCTGGTGGGCGTGCTGTTTCAGCAAGTGCTGCGTAACCCGCTGGCGGAGCCGACGACGCTTG
GCGTTGCTACAGGCGCGCAACTGGGGATTACCGTCACTACGCTCTGGGCGATCCCTGGTGCGATGGCGAG
CCAGTTTGCTGCGCAGGCAGGGGCTTGTGTTGTTGGCTTAATTGTCTTTGGCGTCGCGTGGGGGAAACGG
CTGTCGCCGGTAACGCTGATTCTCGCGGGGTTGGTAGTGAGCCTTTATTGCGGCGCAATCAATCAGTTAC
TGGTTATCTTCCATCATGACCAACTGCAAAGCATGTTTCTGTGGAGCACTGGAACGCTGACGCAAACCGA
CTGGGGCGGCGTTGAGCGTTTATGGCCGCAGCTGCTGGGCGGTGTGATGCTGACGTTGCTGCTACTTCGT
CCGTTAACCCTGATGGGGCTTGATGATGGCGTGGCGCGCAATCTCGGGCTGGCCTTGTCGCTTGCGCGTC
TGGCAGCGCTGTCGCTGGCGATTGTCATCAGTGCGCTGCTGGTGAACGCTGTGGGGATTATCGGCTTTAT
CGGGTTGTTCGCGCCGCTGCTGGCAAAAATGCTGGGGGCGCGGCGTCTGCTGCCACGACTGATGCTGGCG
TCGTTGATTGGTGCGCTGATCCTCTGGCTTTCCGATCAAATCATCCTCTGGCTGACTCGCGTGTGGATGG
AAGTGTCCACCGGTTCGGTCACTGCGTTGATCGGTGCGCCGCTGCTACTGTGGCTGTTGCCGCGTTTACG
CAGCATTAGCGCGCCGGATATGAAGGTCAACGATCGTGTCGCGGCTGAACGCCAACATGTGCTGGCGTTT
GCCCTCGCGGGCGGCGTGCTGCTGTTGATGGCTGTGGTGGTGGCGCTGTCGTTTGGTCGTGATGCGCACG
GCTGGACGTGGGCGAGCGGGGCGTTGCTCGAGGATTTAATGCCCTGGCGCTGGCCGCGAATTATGGCGGC
GCTGTTTGCGGGCGTCATGCTGGCGGTGGCGGGCTGTATTATTCAGCGACTGACCGGAAACCCGATGGCA
AGCCCGGAAGTGCTGGGGATTAGCTCCGGCGCGGCGTTTGGCGTGGTGTTGATGCTGTTTCTGGTGCCGG
GTAATGCCTTTGGCTGGCTGTTACCTGCAGGCAGTCTCGGCGCGGCGGTGACGCTGTTGATCATTATGAT
CGCCGCCGGCCGCGGTGGATTTTCCCCACACCGTATGTTACTGGCGGGGATGGCGTTAAGCACCGCGTTC
ACCATGCTTTTGATGATGTTGCAGGCAAGTGGTGACCCGCGAATGGCGCAAGTGCTGACCTGGATTTCCG
GTTCGACCTACAACGCGACCGATGCGCAGGTCTGGCGCACCGGAATTGTGATGGTGATTTTGCTGGCGAT
TACCCCGCTGTGCCGCCGCTGGCTGACCATTTTACCGCTGGGTGGTGATACCGCCCGAGCCGTAGGAATG
GCGCTGACGCCGACGCGAATTGCGCTGCTGCTGTTAGCGGCTTGCCTGACGGCGACCGCGACGATGACTA
TTGGACCGTTGAGTTTTGTTGGTTTAATGGCACCGCATATTGCGCGGATGATGGGCTTTCGACGGACGAT
GCCACACATCGTAATTTCGGCGCTGGTGGGTGGTTTACTGCTGGTGTTCGCTGACTGGTGTGGGCGGATG
GTGCTGTTTCCATTCCAGATCCCGGCGGGGCTGCTGTCAACCTTTATCGGCGCGCCATATTTTATCTATT
TGTTGAGAAAGCAGAGCCGTTAA
# Upstream_100_bases:
CCGGACGCTTTCAGCGCGTACCTGCAGTCTGGTTTTATGGTGCGACGCTCTCGGCAATGCACTTTGTGCG
CGTTCTGGATAACGCCATCGGAGGTAAAGC
# Blattner_No_Ontology:
Transport and binding proteins
# Gene_Position:
171462-173444 (Clockwise)
# Centisome_Position:
3.696
# Gene_Name:
fhuB
# GC_Content:
59.76%
# Metabolic_Importance:
Non_Essential
# Preceding_Gene:
fhuD
# Following_Gene:
hemL
# Operon_Status:
Yes
# Operon_Components:
fhuA_fhuC_fhuD_fhuB Ref: Center for Information Biology and DNA Data Bank of Japan, National Institute of Genetics http://www.cib.nig.ac.jp/dda/taitoh/ecoli.operon.html
# Paralogues:
None
# Copy Number:
Unknown
# RNA_Copy_No.:
Log phase (2max): 0.23
Stationary phase (2max): 0.2
Ref: Nature Biotech., 18, 1262-68, Dec. 2000 (PMID=11101804)
# Genbank_ID_(DNA):
G1786347
# Genbank_ID_(Protein):
AAC73264.1
# SWISS_PROT_(AC_&_ID):
$ FHUB_ECOLI (P06972)
# 2D_Gel_Image:
Not Available
# Other_Databases:
- ECOCYC: EG10303
- EcoGene: EG10303
- EMBL: X04319
- InterPro: IPR000522; IPR001991
- Pfam: PF01032
- PIR: A64739
- PRINTS: PR00173
# Pfam_Domain/Function:
PF01032 FecCD transport family
# Homologues:
Not Available
# Similarity:
Belongs to the binding-protein-dependent transport system permease family. FecCD subfamily.
# EC_Number:
Not Available
# No._of_Amino_Acids:
660 (Translated Protein)
638 (Mature Protein)
# Molecular_Weight:
70424 68117
# Theoretical_pI:
11.36
# Theoretical_pI (Mature):
11.18
# Sequence:
// MSKRIALFPALLLALLVIVATALTWMNFSQALPRSQWAQAAWSPDIDVIEQMIFHYSLLP
// RLAISLLVGAGLGLVGVLFQQVLRNPLAEPTTLGVATGAQLGITVTTLWAIPGAMASQFA
// AQAGACVVGLIVFGVAWGKRLSPVTLILAGLVVSLYCGAINQLLVIFHHDQLQSMFLWST
// GTLTQTDWGGVERLWPQLLGGVMLTLLLLRPLTLMGLDDGVARNLGLALSLARLAALSLA
// IVISALLVNAVGIIGFIGLFAPLLAKMLGARRLLPRLMLASLIGALILWLSDQIILWLTR
// VWMEVSTGSVTALIGAPLLLWLLPRLRSISAPDMKVNDRVAAERQHVLAFALAGGVLLLM
// AVVVALSFGRDAHGWTWASGALLEDLMPWRWPRIMAALFAGVMLAVAGCIIQRLTGNPMA
// SPEVLGISSGAAFGVVLMLFLVPGNAFGWLLPAGSLGAAVTLLIIMIAAGRGGFSPHRML
// LAGMALSTAFTMLLMMLQASGDPRMAQVLTWISGSTYNATDAQVWRTGIVMVILLAITPL
// CRRWLTILPLGGDTARAVGMALTPTRIALLLLAACLTATATMTIGPLSFVGLMAPHIARM
// MGFRRTMPHIVISALVGGLLLVFADWCGRMVLFPFQIPAGLLSTFIGAPYFIYLLRKQSR
// /\
// LTWMNFSQALPRSQWAQAAWSPDIDVIEQMIFHYSLLPRLAISLLVGAGLGLVGVLFQQV
// LRNPLAEPTTLGVATGAQLGITVTTLWAIPGAMASQFAAQAGACVVGLIVFGVAWGKRLS
// PVTLILAGLVVSLYCGAINQLLVIFHHDQLQSMFLWSTGTLTQTDWGGVERLWPQLLGGV
// MLTLLLLRPLTLMGLDDGVARNLGLALSLARLAALSLAIVISALLVNAVGIIGFIGLFAP
// LLAKMLGARRLLPRLMLASLIGALILWLSDQIILWLTRVWMEVSTGSVTALIGAPLLLWL
// LPRLRSISAPDMKVNDRVAAERQHVLAFALAGGVLLLMAVVVALSFGRDAHGWTWASGAL
// LEDLMPWRWPRIMAALFAGVMLAVAGCIIQRLTGNPMASPEVLGISSGAAFGVVLMLFLV
// PGNAFGWLLPAGSLGAAVTLLIIMIAAGRGGFSPHRMLLAGMALSTAFTMLLMMLQASGD
// PRMAQVLTWISGSTYNATDAQVWRTGIVMVILLAITPLCRRWLTILPLGGDTARAVGMAL
// TPTRIALLLLAACLTATATMTIGPLSFVGLMAPHIARMMGFRRTMPHIVISALVGGLLLV
// FADWCGRMVLFPFQIPAGLLSTFIGAPYFIYLLRKQSR
# PROSITE_Motif:
BPD_TRANSP_INN_MEMBR; PATTERN. PS00402; Binding-protein-dependent transport systems inner membrane comp. sign. [LIVMFY]-x(8)-[EQR]-[STAGV]-[STAG]-x(3)-G-[LIVMFYSTAC]-x(5)-[LIVMFYSTA]-PA x(4)-[LIVMFY]-[PKR]. PDOC00364; //
# Important_Sites:
Not Available
# Transmembrane:
Transmembrane 5 25 Potential
Transmembrane 63 83 Potential
Transmembrane 93 113 Potential
Transmembrane 118 138 Potential
Transmembrane 147 167 Potential
Transmembrane 240 260 Potential
Transmembrane 277 297 Potential
Transmembrane 303 323 Potential
Transmembrane 348 368 Potential
Transmembrane 391 411 Potential
Transmembrane 424 444 Potential
Transmembrane 447 467 Potential
Transmembrane 479 499 Potential
Transmembrane 528 548 Potential
Transmembrane 567 587 Potential
Transmembrane 607 627 Potential
Transmembrane 635 655 Potential
# Cys/Met_Content:
0.9 %Cys (Translated Protein)
4.8 %Met (Translated Protein)
5.8 %Cys+Met (Translated Protein)
0.9 %Cys (Mature Protein)
4.9 %Met (Mature Protein)
5.8 %Cys+Met (Mature Protein)
# Secondary_Structure:
>FHUB_ECOLI (Translated Protein)
MSKRIALFPALLLALLVIVATALTWMNFSQALPRSQWAQAAWSPDIDVIEQMIFHYSLLP
CCCCHHHHHHHHHHHHHHHHHHHHCCCHHHHCCHHHHHHHHCCCCCCHHHHHHHHHCCCC
PRLAISLLVGAGLGLVGVLFQQVLRNPLAEPTTLGVATGAQLGITVTTLWAIPGAMASQF
CCCHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCCHH
FAAQAGACVVGLIVFGVAWGKRLSPVTLILAGLVVSLYCGAINQLLVIFHHDQLQSMFLW
HHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHH
WSTGTLTQTDWGGVERLWPQLLGGVMLTLLLLRPLTLMGLDDGVARNLGLALSLARLAAL
HHCCCCCCCCHHHHHHCCCHHHHHHHHHHHHHHHHHHHHCCCHHHHHCCCCHHHHHHHHC
LSLAIVISALLVNAVGIIGFIGLFAPLLAKMLGARRLLPRLMLASLIGALILWLSDQIIL
CCCHHHHHHHHHHHHHHHHHHHHCCCHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHH
LWLTRVWMEVSTGSVTALIGAPLLLWLLPRLRSISAPDMKVNDRVAAERQHVLAFALAGG
HCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCEECCEECCCCCCCHHHHHHHH
GVLLLMAVVVALSFGRDAHGWTWASGALLEDLMPWRWPRIMAALFAGVMLAVAGCIIQRL
HHHHHHHHHHHHHCCCCCCCCCCCCCCCCHHHHCCCHHHHHHHHHHHHHHHHHHHHCCCC
LTGNPMASPEVLGISSGAAFGVVLMLFLVPGNAFGWLLPAGSLGAAVTLLIIMIAAGRGG
CCCCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHCCCCCCC
GFSPHRMLLAGMALSTAFTMLLMMLQASGDPRMAQVLTWISGSTYNATDAQVWRTGIVMV
CCCCCCHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHCCCCCCCHHHHCCCHHHHH
VILLAITPLCRRWLTILPLGGDTARAVGMALTPTRIALLLLAACLTATATMTIGPLSFVG
HHHHHHHHHHHHHHHHCCCCCHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCC
GLMAPHIARMMGFRRTMPHIVISALVGGLLLVFADWCGRMVLFPFQIPAGLLSTFIGAPY
CCCHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHH
YFIYLLRKQSR
HHHHHCCCCCC
/\
>FHUB_ECOLI (Mature Protein)
SKRIALFPALLLALLVIVATALTWMNFSQALPRSQWAQAAWSPDIDVIEQMIFHYSLLPR
CCCHHHHHHHHHHHHHHHHHHHHCCCHHHHCCHHHHHHHHCCCCCCHHHHHHHHHCCCCC
RLAISLLVGAGLGLVGVLFQQVLRNPLAEPTTLGVATGAQLGITVTTLWAIPGAMASQFA
CCHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCCHHH
AAQAGACVVGLIVFGVAWGKRLSPVTLILAGLVVSLYCGAINQLLVIFHHDQLQSMFLWS
HHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHH
STGTLTQTDWGGVERLWPQLLGGVMLTLLLLRPLTLMGLDDGVARNLGLALSLARLAALS
HCCCCCCCCHHHHHHCCCHHHHHHHHHHHHHHHHHHHHCCCHHHHHCCCCHHHHHHHHCC
SLAIVISALLVNAVGIIGFIGLFAPLLAKMLGARRLLPRLMLASLIGALILWLSDQIILW
CCHHHHHHHHHHHHHHHHHHHHCCCHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHC
WLTRVWMEVSTGSVTALIGAPLLLWLLPRLRSISAPDMKVNDRVAAERQHVLAFALAGGV
CCCCCCHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCEECCEECCCCCCCHHHHHHHHH
VLLLMAVVVALSFGRDAHGWTWASGALLEDLMPWRWPRIMAALFAGVMLAVAGCIIQRLT
HHHHHHHHHHHHCCCCCCCCCCCCCCCCHHHHCCCHHHHHHHHHHHHHHHHHHHHCCCCC
TGNPMASPEVLGISSGAAFGVVLMLFLVPGNAFGWLLPAGSLGAAVTLLIIMIAAGRGGF
CCCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHCCCCCCCC
FSPHRMLLAGMALSTAFTMLLMMLQASGDPRMAQVLTWISGSTYNATDAQVWRTGIVMVI
CCCCCHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHCCCCCCCHHHHCCCHHHHHH
ILLAITPLCRRWLTILPLGGDTARAVGMALTPTRIALLLLAACLTATATMTIGPLSFVGL
HHHHHHHHHHHHHHHCCCCCHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCCC
LMAPHIARMMGFRRTMPHIVISALVGGLLLVFADWCGRMVLFPFQIPAGLLSTFIGAPYF
CCHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHH
FIYLLRKQSR
HHHHCCCCCC
# PDB_Accession:
& Not Available
# Resolution:
Not Available
# Structure_CLASS:
Mainly Alpha
# Quaternary_Structure:
heteropentameric A2B2C complex of fhuB (2x) and fhuC (2x) and fhuD
# Interacting_Partners:
1) fhuB, 2) fhuC, 3) fhuD,
# Cofactors:
Not Available
# Metals_Ions:
Not Available
# Kcat_Value_[1/min]:
Not Available
# Specific_Activity_[micromol/min/mg]:
Not Available
# Km_Value_[mM]:
Not Available
# Substrates:
ATP + iron (III) hydroxamate [Periplasm] + H2O
# Products:
ADP + phosphate + iron (III) hydroxamate [Cytoplasm]
# Specific_Reaction:
ATP + iron (III) hydroxamate [Periplasm] + H2O = ADP + phosphate + iron (III) hydroxamate [Cytoplasm]
# General_Reaction:
Not Available
# Inhibitor:
Not Available
# Priority:
3.1
# Status:
Not Available
# Availability:
Not Available
#END_ECARDFILE
#BEGIN_ECARDFILE
# Entry_ID:
CC1030A.1
# Accession_No.:
UA0001030
# Name:
Probable intracellular septation protein
# Alternate_Names:
Not Available
# General_Function:
Not Available
# COG_Function:
Cell cycle control, cell division, chromosome partitioning (code D)
# COG_ID:
COG2917 Intracellular septation protein A (Evalue = 1e-100)
# Specific_Function:
Involved in cell division; probably involved in intracellular septation (By similarity).
# Riley_Gene_Function:
putative membrane protein, intracellular septation protein
# Riley_Cell_Function:
>>>
Cell processes
Cell division
||
>>>
Cell structure
Membrane
# Gene_Ontology:
>>>
Function: Not Available
||
>>>
Process: Not Available
||
>>>
Component: cell
Component: membrane
Component: intrinsic to membrane
Component: integral to membrane
# Location:
Integral Membrane Protein
# Blattner_Number:
b1254
# Gene_Sequence:
ATGAAGCAGTTTCTTGATTTTTTACCGCTGGTTGTCTTTTTCGCGTTTTACAAGATTTATGACATCTATG
CGGCTACTGCGGCGCTGATCGTCGCCACGGCGATTGTGCTTATCTATAGCTGGGTTCGCTTTCGTAAGGT
TGAGAAGATGGCCCTGATCACTTTTGTTCTGGTGGTCGTCTTCGGTGGCTTGACGCTGTTCTTCCACAAT
GATGAGTTTATTAAATGGAAGGTTACTGTCATTTATGCTCTATTTGCGGGAGCCCTGTTAGTCAGCCAAT
GGGTGATGAAAAAGCCGCTAATTCAGCGGATGCTGGGTAAAGAACTCACGCTGCCGCAACCGGTATGGTC
GAAGCTGAATCTGGCCTGGGCTGTTTTCTTTATCCTTTGCGGTCTGGCAAACATCTACATCGCATTCTGG
CTGCCGCAAAATATTTGGGTCAACTTTAAAGTCTTTGGCCTGACCGCCCTTACCTTAATCTTCACATTGT
TAAGCGGTATCTATATCTACCGCCACATGCCGCAGGAAGATAAATCCTAA
# Upstream_100_bases:
CCTTGAGCAACCTGATTTCAGCCATATTGCTCATCTATCTGTTCCGCCTGTATATGTTGATTCGCCAATA
ACCTTAAGCATTTGATTACGGAATCGTAAA
# Blattner_No_Ontology:
Hypothetical, unclassified, unknown
# Gene_Position:
1310375-1310914 (Counter Clockwise)
# Centisome_Position:
28.254
# Gene_Name:
ispZ
# GC_Content:
46.48%
# Metabolic_Importance:
Unknown
# Preceding_Gene:
yciA
# Following_Gene:
yciC
# Operon_Status:
No
# Operon_Components:
None
# Paralogues:
None
# Copy Number:
Unknown
# RNA_Copy_No.:
Log phase (2max): 0.34
Stationary phase (2max): 0.16
Ref: Nature Biotech., 18, 1262-68, Dec. 2000 (PMID=11101804)
# Genbank_ID_(DNA):
G1787507
# Genbank_ID_(Protein):
AAC74336.1
# SWISS_PROT_(AC_&_ID):
$ ISPZ_ECOLI (P0A710)
# 2D_Gel_Image:
Not Available
# Other_Databases:
- ECOCYC: EG11122
- EcoGene: EG11122
- EMBL: X13583
- InterPro: IPR006008
- Pfam: PF04279
- PIR: S07799
# Pfam_Domain/Function:
PF04279 Intracellular septation protein A;
# Homologues:
Not Available
# Similarity:
Belongs to the ispZ family.
# EC_Number:
Not Available
# No._of_Amino_Acids:
179 (Translated Protein)
179 (Mature Protein)
# Molecular_Weight:
20790 20790
# Theoretical_pI:
10.11
# Theoretical_pI (Mature):
10.11
# Sequence:
// MKQFLDFLPLVVFFAFYKIYDIYAATAALIVATAIVLIYSWVRFRKVEKMALITFVLVVV
// FGGLTLFFHNDEFIKWKVTVIYALFAGALLVSQWVMKKPLIQRMLGKELTLPQPVWSKLN
// LAWAVFFILCGLANIYIAFWLPQNIWVNFKVFGLTALTLIFTLLSGIYIYRHMPQEDKS
// /\
// MKQFLDFLPLVVFFAFYKIYDIYAATAALIVATAIVLIYSWVRFRKVEKMALITFVLVVV
// FGGLTLFFHNDEFIKWKVTVIYALFAGALLVSQWVMKKPLIQRMLGKELTLPQPVWSKLN
// LAWAVFFILCGLANIYIAFWLPQNIWVNFKVFGLTALTLIFTLLSGIYIYRHMPQEDKS
# PROSITE_Motif:
Not Available
# Important_Sites:
Not Available
# Transmembrane:
Transmembrane 23 43 Potential
Transmembrane 47 67 Potential
Transmembrane 84 105 Potential
Transmembrane 118 140 Potential
Transmembrane 145 164 Potential
# Cys/Met_Content:
0.6 %Cys (Translated Protein)
2.8 %Met (Translated Protein)
3.4 %Cys+Met (Translated Protein)
0.6 %Cys (Mature Protein)
2.8 %Met (Mature Protein)
3.4 %Cys+Met (Mature Protein)
# Secondary_Structure:
>ISPZ_ECOLI (Translated Protein)
MKQFLDFLPLVVFFAFYKIYDIYAATAALIVATAIVLIYSWVRFRKVEKMALITFVLVVV
CCCHHHHHCCEEEEEEEEECCCHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHH
VFGGLTLFFHNDEFIKWKVTVIYALFAGALLVSQWVMKKPLIQRMLGKELTLPQPVWSKL
HHHHHHHCCCCCEEEEECHHHCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCHH
LNLAWAVFFILCGLANIYIAFWLPQNIWVNFKVFGLTALTLIFTLLSGIYIYRHMPQEDK
HHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHCCCHHHHHHCCCCCC
KS
CC
/\
>ISPZ_ECOLI (Mature Protein)
KQFLDFLPLVVFFAFYKIYDIYAATAALIVATAIVLIYSWVRFRKVEKMALITFVLVVVF
CCHHHHHCCEEEEEEEEECCCHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHH
FGGLTLFFHNDEFIKWKVTVIYALFAGALLVSQWVMKKPLIQRMLGKELTLPQPVWSKLN
HHHHHHCCCCCEEEEECHHHCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCHHH
NLAWAVFFILCGLANIYIAFWLPQNIWVNFKVFGLTALTLIFTLLSGIYIYRHMPQEDKS
HHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHCCCHHHHHHCCCCCCC
S
C
# PDB_Accession:
& Not Available
# Resolution:
Not Available
# Structure_CLASS:
Mainly Alpha
# Quaternary_Structure:
Not Available
# Interacting_Partners:
Unknown
# Cofactors:
Not Available
# Metals_Ions:
Not Available
# Kcat_Value_[1/min]:
Not Available
# Specific_Activity_[micromol/min/mg]:
Not Available
# Km_Value_[mM]:
Not Available
# Substrates:
Not Available
# Products:
Not Available
# Specific_Reaction:
Not Available
# General_Reaction:
Not Available
# Inhibitor:
Not Available
# Priority:
5.2
# Status:
Not Available
# Availability:
Not Available
#END_ECARDFILE
#BEGIN_ECARDFILE
# Entry_ID:
CC1288A.1
# Accession_No.:
UA0001288
# Name:
UTP--glucose-1-phosphate uridylyltransferase
# Alternate_Names:
UDP-glucose pyrophosphorylase; UDPGP; Alpha-D-glucosyl-1-phosphate uridylyltransferase; Uridine diphosphoglucose pyrophosphorylase
# General_Function:
Purines, pyrimidines, nucleosides, and nucleotides; Nucleotide-diphospho-sugar transferases
# COG_Function:
Cell wall/membrane/envelope biogenesis (code M)
# COG_ID:
COG1210 UDP-glucose pyrophosphorylase (Evalue = 1e-172)
# Specific_Function:
May play a role in stationary phase survival.
# Riley_Gene_Function:
glucose-1-phosphate uridylyltransferase
# Riley_Cell_Function:
>>>
Metabolism
Macromolecules (cellular constituent) biosynthesis
Colanic acid (M antigen)
||
>>>
Metabolism
Central intermediary metabolism
Galactose metabolism
||
>>>
Metabolism
Central intermediary metabolism
Misc. glucose metabolism
||
>>>
Cell processes
Adaptation to stress
Dessication
||
>>>
Cell structure
Capsule (M and K antigens)
# Gene_Ontology:
>>>
Function: catalytic activity
Function: transferase activity
Function: transferase activity, transferring phosphorus-containing groups
Function: nucleotidyltransferase activity
Function: UDP-sugar pyrophosphorylase activity
Function: UTP:glucose-1-phosphate uridylyltransferase activity
||
>>>
Function: catalytic activity
Function: transferase activity
Function: transferase activity, transferring phosphorus-containing groups
Function: nucleotidyltransferase activity
||
>>>
Process: physiological process
Process: metabolism
Process: macromolecule metabolism
Process: carbohydrate metabolism
Process: cellular carbohydrate metabolism
Process: monosaccharide metabolism
Process: hexose metabolism
Process: glucose metabolism
Process: UDP-glucose metabolism
||
>>>
Process: cellular metabolism
Process: alcohol metabolism
Process: monosaccharide metabolism
Process: hexose metabolism
Process: glucose metabolism
Process: UDP-glucose metabolism
||
>>>
Process: nucleobase, nucleoside, nucleotide and nucleic acid metabolism
Process: nucleotide-sugar metabolism
Process: UDP-glucose metabolism
||
>>>
Process: primary metabolism
Process: carbohydrate metabolism
Process: cellular carbohydrate metabolism
Process: monosaccharide metabolism
Process: hexose metabolism
Process: glucose metabolism
Process: UDP-glucose metabolism
||
>>>
Process: nucleobase, nucleoside, nucleotide and nucleic acid metabolism
Process: nucleotide-sugar metabolism
Process: UDP-glucose metabolism
||
>>>
Process: cellular physiological process
Process: cellular metabolism
Process: alcohol metabolism
Process: monosaccharide metabolism
Process: hexose metabolism
Process: glucose metabolism
Process: UDP-glucose metabolism
||
>>>
Process: nucleobase, nucleoside, nucleotide and nucleic acid metabolism
Process: nucleotide-sugar metabolism
Process: UDP-glucose metabolism
||
>>>
Process: cellular process
Process: cellular physiological process
Process: cellular metabolism
Process: alcohol metabolism
Process: monosaccharide metabolism
Process: hexose metabolism
Process: glucose metabolism
Process: UDP-glucose metabolism
||
>>>
Process: nucleobase, nucleoside, nucleotide and nucleic acid metabolism
Process: nucleotide-sugar metabolism
Process: UDP-glucose metabolism
Process: physiological process
Process: metabolism
Process: biosynthesis
||
>>>
Component: Not Available
# Location:
Cytoplasm
# Blattner_Number:
b1236
# Gene_Sequence:
ATGGCTGCCATTAATACGAAAGTCAAAAAAGCCGTTATCCCCGTTGCGGGATTAGGAACCAGGATGTTGC
CGGCGACGAAAGCCATCCCGAAAGAGATGCTGCCACTTGTCGATAAGCCATTAATTCAATACGTCGTGAA
TGAATGTATTGCGGCTGGCATTACTGAAATTGTGCTGGTTACACACTCATCTAAAAACTCTATTGAAAAC
CACTTTGATACCAGTTTTGAACTGGAAGCAATGCTGGAAAAACGTGTAAAACGTCAACTGCTTGATGAAG
TGCAGTCTATTTGTCCACCGCACGTGACTATTATGCAAGTTCGTCAGGGTCTGGCGAAAGGCCTGGGACA
CGCGGTATTGTGTGCTCACCCGGTAGTGGGTGATGAACCGGTAGCTGTTATTTTGCCTGATGTTATTCTG
GATGAATATGAATCCGATTTGTCACAGGATAACCTGGCAGAGATGATCCGCCGCTTTGATGAAACGGGTC
ATAGCCAGATCATGGTTGAACCGGTTGCTGATGTGACCGCATATGGCGTTGTGGATTGCAAAGGCGTTGA
ATTAGCGCCGGGTGAAAGCGTACCGATGGTTGGTGTGGTAGAAAAACCGAAAGCGGATGTTGCGCCGTCT
AATCTCGCTATTGTGGGTCGTTACGTACTTAGCGCGGATATTTGGCCGTTGCTGGCAAAAACCCCTCCGG
GAGCTGGTGATGAAATTCAGCTCACCGACGCAATTGATATGCTGATCGAAAAAGAAACGGTGGAAGCCTA
TCATATGAAAGGGAAGAGCCATGACTGCGGTAATAAATTAGGTTACATGCAGGCCTTCGTTGAATACGGT
ATTCGTCATAACACCCTTGGCACGGAATTTAAAGCCTGGCTTGAAGAAGAGATGGGCATTAAGAAGTAA
# Upstream_100_bases:
CCTCCTTTTCAGAACTTAGCCCCTTCGGGGTGCTGATATACTGGGATGCGATACAGAAATATGAACACGT
TCAAAACACGAACAGTCCAGGAGAATTTAA
# Blattner_No_Ontology:
Carbon compound catabolism
# Gene_Position:
1290680-1291588 (Clockwise)
# Centisome_Position:
27.818
# Gene_Name:
galU
# GC_Content:
46.97%
# Metabolic_Importance:
Non_Essential
# Preceding_Gene:
hnr
# Following_Gene:
hns
# Operon_Status:
No
# Operon_Components:
None
# Paralogues:
b2042 (galF) 58; b2039 (rfbA) 24; b3789 (rffH) 22;
# Copy Number:
120 Molecules/Cell In: Growth Phase, Minimal Media (E. Coli Proteins From A SDS/Heat Extract).
140 Molecules/Cell In: Growth Phase, Minimal Media (E. Coli Proteins From A SDS/Heat Extract).
260 Molecules/Cell In: Growth Phase, Minimal Media (E. Coli Proteins From A SDS/Heat Extract).
# RNA_Copy_No.:
Log phase (2max): 0.08
Stationary phase (2max): 0.21
Ref: Nature Biotech., 18, 1262-68, Dec. 2000 (PMID=11101804)
# Genbank_ID_(DNA):
G1787488
# Genbank_ID_(Protein):
AAC74318.1
# SWISS_PROT_(AC_&_ID):
$ GALU_ECOLI (P0AEP3)
# 2D_Gel_Image:
Not Available
# Other_Databases:
- ECOCYC: EG11319
- EcoGene: EG11319
- EMBL: X59940
- InterPro: IPR005771; IPR005835
- Pfam: PF00483
- PIR: G64870
# Pfam_Domain/Function:
PF00483 Nucleotidyl transferase
# Homologues:
Not Available
# Similarity:
Belongs to the prokaryotic UDPGP family.
# EC_Number:
2.7.7.9
# No._of_Amino_Acids:
302 (Translated Protein)
301 (Mature Protein)
# Molecular_Weight:
32943 32811
# Theoretical_pI:
4.89
# Theoretical_pI (Mature):
4.89
# Sequence:
// MAAINTKVKKAVIPVAGLGTRMLPATKAIPKEMLPLVDKPLIQYVVNECIAAGITEIVLV
// THSSKNSIENHFDTSFELEAMLEKRVKRQLLDEVQSICPPHVTIMQVRQGLAKGLGHAVL
// CAHPVVGDEPVAVILPDVILDEYESDLSQDNLAEMIRRFDETGHSQIMVEPVADVTAYGV
// VDCKGVELAPGESVPMVGVVEKPKADVAPSNLAIVGRYVLSADIWPLLAKTPPGAGDEIQ
// LTDAIDMLIEKETVEAYHMKGKSHDCGNKLGYMQAFVEYGIRHNTLGTEFKAWLEEEMGI
// KK
// /\
// AAINTKVKKAVIPVAGLGTRMLPATKAIPKEMLPLVDKPLIQYVVNECIAAGITEIVLVT
// HSSKNSIENHFDTSFELEAMLEKRVKRQLLDEVQSICPPHVTIMQVRQGLAKGLGHAVLC
// AHPVVGDEPVAVILPDVILDEYESDLSQDNLAEMIRRFDETGHSQIMVEPVADVTAYGVV
// DCKGVELAPGESVPMVGVVEKPKADVAPSNLAIVGRYVLSADIWPLLAKTPPGAGDEIQL
// TDAIDMLIEKETVEAYHMKGKSHDCGNKLGYMQAFVEYGIRHNTLGTEFKAWLEEEMGIK
// K
# PROSITE_Motif:
Not Available
# Important_Sites:
Not Available
# Transmembrane:
Not Available
# Cys/Met_Content:
1.7 %Cys (Translated Protein)
4.0 %Met (Translated Protein)
5.6 %Cys+Met (Translated Protein)
1.7 %Cys (Mature Protein)
3.7 %Met (Mature Protein)
5.3 %Cys+Met (Mature Protein)
# Secondary_Structure:
>GALU_ECOLI (Translated Protein)
AAINTKVKKAVIPVAGLGTRMLPATKAIPKEMLPLVDKPLIQYVVNECIAAGITEIVLVT
CCCCCCCCEEEEECCCCCCCCHHHHHCCCCCCCCCCCCCHHHHHHHHHHHCCCCCEEEEE
HSSKNSIENHFDTSFELEAMLEKRVKRQLLDEVQSICPPHVTIMQVRQGLAKGLGHAVLC
CCCHHHHHHHHHHHHHHHHHHCCCCHHHHCCCHHCCCCCCCEEEEEECCCCCHHHHHHHH
AHPVVGDEPVAVILPDVILDEYESDLSQDNLAEMIRRFDETGHSQIMVEPVADVTAYGVV
HHHHCCCCCEEEEECCCCCCCCCHHHHHHHHHHHHHHHHHCCCEEEEEEECCCCCCCCCE
DCKGVELAPGESVPMVGVVEKPKADVAPSNLAIVGRYVLSADIWPLLAKTPPGAGDEIQL
EECCCCCCCCCEEEEEEEEECCCCCCCCCCEEEEEEEEECHHHHHHHHHCCCCCCCCCCH
TDAIDMLIEKETVEAYHMKGKSHDCGNKLGYMQAFVEYGIRHNTLGTEFKAWLEEEMGIK
HHHHHHHHHCCCEEEEEECCEEEECCCHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHCCC
K
C
/\
>GALU_ECOLI (Mature Protein)
AINTKVKKAVIPVAGLGTRMLPATKAIPKEMLPLVDKPLIQYVVNECIAAGITEIVLVTH
CCCCCCCEEEEECCCCCCCCHHHHHCCCCCCCCCCCCCHHHHHHHHHHHCCCCCEEEEEC
SSKNSIENHFDTSFELEAMLEKRVKRQLLDEVQSICPPHVTIMQVRQGLAKGLGHAVLCA
CCHHHHHHHHHHHHHHHHHHCCCCHHHHCCCHHCCCCCCCEEEEEECCCCCHHHHHHHHH
HPVVGDEPVAVILPDVILDEYESDLSQDNLAEMIRRFDETGHSQIMVEPVADVTAYGVVD
HHHCCCCCEEEEECCCCCCCCCHHHHHHHHHHHHHHHHHCCCEEEEEEECCCCCCCCCEE
CKGVELAPGESVPMVGVVEKPKADVAPSNLAIVGRYVLSADIWPLLAKTPPGAGDEIQLT
ECCCCCCCCCEEEEEEEEECCCCCCCCCCEEEEEEEEECHHHHHHHHHCCCCCCCCCCHH
DAIDMLIEKETVEAYHMKGKSHDCGNKLGYMQAFVEYGIRHNTLGTEFKAWLEEEMGIKK
HHHHHHHHCCCEEEEEECCEEEECCCHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHCCCC
# PDB_Accession:
& Not Available
# Resolution:
Not Available
# Structure_CLASS:
Alpha Beta
# Quaternary_Structure:
homotetrameric A4 complex of galU
# Interacting_Partners:
1) galU,
# Cofactors:
--Mg2+
# Metals_Ions:
--Co2+ --Mg2+ --Mn2+ --Ni2+
# Kcat_Value_[1/min]:
Not Available
# Specific_Activity_[micromol/min/mg]:
Not Available
# Km_Value_[mM]:
2 {TTP}
0.058-0.07 {UTP}
0.01 {glucose
# Substrates:
D-Glucose 1-phosphate + H+ + UTP
# Products:
Diphosphate + UDPglucose
# Specific_Reaction:
D-Glucose 1-phosphate + H+ + UTP --> Diphosphate + UDPglucose
# General_Reaction:
Nucleotidyl group transfer;
# Inhibitor:
--more --TDP-glucose --TDP-rhamnose
# Priority:
6.2
# Status:
Selected, Cloned
# Availability:
Montreal-Kingston Bacterial Structural Genomics Initiative
#END_ECARDFILE
#BEGIN_ECARDFILE
# Entry_ID:
CC1176A.2
# Accession_No.:
UA0001176
# Name:
Putative aldehyde dehydrogenase.
# Alternate_Names:
Not Available
# General_Function:
Energy metabolism
# COG_Function:
Energy production and conversion (code C)
# COG_ID:
COG1012 NAD-dependent aldehyde dehydrogenases (Evalue = 0.0)
# Specific_Function:
Weak But Measurable Aldh Enzyme Activity That Prefers Nadp Over NAD As Coenzyme.
# Riley_Gene_Function:
aldehyde dehydrogenase, prefers NADP over NAD
# Riley_Cell_Function:
>>>
Metabolism
Carbon compound utilization
Carbohydrates/Carbon compounds
||
>>>
Location of gene products
Cytoplasm
# Gene_Ontology:
>>>
Function: catalytic activity
Function: oxidoreductase activity
||
>>>
Process: physiological process
Process: metabolism
||
>>>
Component: Not Available
# Location:
Cytoplasm
# Blattner_Number:
b1300
# Gene_Sequence:
ATGAATTTTCATCATCTGGCTTACTGGCAGGATAAAGCGTTAAGTCTCGCCATTGAAAACCGCTTATTTA
TTAACGGTGAATATACTGCTGCGGCGGAAAATGAAACCTTTGAAACCGTTGATCCGGTCACCCAGGCACC
GCTGGCGAAAATTGCCCGCGGCAAGAGCGTCGATATCGACCGTGCGATGAGCGCAGCACGCGGCGTATTT
GAACGCGGCGACTGGTCACTCTCTTCTCCGGCTAAACGTAAAGCGGTACTGAATAAACTCGCCGATTTAA
TGGAAGCCCACGCCGAAGAGCTGGCACTGCTGGAAACTCTCGACACCGGCAAACCGATTCGTCACAGTCT
GCGTGATGATATTCCCGGCGCGGCGCGCGCCATTCGCTGGTACGCCGAAGCGATCGACAAAGTGTATGGC
GAAGTGGCGACCACCAGTAGCCATGAGCTGGCGATGATCGTGCGTGAACCGGTCGGCGTGATTGCCGCCA
TCGTGCCGTGGAACTTCCCGCTGTTGCTGACTTGCTGGAAACTCGGCCCGGCGCTGGCGGCGGGAAACAG
CGTGATTCTAAAACCGTCTGAAAAATCACCGCTCAGTGCGATTCGTCTCGCGGGGCTGGCGAAAGAAGCA
GGCTTGCCGGATGGTGTGTTGAACGTGGTGACGGGTTTTGGTCATGAAGCCGGGCAGGCGCTGTCGCGTC
ATAACGATATCGACGCCATTGCCTTTACCGGTTCAACCCGTACCGGGAAACAGCTGCTGAAAGATGCGGG
CGACAGCAACATGAAACGCGTCTGGCTGGAAGCGGGCGGCAAAAGCGCCAACATCGTTTTCGCTGACTGC
CCGGATTTGCAACAGGCGGCAAGCGCCACCGCAGCAGGCATTTTCTACAACCAGGGACAGGTGTGCATCG
CCGGAACGCGCCTGTTGCTGGAAGAGAGCATCGCCGATGAATTCTTAGCCCTGTTAAAACAGCAGGCGCA
AAACTGGCAGCCGGGCCATCCACTTGATCCCGCAACCACCATGGGCACCTTAATCGACTGCGCCCACGCC
GACTCGGTCCATAGCTTTATTCGGGAAGGCGAAAGCAAAGGGCAACTGTTGTTGGATGGCCGTAACGCCG
GGCTGGCTGCCGCCATCGGCCCGACCATCTTTGTGGATGTGGACCCGAATGCGTCCTTAAGTCGCGAAGA
GATTTTCGGTCCGGTGCTGGTGGTCACGCGTTTCACATCAGAAGAACAGGCGCTACAGCTTGCCAACGAC
AGCCAGTACGGCCTTGGCGCGGCGGTATGGACGCGCGACCTCTCCCGCGCGCACCGCATGAGCCGACGCC
TGAAAGCCGGTTCCGTCTTCGTCAATAACTACAACGACGGCGATATGACCGTGCCGTTTGGCGGCTATAA
GCAGAGCGGCAACGGTCGCGACAAATCCCTGCATGCCCTTGAAAAATTCACTGAACTGAAAACCATCTGG
ATAAGCCTGGAGGCCTGA
# Upstream_100_bases:
AAGAATGTCGCCAGAAATAAACGGGCATACGGCCCGGGGATCTCTGCGCCCTGACGTTCACAAACTGCAT
ATATCTGATAGACGTGAAACAGGAGTCATA
# Blattner_No_Ontology:
Energy metabolism
# Gene_Position:
1360767-1362254 (Clockwise)
# Centisome_Position:
29.329
# Gene_Name:
aldH
# GC_Content:
57.33%
# Metabolic_Importance:
Unknown
# Preceding_Gene:
ycjC
# Following_Gene:
ordL
# Operon_Status:
Yes
# Operon_Components:
aldH_ordL Ref: RegulonDB http://kinich.cifn.unam.mx:8850/db/regulondb_cgi.query_simple?v_organism=ECK12&v_table=3&v_name=aldH
# Paralogues:
b1385 (feaB) 40; b0312 (betB) 37; b3588 (aldB) 40; b1444 (ydcW) 36; b2661 (gabD) 36; b1525 (yneI) 33; b1415 (aldA) 30; b1746 (astD) 32; b2455 (eutE) 25;
# Copy Number:
Unknown
# RNA_Copy_No.:
Log phase (2max): 0.09
Stationary phase (2max): 0.08
Ref: Nature Biotech., 18, 1262-68, Dec. 2000 (PMID=11101804)
# Genbank_ID_(DNA):
G1787558
# Genbank_ID_(Protein):
AAC74382.1
# SWISS_PROT_(AC_&_ID):
$ ALDH_ECOLI (P23883)
# 2D_Gel_Image:
Not Available
# Other_Databases:
- ECOCYC: EG10036
- EcoGene: EG10036
- EMBL: M38433
- InterPro: IPR002086
- Pfam: PF00171
- PIR: G64878
- PROSITE: PS00070; PS00687
# Pfam_Domain/Function:
PF00171 Aldehyde dehydrogenase family
# Homologues:
Organism=Homo sapiens, GI25777730, Length=517, Positives=59%, Blast Score=365
Organism=Homo sapiens, GI25777732, Length=517, Positives=59%, Blast Score=362
Organism=Homo sapiens, GI4502041, Length=512, Positives=57%, Blast Score=353
Organism=Homo sapiens, GI25777724, Length=518, Positives=57%, Blast Score=349
Organism=Homo sapiens, GI21361176, Length=501, Positives=57%, Blast Score=347
Organism=Homo sapiens, GI21614513, Length=902, Positives=58%, Blast Score=327
Organism=Homo sapiens, GI51471003, Length=910, Positives=57%, Blast Score=320
Organism=Homo sapiens, GI25777728, Length=422, Positives=60%, Blast Score=320
Organism=Homo sapiens, GI25777726, Length=480, Positives=52%, Blast Score=287
Organism=Homo sapiens, GI12007648, Length=487, Positives=53%, Blast Score=282
Organism=Homo sapiens, GI25777739, Length=494, Positives=53%, Blast Score=265
Organism=Homo sapiens, GI4507229, Length=535, Positives=53%, Blast Score=246
Organism=Homo sapiens, GI25777721, Length=548, Positives=52%, Blast Score=236
Organism=Homo sapiens, GI25952152, Length=433, Positives=49%, Blast Score=224
Organism=Homo sapiens, GI11095441, Length=535, Positives=48%, Blast Score=184
Organism=Homo sapiens, GI23503239, Length=802, Positives=46%, Blast Score=154
Organism=Homo sapiens, GI22907049, Length=453, Positives=47%, Blast Score=143
Organism=Homo sapiens, GI4557343, Length=511, Positives=42%, Blast Score=139
Organism=Homo sapiens, GI4557303, Length=485, Positives=48%, Blast Score=136
Organism=Homo sapiens, GI4502045, Length=385, Positives=47%, Blast Score=134
Organism=Homo sapiens, GI4502043, Length=468, Positives=46%, Blast Score=129
Organism=Homo sapiens, GI25777736, Length=563, Positives=46%, Blast Score=114
Organism=Homo sapiens, GI25777734, Length=563, Positives=46%, Blast Score=114
Organism=Caenorhabditis elegans, GI25144435, Length=510, Positives=60%, Blast Score=380
Organism=Caenorhabditis elegans, GI17562198, Length=537, Positives=60%, Blast Score=374
Organism=Caenorhabditis elegans, GI32564736, Length=422, Positives=61%, Blast Score=340
Organism=Caenorhabditis elegans, GI25143876, Length=503, Positives=53%, Blast Score=290
Organism=Caenorhabditis elegans, GI25143874, Length=687, Positives=53%, Blast Score=290
Organism=Caenorhabditis elegans, GI17540198, Length=887, Positives=52%, Blast Score=284
Organism=Caenorhabditis elegans, GI17556392, Length=574, Positives=52%, Blast Score=271
Organism=Caenorhabditis elegans, GI17551164, Length=506, Positives=53%, Blast Score=253
Organism=Caenorhabditis elegans, GI17534119, Length=569, Positives=52%, Blast Score=251
Organism=Caenorhabditis elegans, GI17533151, Length=523, Positives=47%, Blast Score=187
Organism=Caenorhabditis elegans, GI17552910, Length=514, Positives=44%, Blast Score=135
Organism=Caenorhabditis elegans, GI17564084, Length=437, Positives=49%, Blast Score=133
Organism=Caenorhabditis elegans, GI32566756, Length=494, Positives=48%, Blast Score=132
Organism=Caenorhabditis elegans, GI25146394, Length=493, Positives=48%, Blast Score=132
Organism=Caenorhabditis elegans, GI25146391, Length=493, Positives=48%, Blast Score=132
Organism=Caenorhabditis elegans, GI17534447, Length=563, Positives=43%, Blast Score=112
Organism=Caenorhabditis elegans, GI32564151, Length=512, Positives=42%, Blast Score=102
Organism=Saccharomyces cerevisiae, GI6320917, Length=520, Positives=60%, Blast Score=355
Organism=Saccharomyces cerevisiae, GI6323822, Length=506, Positives=59%, Blast Score=352
Organism=Saccharomyces cerevisiae, GI6323821, Length=506, Positives=58%, Blast Score=347
Organism=Saccharomyces cerevisiae, GI6324950, Length=519, Positives=58%, Blast Score=339
Organism=Saccharomyces cerevisiae, GI6325196, Length=500, Positives=56%, Blast Score=322
Organism=Saccharomyces cerevisiae, GI6319478, Length=497, Positives=52%, Blast Score=247
Organism=Saccharomyces cerevisiae, GI6321828, Length=644, Positives=43%, Blast Score=131
Organism=Saccharomyces cerevisiae, GI6321826, Length=575, Positives=41%, Blast Score=121
Organism=Saccharomyces cerevisiae, GI6323757, Length=532, Positives=47%, Blast Score=119
Organism=Mus musculus, GI21312260, Length=519, Positives=58%, Blast Score=363
Organism=Mus musculus, GI6753036, Length=519, Positives=58%, Blast Score=359
Organism=Mus musculus, GI7304881, Length=501, Positives=59%, Blast Score=357
Organism=Mus musculus, GI7106242, Length=501, Positives=59%, Blast Score=355
Organism=Mus musculus, GI6677665, Length=499, Positives=58%, Blast Score=351
Organism=Mus musculus, GI31542123, Length=512, Positives=57%, Blast Score=351
Organism=Mus musculus, GI23956316, Length=923, Positives=59%, Blast Score=337
Organism=Mus musculus, GI27532959, Length=902, Positives=57%, Blast Score=324
Organism=Mus musculus, GI30520135, Length=487, Positives=53%, Blast Score=289
Organism=Mus musculus, GI9910128, Length=494, Positives=53%, Blast Score=271
Organism=Mus musculus, GI27369748, Length=523, Positives=52%, Blast Score=239
Organism=Mus musculus, GI19527258, Length=535, Positives=48%, Blast Score=182
Organism=Mus musculus, GI26080429, Length=802, Positives=45%, Blast Score=148
Organism=Mus musculus, GI6680678, Length=484, Positives=50%, Blast Score=143
Organism=Mus musculus, GI6680676, Length=453, Positives=48%, Blast Score=141
Organism=Mus musculus, GI20070418, Length=511, Positives=41%, Blast Score=132
Organism=Mus musculus, GI34328288, Length=468, Positives=47%, Blast Score=130
Organism=Mus musculus, GI38084778, Length=479, Positives=47%, Blast Score=127
Organism=Mus musculus, GI34328415, Length=562, Positives=44%, Blast Score=122
Organism=Drosophila melanogaster, GI20129399, Length=520, Positives=59%, Blast Score=352
Organism=Drosophila melanogaster, GI24650465, Length=485, Positives=57%, Blast Score=338
Organism=Drosophila melanogaster, GI24585660, Length=913, Positives=56%, Blast Score=316
Organism=Drosophila melanogaster, GI21356737, Length=509, Positives=54%, Blast Score=276
Organism=Drosophila melanogaster, GI62472936, Length=509, Positives=54%, Blast Score=276
Organism=Drosophila melanogaster, GI62472926, Length=509, Positives=54%, Blast Score=276
Organism=Drosophila melanogaster, GI62472918, Length=509, Positives=54%, Blast Score=276
Organism=Drosophila melanogaster, GI24638878, Length=511, Positives=47%, Blast Score=178
Organism=Drosophila melanogaster, GI24638876, Length=520, Positives=47%, Blast Score=178
Organism=Drosophila melanogaster, GI24666674, Length=540, Positives=45%, Blast Score=132
Organism=Drosophila melanogaster, GI45552499, Length=497, Positives=44%, Blast Score=121
Organism=Drosophila melanogaster, GI24586250, Length=498, Positives=45%, Blast Score=120
Organism=Drosophila melanogaster, GI24668425, Length=574, Positives=48%, Blast Score=116
Organism=Drosophila melanogaster, GI24668417, Length=574, Positives=48%, Blast Score=116
Organism=Drosophila melanogaster, GI24668413, Length=574, Positives=48%, Blast Score=116
Organism=Drosophila melanogaster, GI24586252, Length=561, Positives=45%, Blast Score=107
Organism=Drosophila melanogaster, GI24586258, Length=561, Positives=45%, Blast Score=107
Organism=Drosophila melanogaster, GI24586256, Length=561, Positives=45%, Blast Score=107
Organism=Drosophila melanogaster, GI24586254, Length=561, Positives=45%, Blast Score=107
Organism=Drosophila melanogaster, GI45551031, Length=626, Positives=45%, Blast Score=107
Organism=Drosophila melanogaster, GI45551030, Length=626, Positives=45%, Blast Score=107
Organism=Drosophila melanogaster, GI28574525, Length=581, Positives=42%, Blast Score=85.5
Organism=Drosophila melanogaster, GI28571806, Length=608, Positives=45%, Blast Score=81.6
Organism=Drosophila melanogaster, GI28571800, Length=609, Positives=45%, Blast Score=81.6
Organism=Drosophila melanogaster, GI28571802, Length=609, Positives=45%, Blast Score=81.6
Organism=Drosophila melanogaster, GI28571798, Length=614, Positives=45%, Blast Score=81.6
Organism=Drosophila melanogaster, GI28571794, Length=614, Positives=45%, Blast Score=81.6
Organism=Drosophila melanogaster, GI28571796, Length=614, Positives=45%, Blast Score=81.6
Organism=Drosophila melanogaster, GI28571804, Length=614, Positives=45%, Blast Score=81.6
Organism=Drosophila melanogaster, GI45550376, Length=504, Positives=49%, Blast Score=72.4
# Similarity:
Belongs to the aldehyde dehydrogenase family.
# EC_Number:
* 1.2.1.3
# No._of_Amino_Acids:
495 (Translated Protein)
495 (Mature Protein)
# Molecular_Weight:
53419 53419
# Theoretical_pI:
5.95
# Theoretical_pI (Mature):
5.95
# Sequence:
// MNFHHLAYWQDKALSLAIENRLFINGEYTAAAENETFETVDPVTQAPLAKIARGKSVDID
// RAMSAARGVFERGDWSLSSPAKRKAVLNKLADLMEAHAEELALLETLDTGKPIRHSLRDD
// IPGAARAIRWYAEAIDKVYGEVATTSSHELAMIVREPVGVIAAIVPWNFPLLLTCWKLGP
// ALAAGNSVILKPSEKSPLSAIRLAGLAKEAGLPDGVLNVVTGFGHEAGQALSRHNDIDAI
// AFTGSTRTGKQLLKDAGDSNMKRVWLEAGGKSANIVFADCPDLQQAASATAAGIFYNQGQ
// VCIAGTRLLLEESIADEFLALLKQQAQNWQPGHPLDPATTMGTLIDCAHADSVHSFIREG
// ESKGQLLLDGRNAGLAAAIGPTIFVDVDPNASLSREEIFGPVLVVTRFTSEEQALQLAND
// SQYGLGAAVWTRDLSRAHRMSRRLKAGSVFVNNYNDGDMTVPFGGYKQSGNGRDKSLHAL
// EKFTELKTIWISLEA
// /\
// MNFHHLAYWQDKALSLAIENRLFINGEYTAAAENETFETVDPVTQAPLAKIARGKSVDID
// RAMSAARGVFERGDWSLSSPAKRKAVLNKLADLMEAHAEELALLETLDTGKPIRHSLRDD
// IPGAARAIRWYAEAIDKVYGEVATTSSHELAMIVREPVGVIAAIVPWNFPLLLTCWKLGP
// ALAAGNSVILKPSEKSPLSAIRLAGLAKEAGLPDGVLNVVTGFGHEAGQALSRHNDIDAI
// AFTGSTRTGKQLLKDAGDSNMKRVWLEAGGKSANIVFADCPDLQQAASATAAGIFYNQGQ
// VCIAGTRLLLEESIADEFLALLKQQAQNWQPGHPLDPATTMGTLIDCAHADSVHSFIREG
// ESKGQLLLDGRNAGLAAAIGPTIFVDVDPNASLSREEIFGPVLVVTRFTSEEQALQLAND
// SQYGLGAAVWTRDLSRAHRMSRRLKAGSVFVNNYNDGDMTVPFGGYKQSGNGRDKSLHAL
// EKFTELKTIWISLEA
# PROSITE_Motif:
ALDEHYDE_DEHYDR_CYS; PATTERN. PS00070; Aldehyde dehydrogenases cysteine active site. [FYLVA]-x(3)-G-[QE]-x-C-[LIVMGSTANC]-[AGCN]-x-[GSTADNEKR]. PDOC00068; //
ALDEHYDE_DEHYDR_GLU; PATTERN. PS00687; Aldehyde dehydrogenases glutamic acid active site. [LIVMFGA]-E-[LIMSTAC]-[GS]-G-[KNLM]-[SADN]-[TAPFV]. PDOC00068; //
# Important_Sites:
Active_Site 267 267 By Similarity
Active_Site 302 302 By Similarity
# Transmembrane:
Not Available
# Cys/Met_Content:
0.8 %Cys (Translated Protein)
1.6 %Met (Translated Protein)
2.4 %Cys+Met (Translated Protein)
0.8 %Cys (Mature Protein)
1.6 %Met (Mature Protein)
2.4 %Cys+Met (Mature Protein)
# Secondary_Structure:
>DHAL_ECOLI (Translated Protein)
MNFHHLAYWQDKALSLAIENRLFINGEYTAAAENETFETVDPVTQAPLAKIARGKSVDID
CCCCCHHHHHHHHHHCCCCCCEEECCEEECCCCCCEEEEECCCCCCEEEEEECCCHHHHH
RAMSAARGVFERGDWSLSSPAKRKAVLNKLADLMEAHAEELALLETLDTGKPIRHSLRDD
HHHHHHHHHCCCCCHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHH
IPGAARAIRWYAEAIDKVYGEVATTSSHELAMIVREPVGVIAAIVPWNFPLLLTCWKLGP
HHHHHHHHHHHHHHHHHHCCCCCCCCCCCEEEEEEECCCEEEEECCCCCHHHHHHHHHHH
ALAAGNSVILKPSEKSPLSAIRLAGLAKEAGLPDGVLNVVTGFGHEAGQALSRHNDIDAI
HHHCCCEEEEECCCHHHHHHHHHHHHHHHHCCCCCCEEECCCCHHHHHHHHHHCCCCCEE
AFTGSTRTGKQLLKDAGDSNMKRVWLEAGGKSANIVFADCPDLQQAASATAAGIFYNQGQ
EEECCHHHHHHHHHHHHHCCCCCEEEECCCCCEEEECCCHHHHHHHHHHHHHHHHCCCCC
VCIAGTRLLLEESIADEFLALLKQQAQNWQPGHPLDPATTMGTLIDCAHADSVHSFIREG
CCCCCCEEEEEHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHH
ESKGQLLLDGRNAGLAAAIGPTIFVDVDPNASLSREEIFGPVLVVTRFTSEEQALQLAND
HHCCCEEECCCCCCCCCEECCEEEECCCCCCHHHHCCCCCCEEEEEEECCHHHHHHHHHC
SQYGLGAAVWTRDLSRAHRMSRRLKAGSVFVNNYNDGDMTVPFGGYKQSGNGRDKSLHAL
CCCCCEEEEECCCHHHHHHHHHHCCCCEEECCCCCCCCCCCCCCCCHHHHCCCCCCHHHH
EKFTELKTIWISLEA
HHHHEEEEEEEECCC
/\
>DHAL_ECOLI (Mature Protein)
NFHHLAYWQDKALSLAIENRLFINGEYTAAAENETFETVDPVTQAPLAKIARGKSVDIDR
CCCCHHHHHHHHHHCCCCCCEEECCEEECCCCCCEEEEECCCCCCEEEEEECCCHHHHHH
AMSAARGVFERGDWSLSSPAKRKAVLNKLADLMEAHAEELALLETLDTGKPIRHSLRDDI
HHHHHHHHCCCCCHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHH
PGAARAIRWYAEAIDKVYGEVATTSSHELAMIVREPVGVIAAIVPWNFPLLLTCWKLGPA
HHHHHHHHHHHHHHHHHCCCCCCCCCCCEEEEEEECCCEEEEECCCCCHHHHHHHHHHHH
LAAGNSVILKPSEKSPLSAIRLAGLAKEAGLPDGVLNVVTGFGHEAGQALSRHNDIDAIA
HHCCCEEEEECCCHHHHHHHHHHHHHHHHCCCCCCEEECCCCHHHHHHHHHHCCCCCEEE
FTGSTRTGKQLLKDAGDSNMKRVWLEAGGKSANIVFADCPDLQQAASATAAGIFYNQGQV
EECCHHHHHHHHHHHHHCCCCCEEEECCCCCEEEECCCHHHHHHHHHHHHHHHHCCCCCC
CIAGTRLLLEESIADEFLALLKQQAQNWQPGHPLDPATTMGTLIDCAHADSVHSFIREGE
CCCCCEEEEEHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHH
SKGQLLLDGRNAGLAAAIGPTIFVDVDPNASLSREEIFGPVLVVTRFTSEEQALQLANDS
HCCCEEECCCCCCCCCEECCEEEECCCCCCHHHHCCCCCCEEEEEEECCHHHHHHHHHCC
QYGLGAAVWTRDLSRAHRMSRRLKAGSVFVNNYNDGDMTVPFGGYKQSGNGRDKSLHALE
CCCCEEEEECCCHHHHHHHHHHCCCCEEECCCCCCCCCCCCCCCCHHHHCCCCCCHHHHH
KFTELKTIWISLEA
HHHEEEEEEEECCC
# PDB_Accession:
& Model Based on 1CW3 (15-494)
# Resolution:
Not Available
# Structure_CLASS:
Alpha Beta
# Quaternary_Structure:
Not Available
# Interacting_Partners:
1) eutG (hypothetical), 2) fmt (hypothetical), 3) fucO (hypothetical),
# Cofactors:
Not Available
# Metals_Ions:
Not Available
# Kcat_Value_[1/min]:
Not Available
# Specific_Activity_[micromol/min/mg]:
Not Available
# Km_Value_[mM]:
0.165 {acetaldehyde}
0.064 {propionaldehyde}
0.045-0.046 {butyraldehyde}
0.044 {NAD+}
0.009-0.0095 {hexylaldehyde}
0.007-0.1 {NAD+}
0.0013 {decanal}
# Substrates:
Acetaldehyde + H2O + Nicotinamide adenine dinucleotide
# Products:
Acetate + H+ + Nicotinamide adenine dinucleotide - reduced
# Specific_Reaction:
Acetaldehyde + H2O + Nicotinamide adenine dinucleotide --> Acetate + (2) H+ + Nicotinamide adenine dinucleotide - reduced
# General_Reaction:
Redox reaction;
# Inhibitor:
·Iodosobenzoate ·p-Hydroxy mercuribenzoate
# Priority:
1.0
# Status:
Not Available
# Availability:
Not Available
#END_ECARDFILE
#BEGIN_ECARDFILE
# Entry_ID:
CC0245A.1
# Accession_No.:
UA0000245
# Name:
N utilization substance protein B
# Alternate_Names:
Protein nusB
# General_Function:
Transcription; Antitermination factor NusB
# COG_Function:
Transcription (code K)
# COG_ID:
COG0781 Transcription termination factor (Evalue = 2e-73)
# Specific_Function:
One of the proteins essential for the formation of the RNA polymerase antitermination complex in the presence of lambda phage N protein. However, it is involved in the transcription termination process at certain sites during normal bacterial growth. Binds to the boxA RNA motif.
# Riley_Gene_Function:
transcription termination; L factor; transcription antitermination protein
# Riley_Cell_Function:
>>>
Information transfer
RNA related
Transcription related
||
>>>
Location of gene products
Cytoplasm
# Gene_Ontology:
>>>
Function: transcription regulator activity
Function: transcription termination factor activity
||
>>>
Function: binding
Function: nucleic acid binding
Function: RNA binding
||
>>>
Process: physiological process
Process: metabolism
Process: cellular metabolism
Process: nucleobase, nucleoside, nucleotide and nucleic acid metabolism
Process: transcription
Process: transcription, DNA-dependent
Process: transcription termination
||
>>>
Process: primary metabolism
Process: nucleobase, nucleoside, nucleotide and nucleic acid metabolism
Process: transcription
Process: transcription, DNA-dependent
Process: transcription termination
||
>>>
Process: cellular physiological process
Process: cellular metabolism
Process: nucleobase, nucleoside, nucleotide and nucleic acid metabolism
Process: transcription
Process: transcription, DNA-dependent
Process: transcription termination
||
>>>
Process: cellular process
Process: cellular physiological process
Process: cellular metabolism
Process: nucleobase, nucleoside, nucleotide and nucleic acid metabolism
Process: transcription
Process: transcription, DNA-dependent
Process: transcription termination
Process: physiological process
Process: metabolism
Process: regulation of metabolism
Process: regulation of cellular metabolism
Process: regulation of nucleobase, nucleoside, nucleotide and nucleic acid metabolism
Process: regulation of transcription
Process: regulation of transcription, DNA-dependent
||
>>>
Process: cellular metabolism
Process: nucleobase, nucleoside, nucleotide and nucleic acid metabolism
Process: transcription
Process: transcription, DNA-dependent
Process: regulation of transcription, DNA-dependent
||
>>>
Process: regulation of transcription
Process: regulation of transcription, DNA-dependent
||
>>>
Process: regulation of nucleobase, nucleoside, nucleotide and nucleic acid metabolism
Process: regulation of transcription
Process: regulation of transcription, DNA-dependent
||
>>>
Process: regulation of cellular metabolism
Process: regulation of nucleobase, nucleoside, nucleotide and nucleic acid metabolism
Process: regulation of transcription
Process: regulation of transcription, DNA-dependent
||
>>>
Process: primary metabolism
Process: nucleobase, nucleoside, nucleotide and nucleic acid metabolism
Process: transcription
Process: transcription, DNA-dependent
Process: regulation of transcription, DNA-dependent
||
>>>
Process: regulation of transcription
Process: regulation of transcription, DNA-dependent
||
>>>
Process: regulation of nucleobase, nucleoside, nucleotide and nucleic acid metabolism
Process: regulation of transcription
Process: regulation of transcription, DNA-dependent
||
>>>
Process: regulation of physiological process
Process: regulation of metabolism
Process: regulation of cellular metabolism
Process: regulation of nucleobase, nucleoside, nucleotide and nucleic acid metabolism
Process: regulation of transcription
Process: regulation of transcription, DNA-dependent
||
>>>
Process: regulation of cellular physiological process
Process: regulation of cellular metabolism
Process: regulation of nucleobase, nucleoside, nucleotide and nucleic acid metabolism
Process: regulation of transcription
Process: regulation of transcription, DNA-dependent
||
>>>
Process: cellular physiological process
Process: cellular metabolism
Process: nucleobase, nucleoside, nucleotide and nucleic acid metabolism
Process: transcription
Process: transcription, DNA-dependent
Process: regulation of transcription, DNA-dependent
||
>>>
Process: regulation of transcription
Process: regulation of transcription, DNA-dependent
||
>>>
Process: regulation of nucleobase, nucleoside, nucleotide and nucleic acid metabolism
Process: regulation of transcription
Process: regulation of transcription, DNA-dependent
||
>>>
Process: regulation of cellular metabolism
Process: regulation of nucleobase, nucleoside, nucleotide and nucleic acid metabolism
Process: regulation of transcription
Process: regulation of transcription, DNA-dependent
||
>>>
Process: regulation of cellular physiological process
Process: regulation of cellular metabolism
Process: regulation of nucleobase, nucleoside, nucleotide and nucleic acid metabolism
Process: regulation of transcription
Process: regulation of transcription, DNA-dependent
||
>>>
Process: cellular process
Process: regulation of cellular process
Process: regulation of cellular physiological process
Process: regulation of cellular metabolism
Process: regulation of nucleobase, nucleoside, nucleotide and nucleic acid metabolism
Process: regulation of transcription
Process: regulation of transcription, DNA-dependent
||
>>>
Process: cellular physiological process
Process: cellular metabolism
Process: nucleobase, nucleoside, nucleotide and nucleic acid metabolism
Process: transcription
Process: transcription, DNA-dependent
Process: regulation of transcription, DNA-dependent
||
>>>
Process: regulation of transcription
Process: regulation of transcription, DNA-dependent
||
>>>
Process: regulation of nucleobase, nucleoside, nucleotide and nucleic acid metabolism
Process: regulation of transcription
Process: regulation of transcription, DNA-dependent
||
>>>
Process: regulation of cellular metabolism
Process: regulation of nucleobase, nucleoside, nucleotide and nucleic acid metabolism
Process: regulation of transcription
Process: regulation of transcription, DNA-dependent
||
>>>
Process: regulation of cellular physiological process
Process: regulation of cellular metabolism
Process: regulation of nucleobase, nucleoside, nucleotide and nucleic acid metabolism
Process: regulation of transcription
Process: regulation of transcription, DNA-dependent
||
>>>
Process: regulation of biological process
Process: regulation of physiological process
Process: regulation of metabolism
Process: regulation of cellular metabolism
Process: regulation of nucleobase, nucleoside, nucleotide and nucleic acid metabolism
Process: regulation of transcription
Process: regulation of transcription, DNA-dependent
||
>>>
Process: regulation of cellular physiological process
Process: regulation of cellular metabolism
Process: regulation of nucleobase, nucleoside, nucleotide and nucleic acid metabolism
Process: regulation of transcription
Process: regulation of transcription, DNA-dependent
||
>>>
Process: regulation of cellular process
Process: regulation of cellular physiological process
Process: regulation of cellular metabolism
Process: regulation of nucleobase, nucleoside, nucleotide and nucleic acid metabolism
Process: regulation of transcription
Process: regulation of transcription, DNA-dependent
||
>>>
Component: Not Available
# Location:
Cytoplasm
# Blattner_Number:
b0416
# Gene_Sequence:
GTGAAACCTGCTGCTCGTCGCCGCGCTCGTGAGTGTGCCGTCCAGGCGCTCTACTCCTGGCAGTTGTCCC
AGAACGACATCGCTGATGTTGAATACCAGTTCCTGGCTGAACAGGATGTAAAAGACGTTGACGTCCTGTA
CTTCCGTGAGCTGCTGGCCGGGGTGGCGACTAATACCGCATACCTCGACGGACTGATGAAGCCATACCTG
TCCCGCCTGCTGGAAGAACTGGGACAGGTAGAAAAAGCAGTACTGCGCATTGCGCTGTACGAACTGTCTA
AACGTAGCGATGTGCCATACAAAGTGGCCATTAACGAAGCGATCGAACTGGCGAAATCGTTCGGCGCAGA
AGACAGCCATAAGTTCGTCAACGGCGTACTCGATAAAGCAGCACCTGTGATTCGCCCTAACAAAAAGTGA
# Upstream_100_bases:
ACCAAAGCTGGCAACAAAGGTGCAGAAGCTGCACTGACCGCGCTTGAAATGATTAATGTATTGAAAGCCA
TCAAGGCCTGAAATTAGTAAGGGGAAATCC
# Blattner_No_Ontology:
Transcription, RNA processing and degradation
# Gene_Position:
434361-434780 (Clockwise)
# Centisome_Position:
9.362
# Gene_Name:
nusB or ssyB
# GC_Content:
53.81%
# Metabolic_Importance:
Essential
# Preceding_Gene:
ribH
# Following_Gene:
thiL
# Operon_Status:
Yes
# Operon_Components:
ribH_nusB Ref: RegulonDB http://kinich.cifn.unam.mx:8850/db/regulondb_cgi.query_simple?v_organism=ECK12&v_table=3&v_name=nusB
# Paralogues:
None
# Copy Number:
900 Molecules/Cell In: Glucose minimal media
Ref: Neidhardt et al., Encyclopedia of E. coli and Salmonella, 1997
# RNA_Copy_No.:
Log phase (2max): 0.12
Stationary phase (2max): 0.1
Ref: Nature Biotech., 18, 1262-68, Dec. 2000 (PMID=11101804)
# Genbank_ID_(DNA):
G1786618
# Genbank_ID_(Protein):
AAC73519.1
# SWISS_PROT_(AC_&_ID):
$ NUSB_ECOLI (P0A780)
# 2D_Gel_Image:
Not Available
# Other_Databases:
- ECO2DBASE: H013.8
- ECOCYC: EG10666
- EcoGene: EG10666
- EMBL: X00681
- InterPro: IPR011605; IPR006027
- Pfam: PF01029
- PIR: I51822
# Pfam_Domain/Function:
PF01029 NusB family
# Homologues:
Not Available
# Similarity:
Belongs to the nusB family.
# EC_Number:
Not Available
# No._of_Amino_Acids:
139 (Translated Protein)
139 (Mature Protein)
# Molecular_Weight:
15689 15689
# Theoretical_pI:
7.35
# Theoretical_pI (Mature):
7.35
# Sequence:
// MKPAARRRARECAVQALYSWQLSQNDIADVEYQFLAEQDVKDVDVLYFRELLAGVATNTA
// YLDGLMKPYLSRLLEELGQVEKAVLRIALYELSKRSDVPYKVAINEAIELAKSFGAEDSH
// KFVNGVLDKAAPVIRPNKK
// /\
// MKPAARRRARECAVQALYSWQLSQNDIADVEYQFLAEQDVKDVDVLYFRELLAGVATNTA
// YLDGLMKPYLSRLLEELGQVEKAVLRIALYELSKRSDVPYKVAINEAIELAKSFGAEDSH
// KFVNGVLDKAAPVIRPNKK
# PROSITE_Motif:
Not Available
# Important_Sites:
Not Available
# Transmembrane:
Not Available
# Cys/Met_Content:
0.7 %Cys (Translated Protein)
1.4 %Met (Translated Protein)
2.2 %Cys+Met (Translated Protein)
0.7 %Cys (Mature Protein)
1.4 %Met (Mature Protein)
2.2 %Cys+Met (Mature Protein)
# Secondary_Structure_(PDB):
MKPAARRRARECAVQALYSWQLSQNDIADVEYQFLAEQDVKDVDVLYFREL
CCCCCCCCCCCHHHHHHHHHHHCCCCCHHHHHHHHHCCCCCCCCHHHHHHH
LAGVATNTAYLDGLMKPYLSRLLEELGQVEKAVLRIALYELSKRSDVPYKV
HHHCCCCCCHHHCCCCCCCCCCCCCCCHHHHHHHHHHHHHCCCCCCCCCCC
AINEAIELAKSFGAEDSHKFVNGVLDKAAPVIRPNKK
HHHHHHHHHHHHCCCCCCCHHHHHHHHHCCCCCCCCC
# PDB_Accession:
& 1BAQ
# Resolution:
NMR
# Structure_CLASS:
Mainly Alpha
# Quaternary_Structure:
monomer of nusB
# Interacting_Partners:
1) DNA,
# Cofactors:
Not Available
# Metals_Ions:
Not Available
# Kcat_Value_[1/min]:
Not Available
# Specific_Activity_[micromol/min/mg]:
Not Available
# Km_Value_[mM]:
Not Available
# Substrates:
Not Available
# Products:
Not Available
# Specific_Reaction:
Not Available
# General_Reaction:
Not Available
# Inhibitor:
Not Available
# Priority:
0.0
# Status:
Selected, Cloned, Expressed
# Availability:
Montreal-Kingston Bacterial Structural Genomics Initiative
#END_ECARDFILE
#BEGIN_ECARDFILE
# Entry_ID:
CC1942A.1
# Accession_No.:
UA0001942
# Name:
Inner membrane protein yohD
# Alternate_Names:
Not Available
# General_Function:
Unknown
# COG_Function:
Function unknown (code S)
# COG_ID:
COG0586 Uncharacterized membrane-associated protein (Evalue = 1e-109)
# Specific_Function:
Not Available
# Riley_Gene_Function:
putative integral membrane protein
# Riley_Cell_Function:
>>>
Cell structure
Membrane
# Gene_Ontology:
>>>
Function: Not Available
||
>>>
Process: Not Available
||
>>>
Component: Not Available
# Location:
Integral Membrane Protein
# Blattner_Number:
b2136
# Gene_Sequence:
ATGGATCTCAATACACTTATCTCACAATATGGTTATGCCGCGCTGGTGATCGGTAGCCTGGCGGAAGGTG
AAACCGTGACTTTGCTGGGAGGCGTTGCGGCGCATCAGGGGCTATTAAAGTTCCCGCTGGTGGTACTTTC
TGTGGCGCTTGGCGGCATGATTGGCGACCAGGTGCTCTATCTGTGCGGGCGGCGGTTTGGCGGCAAGCTG
TTACGCCGTTTCTCGAAACATCAGGATAAAATTGAGCGGGCGCAGAAACTTATCCAACGCCATCCGTATC
TGTTTGTCATTGGTACGCGCTTTATGTATGGCTTTCGGGTGATTGGCCCGACGCTGATTGGTGCCAGCCA
GCTGCCGCCGAAAATCTTTCTGCCGCTGAATATTCTCGGCGCATTTGCCTGGGCGTTGATTTTTACCACT
ATTGGTTACGCTGGTGGTCAGGTGATTGCGCCGTGGTTGCACAATCTCGACCAGCATTTGAAGCACTGGG
TCTGGTTGATTCTGGTCGTGGTTCTGGTGGTGGGCGTGCGCTGGTGGCTGAAACGACGCGGGAAGAAAAA
GCCGGATCATCAGGCGTAA
# Upstream_100_bases:
TCGCCCATGTAATTTTCACTGTCTGATGAACGTCCTTTTTCAGCGTGAATGATTCACAGGGTGTATGCTT
ACTGGCAACCAAAGGGAGACAGACTGGCCT
# Blattner_No_Ontology:
Hypothetical, unclassified, unknown
# Gene_Position:
2223823-2224401 (Clockwise)
# Centisome_Position:
47.931
# Gene_Name:
yohD
# GC_Content:
54.40%
# Metabolic_Importance:
Non_Essential
# Preceding_Gene:
yohC
# Following_Gene:
yohF
# Operon_Status:
No
# Operon_Components:
None
# Paralogues:
b3095 (yqjA) 27; b2317 (dedA) 28; b3009 (yghB) 24;
# Copy Number:
Unknown
# RNA_Copy_No.:
Log phase (2max): 0.04
Stationary phase (2max): 0.13
Ref: Nature Biotech., 18, 1262-68, Dec. 2000 (PMID=11101804)
# Genbank_ID_(DNA):
G1788458
# Genbank_ID_(Protein):
AAC75197.1
# SWISS_PROT_(AC_&_ID):
$ YOHD_ECOLI (P33366)
# 2D_Gel_Image:
Not Available
# Other_Databases:
- ECOCYC: EG12017
- EcoGene: EG12017
- EMBL: U00007
# Pfam_Domain/Function:
PF00597 DedA family
# Homologues:
Not Available
# Similarity:
Belongs to the dedA family.
# EC_Number:
Not Available
# No._of_Amino_Acids:
192 (Translated Protein)
192 (Mature Protein)
# Molecular_Weight:
21445 21445
# Theoretical_pI:
10.95
# Theoretical_pI (Mature):
10.95
# Sequence:
// MDLNTLISQYGYAALVIGSLAEGETVTLLGGVAAHQGLLKFPLVVLSVALGGMIGDQVLY
// LCGRRFGGKLLRRFSKHQDKIERAQKLIQRHPYLFVIGTRFMYGFRVIGPTLIGASQLPP
// KIFLPLNILGAFAWALIFTTIGYAGGQVIAPWLHNLDQHLKHWVWLILVVVLVVGVRWWL
// KRRGKKKPDHQA
// /\
// MDLNTLISQYGYAALVIGSLAEGETVTLLGGVAAHQGLLKFPLVVLSVALGGMIGDQVLY
// LCGRRFGGKLLRRFSKHQDKIERAQKLIQRHPYLFVIGTRFMYGFRVIGPTLIGASQLPP
// KIFLPLNILGAFAWALIFTTIGYAGGQVIAPWLHNLDQHLKHWVWLILVVVLVVGVRWWL
// KRRGKKKPDHQA
# PROSITE_Motif:
Not Available
# Important_Sites:
Not Available
# Transmembrane:
Transmembrane 41 61 Potential
Transmembrane 122 142 Potential
Transmembrane 160 180 Potential
# Cys/Met_Content:
0.5 %Cys (Translated Protein)
1.6 %Met (Translated Protein)
2.1 %Cys+Met (Translated Protein)
0.5 %Cys (Mature Protein)
1.6 %Met (Mature Protein)
2.1 %Cys+Met (Mature Protein)
# Secondary_Structure:
>YOHD_ECOLI (Translated Protein)
MDLNTLISQYGYAALVIGSLAEGETVTLLGGVAAHQGLLKFPLVVLSVALGGMIGDQVLY
CCHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHH
YLCGRRFGGKLLRRFSKHQDKIERAQKLIQRHPYLFVIGTRFMYGFRVIGPTLIGASQLP
HCCCHHHCCHHHHCCCCCHHHHHHHHHHHHHCCCEEEEEHHHHHHHHHHHHHHHHHHCCC
PPKIFLPLNILGAFAWALIFTTIGYAGGQVIAPWLHNLDQHLKHWVWLILVVVLVVGVRW
CCCHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHH
WWLKRRGKKKPDHQA
HHCCCCCCCCCCCCC
/\
>YOHD_ECOLI (Mature Protein)
DLNTLISQYGYAALVIGSLAEGETVTLLGGVAAHQGLLKFPLVVLSVALGGMIGDQVLYL
CHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHC
LCGRRFGGKLLRRFSKHQDKIERAQKLIQRHPYLFVIGTRFMYGFRVIGPTLIGASQLPP
CCCHHHCCHHHHCCCCCHHHHHHHHHHHHHCCCEEEEEHHHHHHHHHHHHHHHHHHCCCC
PKIFLPLNILGAFAWALIFTTIGYAGGQVIAPWLHNLDQHLKHWVWLILVVVLVVGVRWW
CCHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHH
WLKRRGKKKPDHQA
HCCCCCCCCCCCCC
# PDB_Accession:
& Not Available
# Resolution:
Not Available
# Structure_CLASS:
Mainly Alpha
# Quaternary_Structure:
Not Available
# Interacting_Partners:
Not Available
# Cofactors:
Not Available
# Metals_Ions:
Not Available
# Kcat_Value_[1/min]:
Not Available
# Specific_Activity_[micromol/min/mg]:
Not Available
# Km_Value_[mM]:
Not Available
# Substrates:
Not Available
# Products:
Not Available
# Specific_Reaction:
Not Available
# General_Reaction:
Not Available
# Inhibitor:
Not Available
# Priority:
6.2
# Status:
Not Available
# Availability:
Not Available
#END_ECARDFILE
#BEGIN_ECARDFILE
# Entry_ID:
CC1790A.1
# Accession_No.:
UA0001790
# Name:
Protein yiiM
# Alternate_Names:
Not Available
# General_Function:
Not Available
# COG_Function:
Function unknown (code S)
# COG_ID:
COG2258 Uncharacterized protein conserved in bacteria (Evalue = 1e-136)
# Specific_Function:
Not Available
# Riley_Gene_Function:
conserved hypothetical protein
# Riley_Cell_Function:
>>>
Not Available
# Gene_Ontology:
>>>
Function: Not Available
||
>>>
Process: Not Available
||
>>>
Component: Not Available
# Location:
Cytoplasm
# Blattner_Number:
b3910
# Gene_Sequence:
ATGCGATATCCGGTTGATGTATACACAGGCAAGATTCAGGCTTATCCCGAAGGCAAACCCAGCGCAATTG
CTAAAATCCAGGTTGATGGTGAGTTGATGCTGACGGAGCTGGGGCTGGAAGGTGACGAGCAGGCGGAGAA
AAAGGTTCACGGCGGGCCAGACAGAGCGCTGTGTCATTATCCTCGTGAGCATTATCTCTACTGGGCGCGG
GAATTTCCGGAACAGGCGGAGTTGTTTGTTGCGCCTGCGTTTGGTGAAAACCTCTCAACCGACGGCCTGA
CGGAAAGTAATGTTTATATGGGCGATATTTTCCGCTGGGGAGAGGCATTAATTCAGGTCAGCCAGCCGCG
CTCGCCTTGCTATAAACTCAATTACCATTTTGATATCAGCGATATAGCGCAGTTGATGCAAAACACAGGT
AAGGTGGGGTGGTTGTATAGCGTGATAGCGCCAGGGAAAGTGTCTGCGGACGCGCCGCTGGAGTTGGTTT
CCCGTGTCAGCGATGTGACCGTGCAGGAGGCTGCCGCCATCGCATGGCATATGCCGTTTGATGACGATCA
ATATCACCGTTTACTCTCCGCTGCCGGGTTATCGAAAAGCTGGACGCGGACGATGCAAAAGCGCCGACTG
AGCGGCAAGATCGAAGATTTTTCCCGCCGGTTGTGGGGAAAATAA
# Upstream_100_bases:
TTGCTATTGAGTTCCTGCCTGGATACTTACCGCGAAAACAGCACGCCTGACATAAAATAAATATGGTCTA
ATGGGGAAATTTCTCGTGGAGAGGGAACAG
# Blattner_No_Ontology:
Hypothetical, unclassified, unknown
# Gene_Position:
4100845-4101519 (Clockwise)
# Centisome_Position:
88.386
# Gene_Name:
yiiM
# GC_Content:
53.04%
# Metabolic_Importance:
Non_Essential
# Preceding_Gene:
kdgT
# Following_Gene:
cpxA
# Operon_Status:
No
# Operon_Components:
None
# Paralogues:
None
# Copy Number:
Unknown
# RNA_Copy_No.:
Log phase (2max): 0.05
Stationary phase (2max): 0.1
Ref: Nature Biotech., 18, 1262-68, Dec. 2000 (PMID=11101804)
# Genbank_ID_(DNA):
G1790345
# Genbank_ID_(Protein):
AAC76892.1
# SWISS_PROT_(AC_&_ID):
$ YIIM_ECOLI (P32157)
# 2D_Gel_Image:
Not Available
# Other_Databases:
- ECOCYC: EG11870
- EcoGene: EG11870
- EMBL: L19201
- InterPro: IPR005163; IPR005302
- Pfam: PF03475; PF03473
- PIR: S40854
# Pfam_Domain/Function:
PF03475 3-alpha domain; PF03473 MOSC domain;
# Homologues:
Not Available
# Similarity:
To H.influenzae HI0278.
# EC_Number:
Not Available
# No._of_Amino_Acids:
224 (Translated Protein)
224 (Mature Protein)
# Molecular_Weight:
25343 25343
# Theoretical_pI:
5.96
# Theoretical_pI (Mature):
5.96
# Sequence:
// MRYPVDVYTGKIQAYPEGKPSAIAKIQVDGELMLTELGLEGDEQAEKKVHGGPDRALCHY
// PREHYLYWAREFPEQAELFVAPAFGENLSTDGLTESNVYMGDIFRWGEALIQVSQPRSPC
// YKLNYHFDISDIAQLMQNTGKVGWLYSVIAPGKVSADAPLELVSRVSDVTVQEAAAIAWH
// MPFDDDQYHRLLSAAGLSKSWTRTMQKRRLSGKIEDFSRRLWGK
// /\
// MRYPVDVYTGKIQAYPEGKPSAIAKIQVDGELMLTELGLEGDEQAEKKVHGGPDRALCHY
// PREHYLYWAREFPEQAELFVAPAFGENLSTDGLTESNVYMGDIFRWGEALIQVSQPRSPC
// YKLNYHFDISDIAQLMQNTGKVGWLYSVIAPGKVSADAPLELVSRVSDVTVQEAAAIAWH
// MPFDDDQYHRLLSAAGLSKSWTRTMQKRRLSGKIEDFSRRLWGK
# PROSITE_Motif:
Not Available
# Important_Sites:
Not Available
# Transmembrane:
Not Available
# Cys/Met_Content:
0.9 %Cys (Translated Protein)
2.7 %Met (Translated Protein)
3.6 %Cys+Met (Translated Protein)
0.9 %Cys (Mature Protein)
2.7 %Met (Mature Protein)
3.6 %Cys+Met (Mature Protein)
# Secondary_Structure:
>YIIM_ECOLI (Translated Protein)
MGKFLVEREQMRYPVDVYTGKIQAYPEGKPSAIAKIQVDGELMLTELGLEGDEQAEKKVH
CCCCCCCCCCCCEEEEEEECCEEECCCCCCCCCCEECCCHHHEEECCCCCCCCCCCCCCC
GGPDRALCHYPREHYLYWAREFPEQAELFVAPAFGENLSTDGLTESNVYMGDIFRWGEAL
CCCHHEEEECCCCCHHHHHHHHCCCCCCCCCCCCCCCCEEECCCCCCCCCCCEEEECCEE
IQVSQPRSPCYKLNYHFDISDIAQLMQNTGKVGWLYSVIAPGKVSADAPLELVSRVSDVT
EEEECCCCCHHHHCCCCCCHHHHHHHHHCCCCCEEEEEECCCEECCCCEEEECCCCCCCH
VQEAAAIAWHMPFDDDQYHRLLSAAGLSKSWTRTMQKRRLSGKIEDFSRRLWGK
HHHHHHHHCCCCCCHHHHHHHHCHHHHCHHHHHHHHHHHHCCCCCCCCCCCCCC
/\
>YIIM_ECOLI (Mature Protein)
GKFLVEREQMRYPVDVYTGKIQAYPEGKPSAIAKIQVDGELMLTELGLEGDEQAEKKVHG
CCCCCCCCCCCEEEEEEECCEEECCCCCCCCCCEECCCHHHEEECCCCCCCCCCCCCCCC
GPDRALCHYPREHYLYWAREFPEQAELFVAPAFGENLSTDGLTESNVYMGDIFRWGEALI
CCHHEEEECCCCCHHHHHHHHCCCCCCCCCCCCCCCCEEECCCCCCCCCCCEEEECCEEE
QVSQPRSPCYKLNYHFDISDIAQLMQNTGKVGWLYSVIAPGKVSADAPLELVSRVSDVTV
EEECCCCCHHHHCCCCCCHHHHHHHHHCCCCCEEEEEECCCEECCCCEEEECCCCCCCHH
QEAAAIAWHMPFDDDQYHRLLSAAGLSKSWTRTMQKRRLSGKIEDFSRRLWGK
HHHHHHHCCCCCCHHHHHHHHCHHHHCHHHHHHHHHHHHCCCCCCCCCCCCCC
# PDB_Accession:
& Not Available
# Resolution:
Not Available
# Structure_CLASS:
Alpha Beta
# Quaternary_Structure:
Not Available
# Interacting_Partners:
Not Available
# Cofactors:
Not Available
# Metals_Ions:
Not Available
# Kcat_Value_[1/min]:
Not Available
# Specific_Activity_[micromol/min/mg]:
Not Available
# Km_Value_[mM]:
Not Available
# Substrates:
Not Available
# Products:
Not Available
# Specific_Reaction:
Not Available
# General_Reaction:
Not Available
# Inhibitor:
Not Available
# Priority:
8.7
# Status:
Selected, Expressed
# Availability:
Montreal-Kingston Bacterial Structural Genomics Initiative
#END_ECARDFILE
#BEGIN_ECARDFILE
# Entry_ID:
CC3191A.1
# Accession_No.:
UA0003191
# Name:
Enhancing lycopene biosynthesis protein 1
# Alternate_Names:
Not Available
# General_Function:
Not Available
# COG_Function:
Not Available
# COG_ID:
Not Available
# Specific_Function:
Not Available
# Riley_Gene_Function:
enhancing lycopene biosynthesis protein 1
# Riley_Cell_Function:
>>>
Not Available
# Gene_Ontology:
>>>
Function: Not Available
||
>>>
Process: Not Available
||
>>>
Component: Not Available
# Location:
Cytoplasm
# Blattner_Number:
b1160
# Gene_Sequence:
ATGAAGTGGATAGTAATTGACACGGTAATTCAACCTACATGTGGTATATCTTTTTCAGCCATATGGGGTA
ATATGAAAATGATCATCTGGTATCAATCTACTATATTTCTCCCTCCTGGCAGTATATTTACACCGGTTAA
GTCTGGTATTATCCTTAAGGATAAAGAATATCCTATTACTATTTATCACATCGCACCATTCAACAAGGAT
TTATGGAGTTTACTCAAAAGCAGTCAAGAGTGTCCTCCAGGAGAAAGCAAAATAACAAATAAATGTTTAC
ATAATAGTTGCATTATAAAAATATGCCCATATGGGCTCAAGTAA
# Upstream_100_bases:
AATTTATTTTTTTGAGGGGGGGGTAATATACTCATATGCAAAATCAAGAAATAAACATCCTAATGAACCA
TATTAAATACCGTGGGATAAGACATAACAA
# Blattner_No_Ontology:
Hypothetical, unclassified, unknown
# Gene_Position:
1210903-1211226 (Counter Clockwise)
# Centisome_Position:
26.106
# Gene_Name:
elbA or elb1
# GC_Content:
33.95%
# Metabolic_Importance:
Unknown
# Preceding_Gene:
mcrA
# Following_Gene:
ycgX
# Operon_Status:
No
# Operon_Components:
None
# Paralogues:
None
# Copy Number:
Unknown
# RNA_Copy_No.:
Log phase (2max): 0.04
Stationary phase (2max): 0.12
Ref: Nature Biotech., 18, 1262-68, Dec. 2000 (PMID=11101804)
# Genbank_ID_(DNA):
G1787407
# Genbank_ID_(Protein):
AAC74244.1
# SWISS_PROT_(AC_&_ID):
$ ELBA_ECOLI (P75987)
# 2D_Gel_Image:
Not Available
# Other_Databases:
- ECOCYC: EG13885
- EcoGene: EG13885
- EMBL: U00096
- PIR: E64861
# Pfam_Domain/Function:
None
# Homologues:
Not Available
# Similarity:
Not Available
# EC_Number:
Not Available
# No._of_Amino_Acids:
107 (Translated Protein)
107 (Mature Protein)
# Molecular_Weight:
12134 12134
# Theoretical_pI:
9.01
# Theoretical_pI (Mature):
9.01
# Sequence:
// MKWIVIDTVIQPTCGISFSAIWGNMKMIIWYQSTIFLPPGSIFTPVKSGIILKDKEYPIT
// IYHIAPFNKDLWSLLKSSQECPPGESKITNKCLHNSCIIKICPYGLK
// /\
// MKWIVIDTVIQPTCGISFSAIWGNMKMIIWYQSTIFLPPGSIFTPVKSGIILKDKEYPIT
// IYHIAPFNKDLWSLLKSSQECPPGESKITNKCLHNSCIIKICPYGLK
# PROSITE_Motif:
Not Available
# Important_Sites:
Not Available
# Transmembrane:
Not Available
# Cys/Met_Content:
4.7 %Cys (Translated Protein)
2.8 %Met (Translated Protein)
7.5 %Cys+Met (Translated Protein)
4.7 %Cys (Mature Protein)
2.8 %Met (Mature Protein)
7.5 %Cys+Met (Mature Protein)
# Secondary_Structure:
>ELBA_ECOLI (Translated Protein)
MKWIVIDTVIQPTCGISFSAIWGNMKMIIWYQSTIFLPPGSIFTPVKSGIILKDKEYPIT
CCEEEEEEEECCCCCEEEEEEECCCEEEEEECCEEECCCCCEEEECCCEEEEECCCCCEE
IYHIAPFNKDLWSLLKSSQECPPGESKITNKCLHNSCIIKICPYGLK
EEEECCCCHHHHHHHHHCCCCCCCCCCCCCCCCCCCEEEEECCCCCC
/\
>ELBA_ECOLI (Mature Protein)
KWIVIDTVIQPTCGISFSAIWGNMKMIIWYQSTIFLPPGSIFTPVKSGIILKDKEYPITI
CEEEEEEEECCCCCEEEEEEECCCEEEEEECCEEECCCCCEEEECCCEEEEECCCCCEEE
YHIAPFNKDLWSLLKSSQECPPGESKITNKCLHNSCIIKICPYGLK
EEECCCCHHHHHHHHHCCCCCCCCCCCCCCCCCCCEEEEECCCCCC
# PDB_Accession:
& Not Available
# Resolution:
Not Available
# Structure_CLASS:
Mainly Beta
# Quaternary_Structure:
Not Available
# Interacting_Partners:
Not Available
# Cofactors:
Not Available
# Metals_Ions:
Not Available
# Kcat_Value_[1/min]:
Not Available
# Specific_Activity_[micromol/min/mg]:
Not Available
# Km_Value_[mM]:
Not Available
# Substrates:
Not Available
# Products:
Not Available
# Specific_Reaction:
Not Available
# General_Reaction:
Not Available
# Inhibitor:
Not Available
# Priority:
8
# Status:
Selected, Cloned, Expressed, Soluble, Crystallized
# Availability:
Montreal-Kingston Bacterial Structural Genomics Initiative
#END_ECARDFILE
#BEGIN_ECARDFILE
# Entry_ID:
CC2203A.1
# Accession_No.:
UA0002203
# Name:
Hypothetical protein ycaI
# Alternate_Names:
Not Available
# General_Function:
Metallo-hydrolase/oxidoreductase
# COG_Function:
General function prediction only (code R)
# COG_ID:
COG0658 Predicted membrane metal-binding protein (Evalue = 0.0)
# Specific_Function:
Genes ycaI-msbA-lpxK-ycaQ-ycaR-kdsB are regulated by transcriptional attenuation.
# Riley_Gene_Function:
putative recombination protein, metallo-hydrolase domain; conserved inner membrane protein
# Riley_Cell_Function:
>>>
Not Available
# Gene_Ontology:
>>>
Function: Not Available
||
>>>
Process: development
Process: genetic transfer
Process: DNA mediated transformation
Process: establishment of competence for transformation
||
>>>
Process: interaction between organisms
Process: genetic transfer
Process: DNA mediated transformation
Process: establishment of competence for transformation
||
>>>
Component: cell
Component: membrane
Component: intrinsic to membrane
Component: integral to membrane
# Location:
inner membrane
# Blattner_Number:
b0913
# Gene_Sequence:
ATGAAAATAACGACAGTCGGTGTATGCATAATTAGCGGAATTTTTCCGTTGCTGATTTTGCCCCAATTGC
CTGGGACATTAACCCTTGCGTTTCTGACTCTCTTCGCCTGCGTACTGGCATTTATCCCTGTTAAAACCGT
CCGTTATATCGCGCTGACGTTGCTGTTTTTCGTTTGGGGCATATTATCAGCAAAGCAAATTTTGTGGGCA
GGAGAAACCTTAACTGGCGCGACGCAGGATGCAATTGTTGAGATCACTGCAACTGACGGCATGACCACTC
ATTACGGTCAAATTACTCATCTACAAGGTCGACGTATATTCCCTGCGTCAGGTCTCGTGATGTATGGCGA
ATATCTTCCGCAAGCGGTTTGTGCTGGACAACAATGGTCAATGAAACTCAAAGTTCGTGCAGTTCATGGC
CAACTTAATGATGGCGGCTTTGATAGCCAGCGTTATGCCATTGCCCAGCATCAGCCGCTCACCGGCCGTT
TTCTGCAGGCAAGTGTCATTGAACCGAATTGTAGCCTGCGTGCACAGTATCTGGCGTCACTACAAACAAC
GCTGCAACCCTATCCGTGGAATGCGGTTATTCTTGGTTTAGGTATGGGGGAACGGTTATCCGTCCCCAAA
GAAATCAAAAATATCATGCGCGATACTGGAACGGCGCATTTAATGGCGATATCGGGATTGCACATCGCTT
TTGCGGCGTTGCTGGCTGCCGGACTCATTCGCAGTGGACAAATTTTTCTGCCTGGGCGCTGGATCCACTG
GCAAATACCATTAATTGGCGGAATCTGCTGTGCTGCTTTTTATGCCTGGTTGACGGGAATGCAACCTCCT
GCATTGCGTACCATGGTGGCGCTTGCTACGTGGGGAATGCTTAAGTTAAGTGGGCGACAGTGGAGTGGCT
GGGATGTATGGATATGTTGTCTGGCGGCAATTTTGCTGATGGATCCTGTTGCCATTCTCTCGCAAAGTTT
ATGGCTCTCTGCCGCTGCGGTCGCGGCATTGATATTTTGGTATCAGTGGTTTCCCTGTCCTGAGTGGCAA
CTGCCGCCGGTATTGCGTGCAGTTGTTTCCCTCATCCATCTGCAACTGGGAATCACACTTCTGCTTATGC
CCGTGCAAATCGTCATATTTCATGGCATTAGTCTGACCTCGTTTATTGCAAATCTATTAGCAATTCCCTT
GGTGACATTTATCACGGTTCCGTTGATCCTCGCCGCGATGGTTGTGCATTTAAGCGGGCCGTTAATCCTG
GAGCAAGGGTTATGGTTTCTTGCCGACCGGTCTTTGGCTTTACTTTTCTGGGGGTTAAAGAGTTTGCCGG
AAGGGTGGATCAACATTGCTGAATGTTGGCAATGGCTATCATTTTCCCCATGGTTCTTACTGGTGGTATG
GCGATTAAACGCCTGGCGAACGTTGCCAGCAATGTGTGTGGCTGGAGGCTTGCTGATGTGCTGGCCGCTG
TGGCAAAAACCTCGACCTGACGAGTGGCAGCTGTACATGCTTGATGTCGGGCAAGGGCTGGCAATGGTGA
TAGCCAGAAACGGCAAAGCGATTCTCTATGACACAGGACTGGCCTGGCCTGAAGGGGATAGTGGGCAACA
ACTGATTATCCCCTGGCTCCACTGGCATAATCTTGAACCGGAAGGCGTTATTCTGAGCCATGAACATCTG
GATCACCGGGGAGGGCTGGATTCAATATTGCATATATGGCCGATGTTATGGATCAGAAGTCCGTTAAACT
GGGAACATCATCAGCCCTGTGTGCGTGGCGAAGCGTGGCAATGGCAAGGATTGCGTTTCAGCGCGCACTG
GCCTTTACAAGGTAGCAACGATAAAGGAAATAACCATTCCTGTGTGGTTAAGGTTGATGACGGGACGAAT
AGCATTCTTCTAACCGGTGATATTGAAGCCCCAGCTGAACAAAAGATGCTAAGCCGTTACTGGCAGCAAG
TGCAGGCAACATTGCTTCAGGTACCTCACCATGGCAGTAATACCTCATCATCGTTGCCATTAATTCAGCG
AGTGAATGGAAAAGTGGCACTCGCATCGGCATCGCGCTATAACGCATGGCGACTGCCCTCTAACAAAGTT
AAGCATCGCTATCAACTGCAAGGATATCAATGGATTGATACTCCACATCAAGGTCAAACAACGGTCAATT
TTTCAGCGCAAGGCTGGCGGATTAGCAGCCTCAGGGAGCAAATTTTACCTCGTTGGTATCATCAGTGGTT
TGGCGTGCCAGTGGATAACGGGTAG
# Upstream_100_bases:
CTTTCGTTAAATTCTTCTGAATATGCCTCGGGGAACGCAAAATTCCCACCAGACAACCGCTCAACAAAGT
TGCACACTTTCCATAAACAGGGAGGGGTGC
# Blattner_No_Ontology:
Hypothetical, unclassified, unknown
# Gene_Position:
963543-965807 (Clockwise)
# Centisome_Position:
20.767
# Gene_Name:
ycaI
# GC_Content:
49.49%
# Metabolic_Importance:
Unknown
# Preceding_Gene:
ihfB
# Following_Gene:
msbA
# Operon_Status:
No
# Operon_Components:
None
# Paralogues:
None
# Copy Number:
Unknown
# RNA_Copy_No.:
Log phase (2max): 0.05
Stationary phase (2max): 0.06
Ref: Nature Biotech., 18, 1262-68, Dec. 2000 (PMID=11101804)
# Genbank_ID_(DNA):
G1787142
# Genbank_ID_(Protein):
AAC73999.1
# SWISS_PROT_(AC_&_ID):
$ YCAI_ECOLI (P37443)
# 2D_Gel_Image:
Not Available
# Other_Databases:
- ECOCYC: EG12375
- EcoGene: EG12375
- EMBL: U00096
- InterPro: IPR001279; IPR004477; IPR004797
- Pfam: PF03772; PF00753
- PIR: H64830
# Pfam_Domain/Function:
PF03772 Competence protein; PF00753 Metallo-beta-lactamase superfamily;
# Homologues:
Not Available
# Similarity:
To B.subtilis comEC, N.gonorrhoeae comA, and H.influenzae rec2.
# EC_Number:
Not Available
# No._of_Amino_Acids:
754 (Translated Protein)
718 (Mature Protein)
# Molecular_Weight:
84475 80676
# Theoretical_pI:
8.53
# Theoretical_pI (Mature):
8.48
# Sequence:
// MKITTVGVCIISGIFPLLILPQLPGTLTLAFLTLFACVLAFIPVKTVRYIALTLLFFVWG
// ILSAKQILWAGETLTGATQDAIVEITATDGMTTHYGQITHLQGRRIFPASGLVMYGEYLP
// QAVCAGQQWSMKLKVRAVHGQLNDGGFDSQRYAIAQHQPLTGRFLQASVIEPNCSLRAQY
// LASLQTTLQPYPWNAVILGLGMGERLSVPKEIKNIMRDTGTAHLMAISGLHIAFAALLAA
// GLIRSGQIFLPGRWIHWQIPLIGGICCAAFYAWLTGMQPPALRTMVALATWGMLKLSGRQ
// WSGWDVWICCLAAILLMDPVAILSQSLWLSAAAVAALIFWYQWFPCPEWQLPPVLRAVVS
// LIHLQLGITLLLMPVQIVIFHGISLTSFIANLLAIPLVTFITVPLILAAMVVHLSGPLIL
// EQGLWFLADRSLALLFWGLKSLPEGWINIAECWQWLSFSPWFLLVVWRLNAWRTLPAMCV
// AGGLLMCWPLWQKPRPDEWQLYMLDVGQGLAMVIARNGKAILYDTGLAWPEGDSGQQLII
// PWLHWHNLEPEGVILSHEHLDHRGGLDSILHIWPMLWIRSPLNWEHHQPCVRGEAWQWQG
// LRFSAHWPLQGSNDKGNNHSCVVKVDDGTNSILLTGDIEAPAEQKMLSRYWQQVQATLLQ
// VPHHGSNTSSSLPLIQRVNGKVALASASRYNAWRLPSNKVKHRYQLQGYQWIDTPHQGQT
// TVNFSAQGWRISSLREQILPRWYHQWFGVPVDNG
// /\
// CVLAFIPVKTVRYIALTLLFFVWGILSAKQILWAGETLTGATQDAIVEITATDGMTTHYG
// QITHLQGRRIFPASGLVMYGEYLPQAVCAGQQWSMKLKVRAVHGQLNDGGFDSQRYAIAQ
// HQPLTGRFLQASVIEPNCSLRAQYLASLQTTLQPYPWNAVILGLGMGERLSVPKEIKNIM
// RDTGTAHLMAISGLHIAFAALLAAGLIRSGQIFLPGRWIHWQIPLIGGICCAAFYAWLTG
// MQPPALRTMVALATWGMLKLSGRQWSGWDVWICCLAAILLMDPVAILSQSLWLSAAAVAA
// LIFWYQWFPCPEWQLPPVLRAVVSLIHLQLGITLLLMPVQIVIFHGISLTSFIANLLAIP
// LVTFITVPLILAAMVVHLSGPLILEQGLWFLADRSLALLFWGLKSLPEGWINIAECWQWL
// SFSPWFLLVVWRLNAWRTLPAMCVAGGLLMCWPLWQKPRPDEWQLYMLDVGQGLAMVIAR
// NGKAILYDTGLAWPEGDSGQQLIIPWLHWHNLEPEGVILSHEHLDHRGGLDSILHIWPML
// WIRSPLNWEHHQPCVRGEAWQWQGLRFSAHWPLQGSNDKGNNHSCVVKVDDGTNSILLTG
// DIEAPAEQKMLSRYWQQVQATLLQVPHHGSNTSSSLPLIQRVNGKVALASASRYNAWRLP
// SNKVKHRYQLQGYQWIDTPHQGQTTVNFSAQGWRISSLREQILPRWYHQWFGVPVDNG
# PROSITE_Motif:
Not Available
# Important_Sites:
Not Available
# Transmembrane:
Transmembrane 3 23 Potential
Transmembrane 24 44 Potential
Transmembrane 50 70 Potential
Transmembrane 223 243 Potential
Transmembrane 254 274 Potential
Transmembrane 320 340 Potential
Transmembrane 370 390 Potential
Transmembrane 392 412 Potential
Transmembrane 446 466 Potential
Transmembrane 471 491 Potential
# Cys/Met_Content:
1.9 %Cys (Translated Protein)
2.5 %Met (Translated Protein)
4.4 %Cys+Met (Translated Protein)
1.8 %Cys (Mature Protein)
2.5 %Met (Mature Protein)
4.3 %Cys+Met (Mature Protein)
# Secondary_Structure:
>YCAI_ECOLI (Translated Protein)
MPRGTQNSHQTTAQQSCTLSINREGCMKITTVGVCIISGIFPLLILPQLPGTLTLAFLTL
CCCCCCCCCEEECCCEEEEEECCCCCEEEEEEEEEEECCHHHHHHCCCCCCHHHHHHHHH
FACVLAFIPVKTVRYIALTLLFFVWGILSAKQILWAGETLTGATQDAIVEITATDGMTTH
HHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCEEEEEEEECCCCCEEE
YGQITHLQGRRIFPASGLVMYGEYLPQAVCAGQQWSMKLKVRAVHGQLNDGGFDSQRYAI
EEEEEECCCCCEECCHHHHHCCCCCCHHHHCCCEEEEEEEEEECEEEECCCCCCHHHHHH
AQHQPLTGRFLQASVIEPNCSLRAQYLASLQTTLQPYPWNAVILGLGMGERLSVPKEIKN
HCCCCEEEEEEEEEEECHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHCCCCCCCCHHHHH
IMRDTGTAHLMAISGLHIAFAALLAAGLIRSGQIFLPGRWIHWQIPLIGGICCAAFYAWL
HHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCEEECCCCCCCCHHHHHHHHHHC
TGMQPPALRTMVALATWGMLKLSGRQWSGWDVWICCLAAILLMDPVAILSQSLWLSAAAV
CCCCHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHH
AALIFWYQWFPCPEWQLPPVLRAVVSLIHLQLGITLLLMPVQIVIFHGISLTSFIANLLA
HHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHH
IPLVTFITVPLILAAMVVHLSGPLILEQGLWFLADRSLALLFWGLKSLPEGWINIAECWQ
CCHHEEHHHHHHHHHHHHHCCCHHHHHCCCEEECCCHHHHHHHHHHHCCHHHHHHHHHCC
WLSFSPWFLLVVWRLNAWRTLPAMCVAGGLLMCWPLWQKPRPDEWQLYMLDVGQGLAMVI
CCCCCCEEEEEEHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCEEEEEEECCCCCEEEE
ARNGKAILYDTGLAWPEGDSGQQLIIPWLHWHNLEPEGVILSHEHLDHRGGLDSILHIWP
EECCCEEEEECCCCCCCCCCHHHHHHHHHHHCCCCCCEEEEECCCCCCCCCHHHHHHHCC
MLWIRSPLNWEHHQPCVRGEAWQWQGLRFSAHWPLQGSNDKGNNHSCVVKVDDGTNSILL
EEEEECCCCCCCCEEECCCCEEEECCEEEEEEECCCCCCCCCCCCEEEEEEEECCCEEEE
TGDIEAPAEQKMLSRYWQQVQATLLQVPHHGSNTSSSLPLIQRVNGKVALASASRYNAWR
ECCCCHHHHHHHHCCCCCCCEEEEEEEECCCCCCCCCHHHHHHHCCCEEEEEECCCCCCC
LPSNKVKHRYQLQGYQWIDTPHQGQTTVNFSAQGWRISSLREQILPRWYHQWFGVPVDNG
CCCHHHHHHHHHCCCEEECCCCCCEEEEEEECCEEEEEEEEHHCCCHHHHHHCCEECCCC
/\
>YCAI_ECOLI (Mature Protein)
PRGTQNSHQTTAQQSCTLSINREGCMKITTVGVCIISGIFPLLILPQLPGTLTLAFLTLF
CCCCCCCCEEECCCEEEEEECCCCCEEEEEEEEEEECCHHHHHHCCCCCCHHHHHHHHHH
ACVLAFIPVKTVRYIALTLLFFVWGILSAKQILWAGETLTGATQDAIVEITATDGMTTHY
HHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCEEEEEEEECCCCCEEEE
GQITHLQGRRIFPASGLVMYGEYLPQAVCAGQQWSMKLKVRAVHGQLNDGGFDSQRYAIA
EEEEECCCCCEECCHHHHHCCCCCCHHHHCCCEEEEEEEEEECEEEECCCCCCHHHHHHH
QHQPLTGRFLQASVIEPNCSLRAQYLASLQTTLQPYPWNAVILGLGMGERLSVPKEIKNI
CCCCEEEEEEEEEEECHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHCCCCCCCCHHHHHH
MRDTGTAHLMAISGLHIAFAALLAAGLIRSGQIFLPGRWIHWQIPLIGGICCAAFYAWLT
HHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCEEECCCCCCCCHHHHHHHHHHCC
GMQPPALRTMVALATWGMLKLSGRQWSGWDVWICCLAAILLMDPVAILSQSLWLSAAAVA
CCCHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHH
ALIFWYQWFPCPEWQLPPVLRAVVSLIHLQLGITLLLMPVQIVIFHGISLTSFIANLLAI
HHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHC
PLVTFITVPLILAAMVVHLSGPLILEQGLWFLADRSLALLFWGLKSLPEGWINIAECWQW
CHHEEHHHHHHHHHHHHHCCCHHHHHCCCEEECCCHHHHHHHHHHHCCHHHHHHHHHCCC
LSFSPWFLLVVWRLNAWRTLPAMCVAGGLLMCWPLWQKPRPDEWQLYMLDVGQGLAMVIA
CCCCCEEEEEEHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCEEEEEEECCCCCEEEEE
RNGKAILYDTGLAWPEGDSGQQLIIPWLHWHNLEPEGVILSHEHLDHRGGLDSILHIWPM
ECCCEEEEECCCCCCCCCCHHHHHHHHHHHCCCCCCEEEEECCCCCCCCCHHHHHHHCCE
LWIRSPLNWEHHQPCVRGEAWQWQGLRFSAHWPLQGSNDKGNNHSCVVKVDDGTNSILLT
EEEECCCCCCCCEEECCCCEEEECCEEEEEEECCCCCCCCCCCCEEEEEEEECCCEEEEE
GDIEAPAEQKMLSRYWQQVQATLLQVPHHGSNTSSSLPLIQRVNGKVALASASRYNAWRL
CCCCHHHHHHHHCCCCCCCEEEEEEEECCCCCCCCCHHHHHHHCCCEEEEEECCCCCCCC
PSNKVKHRYQLQGYQWIDTPHQGQTTVNFSAQGWRISSLREQILPRWYHQWFGVPVDNG
CCHHHHHHHHHCCCEEECCCCCCEEEEEEECCEEEEEEEEHHCCCHHHHHHCCEECCCC
# PDB_Accession:
& Not Available
# Resolution:
Not Available
# Structure_CLASS:
Alpha Beta
# Quaternary_Structure:
Not Available
# Interacting_Partners:
Not Available
# Cofactors:
Not Available
# Metals_Ions:
Not Available
# Kcat_Value_[1/min]:
Not Available
# Specific_Activity_[micromol/min/mg]:
Not Available
# Km_Value_[mM]:
Not Available
# Substrates:
Not Available
# Products:
Not Available
# Specific_Reaction:
Not Available
# General_Reaction:
Not Available
# Inhibitor:
Not Available
# Priority:
9.2
# Status:
Selected, Cloned
# Availability:
Montreal-Kingston Bacterial Structural Genomics Initiative
#END_ECARDFILE
#BEGIN_ECARDFILE
# Entry_ID:
CC3796A.1
# Accession_No.:
UA0003796
# Name:
Putative HTH-type transcriptional regulator ydjF
# Alternate_Names:
Not Available
# General_Function:
Winged helix
# COG_Function:
Transcription (code K)
# COG_ID:
COG1842 Phage shock protein A (IM30), suppresses sigma54-dependent transcription (Evalue = 1e-138)
# Specific_Function:
Not Available
# Riley_Gene_Function:
putative transcriptional regulator (DeoR family); predicted DNA-binding transcriptional regulator
# Riley_Cell_Function:
>>>
Information transfer
RNA related
Transcription related
||
>>>
Regulation
Type of regulation
Transcriptional level
# Gene_Ontology:
>>>
Function: binding
Function: nucleic acid binding
Function: DNA binding
Function: transcription factor activity
||
>>>
Function: transcription regulator activity
Function: transcription factor activity
||
>>>
Process: physiological process
Process: metabolism
Process: regulation of metabolism
Process: regulation of cellular metabolism
Process: regulation of nucleobase, nucleoside, nucleotide and nucleic acid metabolism
Process: regulation of transcription
Process: regulation of transcription, DNA-dependent
||
>>>
Process: cellular metabolism
Process: nucleobase, nucleoside, nucleotide and nucleic acid metabolism
Process: transcription
Process: transcription, DNA-dependent
Process: regulation of transcription, DNA-dependent
||
>>>
Process: regulation of transcription
Process: regulation of transcription, DNA-dependent
||
>>>
Process: regulation of nucleobase, nucleoside, nucleotide and nucleic acid metabolism
Process: regulation of transcription
Process: regulation of transcription, DNA-dependent
||
>>>
Process: regulation of cellular metabolism
Process: regulation of nucleobase, nucleoside, nucleotide and nucleic acid metabolism
Process: regulation of transcription
Process: regulation of transcription, DNA-dependent
||
>>>
Process: primary metabolism
Process: nucleobase, nucleoside, nucleotide and nucleic acid metabolism
Process: transcription
Process: transcription, DNA-dependent
Process: regulation of transcription, DNA-dependent
||
>>>
Process: regulation of transcription
Process: regulation of transcription, DNA-dependent
||
>>>
Process: regulation of nucleobase, nucleoside, nucleotide and nucleic acid metabolism
Process: regulation of transcription
Process: regulation of transcription, DNA-dependent
||
>>>
Process: regulation of physiological process
Process: regulation of metabolism
Process: regulation of cellular metabolism
Process: regulation of nucleobase, nucleoside, nucleotide and nucleic acid metabolism
Process: regulation of transcription
Process: regulation of transcription, DNA-dependent
||
>>>
Process: regulation of cellular physiological process
Process: regulation of cellular metabolism
Process: regulation of nucleobase, nucleoside, nucleotide and nucleic acid metabolism
Process: regulation of transcription
Process: regulation of transcription, DNA-dependent
||
>>>
Process: cellular physiological process
Process: cellular metabolism
Process: nucleobase, nucleoside, nucleotide and nucleic acid metabolism
Process: transcription
Process: transcription, DNA-dependent
Process: regulation of transcription, DNA-dependent
||
>>>
Process: regulation of transcription
Process: regulation of transcription, DNA-dependent
||
>>>
Process: regulation of nucleobase, nucleoside, nucleotide and nucleic acid metabolism
Process: regulation of transcription
Process: regulation of transcription, DNA-dependent
||
>>>
Process: regulation of cellular metabolism
Process: regulation of nucleobase, nucleoside, nucleotide and nucleic acid metabolism
Process: regulation of transcription
Process: regulation of transcription, DNA-dependent
||
>>>
Process: regulation of cellular physiological process
Process: regulation of cellular metabolism
Process: regulation of nucleobase, nucleoside, nucleotide and nucleic acid metabolism
Process: regulation of transcription
Process: regulation of transcription, DNA-dependent
||
>>>
Process: cellular process
Process: regulation of cellular process
Process: regulation of cellular physiological process
Process: regulation of cellular metabolism
Process: regulation of nucleobase, nucleoside, nucleotide and nucleic acid metabolism
Process: regulation of transcription
Process: regulation of transcription, DNA-dependent
||
>>>
Process: cellular physiological process
Process: cellular metabolism
Process: nucleobase, nucleoside, nucleotide and nucleic acid metabolism
Process: transcription
Process: transcription, DNA-dependent
Process: regulation of transcription, DNA-dependent
||
>>>
Process: regulation of transcription
Process: regulation of transcription, DNA-dependent
||
>>>
Process: regulation of nucleobase, nucleoside, nucleotide and nucleic acid metabolism
Process: regulation of transcription
Process: regulation of transcription, DNA-dependent
||
>>>
Process: regulation of cellular metabolism
Process: regulation of nucleobase, nucleoside, nucleotide and nucleic acid metabolism
Process: regulation of transcription
Process: regulation of transcription, DNA-dependent
||
>>>
Process: regulation of cellular physiological process
Process: regulation of cellular metabolism
Process: regulation of nucleobase, nucleoside, nucleotide and nucleic acid metabolism
Process: regulation of transcription
Process: regulation of transcription, DNA-dependent
||
>>>
Process: regulation of biological process
Process: regulation of physiological process
Process: regulation of metabolism
Process: regulation of cellular metabolism
Process: regulation of nucleobase, nucleoside, nucleotide and nucleic acid metabolism
Process: regulation of transcription
Process: regulation of transcription, DNA-dependent
||
>>>
Process: regulation of cellular physiological process
Process: regulation of cellular metabolism
Process: regulation of nucleobase, nucleoside, nucleotide and nucleic acid metabolism
Process: regulation of transcription
Process: regulation of transcription, DNA-dependent
||
>>>
Process: regulation of cellular process
Process: regulation of cellular physiological process
Process: regulation of cellular metabolism
Process: regulation of nucleobase, nucleoside, nucleotide and nucleic acid metabolism
Process: regulation of transcription
Process: regulation of transcription, DNA-dependent
||
>>>
Component: cell
Component: intracellular
# Location:
Cytoplasm
# Blattner_Number:
b1770
# Gene_Sequence:
GTGGCGGCAAAAGACAGGATTCAGGCAATTAAGCAAATGGTTGCCAACGATAAAAAGGTGACAGTCTCAA
ATTTGAGTGGGATTTTTCAGGTAACCGAAGAAACCATTCGCCGCGATCTTGAGAAGCTGGAAGATGAAGG
CTTTTTGACCAGAACCTATGGTGGTGCTGTTTTAAATACAGCGATGTTGACGGAGAATATCCATTTTTAT
AAGCGCGCTTCATCGTTTTATGAAGAGAAGCAGCTTATTGCACGCAAGGCACTACCCTTTATCGACAATA
AAACCACCATGGCAGCCGATTCCAGTAGTACCGTAATGGAATTGCTCAAATTGTTACAGGACCGTAGTGG
CCTGACGTTGCTAACCAACTCGGCGGAAGCGATTCATGTTCTGGCTCAGTCAGAAATTAAAGTCGTTTCA
ACGGGTGGGGAACTAAACAAAAATACACTTTCACTGCAAGGAAGAATTACTAAAGAGATCATCAGGCGCT
ATCATGTCGATATCATGGTAATGAGTTGTAAAGGTCTTGATATTAACAGCGGCGCGCTGGACTCTAATGA
AGCGGAAGCTGAAATCAAAAAGACAATGATCCGTCAGGCGACAGAAGTTGCGTTATTGGTTGATCACTCT
AAGTTTGATCGCAAAGCTTTTGTCCAGTTAGCTGATTTTAGTCATATTAATTACATAATAACTGATAAAT
CACCGGGTGCAGAGTGGATAGCATTTTGCAAAGACAATAATATCCAGCTGGTGTGGTAA
# Upstream_100_bases:
TGTGATGAAAATCTGTGATTCAAACAGGTTATTTTGAAAGTAAACATCGGTTATGCGATAATCGCGCTAA
TGTGATGTAAAAAGATACAGGGGTGTAATC
# Blattner_No_Ontology:
Putative regulatory proteins
# Gene_Position:
1852120-1852878 (Counter Clockwise)
# Centisome_Position:
39.936
# Gene_Name:
ydjF
# GC_Content:
42.29%
# Metabolic_Importance:
Unknown
# Preceding_Gene:
ydjE
# Following_Gene:
ydjG
# Operon_Status:
No
# Operon_Components:
None
# Paralogues:
b3423 (glpR) 29; b2707 (srlR) 31; b2087/b2090 (gatR) 32; b2805 (fucR) 31; b3884 (yihW) 25; b3131 (agaR) 25; b1284 (yciT) 25; b2735 (ygbI) 25; b0840 (deoR) 21; b4300 (sgcR) 24; b4191 (yjfQ) 24;
# Copy Number:
10-20 Molecules/Cell
# RNA_Copy_No.:
Log phase (2max): 0.07
Stationary phase (2max): 0.07
Ref: Nature Biotech., 18, 1262-68, Dec. 2000 (PMID=11101804)
# Genbank_ID_(DNA):
G1788069
# Genbank_ID_(Protein):
AAC74840.1
# SWISS_PROT_(AC_&_ID):
$ YDJF_ECOLI (P77721)
# 2D_Gel_Image:
Not Available
# Other_Databases:
- ECOCYC: EG13482
- EcoGene: EG13482
- EMBL: U00096
- InterPro: IPR001034; IPR011991
- Pfam: PF00455; PF08220
- PIR: B64937
- PRINTS: PR00037
- PROSITE: PS00894
# Pfam_Domain/Function:
PF00455 Bacterial regulatory proteins, deoR family
# Homologues:
Not Available
# Similarity:
Contains 1 HTH deoR-type DNA-binding domain.
# EC_Number:
Not Available
# No._of_Amino_Acids:
252 (Translated Protein)
251 (Mature Protein)
# Molecular_Weight:
28262 28131
# Theoretical_pI:
7.06
# Theoretical_pI (Mature):
7.06
# Sequence:
// MAAKDRIQAIKQMVANDKKVTVSNLSGIFQVTEETIRRDLEKLEDEGFLTRTYGGAVLNT
// AMLTENIHFYKRASSFYEEKQLIARKALPFIDNKTTMAADSSSTVMELLKLLQDRSGLTL
// LTNSAEAIHVLAQSEIKVVSTGGELNKNTLSLQGRITKEIIRRYHVDIMVMSCKGLDINS
// GALDSNEAEAEIKKTMIRQATEVALLVDHSKFDRKAFVQLADFSHINYIITDKSPGAEWI
// AFCKDNNIQLVW
// /\
// AAKDRIQAIKQMVANDKKVTVSNLSGIFQVTEETIRRDLEKLEDEGFLTRTYGGAVLNTA
// MLTENIHFYKRASSFYEEKQLIARKALPFIDNKTTMAADSSSTVMELLKLLQDRSGLTLL
// TNSAEAIHVLAQSEIKVVSTGGELNKNTLSLQGRITKEIIRRYHVDIMVMSCKGLDINSG
// ALDSNEAEAEIKKTMIRQATEVALLVDHSKFDRKAFVQLADFSHINYIITDKSPGAEWIA
// FCKDNNIQLVW
# PROSITE_Motif:
HTH_DEOR_FAMILY; PATTERN. PS00894; Bacterial regulatory proteins, deoR family signature. R-x(3)-[LIVM]-x(3)-[LIVM]-x(16,17)-[STA]-x(2)-T-[LIVMA]-[RH]-[KRNA]-D-PA [LIVMF]. PDOC00696; //
# Important_Sites:
Not Available
# Transmembrane:
Not Available
# Cys/Met_Content:
0.8 %Cys (Translated Protein)
3.2 %Met (Translated Protein)
4.0 %Cys+Met (Translated Protein)
0.8 %Cys (Mature Protein)
2.8 %Met (Mature Protein)
3.6 %Cys+Met (Mature Protein)
# Secondary_Structure:
>YDJF_ECOLI (Translated Protein)
MAAKDRIQAIKQMVANDKKVTVSNLSGIFQVTEETIRRDLEKLEDEGFLTRTYGGAVLNT
CCCHHHHHHHHHHHHHCCCCCHHHHHHHHCCCHHHHHHHHHHHHHCCCEEEECCCEEECC
AMLTENIHFYKRASSFYEEKQLIARKALPFIDNKTTMAADSSSTVMELLKLLQDRSGLTL
CCCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCEEEECCCCCHHHHHHHHCCCCCEEE
LTNSAEAIHVLAQSEIKVVSTGGELNKNTLSLQGRITKEIIRRYHVDIMVMSCKGLDINS
EECCHHHHHHHHCCCCEEEECCCEEECCCCCCCCHHHHHHHCCCCCEEEEEEEEEECCCC
GALDSNEAEAEIKKTMIRQATEVALLVDHSKFDRKAFVQLADFSHINYIITDKSPGAEWI
CCCCCCHHHHHHHHHHHHHHCCEEEEEECCCCCCCCCEEECCHHHCCEEEECCCCCHHHH
AFCKDNNIQLVW
HHHHHCCCEEEC
/\
>YDJF_ECOLI (Mature Protein)
AAKDRIQAIKQMVANDKKVTVSNLSGIFQVTEETIRRDLEKLEDEGFLTRTYGGAVLNTA
CCHHHHHHHHHHHHHCCCCCHHHHHHHHCCCHHHHHHHHHHHHHCCCEEEECCCEEECCC
MLTENIHFYKRASSFYEEKQLIARKALPFIDNKTTMAADSSSTVMELLKLLQDRSGLTLL
CCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCEEEECCCCCHHHHHHHHCCCCCEEEE
TNSAEAIHVLAQSEIKVVSTGGELNKNTLSLQGRITKEIIRRYHVDIMVMSCKGLDINSG
ECCHHHHHHHHCCCCEEEECCCEEECCCCCCCCHHHHHHHCCCCCEEEEEEEEEECCCCC
ALDSNEAEAEIKKTMIRQATEVALLVDHSKFDRKAFVQLADFSHINYIITDKSPGAEWIA
CCCCCHHHHHHHHHHHHHHCCEEEEEECCCCCCCCCEEECCHHHCCEEEECCCCCHHHHH
FCKDNNIQLVW
HHHHCCCEEEC
# PDB_Accession:
& Not Available
# Resolution:
Not Available
# Structure_CLASS:
Alpha Beta
# Quaternary_Structure:
Not Available
# Interacting_Partners:
1) DNA,
# Cofactors:
Not Available
# Metals_Ions:
Not Available
# Kcat_Value_[1/min]:
Not Available
# Specific_Activity_[micromol/min/mg]:
Not Available
# Km_Value_[mM]:
Not Available
# Substrates:
DNA
# Products:
Not Available
# Specific_Reaction:
Protein + DNA = Protein-DNA
# General_Reaction:
Not Available
# Inhibitor:
Not Available
# Priority:
7.8
# Status:
Selected, Cloned, Expressed, Soluble
# Availability:
Laboratory of Structural & Genomic Information
#END_ECARDFILE
#BEGIN_ECARDFILE
# Entry_ID:
CC2428A.1
# Accession_No.:
UA0002428
# Name:
Hypothetical protein yjfY precursor
# Alternate_Names:
Not Available
# General_Function:
Not Available
# COG_Function:
Not Available
# COG_ID:
Not Available
# Specific_Function:
Not Available
# Riley_Gene_Function:
conserved hypothetical protein
# Riley_Cell_Function:
>>>
Not Available
# Gene_Ontology:
>>>
Function: Not Available
||
>>>
Process: Not Available
||
>>>
Component: Not Available
# Location:
Cytoplasm
# Blattner_Number:
b4199
# Gene_Sequence:
ATGTTCAGTCGTGTTTTAGCCCTTCTGGCTGTGCTTTTGCTAAGTGCAAATACATGGGCAGCCATTGAAA
TTAATAACCACCAGGCCAGAAATATGGACGATGTGCAAAGCTTAGGCGTGATTTATATCAATCATAATTT
CGCCACTGAAAGCGAAGCACGTCAGGCATTAAATGAAGAAACAGATGCGCAAGGCGCAACGTACTACCAC
GTAATTCTGATGCGGGAACCGGGGAGTAACGGCAATATGCACGCCAGCGCGGATATTTATCGCTAG
# Upstream_100_bases:
TCAGAAATGGTCACCATCAACTTCTTTATCATTGATTAAAATTAAATCAGAAGATCATCACAGAGGAGAG
CACACAAAGTCAGCCGTCGAGGAGGTATCT
# Blattner_No_Ontology:
Hypothetical, unclassified, unknown
# Gene_Position:
4422539-4422814 (Counter Clockwise)
# Centisome_Position:
95.326
# Gene_Name:
yjfY
# GC_Content:
46.01%
# Metabolic_Importance:
Unknown
# Preceding_Gene:
sgaE
# Following_Gene:
rpsF
# Operon_Status:
No
# Operon_Components:
None
# Paralogues:
None
# Copy Number:
Unknown
# RNA_Copy_No.:
Log phase (2max): 0.06
Stationary phase (2max): 0.12
Ref: Nature Biotech., 18, 1262-68, Dec. 2000 (PMID=11101804)
# Genbank_ID_(DNA):
G1790643
# Genbank_ID_(Protein):
AAC77156.1
# SWISS_PROT_(AC_&_ID):
$ YJFY_ECOLI (P0AF86)
# 2D_Gel_Image:
Not Available
# Other_Databases:
- ECOCYC: EG12499
- EcoGene: EG12499
- EMBL: U14003
- InterPro: IPR010854
- Pfam: PF07338
- PIR: S56424
# Pfam_Domain/Function:
PF07338 Protein of unknown function (DUF1471);
# Homologues:
Not Available
# Similarity:
To E.coli ydgH N-terminal region.
# EC_Number:
Not Available
# No._of_Amino_Acids:
91 (Translated Protein)
71 (Mature Protein)
# Molecular_Weight:
10149 7978
# Theoretical_pI:
4.95
# Theoretical_pI (Mature):
4.64
# Sequence:
// MFSRVLALLAVLLLSANTWAAIEINNHQARNMDDVQSLGVIYINHNFATESEARQALNEE
// TDAQGATYYHVILMREPGSNGNMHASADIYR
// /\
// AIEINNHQARNMDDVQSLGVIYINHNFATESEARQALNEETDAQGATYYHVILMREPGSN
// GNMHASADIYR
# PROSITE_Motif:
Not Available
# Important_Sites:
Signal Chain 1 20
# Transmembrane:
Not Available
# Cys/Met_Content:
0.0 %Cys (Translated Protein)
4.4 %Met (Translated Protein)
4.4 %Cys+Met (Translated Protein)
0.0 %Cys (Mature Protein)
4.2 %Met (Mature Protein)
4.2 %Cys+Met (Mature Protein)
# Secondary_Structure:
>YJFY_ECOLI (Translated Protein)
MFSRVLALLAVLLLSANTWAAIEINNHQARNMDDVQSLGVIYINHNFATESEARQALNEE
CHHHHHHHHHHHHCCCCCEEEEEECCCCCCCHHHHHCEEEEEECCCCCCHHHHHHHCCCC
TDAQGATYYHVILMREPGSNGNMHASADIYR
CCCCCCEEEEEEEEECCCCCCCCCCCCCCCC
/\
>YJFY_ECOLI (Mature Protein)
AIEINNHQARNMDDVQSLGVIYINHNFATESEARQALNEETDAQGATYYHVILMREPGSN
EEEECCCCCCCHHHHHCEEEEEECCCCCCHHHHHHHCCCCCCCCCCEEEEEEEEECCCCC
GNMHASADIYR
CCCCCCCCCCC
# PDB_Accession:
& Not Available
# Resolution:
Not Available
# Structure_CLASS:
Alpha Beta
# Quaternary_Structure:
Not Available
# Interacting_Partners:
Not Available
# Cofactors:
Not Available
# Metals_Ions:
Not Available
# Kcat_Value_[1/min]:
Not Available
# Specific_Activity_[micromol/min/mg]:
Not Available
# Km_Value_[mM]:
Not Available
# Substrates:
Not Available
# Products:
Not Available
# Specific_Reaction:
Not Available
# General_Reaction:
Not Available
# Inhibitor:
Not Available
# Priority:
9.4
# Status:
Selected, Cloned, Expressed
# Availability:
Northeast Structural Genomics Consortium
#END_ECARDFILE
#BEGIN_ECARDFILE
# Entry_ID:
CC0549A.1
# Accession_No.:
UA0000549
# Name:
PyrBI operon leader peptide
# Alternate_Names:
PyrBI operon attenuator
# General_Function:
Unknown
# COG_Function:
Not Available
# COG_ID:
Not Available
# Specific_Function:
Not Available
# Riley_Gene_Function:
pyrBI operon leader peptide
# Riley_Cell_Function:
>>>
Metabolism
Building block biosynthesis
Nucleotide
Pyrimidine biosynthesis
||
>>>
Location of gene products
Cytoplasm
# Gene_Ontology:
>>>
Function: Not Available
||
>>>
Process: physiological process
Process: metabolism
Process: biosynthesis
Process: cellular biosynthesis
Process: nucleobase biosynthesis
Process: pyrimidine base biosynthesis
||
>>>
Process: cellular metabolism
Process: nucleobase, nucleoside, nucleotide and nucleic acid metabolism
Process: nucleobase metabolism
Process: pyrimidine base metabolism
Process: pyrimidine base biosynthesis
||
>>>
Process: nucleobase biosynthesis
Process: pyrimidine base biosynthesis
||
>>>
Process: aromatic compound metabolism
Process: nucleobase metabolism
Process: pyrimidine base metabolism
Process: pyrimidine base biosynthesis
||
>>>
Process: nucleobase biosynthesis
Process: pyrimidine base biosynthesis
||
>>>
Process: cellular biosynthesis
Process: nucleobase biosynthesis
Process: pyrimidine base biosynthesis
||
>>>
Process: heterocycle metabolism
Process: nucleobase metabolism
Process: pyrimidine base metabolism
Process: pyrimidine base biosynthesis
||
>>>
Process: nucleobase biosynthesis
Process: pyrimidine base biosynthesis
||
>>>
Process: primary metabolism
Process: nucleobase, nucleoside, nucleotide and nucleic acid metabolism
Process: nucleobase metabolism
Process: pyrimidine base metabolism
Process: pyrimidine base biosynthesis
||
>>>
Process: nucleobase biosynthesis
Process: pyrimidine base biosynthesis
||
>>>
Process: cellular physiological process
Process: cellular metabolism
Process: nucleobase, nucleoside, nucleotide and nucleic acid metabolism
Process: nucleobase metabolism
Process: pyrimidine base metabolism
Process: pyrimidine base biosynthesis
||
>>>
Process: nucleobase biosynthesis
Process: pyrimidine base biosynthesis
||
>>>
Process: aromatic compound metabolism
Process: nucleobase metabolism
Process: pyrimidine base metabolism
Process: pyrimidine base biosynthesis
||
>>>
Process: nucleobase biosynthesis
Process: pyrimidine base biosynthesis
||
>>>
Process: cellular biosynthesis
Process: nucleobase biosynthesis
Process: pyrimidine base biosynthesis
||
>>>
Process: heterocycle metabolism
Process: nucleobase metabolism
Process: pyrimidine base metabolism
Process: pyrimidine base biosynthesis
||
>>>
Process: nucleobase biosynthesis
Process: pyrimidine base biosynthesis
||
>>>
Process: cellular process
Process: cellular physiological process
Process: cellular metabolism
Process: nucleobase, nucleoside, nucleotide and nucleic acid metabolism
Process: nucleobase metabolism
Process: pyrimidine base metabolism
Process: pyrimidine base biosynthesis
||
>>>
Process: nucleobase biosynthesis
Process: pyrimidine base biosynthesis
||
>>>
Process: aromatic compound metabolism
Process: nucleobase metabolism
Process: pyrimidine base metabolism
Process: pyrimidine base biosynthesis
||
>>>
Process: nucleobase biosynthesis
Process: pyrimidine base biosynthesis
||
>>>
Process: cellular biosynthesis
Process: nucleobase biosynthesis
Process: pyrimidine base biosynthesis
||
>>>
Process: heterocycle metabolism
Process: nucleobase metabolism
Process: pyrimidine base metabolism
Process: pyrimidine base biosynthesis
||
>>>
Process: nucleobase biosynthesis
Process: pyrimidine base biosynthesis
||
>>>
Component: Not Available
# Location:
Cytoplasm
# Blattner_Number:
b4246
# Gene_Sequence:
ATGGTTCAGTGTGTTCGACATTTTGTCTTACCGCGTCTGAAAAAAGACGCTGGCCTGCCGTTTTTCTTCC
CGTTGATCACCCATTCCCAGCCCCTCAATCGAGGGGCTTTTTTTTGCCCAGGCGTCAGGAGATAA
# Upstream_100_bases:
TTAATTCAAATAAACCGTTTGCGCTGACAAAATATTGCATCAAATGCTTGCGCCGCTTCTGACGATGAGT
ATAATGCCGGACAATTTGCCGGGAGGATGT
# Blattner_No_Ontology:
Nucleotide biosynthesis and metabolism
# Gene_Position:
4470422-4470556 (Counter Clockwise)
# Centisome_Position:
96.355
# Gene_Name:
pyrL
# GC_Content:
50.37%
# Metabolic_Importance:
Non_Essential
# Preceding_Gene:
pyrB
# Following_Gene:
yjgG
# Operon_Status:
Yes
# Operon_Components:
yjgF_pyrI_pyrB_pyrL Ref: RegulonDB http://kinich.cifn.unam.mx:8850/db/regulondb_cgi.query_simple?v_organism=ECK12&v_table=3&v_name=pyrL
# Paralogues:
None
# Copy Number:
Unknown
# RNA_Copy_No.:
Log phase (2max): 0.06
Stationary phase (2max): 0.05
Ref: Nature Biotech., 18, 1262-68, Dec. 2000 (PMID=11101804)
# Genbank_ID_(DNA):
G1790694
# Genbank_ID_(Protein):
AAC77203.1
# SWISS_PROT_(AC_&_ID):
$ LPPY_ECOLI (P0AD83)
# 2D_Gel_Image:
Not Available
# Other_Databases:
- ECOCYC: EG11279
- EcoGene: EG11279
- EMBL: M10743
- InterPro: IPR012602
- Pfam: PF08052
- PIR: A24926
# Pfam_Domain/Function:
None
# Homologues:
Not Available
# Similarity:
Not Available
# EC_Number:
Not Available
# No._of_Amino_Acids:
44 (Translated Protein)
15 (Mature Protein)
# Molecular_Weight:
5098 1718
# Theoretical_pI:
11.96
# Theoretical_pI (Mature):
12.20
# Sequence:
// MVQCVRHFVLPRLKKDAGLPFFFPLITHSQPLNRGAFFCPGVRR
// /\
// QPLNRGAFFCPGVRR
# PROSITE_Motif:
Not Available
# Important_Sites:
Not Available
# Transmembrane:
Not Available
# Cys/Met_Content:
4.5 %Cys (Translated Protein)
2.3 %Met (Translated Protein)
6.8 %Cys+Met (Translated Protein)
6.7 %Cys (Mature Protein)
0.0 %Met (Mature Protein)
6.7 %Cys+Met (Mature Protein)
# Secondary_Structure:
>LPPY_ECOLI (Translated Protein)
MVQCVRHFVLPRLKKDAGLPFFFPLITHSQPLNRGAFFCPGVRR
CCCHHHHHCCHHHHHCCCCCEEEEECCCCCCCCCCCCCCCCCCC
/\
>LPPY_ECOLI (Mature Protein)
VQCVRHFVLPRLKKDAGLPFFFPLITHSQPLNRGAFFCPGVRR
CCHHHHHCCHHHHHCCCCCEEEEECCCCCCCCCCCCCCCCCCC
# PDB_Accession:
& Not Available
# Resolution:
Not Available
# Structure_CLASS:
Alpha Beta
# Quaternary_Structure:
Not Available
# Interacting_Partners:
Unknown
# Cofactors:
Not Available
# Metals_Ions:
Not Available
# Kcat_Value_[1/min]:
Not Available
# Specific_Activity_[micromol/min/mg]:
Not Available
# Km_Value_[mM]:
Not Available
# Substrates:
Not Available
# Products:
Not Available
# Specific_Reaction:
Not Available
# General_Reaction:
Not Available
# Inhibitor:
Not Available
# Priority:
7.6
# Status:
Not Available
# Availability:
Not Available
#END_ECARDFILE
#BEGIN_ECARDFILE
# Entry_ID:
CC3148A.1
# Accession_No.:
UA0003148
# Name:
Hypothetical protein yceO
# Alternate_Names:
Not Available
# General_Function:
Not Available
# COG_Function:
Not Available
# COG_ID:
Not Available
# Specific_Function:
Not Available
# Riley_Gene_Function:
unknown CDS
# Riley_Cell_Function:
>>>
Not Available
# Gene_Ontology:
>>>
Function: Not Available
||
>>>
Process: Not Available
||
>>>
Component: Not Available
# Location:
Cytoplasm
# Blattner_Number:
b1058
# Gene_Sequence:
ATGAGGCCGTTTTTACAGGAGTATTTAATGCGTCGGCTGTTGCACTATCTCATCAATAATATTCGCGAGC
ATCTGATGCTTTATCTTTTTCTCTGGGGATTGTTGGCAATTATGGATCTGATCTATGTGTTTTATTTTTA
G
# Upstream_100_bases:
GGGAAATAGCTGCCGATTTTGCGCAAGACAAAAAAAGCGATTTTGATTTGACGCCATTCAGGCTTTCCCG
CTTCCAATAATCATCATTACGGCCTCCAGA
# Blattner_No_Ontology:
Hypothetical, unclassified, unknown
# Gene_Position:
1118530-1118670 (Counter Clockwise)
# Centisome_Position:
24.111
# Gene_Name:
yceO
# GC_Content:
37.59%
# Metabolic_Importance:
Unknown
# Preceding_Gene:
yceJ
# Following_Gene:
solA
# Operon_Status:
Yes
# Operon_Components:
yceO_solA Ref: RegulonDB http://kinich.cifn.unam.mx:8850/db/regulondb_cgi.query_simple?v_organism=ECK12&v_table=3&v_name=yceO
# Paralogues:
None
# Copy Number:
Unknown
# RNA_Copy_No.:
Log phase (2max): 162754.79
Stationary phase (2max): 8.07
Ref: Nature Biotech., 18, 1262-68, Dec. 2000 (PMID=11101804)
# Genbank_ID_(DNA):
G1787297
# Genbank_ID_(Protein):
AAC74142.1
# SWISS_PROT_(AC_&_ID):
$ YCEO_ECOLI (P64442)
# 2D_Gel_Image:
Not Available
# Other_Databases:
- ECOCYC: EG14334
- EcoGene: EG14334
- EMBL: U00096
- PIR: G64848
# Pfam_Domain/Function:
None
# Homologues:
Not Available
# Similarity:
Not Available
# EC_Number:
Not Available
# No._of_Amino_Acids:
46 (Translated Protein)
46 (Mature Protein)
# Molecular_Weight:
5897 5897
# Theoretical_pI:
8.94
# Theoretical_pI (Mature):
8.94
# Sequence:
// MRPFLQEYLMRRLLHYLINNIREHLMLYLFLWGLLAIMDLIYVFYF
// /\
// MRPFLQEYLMRRLLHYLINNIREHLMLYLFLWGLLAIMDLIYVFYF
# PROSITE_Motif:
Not Available
# Important_Sites:
Not Available
# Transmembrane:
Not Available
# Cys/Met_Content:
0.0 %Cys (Translated Protein)
8.7 %Met (Translated Protein)
8.7 %Cys+Met (Translated Protein)
0.0 %Cys (Mature Protein)
8.7 %Met (Mature Protein)
8.7 %Cys+Met (Mature Protein)
# Secondary_Structure:
>YCEO_ECOLI (Translated Protein)
MRPFLQEYLMRRLLHYLINNIREHLMLYLFLWGLLAIMDLIYVFYF
CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC
/\
>YCEO_ECOLI (Mature Protein)
RPFLQEYLMRRLLHYLINNIREHLMLYLFLWGLLAIMDLIYVFYF
CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC
# PDB_Accession:
& Not Available
# Resolution:
Not Available
# Structure_CLASS:
Mainly Alpha
# Quaternary_Structure:
Not Available
# Interacting_Partners:
Not Available
# Cofactors:
Not Available
# Metals_Ions:
Not Available
# Kcat_Value_[1/min]:
Not Available
# Specific_Activity_[micromol/min/mg]:
Not Available
# Km_Value_[mM]:
Not Available
# Substrates:
Not Available
# Products:
Not Available
# Specific_Reaction:
Not Available
# General_Reaction:
Not Available
# Inhibitor:
Not Available
# Priority:
9.4
# Status:
Not Available
# Availability:
Not Available
#END_ECARDFILE
#BEGIN_ECARDFILE
# Entry_ID:
CC2457A.1
# Accession_No.:
UA0002457
# Name:
Inner membrane protein yjgP
# Alternate_Names:
Not Available
# General_Function:
Not Available
# COG_Function:
General function prediction only (code R)
# COG_ID:
COG0795 Predicted permeases (Evalue = 0.0)
# Specific_Function:
Not Available
# Riley_Gene_Function:
putative transmembrane protein, transport; conserved inner membrane protein
# Riley_Cell_Function:
>>>
Transport
||
>>>
Cell structure
Membrane
# Gene_Ontology:
>>>
Function: molecular function unknown
||
>>>
Process: Not Available
||
>>>
Component: cell
Component: membrane
Component: intrinsic to membrane
Component: integral to membrane
# Location:
Integral Membrane Protein
# Blattner_Number:
b4261
# Gene_Sequence:
GTGATAATCATAAGATATCTGGTGCGGGAGACGCTCAAAAGCCAGCTGGCGATACTCTTCATCTTGCTTT
TGATCTTCTTCTGTCAAAAGTTAGTGAGGATCCTCGGCGCAGCGGTTGACGGCGATATTCCGGCGAATCT
GGTGCTCTCCCTTCTCGGGTTGGGCGTGCCGGAAATGGCGCAGCTTATCCTGCCATTAAGCCTGTTCCTC
GGGCTGCTGATGACGCTGGGCAAACTGTATACCGAAAGTGAAATTACGGTAATGCATGCCTGCGGCCTGA
GCAAAGCGGTTCTGGTGAAAGCGGCAATGATCCTTGCGGTATTCACGGCAATCGTAGCGGCGGTTAACGT
GATGTGGGCGGGACCGTGGTCATCGCGTCATCAGGATGAAGTGTTAGCAGAAGCGAAAGCGAACCCTGGC
ATGGCGGCGCTGGCGCAAGGGCAATTCCAGCAAGCGACTAATGGCAGCTCGGTGCTGTTCATCGAAAGCG
TTGACGGCAGCGATTTCAAAGATGTGTTCCTCGCGCAAATTCGACCAAAAGGTAATGCACGTCCTTCTGT
GGTGGTGGCCGATTCCGGACATTTAACCCAGCTGCGCGACGGCTCCCAGGTCGTCACTCTCAACCAGGGA
ACGCGCTTCGAAGGCACTGCATTGTTACGTGATTTCCGCATTACGGACTTCCAGGATTATCAGGCGATCA
TTGGTCACCAGGCGGTGGCGCTCGACCCGAACGATACCGACCAGATGGACATGCGCACATTGTGGAACAC
TGACACCGATCGTGCTCGCGCAGAACTGAACTGGCGTATCACGTTGGTATTCACCGTGTTTATGATGGCA
CTTATGGTCGTACCGCTGAGCGTGGTTAACCCACGTCAGGGACGCGTACTGTCGATGCTGCCAGCCATGC
TGCTGTATCTACTTTTCTTCCTGATCCAGACCTCCCTGAAATCGAACGGCGGTAAAGGTAAGCTGGACCC
GACGCTGTGGATGTGGACCGTTAACCTGATTTATCTGGCTTTAGCGATTGTTCTCAACCTTTGGGACACC
GTGCCGGTCCGCCGCCTGCGCGCCAGTTTTTCGCGTAAAGGAGCGGTGTGA
# Upstream_100_bases:
TCTTAGCGACGATTTCGACGACTCAAGAGAATAAATGACGTTTAAGCCATGAAACAAGCTAAAATCCTGC
AAAAGACGAGTTTTTACGGGCGTATTTAAA
# Blattner_No_Ontology:
Hypothetical, unclassified, unknown
# Gene_Position:
4484241-4485341 (Clockwise)
# Centisome_Position:
96.650
# Gene_Name:
yjgP
# GC_Content:
54.77%
# Metabolic_Importance:
Unknown
# Preceding_Gene:
pepA
# Following_Gene:
yjgQ
# Operon_Status:
Yes
# Operon_Components:
yjgP_yjgQ Ref: RegulonDB http://kinich.cifn.unam.mx:8850/db/regulondb_cgi.query_simple?v_organism=ECK12&v_table=3&v_name=yjgP
# Paralogues:
None
# Copy Number:
Unknown
# RNA_Copy_No.:
Log phase (2max): 0.23
Stationary phase (2max): 0.24
Ref: Nature Biotech., 18, 1262-68, Dec. 2000 (PMID=11101804)
# Genbank_ID_(DNA):
G1790712
# Genbank_ID_(Protein):
AAC77218.1
# SWISS_PROT_(AC_&_ID):
$ YJGP_ECOLI (P0AF98)
# 2D_Gel_Image:
Not Available
# Other_Databases:
- ECOCYC: EG12535
- EcoGene: EG12535
- EMBL: U14003
- InterPro: IPR005495
- Pfam: PF03739
- PIR: S56487
# Pfam_Domain/Function:
PF03739 Predicted permease YjgP/YjgQ family;
# Homologues:
Not Available
# Similarity:
To H.influenzae HI1704.
# EC_Number:
Not Available
# No._of_Amino_Acids:
366 (Translated Protein)
333 (Mature Protein)
# Molecular_Weight:
40358 36367
# Theoretical_pI:
9.42
# Theoretical_pI (Mature):
7.67
# Sequence:
// MIIIRYLVRETLKSQLAILFILLLIFFCQKLVRILGAAVDGDIPANLVLSLLGLGVPEMA
// QLILPLSLFLGLLMTLGKLYTESEITVMHACGLSKAVLVKAAMILAVFTAIVAAVNVMWA
// GPWSSRHQDEVLAEAKANPGMAALAQGQFQQATNGSSVLFIESVDGSDFKDVFLAQIRPK
// GNARPSVVVADSGHLTQLRDGSQVVTLNQGTRFEGTALLRDFRITDFQDYQAIIGHQAVA
// LDPNDTDQMDMRTLWNTDTDRARAELNWRITLVFTVFMMALMVVPLSVVNPRQGRVLSML
// PAMLLYLLFFLIQTSLKSNGGKGKLDPTLWMWTVNLIYLALAIVLNLWDTVPVRRLRASF
// SRKGAV
// /\
// ILGAAVDGDIPANLVLSLLGLGVPEMAQLILPLSLFLGLLMTLGKLYTESEITVMHACGL
// SKAVLVKAAMILAVFTAIVAAVNVMWAGPWSSRHQDEVLAEAKANPGMAALAQGQFQQAT
// NGSSVLFIESVDGSDFKDVFLAQIRPKGNARPSVVVADSGHLTQLRDGSQVVTLNQGTRF
// EGTALLRDFRITDFQDYQAIIGHQAVALDPNDTDQMDMRTLWNTDTDRARAELNWRITLV
// FTVFMMALMVVPLSVVNPRQGRVLSMLPAMLLYLLFFLIQTSLKSNGGKGKLDPTLWMWT
// VNLIYLALAIVLNLWDTVPVRRLRASFSRKGAV
# PROSITE_Motif:
Not Available
# Important_Sites:
Not Available
# Transmembrane:
Transmembrane 16 36 Potential
Transmembrane 54 74 Potential
Transmembrane 101 121 Potential
Transmembrane 270 290 Potential
Transmembrane 296 316 Potential
Transmembrane 328 348 Potential
# Cys/Met_Content:
0.5 %Cys (Translated Protein)
4.1 %Met (Translated Protein)
4.6 %Cys+Met (Translated Protein)
0.3 %Cys (Mature Protein)
4.2 %Met (Mature Protein)
4.5 %Cys+Met (Mature Protein)
# Secondary_Structure:
>YJGP_ECOLI (Translated Protein)
MIIIRYLVRETLKSQLAILFILLLIFFCQKLVRILGAAVDGDIPANLVLSLLGLGVPEMA
CEEEEEHHHHHHCCCHHHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHCCCHHHHHHH
AQLILPLSLFLGLLMTLGKLYTESEITVMHACGLSKAVLVKAAMILAVFTAIVAAVNVMW
HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHCCCHHHCCCHHHHHHHHHHHHHHHHHHH
WAGPWSSRHQDEVLAEAKANPGMAALAQGQFQQATNGSSVLFIESVDGSDFKDVFLAQIR
HHCCCHHHHHHHHHHHHHHCCCEEEECCCEEECCCCCCEEEEEEEECCCEEEEEEEEEEC
RPKGNARPSVVVADSGHLTQLRDGSQVVTLNQGTRFEGTALLRDFRITDFQDYQAIIGHQ
CCCCCCCCEEEEECCCEEEEECCCCEEEEECCCEEEECCHHHHCCCCCCHHHHCCCCCCC
QAVALDPNDTDQMDMRTLWNTDTDRARAELNWRITLVFTVFMMALMVVPLSVVNPRQGRV
CHHHCCCCCCCCCCHHHHHCCCCHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHCCCCCCH
VLSMLPAMLLYLLFFLIQTSLKSNGGKGKLDPTLWMWTVNLIYLALAIVLNLWDTVPVRR
HHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCHHHHH
RLRASFSRKGAV
HHHHHHCCCCCC
/\
>YJGP_ECOLI (Mature Protein)
IIIRYLVRETLKSQLAILFILLLIFFCQKLVRILGAAVDGDIPANLVLSLLGLGVPEMAQ
EEEEEHHHHHHCCCHHHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHCCCHHHHHHHH
QLILPLSLFLGLLMTLGKLYTESEITVMHACGLSKAVLVKAAMILAVFTAIVAAVNVMWA
HHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHCCCHHHCCCHHHHHHHHHHHHHHHHHHHH
AGPWSSRHQDEVLAEAKANPGMAALAQGQFQQATNGSSVLFIESVDGSDFKDVFLAQIRP
HCCCHHHHHHHHHHHHHHCCCEEEECCCEEECCCCCCEEEEEEEECCCEEEEEEEEEECC
PKGNARPSVVVADSGHLTQLRDGSQVVTLNQGTRFEGTALLRDFRITDFQDYQAIIGHQA
CCCCCCCEEEEECCCEEEEECCCCEEEEECCCEEEECCHHHHCCCCCCHHHHCCCCCCCH
AVALDPNDTDQMDMRTLWNTDTDRARAELNWRITLVFTVFMMALMVVPLSVVNPRQGRVL
HHHCCCCCCCCCCHHHHHCCCCHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHCCCCCCHH
LSMLPAMLLYLLFFLIQTSLKSNGGKGKLDPTLWMWTVNLIYLALAIVLNLWDTVPVRRL
HHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCHHHHHH
LRASFSRKGAV
HHHHHCCCCCC
# PDB_Accession:
& Not Available
# Resolution:
Not Available
# Structure_CLASS:
Alpha Beta
# Quaternary_Structure:
Not Available
# Interacting_Partners:
Not Available
# Cofactors:
Not Available
# Metals_Ions:
Not Available
# Kcat_Value_[1/min]:
Not Available
# Specific_Activity_[micromol/min/mg]:
Not Available
# Km_Value_[mM]:
Not Available
# Substrates:
Not Available
# Products:
Not Available
# Specific_Reaction:
Not Available
# General_Reaction:
Not Available
# Inhibitor:
Not Available
# Priority:
6.4
# Status:
Not Available
# Availability:
Not Available
#END_ECARDFILE
#BEGIN_ECARDFILE
# Entry_ID:
CC2890A.1
# Accession_No.:
UA0002890
# Name:
Protein ygiW precursor
# Alternate_Names:
Not Available
# General_Function:
Cell envelope
# COG_Function:
Function unknown (code S)
# COG_ID:
COG3111 Uncharacterized conserved protein (Evalue = 1e-70)
# Specific_Function:
Not Available
# Riley_Gene_Function:
conserved hypothetical protein
# Riley_Cell_Function:
>>>
Not Available
# Gene_Ontology:
>>>
Function: Not Available
||
>>>
Process: Not Available
||
>>>
Component: Not Available
# Location:
Periplasmic Protein
# Blattner_Number:
b3024
# Gene_Sequence:
ATGAAAAAATTCGCAGCAGTAATCGCAGTAATGGCCCTGTGCAGCGCACCGGTGATGGCAGCAGAGCAGG
GCGGTTTTTCTGGCCCATCGGCAACGCAAAGTCAGGCCGGAGGATTCCAGGGGCCGAACGGCAGCGTAAC
GACTGTAGAAAGCGCAAAATCCCTGCGTGACGACACCTGGGTAACCCTGCGCGGCAATATCGTTGAACGC
ATCTCTGACGATCTCTACGTGTTCAAAGATGCCAGCGGTACTATCAATGTTGATATCGACCACAAACGCT
GGAACGGCGTGACGGTGACGCCGAAAGATACGGTTGAGATTCAGGGTGAAGTCGATAAAGACTGGAATTC
TGTTGAAATTGACGTCAAACAGATCCGCAAAGTAAATCCGTAA
# Upstream_100_bases:
GCGCTCTGTACAGCACTAAATTTTATTTTTTTCCCTTAAGAAGTTGTTAAGGACTATCTTGTTAAATGCT
CGGAAACAGACATTAAAGGGAGTAATAAAC
# Blattner_No_Ontology:
Hypothetical, unclassified, unknown
# Gene_Position:
3167306-3167698 (Counter Clockwise)
# Centisome_Position:
68.274
# Gene_Name:
ygiW
# GC_Content:
51.91%
# Metabolic_Importance:
Non_Essential
# Preceding_Gene:
ygiV
# Following_Gene:
qseB
# Operon_Status:
No
# Operon_Components:
None
# Paralogues:
b1536 (ydeI) 31;
# Copy Number:
Unknown
# RNA_Copy_No.:
Log phase (2max): 0.1
Stationary phase (2max): 1.61
Ref: Nature Biotech., 18, 1262-68, Dec. 2000 (PMID=11101804)
# Genbank_ID_(DNA):
G1789401
# Genbank_ID_(Protein):
AAC76060.1
# SWISS_PROT_(AC_&_ID):
$ YGIW_ECOLI (P0ADU5)
# 2D_Gel_Image:
Not Available
# Other_Databases:
- ECOCYC: EG13025
- EcoGene: EG13025
- EMBL: U28377
- InterPro: IPR005220
- Pfam: PF04076
- PIR: F65089
# Pfam_Domain/Function:
PF04076 Domain unknown function (DUF388);
# Homologues:
Not Available
# Similarity:
To H.influenzae HI1709.
# EC_Number:
Not Available
# No._of_Amino_Acids:
130 (Translated Protein)
110 (Mature Protein)
# Molecular_Weight:
14011 11976
# Theoretical_pI:
4.86
# Theoretical_pI (Mature):
4.50
# Sequence:
// MKKFAAVIAVMALCSAPVMAAEQGGFSGPSATQSQAGGFQGPNGSVTTVESAKSLRDDTW
// VTLRGNIVERISDDLYVFKDASGTINVDIDHKRWNGVTVTPKDTVEIQGEVDKDWNSVEI
// DVKQIRKVNP
// /\
// AEQGGFSGPSATQSQAGGFQGPNGSVTTVESAKSLRDDTWVTLRGNIVERISDDLYVFKD
// ASGTINVDIDHKRWNGVTVTPKDTVEIQGEVDKDWNSVEIDVKQIRKVNP
# PROSITE_Motif:
Not Available
# Important_Sites:
Signal Chain 1 20
# Transmembrane:
Not Available
# Cys/Met_Content:
0.8 %Cys (Translated Protein)
2.3 %Met (Translated Protein)
3.1 %Cys+Met (Translated Protein)
0.0 %Cys (Mature Protein)
0.0 %Met (Mature Protein)
0.0 %Cys+Met (Mature Protein)
# Secondary_Structure:
>YGIW_ECOLI (Translated Protein)
MKKFAAVIAVMALCSAPVMAAEQGGFSGPSATQSQAGGFQGPNGSVTTVESAKSLRDDTW
CCHHHHHHHHHHHHCCHHHHHHCCCCCCCCCCCCCCCCEECCCCHHHHHHHHHHCCCCCE
VTLRGNIVERISDDLYVFKDASGTINVDIDHKRWNGVTVTPKDTVEIQGEVDKDWNSVEI
EEEEEEEEEEECCCEEEEECCCCEEEEEECCCCCCCCCCCCCCEEEEEEEEECCCCCEEE
DVKQIRKVNP
EEEEEEECCC
/\
>YGIW_ECOLI (Mature Protein)
AEQGGFSGPSATQSQAGGFQGPNGSVTTVESAKSLRDDTWVTLRGNIVERISDDLYVFKD
HHCCCCCCCCCCCCCCCCEECCCCHHHHHHHHHHCCCCCEEEEEEEEEEEECCCEEEEEC
ASGTINVDIDHKRWNGVTVTPKDTVEIQGEVDKDWNSVEIDVKQIRKVNP
CCCEEEEEECCCCCCCCCCCCCCEEEEEEEEECCCCCEEEEEEEEEECCC
# PDB_Accession:
& Not Available
# Resolution:
Not Available
# Structure_CLASS:
Alpha Beta
# Quaternary_Structure:
Not Available
# Interacting_Partners:
Not Available
# Cofactors:
Not Available
# Metals_Ions:
Not Available
# Kcat_Value_[1/min]:
Not Available
# Specific_Activity_[micromol/min/mg]:
Not Available
# Km_Value_[mM]:
Not Available
# Substrates:
Not Available
# Products:
Not Available
# Specific_Reaction:
Not Available
# General_Reaction:
Not Available
# Inhibitor:
Not Available
# Priority:
9
# Status:
Not Available
# Availability:
Not Available
#END_ECARDFILE
#BEGIN_ECARDFILE
# Entry_ID:
CC1559A.1
# Accession_No.:
UA0001559
# Name:
L-serine dehydratase 2
# Alternate_Names:
L-serine deaminase 2; SDH 2; L-SD2
# General_Function:
Energy metabolism
# COG_Function:
Amino acid transport and metabolism (code E)
# COG_ID:
COG1760 L-serine deaminase (Evalue = 0.0)
# Specific_Function:
Deaminates also threonine, particularly when it is present in high concentration.
# Riley_Gene_Function:
L-serine deaminase 2
# Riley_Cell_Function:
>>>
Metabolism
Carbon compound utilization
Fatty acids (fatty acid oxidation)
||
>>>
Metabolism
Carbon compound utilization
Amino acids
L-serine degradation
||
>>>
Metabolism
Carbon compound utilization
Amino acids
Threonine catabolism
# Gene_Ontology:
>>>
Function: catalytic activity
Function: lyase activity
Function: carbon-nitrogen lyase activity
Function: ammonia-lyase activity
Function: L-serine ammonia-lyase activity
||
>>>
Process: physiological process
Process: metabolism
Process: biosynthesis
Process: cellular biosynthesis
Process: macromolecule biosynthesis
Process: carbohydrate biosynthesis
Process: monosaccharide biosynthesis
Process: hexose biosynthesis
Process: gluconeogenesis
||
>>>
Process: alcohol biosynthesis
Process: monosaccharide biosynthesis
Process: hexose biosynthesis
Process: gluconeogenesis
||
>>>
Process: macromolecule metabolism
Process: carbohydrate metabolism
Process: cellular carbohydrate metabolism
Process: monosaccharide metabolism
Process: hexose metabolism
Process: glucose metabolism
Process: gluconeogenesis
||
>>>
Process: hexose biosynthesis
Process: gluconeogenesis
||
>>>
Process: monosaccharide biosynthesis
Process: hexose biosynthesis
Process: gluconeogenesis
||
>>>
Process: main pathways of carbohydrate metabolism
Process: gluconeogenesis
||
>>>
Process: carbohydrate biosynthesis
Process: monosaccharide biosynthesis
Process: hexose biosynthesis
Process: gluconeogenesis
||
>>>
Process: macromolecule biosynthesis
Process: carbohydrate biosynthesis
Process: monosaccharide biosynthesis
Process: hexose biosynthesis
Process: gluconeogenesis
||
>>>
Process: cellular metabolism
Process: alcohol metabolism
Process: monosaccharide metabolism
Process: hexose metabolism
Process: glucose metabolism
Process: gluconeogenesis
||
>>>
Process: hexose biosynthesis
Process: gluconeogenesis
||
>>>
Process: monosaccharide biosynthesis
Process: hexose biosynthesis
Process: gluconeogenesis
||
>>>
Process: alcohol biosynthesis
Process: monosaccharide biosynthesis
Process: hexose biosynthesis
Process: gluconeogenesis
||
>>>
Process: organic acid metabolism
Process: carboxylic acid metabolism
Process: pyruvate metabolism
Process: gluconeogenesis
||
>>>
Process: generation of precursor metabolites and energy
Process: energy derivation by oxidation of organic compounds
Process: main pathways of carbohydrate metabolism
Process: gluconeogenesis
||
>>>
Process: cellular biosynthesis
Process: macromolecule biosynthesis
Process: carbohydrate biosynthesis
Process: monosaccharide biosynthesis
Process: hexose biosynthesis
Process: gluconeogenesis
||
>>>
Process: alcohol biosynthesis
Process: monosaccharide biosynthesis
Process: hexose biosynthesis
Process: gluconeogenesis
||
>>>
Process: primary metabolism
Process: carbohydrate metabolism
Process: cellular carbohydrate metabolism
Process: monosaccharide metabolism
Process: hexose metabolism
Process: glucose metabolism
Process: gluconeogenesis
||
>>>
Process: hexose biosynthesis
Process: gluconeogenesis
||
>>>
Process: monosaccharide biosynthesis
Process: hexose biosynthesis
Process: gluconeogenesis
||
>>>
Process: main pathways of carbohydrate metabolism
Process: gluconeogenesis
||
>>>
Process: carbohydrate biosynthesis
Process: monosaccharide biosynthesis
Process: hexose biosynthesis
Process: gluconeogenesis
||
>>>
Process: cellular physiological process
Process: cellular metabolism
Process: alcohol metabolism
Process: monosaccharide metabolism
Process: hexose metabolism
Process: glucose metabolism
Process: gluconeogenesis
||
>>>
Process: hexose biosynthesis
Process: gluconeogenesis
||
>>>
Process: monosaccharide biosynthesis
Process: hexose biosynthesis
Process: gluconeogenesis
||
>>>
Process: alcohol biosynthesis
Process: monosaccharide biosynthesis
Process: hexose biosynthesis
Process: gluconeogenesis
||
>>>
Process: organic acid metabolism
Process: carboxylic acid metabolism
Process: pyruvate metabolism
Process: gluconeogenesis
||
>>>
Process: generation of precursor metabolites and energy
Process: energy derivation by oxidation of organic compounds
Process: main pathways of carbohydrate metabolism
Process: gluconeogenesis
||
>>>
Process: cellular biosynthesis
Process: macromolecule biosynthesis
Process: carbohydrate biosynthesis
Process: monosaccharide biosynthesis
Process: hexose biosynthesis
Process: gluconeogenesis
||
>>>
Process: alcohol biosynthesis
Process: monosaccharide biosynthesis
Process: hexose biosynthesis
Process: gluconeogenesis
||
>>>
Process: cellular process
Process: cellular physiological process
Process: cellular metabolism
Process: alcohol metabolism
Process: monosaccharide metabolism
Process: hexose metabolism
Process: glucose metabolism
Process: gluconeogenesis
||
>>>
Process: hexose biosynthesis
Process: gluconeogenesis
||
>>>
Process: monosaccharide biosynthesis
Process: hexose biosynthesis
Process: gluconeogenesis
||
>>>
Process: alcohol biosynthesis
Process: monosaccharide biosynthesis
Process: hexose biosynthesis
Process: gluconeogenesis
||
>>>
Process: organic acid metabolism
Process: carboxylic acid metabolism
Process: pyruvate metabolism
Process: gluconeogenesis
||
>>>
Process: generation of precursor metabolites and energy
Process: energy derivation by oxidation of organic compounds
Process: main pathways of carbohydrate metabolism
Process: gluconeogenesis
||
>>>
Process: cellular biosynthesis
Process: macromolecule biosynthesis
Process: carbohydrate biosynthesis
Process: monosaccharide biosynthesis
Process: hexose biosynthesis
Process: gluconeogenesis
||
>>>
Process: alcohol biosynthesis
Process: monosaccharide biosynthesis
Process: hexose biosynthesis
Process: gluconeogenesis
||
>>>
Component: Not Available
# Location:
Cytoplasm
# Blattner_Number:
b2797
# Gene_Sequence:
ATGATTAGCGTATTCGATATTTTCAAAATCGGCATTGGCCCTTCCAGTTCTCATACCGTTGGACCAATGA
AAGCGGGTAAACAATTTACCGACGATCTGATTGCCCGTAACCTGCTTAAAGACGTGACCCGCGTGGTGGT
TGACGTGTACGGCTCGCTCTCTCTGACCGGTAAAGGCCACCACACTGATATCGCCATTATTATGGGCCTG
GCGGGTAACCTGCCGGATACCGTGGATATCGATTCCATCCCCAGTTTTATTCAGGATGTGAATACTCATG
GTCGCCTGATGCTGGCAAACGGTCAGCATGAAGTGGAGTTCCCGGTTGATCAGTGCATGAACTTCCACGC
CGACAACCTTTCTCTGCATGAAAACGGTATGCGCATTACCGCGCTGGCGGGCGATAAAGTCGTTTACAGC
CAGACTTACTACTCTATTGGCGGTGGCTTTATCGTTGATGAAGAGCATTTTGGCCAGCAGGATAGCGCAC
CGGTTGAAGTTCCTTATCCGTACAGTTCAGCAGCCGATCTGCAAAAACATTGTCAGGAAACCGGGCTGTC
ACTCTCTGGCCTGATGATGAAAAACGAGCTGGCGCTGCACAGCAAAGAAGAGCTGGAACAGCACCTGGCG
AACGTCTGGGAAGTCATGCGCGGCGGTATTGAGCGCGGTATTTCCACCGAAGGCGTGTTGCCTGGCAAAC
TGCGCGTTCCACGCCGTGCTGCGGCACTACGCCGGATGCTGGTCAGCCAGGATAAAACCACCACTGACCC
GATGGCGGTTGTTGACTGGATCAACATGTTTGCACTGGCAGTGAACGAAGAGAACGCTGCTGGCGGTCGC
GTGGTGACTGCGCCGACTAACGGTGCGTGCGGGATTATCCCGGCAGTTCTGGCGTACTACGACAAGTTTA
TCCGCGAAGTGAACGCTAACTCACTGGCTCGTTACCTGCTGGTAGCCAGCGCCATTGGTTCTCTTTATAA
GATGAACGCGTCGATTTCTGGTGCTGAAGTGGGTTGCCAGGGTGAAGTTGGCGTGGCGTGCTCAATGGCG
GCGGCTGGTCTGGCAGAACTATTAGGCGCAAGCCCGGCGCAGGTGTGCATCGCGGCGGAAATCGCCATGG
AGCACAACCTCGGTCTGACGTGTGACCCGGTCGCCGGACAGGTACAGGTGCCATGCATCGAGCGTAACGC
CATTGCGGCAGTAAAAGCGGTGAACGCCGCACGTATGGCGCTGCGCCGTACCAGCGAGCCGCGCGTCTGC
CTCGATAAAGTTATCGAAACCATGTACGAAACAGGTAAAGATATGAACGCCAAGTACCGCGAAACCTCTC
GCGGCGGCCTGGCAATGAAGATCGTTGCCTGCGATTAA
# Upstream_100_bases:
TCTGATTGCAATCTCCGCAATCTTCTACTCTCTGTTCAGCTAAGTCCTTTCGCGCCGCTTTCGGGCGGCG
CTTCCTCCGTTTTAACGCGATGTATTTCCT
# Blattner_No_Ontology:
Amino acid biosynthesis and metabolism
# Gene_Position:
2927598-2928965 (Clockwise)
# Centisome_Position:
63.099
# Gene_Name:
sdaB
# GC_Content:
54.97%
# Metabolic_Importance:
Non_Essential
# Preceding_Gene:
sdaC
# Following_Gene:
xni
# Operon_Status:
Yes
# Operon_Components:
sdaC_sdaB Ref: Center for Information Biology and DNA Data Bank of Japan, National Institute of Genetics http://www.cib.nig.ac.jp/dda/taitoh/ecoli.operon.html
# Paralogues:
b1814 (sdaA) 77; b3111/b3112 (tdcG) 72;
# Copy Number:
Unknown
# RNA_Copy_No.:
Log phase (2max): 0.26
Stationary phase (2max): 0.09
Ref: Nature Biotech., 18, 1262-68, Dec. 2000 (PMID=11101804)
# Genbank_ID_(DNA):
G1789161
# Genbank_ID_(Protein):
AAC75839.1
# SWISS_PROT_(AC_&_ID):
$ SDHM_ECOLI (P30744)
# 2D_Gel_Image:
Not Available
# Other_Databases:
- ECOCYC: EG11623
- EcoGene: EG11623
- EMBL: L07763
- InterPro: IPR004644; IPR005130; IPR005131
- Pfam: PF03313; PF03315
- PIR: A65062
# Pfam_Domain/Function:
PF03313 Serine dehydratase alpha chain; PF03315 Serine dehydratase beta chain;
# Homologues:
Not Available
# Similarity:
Belongs to the iron-sulfur dependent L-serine dehydratase family.
# EC_Number:
4.3.1.17
# No._of_Amino_Acids:
455 (Translated Protein)
455 (Mature Protein)
# Molecular_Weight:
48754 48754
# Theoretical_pI:
5.59
# Theoretical_pI (Mature):
5.59
# Sequence:
// MISVFDIFKIGIGPSSSHTVGPMKAGKQFTDDLIARNLLKDVTRVVVDVYGSLSLTGKGH
// HTDIAIIMGLAGNLPDTVDIDSIPSFIQDVNTHGRLMLANGQHEVEFPVDQCMNFHADNL
// SLHENGMRITALAGDKVVYSQTYYSIGGGFIVDEEHFGQQDSAPVEVPYPYSSAADLQKH
// CQETGLSLSGLMMKNELALHSKEELEQHLANVWEVMRGGIERGISTEGVLPGKLRVPRRA
// AALRRMLVSQDKTTTDPMAVVDWINMFALAVNEENAAGGRVVTAPTNGACGIIPAVLAYY
// DKFIREVNANSLARYLLVASAIGSLYKMNASISGAEVGCQGEVGVACSMAAAGLAELLGA
// SPAQVCIAAEIAMEHNLGLTCDPVAGQVQVPCIERNAIAAVKAVNAARMALRRTSEPRVC
// LDKVIETMYETGKDMNAKYRETSRGGLAMKIVACD
// /\
// MISVFDIFKIGIGPSSSHTVGPMKAGKQFTDDLIARNLLKDVTRVVVDVYGSLSLTGKGH
// HTDIAIIMGLAGNLPDTVDIDSIPSFIQDVNTHGRLMLANGQHEVEFPVDQCMNFHADNL
// SLHENGMRITALAGDKVVYSQTYYSIGGGFIVDEEHFGQQDSAPVEVPYPYSSAADLQKH
// CQETGLSLSGLMMKNELALHSKEELEQHLANVWEVMRGGIERGISTEGVLPGKLRVPRRA
// AALRRMLVSQDKTTTDPMAVVDWINMFALAVNEENAAGGRVVTAPTNGACGIIPAVLAYY
// DKFIREVNANSLARYLLVASAIGSLYKMNASISGAEVGCQGEVGVACSMAAAGLAELLGA
// SPAQVCIAAEIAMEHNLGLTCDPVAGQVQVPCIERNAIAAVKAVNAARMALRRTSEPRVC
// LDKVIETMYETGKDMNAKYRETSRGGLAMKIVACD
# PROSITE_Motif:
Not Available
# Important_Sites:
Not Available
# Transmembrane:
Not Available
# Cys/Met_Content:
2.2 %Cys (Translated Protein)
4.2 %Met (Translated Protein)
6.4 %Cys+Met (Translated Protein)
2.2 %Cys (Mature Protein)
4.2 %Met (Mature Protein)
6.4 %Cys+Met (Mature Protein)
# Secondary_Structure:
>SDHM_ECOLI (Translated Protein)
MISVFDIFKIGIGPSSSHTVGPMKAGKQFTDDLIARNLLKDVTRVVVDVYGSLSLTGKGH
CEEEEECCCCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCCCCCEEEEEEEEEHHHCCCCC
HTDIAIIMGLAGNLPDTVDIDSIPSFIQDVNTHGRLMLANGQHEVEFPVDQCMNFHADNL
CCHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHCCHHHHCCEEEEEECCCCCCEECCCCC
SLHENGMRITALAGDKVVYSQTYYSIGGGFIVDEEHFGQQDSAPVEVPYPYSSAADLQKH
CCCCCCEEEEEECCCCEEEEEEEEEECCCEEECHHHCCCCCCCCCCCCCCCCCHHHHHHH
CQETGLSLSGLMMKNELALHSKEELEQHLANVWEVMRGGIERGISTEGVLPGKLRVPRRA
HHHCCCCHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCHHH
AALRRMLVSQDKTTTDPMAVVDWINMFALAVNEENAAGGRVVTAPTNGACGIIPAVLAYY
HHHHHHHHCCCCCCCCHHHHHHHHHHHHEEECHHHCCCCEEEECCCCCHHHHHHHHHHHH
DKFIREVNANSLARYLLVASAIGSLYKMNASISGAEVGCQGEVGVACSMAAAGLAELLGA
HHHCCCCCHHHHHHHHHHHHHHHHHHHHCCCHHHCCCCCCCHHHHHHHHHHHHHHHHHCC
SPAQVCIAAEIAMEHNLGLTCDPVAGQVQVPCIERNAIAAVKAVNAARMALRRTSEPRVC
CHHHHHHHHHHHHHHCCCCEECCCCCCEEECEEEHHHHHHHHHHHHHHHHHCCCCCCCCC
LDKVIETMYETGKDMNAKYRETSRGGLAMKIVACD
HHHHHHHHHHHHHHHHHHHHHHCCCCEEEEEEECC
/\
>SDHM_ECOLI (Mature Protein)
ISVFDIFKIGIGPSSSHTVGPMKAGKQFTDDLIARNLLKDVTRVVVDVYGSLSLTGKGHH
EEEEECCCCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCCCCCEEEEEEEEEHHHCCCCCC
TDIAIIMGLAGNLPDTVDIDSIPSFIQDVNTHGRLMLANGQHEVEFPVDQCMNFHADNLS
CHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHCCHHHHCCEEEEEECCCCCCEECCCCCC
LHENGMRITALAGDKVVYSQTYYSIGGGFIVDEEHFGQQDSAPVEVPYPYSSAADLQKHC
CCCCCEEEEEECCCCEEEEEEEEEECCCEEECHHHCCCCCCCCCCCCCCCCCHHHHHHHH
QETGLSLSGLMMKNELALHSKEELEQHLANVWEVMRGGIERGISTEGVLPGKLRVPRRAA
HHCCCCHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCHHHH
ALRRMLVSQDKTTTDPMAVVDWINMFALAVNEENAAGGRVVTAPTNGACGIIPAVLAYYD
HHHHHHHCCCCCCCCHHHHHHHHHHHHEEECHHHCCCCEEEECCCCCHHHHHHHHHHHHH
KFIREVNANSLARYLLVASAIGSLYKMNASISGAEVGCQGEVGVACSMAAAGLAELLGAS
HHCCCCCHHHHHHHHHHHHHHHHHHHHCCCHHHCCCCCCCHHHHHHHHHHHHHHHHHCCC
PAQVCIAAEIAMEHNLGLTCDPVAGQVQVPCIERNAIAAVKAVNAARMALRRTSEPRVCL
HHHHHHHHHHHHHHCCCCEECCCCCCEEECEEEHHHHHHHHHHHHHHHHHCCCCCCCCCH
DKVIETMYETGKDMNAKYRETSRGGLAMKIVACD
HHHHHHHHHHHHHHHHHHHHHCCCCEEEEEEECC
# PDB_Accession:
& Not Available
# Resolution:
Not Available
# Structure_CLASS:
Alpha Beta
# Quaternary_Structure:
Not Available
# Interacting_Partners:
Not Available
# Cofactors:
Binds 1 4Fe-4S cluster (Probable).
# Metals_Ions:
--Fe2+
# Kcat_Value_[1/min]:
Not Available
# Specific_Activity_[micromol/min/mg]:
Not Available
# Km_Value_[mM]:
130 {L-Thr}
100 {L-Ser}
75 {L-Ser}
70 {L-Ser}
# Substrates:
@SERI01txt*L-Serine! + L-threonine + H2O
# Products:
pyruvate + 2-oxobutanoate + H2O + NH3
# Specific_Reaction:
@SERI01.txt*L-Serine! + H2O = pyruvate + NH3 + H2O
L-threonine + H2O = 2-oxobutanoate + H2O + NH3
# General_Reaction:
Elimination of NH alphabeta-position of amino acid C-N bond; Cleavage C-O bond
# Inhibitor:
--1,10-Phenanthroline --AlK(SO4)2 --CuCl2 --D-His --D-Ser --Ethanolamine --Imidazole --L-His --ZnSO4
# Priority:
6.2
# Status:
Selected
# Availability:
Montreal-Kingston Bacterial Structural Genomics Initiative
#END_ECARDFILE
#BEGIN_ECARDFILE
# Entry_ID:
CC4265A.1
# Accession_No.:
UA0004265
# Name:
Hypothetical protein ybdF
# Alternate_Names:
Not Available
# General_Function:
Not Available
# COG_Function:
Function unknown (code S)
# COG_ID:
COG2315 Uncharacterized protein conserved in bacteria (Evalue = 4e-68)
# Specific_Function:
Not Available
# Riley_Gene_Function:
conserved hypothetical protein
# Riley_Cell_Function:
>>>
Not Available
# Gene_Ontology:
>>>
Function: Not Available
||
>>>
Process: Not Available
||
>>>
Component: Not Available
# Location:
Cytoplasm
# Blattner_Number:
b0579
# Gene_Sequence:
ATGGATAAGCAATCACTGCACGAAACGGCGAAACGCCTGGCCCTTGAGTTACCCTTTGTCGAGCTTTGCT
GGCCTTTTGGCCCGGAGTTCGATGTTTTTAAAATTGGCGGCAAGATTTTTATGCTGTCGTCGGAGCTACG
CGGCGTCCCCTTTATCAATCTGAAGTCCGATCCACAAAAATCCCTGTTAAATCAGCAAATATACCCAAGC
ATTAAGCCAGGGTATCACATGAATAAAAAGCACTGGATTTCAGTGTATCCCGGCGAAGAAATCTCCGAAG
CGTTACTTCGCGATCTGATCAACGATTCGTGGAATCTGGTGGTTGATGGTCTGGCTAAACGCGATCAAAA
AAGAGTGCGTCCAGGCTAA
# Upstream_100_bases:
TTTATCTGGCGACGCTGGTTCTCGCTGGCGGATTAAACGTCGATTATCGCCGTACTTCGCGGCATACTTT
GCTTATTCTCCTTCGCCTAAAGGAACGTTT
# Blattner_No_Ontology:
Hypothetical, unclassified, unknown
# Gene_Position:
604741-605109 (Counter Clockwise)
# Centisome_Position:
13.042
# Gene_Name:
ybdF
# GC_Content:
47.15%
# Metabolic_Importance:
Non_Essential
# Preceding_Gene:
nfnB
# Following_Gene:
ybdJ
# Operon_Status:
No
# Operon_Components:
None
# Paralogues:
b4057 (yjbR) 26;
# Copy Number:
Unknown
# RNA_Copy_No.:
Log phase (2max): 0.13
Stationary phase (2max): 0.1
Ref: Nature Biotech., 18, 1262-68, Dec. 2000 (PMID=11101804)
# Genbank_ID_(DNA):
G1786793
# Genbank_ID_(Protein):
AAC73680.1
# SWISS_PROT_(AC_&_ID):
$ YBDF_ECOLI (P0AAT2)
# 2D_Gel_Image:
Not Available
# Other_Databases:
- ECOCYC: EG12619
- EcoGene: EG12619
- EMBL: AP009048
- InterPro: IPR007351
- Pfam: PF04237
- PIR: A64791
# Pfam_Domain/Function:
PF04237 Protein of unknown function (DUF419);
# Homologues:
Not Available
# Similarity:
Not Available
# EC_Number:
Not Available
# No._of_Amino_Acids:
122 (Translated Protein)
122 (Mature Protein)
# Molecular_Weight:
14050 14050
# Theoretical_pI:
9.07
# Theoretical_pI (Mature):
9.07
# Sequence:
// MDKQSLHETAKRLALELPFVELCWPFGPEFDVFKIGGKIFMLSSELRGVPFINLKSDPQK
// SLLNQQIYPSIKPGYHMNKKHWISVYPGEEISEALLRDLINDSWNLVVDGLAKRDQKRVR
// PG
// /\
// MDKQSLHETAKRLALELPFVELCWPFGPEFDVFKIGGKIFMLSSELRGVPFINLKSDPQK
// SLLNQQIYPSIKPGYHMNKKHWISVYPGEEISEALLRDLINDSWNLVVDGLAKRDQKRVR
// PG
# PROSITE_Motif:
Not Available
# Important_Sites:
Not Available
# Transmembrane:
Not Available
# Cys/Met_Content:
0.8 %Cys (Translated Protein)
2.5 %Met (Translated Protein)
3.3 %Cys+Met (Translated Protein)
0.8 %Cys (Mature Protein)
2.5 %Met (Mature Protein)
3.3 %Cys+Met (Mature Protein)
# Secondary_Structure:
>YBDF_ECOLI (Translated Protein)
MDKQSLHETAKRLALELPFVELCWPFGPEFDVFKIGGKIFMLSSELRGVPFINLKSDPQK
CCCCCCHHHHHHHHHHCCCEEEECCCCCCCEEEEECCEEEEEEEECCCCCEEEEEECHHH
SLLNQQIYPSIKPGYHMNKKHWISVYPGEEISEALLRDLINDSWNLVVDGLAKRDQKRVR
HHHHHHHCCCCCCHHHCCCEEEEEEECCCCCCHHHHHHHHHHHHHHHHHHCCHHHHHHCC
PG
CC
/\
>YBDF_ECOLI (Mature Protein)
DKQSLHETAKRLALELPFVELCWPFGPEFDVFKIGGKIFMLSSELRGVPFINLKSDPQKS
CCCCCHHHHHHHHHHCCCEEEECCCCCCCEEEEECCEEEEEEEECCCCCEEEEEECHHHH
LLNQQIYPSIKPGYHMNKKHWISVYPGEEISEALLRDLINDSWNLVVDGLAKRDQKRVRP
HHHHHHCCCCCCHHHCCCEEEEEEECCCCCCHHHHHHHHHHHHHHHHHHCCHHHHHHCCC
G
C
# PDB_Accession:
& Not Available
# Resolution:
Not Available
# Structure_CLASS:
Alpha Beta
# Quaternary_Structure:
Not Available
# Interacting_Partners:
Not Available
# Cofactors:
Not Available
# Metals_Ions:
Not Available
# Kcat_Value_[1/min]:
Not Available
# Specific_Activity_[micromol/min/mg]:
Not Available
# Km_Value_[mM]:
Not Available
# Substrates:
Not Available
# Products:
Not Available
# Specific_Reaction:
Not Available
# General_Reaction:
Not Available
# Inhibitor:
Not Available
# Priority:
9
# Status:
Selected, Cloned, Expressed, Soluble, Purified
# Availability:
Montreal-Kingston Bacterial Structural Genomics Initiative
#END_ECARDFILE
#BEGIN_ECARDFILE
# Entry_ID:
CC3254A.1
# Accession_No.:
UA0003254
# Name:
Hypothetical protein yncJ precursor
# Alternate_Names:
Not Available
# General_Function:
Not Available
# COG_Function:
Not Available
# COG_ID:
Not Available
# Specific_Function:
Not Available
# Riley_Gene_Function:
unknown CDS
# Riley_Cell_Function:
>>>
Not Available
# Gene_Ontology:
>>>
Function: Not Available
||
>>>
Process: Not Available
||
>>>
Component: Not Available
# Location:
Cytoplasm
# Blattner_Number:
b1436
# Gene_Sequence:
ATGTTTACGAAGGCGTTATCGGTTGTCTTATTAACGTGTGCTCTGTTTTCAGGACAACTCATGGCAGGGC
ACAAAGGACATGAATTTGTGTGGGTAAAGAATGTGGATCATCAGCTGCGTCATGAAGCGGACAGCGATGA
ATTGCGTGCTGTGGCGGAAGAGTCGGCGGAAGGTTTGCGCGAGCATTTTTACTGGCAAAAATCGCGCAAA
CCAGAAGCGGGACAACGTTGA
# Upstream_100_bases:
GAAGATTCCAGAATTTCTTTGCGCTAATTTGCAAAACTGAATAATAACCTCAAGAAACGATCGGCATCAT
AGCGGCAAAAGGTAAGAAAAAGGTGGCAGG
# Blattner_No_Ontology:
Hypothetical, unclassified, unknown
# Gene_Position:
1506858-1507088 (Counter Clockwise)
# Centisome_Position:
32.483
# Gene_Name:
yncJ
# GC_Content:
48.92%
# Metabolic_Importance:
Non_Essential
# Preceding_Gene:
ydcP
# Following_Gene:
b1437
# Operon_Status:
No
# Operon_Components:
None
# Paralogues:
None
# Copy Number:
Unknown
# RNA_Copy_No.:
Log phase (2max): 0.58
Stationary phase (2max): 0.28
Ref: Nature Biotech., 18, 1262-68, Dec. 2000 (PMID=11101804)
# Genbank_ID_(DNA):
G1787707
# Genbank_ID_(Protein):
AAC74518.1
# SWISS_PROT_(AC_&_ID):
$ YNCJ_ECOLI (P64459)
# 2D_Gel_Image:
Not Available
# Other_Databases:
- ECOCYC: EG14300
- EcoGene: EG14300
- EMBL: U00096
- PIR: G64895
# Pfam_Domain/Function:
None
# Homologues:
Not Available
# Similarity:
Not Available
# EC_Number:
Not Available
# No._of_Amino_Acids:
76 (Translated Protein)
54 (Mature Protein)
# Molecular_Weight:
8709 6382
# Theoretical_pI:
7.07
# Theoretical_pI (Mature):
6.68
# Sequence:
// MFTKALSVVLLTCALFSGQLMAGHKGHEFVWVKNVDHQLRHEADSDELRAVAEESAEGLR
// EHFYWQKSRKPEAGQR
// /\
// GHKGHEFVWVKNVDHQLRHEADSDELRAVAEESAEGLREHFYWQKSRKPEAGQR
# PROSITE_Motif:
Not Available
# Important_Sites:
Signal Chain 1 22
# Transmembrane:
Not Available
# Cys/Met_Content:
1.3 %Cys (Translated Protein)
2.6 %Met (Translated Protein)
3.9 %Cys+Met (Translated Protein)
0.0 %Cys (Mature Protein)
0.0 %Met (Mature Protein)
0.0 %Cys+Met (Mature Protein)
# Secondary_Structure:
>YNCJ_ECOLI (Translated Protein)
MFTKALSVVLLTCALFSGQLMAGHKGHEFVWVKNVDHQLRHEADSDELRAVAEESAEGLR
CCCCEEEEEHHHHHHHCCCHHCCCCCCEEEEEECCCCEECCCCCHHHHHHHHHHHHHHHH
EHFYWQKSRKPEAGQR
HHCCHHHCCCCCCCCC
/\
>YNCJ_ECOLI (Mature Protein)
GHKGHEFVWVKNVDHQLRHEADSDELRAVAEESAEGLREHFYWQKSRKPEAGQR
CCCCCEEEEEECCCCEECCCCCHHHHHHHHHHHHHHHHHHCCHHHCCCCCCCCC
# PDB_Accession:
& Not Available
# Resolution:
Not Available
# Structure_CLASS:
Alpha Beta
# Quaternary_Structure:
Not Available
# Interacting_Partners:
Not Available
# Cofactors:
Not Available
# Metals_Ions:
Not Available
# Kcat_Value_[1/min]:
Not Available
# Specific_Activity_[micromol/min/mg]:
Not Available
# Km_Value_[mM]:
Not Available
# Substrates:
Not Available
# Products:
Not Available
# Specific_Reaction:
Not Available
# General_Reaction:
Not Available
# Inhibitor:
Not Available
# Priority:
9
# Status:
Not Available
# Availability:
Not Available
#END_ECARDFILE
#BEGIN_ECARDFILE
# Entry_ID:
CC3572A.1
# Accession_No.:
UA0003572
# Name:
Probable pyridine nucleotide-disulfide oxidoreductase ykgC
# Alternate_Names:
Not Available
# General_Function:
Energy metabolism; FAD/NAD(P)-binding domain; FAD/NAD-linked reductases, dimerisation (C-terminal) domain
# COG_Function:
Energy production and conversion (code C)
# COG_ID:
COG1249 Pyruvate/2-oxoglutarate dehydrogenase complex, dihydrolipoamide dehydrogenase (E3) component, and related enzymes (Evalue = 0.0)
# Specific_Function:
Genes ykgC is regulated by transcriptional attenuation.
# Riley_Gene_Function:
putative oxidoreductase, FAD/NAD(P)-binding and dimerization domain
# Riley_Cell_Function:
>>>
Not Available
# Gene_Ontology:
>>>
Function: catalytic activity
Function: oxidoreductase activity
||
>>>
Function: catalytic activity
Function: oxidoreductase activity
||
>>>
Function: catalytic activity
Function: oxidoreductase activity
||
>>>
Function: catalytic activity
Function: oxidoreductase activity
Function: disulfide oxidoreductase activity
||
>>>
Process: physiological process
Process: metabolism
Process: cellular metabolism
Process: generation of precursor metabolites and energy
Process: electron transport
||
>>>
Process: cellular physiological process
Process: transport
Process: electron transport
||
>>>
Process: cellular metabolism
Process: generation of precursor metabolites and energy
Process: electron transport
||
>>>
Process: localization
Process: establishment of localization
Process: transport
Process: electron transport
||
>>>
Process: cellular process
Process: cellular physiological process
Process: transport
Process: electron transport
||
>>>
Process: cellular metabolism
Process: generation of precursor metabolites and energy
Process: electron transport
Process: physiological process
Process: metabolism
Process: cellular metabolism
Process: generation of precursor metabolites and energy
Process: electron transport
||
>>>
Process: cellular physiological process
Process: transport
Process: electron transport
||
>>>
Process: cellular metabolism
Process: generation of precursor metabolites and energy
Process: electron transport
||
>>>
Process: localization
Process: establishment of localization
Process: transport
Process: electron transport
||
>>>
Process: cellular process
Process: cellular physiological process
Process: transport
Process: electron transport
||
>>>
Process: cellular metabolism
Process: generation of precursor metabolites and energy
Process: electron transport
Process: physiological process
Process: metabolism
Process: cellular metabolism
Process: generation of precursor metabolites and energy
Process: electron transport
||
>>>
Process: cellular physiological process
Process: transport
Process: electron transport
||
>>>
Process: cellular metabolism
Process: generation of precursor metabolites and energy
Process: electron transport
||
>>>
Process: localization
Process: establishment of localization
Process: transport
Process: electron transport
||
>>>
Process: cellular process
Process: cellular physiological process
Process: transport
Process: electron transport
||
>>>
Process: cellular metabolism
Process: generation of precursor metabolites and energy
Process: electron transport
Process: physiological process
Process: metabolism
Process: cellular metabolism
Process: generation of precursor metabolites and energy
Process: electron transport
||
>>>
Process: cellular physiological process
Process: transport
Process: electron transport
||
>>>
Process: cellular metabolism
Process: generation of precursor metabolites and energy
Process: electron transport
||
>>>
Process: localization
Process: establishment of localization
Process: transport
Process: electron transport
||
>>>
Process: cellular process
Process: cellular physiological process
Process: transport
Process: electron transport
||
>>>
Process: cellular metabolism
Process: generation of precursor metabolites and energy
Process: electron transport
||
>>>
Component: cell
Component: intracellular
Component: cytoplasm
# Location:
Cytoplasm
# Blattner_Number:
b0304
# Gene_Sequence:
ATGAATAAATATCAGGCAGTGATTATTGGTTTTGGCAAGGCTGGAAAAACATTAGCCGTCACGCTGGCAA
AAGCAGGTTGGCGAGTGGCTCTCATCGAACAATCAAATGCAATGTATGGCGGGACCTGTATTAATATCGG
CTGCATCCCAACCAAAACATTGGTTCATGACGCACAGCAGCACACAGATTTTGTCCGTGCCATACAGCGT
AAAAATGAAGTGGTTAATTTTTTACGTAATAAGAATTTTCATAATCTTGCGGATATGCCCAATATCGACG
TGATCGACGGCCAGGCGGAGTTTATCAATAATCATAGCCTGCGTGTTCATCGGCCTGAGGGAAATCTGGA
AATTCATGGCGAGAAAATTTTTATTAATACCGGTGCACAAACCGTGGTTCCGCCAATTCCTGGAATTACC
ACCACGCCAGGAGTATATGACAGCACCGGATTACTTAATCTAAAAGAATTGCCTGGGCATTTAGGTATTT
TGGGCGGCGGATATATTGGCGTTGAGTTCGCCTCTATGTTCGCTAATTTTGGCAGCAAGGTAACCATTTT
AGAAGCAGCTTCGCTGTTTTTGCCTCGGGAAGATCGGGATATTGCTGATAATATCGCGACGATTTTACGC
GATCAGGGCGTCGATATTATCCTCAATGCCCATGTGGAGCGAATCAGTCACCATGAAAATCAAGTGCAAG
TGCATAGCGAGCACGCCCAACTGGCGGTGGATGCACTGTTAATAGCTTCCGGTCGTCAACCGGCTACCGC
TTCGTTACATCCAGAAAATGCCGGTATCGCAGTAAACGAGCGCGGGGCAATTGTCGTTGACAAGCGATTA
CATACCACCGCAGACAATATTTGGGCGATGGGAGATGTTACCGGCGGGCTGCAATTTACTTACATATCAC
TGGATGATTACCGCATTGTACGTGATGAGTTACTGGGTGAAGGCAAACGTAGTACTGATGATCGGAAAAA
TGTGCCTTATTCCGTATTTATGACACCGCCCCTGTCCAGGGTTGGTATGACAGAAGAACAAGCCAGAGAG
AGTGGTGCTGATATTCAGGTGGTGACATTGCCTGTAGCTGCAATTCCGCGTGCCAGAGTGATGAATGATA
CTCGTGGGGTATTAAAAGCGATTGTTGATAATAAAACCCAACGTATGTTAGGGGCATCACTGCTGTGTGT
TGACTCCCACGAGATGATCAATATAGTGAAAATGGTGATGGATGCCGGGCTGCCTTATAGCATATTACGC
GATCAGATATTTACTCATCCGTCGATGAGCGAATCACTCAATGATCTATTTTCATTAGTCAAATAA
# Upstream_100_bases:
GACGATAAGACAAAATATCAAGCGTTGTGAAGAAATGTTATTTGCTCTTTTGCGTCTATAGTCATGATGT
CAAATGAACGCGTTTCGACAGGAAATCATC
# Blattner_No_Ontology:
Cell processes incl. adaptation, protection
# Gene_Position:
317900-319225 (Counter Clockwise)
# Centisome_Position:
6.880
# Gene_Name:
ykgC
# GC_Content:
45.55%
# Metabolic_Importance:
Non_Essential
# Preceding_Gene:
ykgI
# Following_Gene:
ykgD
# Operon_Status:
No
# Operon_Components:
None
# Paralogues:
b0116 (lpdA) 28; b3962 (sthA) 27; b3500 (gor) 28; b0606 (ahpF) 23;
# Copy Number:
Unknown
# RNA_Copy_No.:
Log phase (2max): 3.71
Stationary phase (2max): 0.17
Ref: Nature Biotech., 18, 1262-68, Dec. 2000 (PMID=11101804)
# Genbank_ID_(DNA):
G1786495
# Genbank_ID_(Protein):
AAC73407.1
# SWISS_PROT_(AC_&_ID):
$ YKGC_ECOLI (P77212)
# 2D_Gel_Image:
Not Available
# Other_Databases:
- ECOCYC: EG13580
- EcoGene: EG13580
- EMBL: U00096
- InterPro: IPR013027; IPR000815; IPR001100; IPR004099; IPR012999; IPR001327
- Pfam: PF00070; PF07992; PF02852
- PRINTS: PR00368
- PROSITE: PS00076
# Pfam_Domain/Function:
PF00070 Pyridine nucleotide-disulphide oxidoreductase; PF02852 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain;
# Homologues:
Organism=Homo sapiens, GI4557525, Length=509, Positives=45%, Blast Score=160
Organism=Homo sapiens, GI10835189, Length=479, Positives=42%, Blast Score=146
Organism=Homo sapiens, GI51492609, Length=752, Positives=39%, Blast Score=87.0
Organism=Homo sapiens, GI22035672, Length=524, Positives=40%, Blast Score=85.9
Organism=Homo sapiens, GI22035670, Length=494, Positives=40%, Blast Score=85.9
Organism=Homo sapiens, GI33519432, Length=499, Positives=39%, Blast Score=84.0
Organism=Homo sapiens, GI33519430, Length=499, Positives=39%, Blast Score=84.0
Organism=Homo sapiens, GI33519428, Length=499, Positives=39%, Blast Score=84.0
Organism=Homo sapiens, GI33519426, Length=499, Positives=39%, Blast Score=84.0
Organism=Caenorhabditis elegans, GI32565766, Length=495, Positives=45%, Blast Score=155
Organism=Caenorhabditis elegans, GI17552638, Length=473, Positives=41%, Blast Score=110
Organism=Caenorhabditis elegans, GI17557007, Length=503, Positives=40%, Blast Score=97.1
Organism=Saccharomyces cerevisiae, GI14318501, Length=499, Positives=47%, Blast Score=174
Organism=Saccharomyces cerevisiae, GI6325166, Length=483, Positives=42%, Blast Score=112
Organism=Saccharomyces cerevisiae, GI6325240, Length=499, Positives=41%, Blast Score=92.4
Organism=Mus musculus, GI31982856, Length=509, Positives=45%, Blast Score=155
Organism=Mus musculus, GI34328489, Length=500, Positives=42%, Blast Score=138
Organism=Mus musculus, GI23346613, Length=613, Positives=40%, Blast Score=90.9
Organism=Mus musculus, GI7305603, Length=528, Positives=41%, Blast Score=89.0
Organism=Mus musculus, GI13569841, Length=499, Positives=38%, Blast Score=83.2
Organism=Drosophila melanogaster, GI21358499, Length=504, Positives=44%, Blast Score=154
Organism=Drosophila melanogaster, GI24640553, Length=508, Positives=42%, Blast Score=94.4
Organism=Drosophila melanogaster, GI24640551, Length=596, Positives=42%, Blast Score=94.4
Organism=Drosophila melanogaster, GI24640549, Length=491, Positives=42%, Blast Score=94.4
Organism=Drosophila melanogaster, GI17737741, Length=516, Positives=41%, Blast Score=81.6
# Similarity:
Belongs to the class-I pyridine nucleotide-disulfide oxidoreductase family.
# EC_Number:
Not Available
# No._of_Amino_Acids:
441 (Translated Protein)
441 (Mature Protein)
# Molecular_Weight:
48245 48245
# Theoretical_pI:
6.51
# Theoretical_pI (Mature):
6.51
# Sequence:
// MNKYQAVIIGFGKAGKTLAVTLAKAGWRVALIEQSNAMYGGTCINIGCIPTKTLVHDAQQ
// HTDFVRAIQRKNEVVNFLRNKNFHNLADMPNIDVIDGQAEFINNHSLRVHRPEGNLEIHG
// EKIFINTGAQTVVPPIPGITTTPGVYDSTGLLNLKELPGHLGILGGGYIGVEFASMFANF
// GSKVTILEAASLFLPREDRDIADNIATILRDQGVDIILNAHVERISHHENQVQVHSEHAQ
// LAVDALLIASGRQPATASLHPENAGIAVNERGAIVVDKRLHTTADNIWAMGDVTGGLQFT
// YISLDDYRIVRDELLGEGKRSTDDRKNVPYSVFMTPPLSRVGMTEEQARESGADIQVVTL
// PVAAIPRARVMNDTRGVLKAIVDNKTQRMLGASLLCVDSHEMINIVKMVMDAGLPYSILR
// DQIFTHPSMSESLNDLFSLVK
// /\
// MNKYQAVIIGFGKAGKTLAVTLAKAGWRVALIEQSNAMYGGTCINIGCIPTKTLVHDAQQ
// HTDFVRAIQRKNEVVNFLRNKNFHNLADMPNIDVIDGQAEFINNHSLRVHRPEGNLEIHG
// EKIFINTGAQTVVPPIPGITTTPGVYDSTGLLNLKELPGHLGILGGGYIGVEFASMFANF
// GSKVTILEAASLFLPREDRDIADNIATILRDQGVDIILNAHVERISHHENQVQVHSEHAQ
// LAVDALLIASGRQPATASLHPENAGIAVNERGAIVVDKRLHTTADNIWAMGDVTGGLQFT
// YISLDDYRIVRDELLGEGKRSTDDRKNVPYSVFMTPPLSRVGMTEEQARESGADIQVVTL
// PVAAIPRARVMNDTRGVLKAIVDNKTQRMLGASLLCVDSHEMINIVKMVMDAGLPYSILR
// DQIFTHPSMSESLNDLFSLVK
# PROSITE_Motif:
PYRIDINE_REDOX_1; PATTERN. PS00076; Pyridine nucleotide-disulphide oxidoreductases class-I active site. G-G-x-C-[LIVA]-x(2)-G-C-[LIVM]-P. PDOC00073; //
# Important_Sites:
Active_Site 435 435 By Similarity
# Transmembrane:
Not Available
# Cys/Met_Content:
0.7 %Cys (Translated Protein)
2.9 %Met (Translated Protein)
3.6 %Cys+Met (Translated Protein)
0.7 %Cys (Mature Protein)
2.9 %Met (Mature Protein)
3.6 %Cys+Met (Mature Protein)
# Secondary_Structure_(PDB):
SQKFDVIVIGAGPGGYVAAIKSAQLGLKTALIEKYKGKEGKTALGGTCLNV
CCCEEEEEECCCHHHHHHHHHHHHHCEEEEEEEEECCCCCCEEECCCCCCC
GCIPSKALLDSSYKFHEAHESFKLHGISTGEVAIDVPTMIARKDQIVRNLT
CCHHHHHHHHHHHHHHHHHCCCCCCCEEECCCEEEHHHHHHHHHHHHHHHH
GGVASLIKANGVTLFEGHGKLLAGKKVEVTAADGSSQVLDTENVILASGSK
HHHHHHHHHHCEEEEEEEEEEECCCEEEEECCCCEEEEEEEEEEEEECCEE
PVEIPPAPVDQDVIVDSTGALDFQNVPGKLGVIGAGVIGLELGSVWARLGA
EECCCCCCCCCCEEEECHHHHCCCCCCEEEEEECCHHHHHHHHHHHHHHCE
EVTVLEAMDKFLPAVDEQVAKEAQKILTKQGLKILLGARVTGTEVKNKQVT
EEEEEEEEECCCCCCCHHHHHHHHHHHHHHCEEEEECEEEEEEEECCCEEE
VKFVDAEGEKSQAFDKLIVAVGRRPVTTDLLAADSGVTLDERGFIYVDDYC
EEEEECCEEEEECEEEEEEECEEEEECCCCCCCCCCEEECCCCEEECCCCC
ATSVPGVYAIGDVVRGAMLAHKASEEGVVVAERIAGHKAQMNYDLIPAVIY
CCCCCCEEEECCCCCCCCCHHHHHHHHHHHHHHHHCCCCCCCCCCCEEEEC
THPEIAGVGKTEQALKAEGVAINVGVFPFAASGRAMAANDTAGFVKVIADA
CCEEEEEECCCHHHHHHHCEEEEEEEECCCCHHHHHHHCCCCCEEEEEEEE
KTDRVLGVHVIGPSAAELVQQGAIAMEFGTSAEDLGMMVFAHPALSEALHE
CCCEEEEEEEECCCHHHHHHHHHHHHHHCCCHHHHHHCCCCCCCCCHHHHH
AALAVSGHAIHVA
HHHHHHCCCCCCC
# PDB_Accession:
& Model Based on 3LAD (59-449)
# Resolution:
Not Available
# Structure_CLASS:
Alpha Beta
# Quaternary_Structure:
Not Available
# Interacting_Partners:
1) ahpF (hypothetical), 2) dsbE (hypothetical), 3) nirD (hypothetical), 4) trxA (hypothetical),
# Cofactors:
Binds 1 FAD per subunit (By similarity).
# Metals_Ions:
Not Available
# Kcat_Value_[1/min]:
Not Available
# Specific_Activity_[micromol/min/mg]:
Not Available
# Km_Value_[mM]:
Not Available
# Substrates:
Not Available
# Products:
Not Available
# Specific_Reaction:
Not Available
# General_Reaction:
Not Available
# Inhibitor:
Not Available
# Priority:
1.0
# Status:
Selected, Cloned, Expressed, Soluble, Purified, Crystallized
# Availability:
Marseilles Structural Genomics Program
#END_ECARDFILE
#BEGIN_ECARDFILE
# Entry_ID:
CC1309A.1
# Accession_No.:
UA0001309
# Name:
Ribose operon repressor
# Alternate_Names:
Not Available
# General_Function:
Regulatory functions; Member of GalR/LacI; lambda repressor-like DNA-binding domains; Periplasmic binding protein-like I
# COG_Function:
Transcription (code K)
# COG_ID:
COG1609 Transcriptional regulators (Evalue = 0.0)
# Specific_Function:
Transcriptional repressor for the ribose rbsDACBK operon. RbsR binds to a region of perfect dyad symmetry spanning the rbs operon transcriptional start site. The affinity for the rbs operator is reduced by addition of ribose, consistent with ribose being the inducer of the operon.
# Riley_Gene_Function:
transcriptional repressor for ribose metabolism (GalR/LacI family)
# Riley_Cell_Function:
>>>
Metabolism
Carbon compound utilization
Carbohydrates/Carbon compounds
||
>>>
Information transfer
RNA related
Transcription related
||
>>>
Regulation
Type of regulation
Transcriptional level
Repressor
||
>>>
Regulation
Genetic unit regulated
Operon (regulation of one operon)
||
>>>
Location of gene products
Cytoplasm
# Gene_Ontology:
>>>
Function: binding
Function: nucleic acid binding
Function: DNA binding
Function: transcription factor activity
||
>>>
Function: transcription regulator activity
Function: transcription factor activity
||
>>>
Process: physiological process
Process: metabolism
Process: regulation of metabolism
Process: regulation of cellular metabolism
Process: regulation of nucleobase, nucleoside, nucleotide and nucleic acid metabolism
Process: regulation of transcription
Process: regulation of transcription, DNA-dependent
||
>>>
Process: cellular metabolism
Process: nucleobase, nucleoside, nucleotide and nucleic acid metabolism
Process: transcription
Process: transcription, DNA-dependent
Process: regulation of transcription, DNA-dependent
||
>>>
Process: regulation of transcription
Process: regulation of transcription, DNA-dependent
||
>>>
Process: regulation of nucleobase, nucleoside, nucleotide and nucleic acid metabolism
Process: regulation of transcription
Process: regulation of transcription, DNA-dependent
||
>>>
Process: regulation of cellular metabolism
Process: regulation of nucleobase, nucleoside, nucleotide and nucleic acid metabolism
Process: regulation of transcription
Process: regulation of transcription, DNA-dependent
||
>>>
Process: primary metabolism
Process: nucleobase, nucleoside, nucleotide and nucleic acid metabolism
Process: transcription
Process: transcription, DNA-dependent
Process: regulation of transcription, DNA-dependent
||
>>>
Process: regulation of transcription
Process: regulation of transcription, DNA-dependent
||
>>>
Process: regulation of nucleobase, nucleoside, nucleotide and nucleic acid metabolism
Process: regulation of transcription
Process: regulation of transcription, DNA-dependent
||
>>>
Process: regulation of physiological process
Process: regulation of metabolism
Process: regulation of cellular metabolism
Process: regulation of nucleobase, nucleoside, nucleotide and nucleic acid metabolism
Process: regulation of transcription
Process: regulation of transcription, DNA-dependent
||
>>>
Process: regulation of cellular physiological process
Process: regulation of cellular metabolism
Process: regulation of nucleobase, nucleoside, nucleotide and nucleic acid metabolism
Process: regulation of transcription
Process: regulation of transcription, DNA-dependent
||
>>>
Process: cellular physiological process
Process: cellular metabolism
Process: nucleobase, nucleoside, nucleotide and nucleic acid metabolism
Process: transcription
Process: transcription, DNA-dependent
Process: regulation of transcription, DNA-dependent
||
>>>
Process: regulation of transcription
Process: regulation of transcription, DNA-dependent
||
>>>
Process: regulation of nucleobase, nucleoside, nucleotide and nucleic acid metabolism
Process: regulation of transcription
Process: regulation of transcription, DNA-dependent
||
>>>
Process: regulation of cellular metabolism
Process: regulation of nucleobase, nucleoside, nucleotide and nucleic acid metabolism
Process: regulation of transcription
Process: regulation of transcription, DNA-dependent
||
>>>
Process: regulation of cellular physiological process
Process: regulation of cellular metabolism
Process: regulation of nucleobase, nucleoside, nucleotide and nucleic acid metabolism
Process: regulation of transcription
Process: regulation of transcription, DNA-dependent
||
>>>
Process: cellular process
Process: regulation of cellular process
Process: regulation of cellular physiological process
Process: regulation of cellular metabolism
Process: regulation of nucleobase, nucleoside, nucleotide and nucleic acid metabolism
Process: regulation of transcription
Process: regulation of transcription, DNA-dependent
||
>>>
Process: cellular physiological process
Process: cellular metabolism
Process: nucleobase, nucleoside, nucleotide and nucleic acid metabolism
Process: transcription
Process: transcription, DNA-dependent
Process: regulation of transcription, DNA-dependent
||
>>>
Process: regulation of transcription
Process: regulation of transcription, DNA-dependent
||
>>>
Process: regulation of nucleobase, nucleoside, nucleotide and nucleic acid metabolism
Process: regulation of transcription
Process: regulation of transcription, DNA-dependent
||
>>>
Process: regulation of cellular metabolism
Process: regulation of nucleobase, nucleoside, nucleotide and nucleic acid metabolism
Process: regulation of transcription
Process: regulation of transcription, DNA-dependent
||
>>>
Process: regulation of cellular physiological process
Process: regulation of cellular metabolism
Process: regulation of nucleobase, nucleoside, nucleotide and nucleic acid metabolism
Process: regulation of transcription
Process: regulation of transcription, DNA-dependent
||
>>>
Process: regulation of biological process
Process: regulation of physiological process
Process: regulation of metabolism
Process: regulation of cellular metabolism
Process: regulation of nucleobase, nucleoside, nucleotide and nucleic acid metabolism
Process: regulation of transcription
Process: regulation of transcription, DNA-dependent
||
>>>
Process: regulation of cellular physiological process
Process: regulation of cellular metabolism
Process: regulation of nucleobase, nucleoside, nucleotide and nucleic acid metabolism
Process: regulation of transcription
Process: regulation of transcription, DNA-dependent
||
>>>
Process: regulation of cellular process
Process: regulation of cellular physiological process
Process: regulation of cellular metabolism
Process: regulation of nucleobase, nucleoside, nucleotide and nucleic acid metabolism
Process: regulation of transcription
Process: regulation of transcription, DNA-dependent
||
>>>
Component: cell
Component: intracellular
# Location:
Cytoplasm
# Blattner_Number:
b3753
# Gene_Sequence:
TTGGCTACAATGAAAGATGTTGCCCGCCTGGCGGGCGTTTCTACCTCAACAGTTTCTCACGTTATCAATA
AAGATCGCTTCGTCAGTGAAGCGATTACCGCCAAAGTTGAAGCGGCGATTAAAGAACTCAATTACGCGCC
ATCAGCTCTGGCGCGTAGCCTCAAACTCAATCAAACACATACCATTGGCATGTTGATCACTGCCAGTACC
AATCCTTTCTATTCAGAACTGGTGCGTGGCGTTGAACGCAGCTGCTTCGAACGCGGTTATAGTCTCGTCC
TTTGCAATACCGAAGGCGATGAACAGCGGATGAATCGCAATCTGGAAACGCTGATGCAAAAACGCGTTGA
TGGCTTGCTGTTACTGTGCACCGAAACGCATCAACCTTCGCGTGAAATCATGCAACGTTATCCGACAGTG
CCTACTGTGATGATGGACTGGGCTCCGTTCGATGGCGACAGCGATCTTATTCAGGATAACTCGTTGCTGG
GCGGAGACTTAGCAACGCAATATCTGATCGATAAAGGTCATACCCGTATCGCCTGTATTACCGGCCCGCT
GGATAAAACTCCGGCGCGCCTGCGGTTGGAAGGTTATCGGGCGGCGATGAAACGTGCGGGTCTCAACATT
CCTGATGGCTATGAAGTCACTGGTGATTTTGAATTTAACGGCGGGTTTGACGCTATGCGCCAACTGCTAT
CACATCCGCTGCGTCCTCAGGCCGTCTTTACCGGAAATGACGCTATGGCTGTTGGCGTTTACCAGGCGTT
ATATCAGGCAGAGTTACAGGTTCCGCAGGATATCGCGGTGATTGGCTATGACGATATCGAACTGGCAAGC
TTTATGACGCCACCATTAACCACTATCCACCAACCGAAAGATGAACTGGGGGAGCTGGCGATTGATGTAC
TCATCCATCGGATAACCCAGCCGACCCTTCAGCAACAACGATTACAACTTACTCCGATTCTGATGGAACG
CGGTTCGGCTTAG
# Upstream_100_bases:
CCATGCTGCCGCTGCGATTGCCGTAACACGTAAAGGCGCACAACCTTCCGTACCGTGGCGTGAAGAGATC
GACGCATTTTTAGACAGGCAGAGGTGACGC
# Blattner_No_Ontology:
Carbon compound catabolism
# Gene_Position:
3936250-3937242 (Clockwise)
# Centisome_Position:
84.839
# Gene_Name:
rbsR
# GC_Content:
50.65%
# Metabolic_Importance:
Non_Essential
# Preceding_Gene:
rbsK
# Following_Gene:
yieO
# Operon_Status:
No
# Operon_Components:
None
# Paralogues:
b1658 (purR) 46; b3934 (cytR) 35; b2837 (galR) 32; b1320 (ycjW) 30; b0345 (lacI) 33; b2151 (galS) 29; b2714 (ascG) 27; b3438 (gntR) 28; b1620 (malI) 25; b0080 (fruR) 27; b4264 (idnR) 26; b3075 (ebgR) 26; b3751 (rbsB) 26; b4241 (treR) 23;
# Copy Number:
Unknown
# RNA_Copy_No.:
Log phase (2max): 0.56
Stationary phase (2max): 0.15
Ref: Nature Biotech., 18, 1262-68, Dec. 2000 (PMID=11101804)
# Genbank_ID_(DNA):
G1790194
# Genbank_ID_(Protein):
AAC76776.1
# SWISS_PROT_(AC_&_ID):
$ RBSR_ECOLI (P0ACQ0)
# 2D_Gel_Image:
Not Available
# Other_Databases:
- ECOCYC: EG10819
- EcoGene: EG10819
- EMBL: M13169
- InterPro: IPR000843; IPR010982; IPR001761
- Pfam: PF00356; PF00532
- PIR: B65179
- PRINTS: PR00036
- PROSITE: PS00356
# Pfam_Domain/Function:
PF00356 Bacterial regulatory proteins, lacI family; PF00532 Periplasmic binding proteins and sugar binding domain of the LacI family;
# Homologues:
Not Available
# Similarity:
Contains 1 HTH lacI-type DNA-binding domain.
# EC_Number:
Not Available
# No._of_Amino_Acids:
330 (Translated Protein)
329 (Mature Protein)
# Molecular_Weight:
36612 36481
# Theoretical_pI:
5.21
# Theoretical_pI (Mature):
5.21
# Sequence:
// MATMKDVARLAGVSTSTVSHVINKDRFVSEAITAKVEAAIKELNYAPSALARSLKLNQTH
// TIGMLITASTNPFYSELVRGVERSCFERGYSLVLCNTEGDEQRMNRNLETLMQKRVDGLL
// LLCTETHQPSREIMQRYPTVPTVMMDWAPFDGDSDLIQDNSLLGGDLATQYLIDKGHTRI
// ACITGPLDKTPARLRLEGYRAAMKRAGLNIPDGYEVTGDFEFNGGFDAMRQLLSHPLRPQ
// AVFTGNDAMAVGVYQALYQAELQVPQDIAVIGYDDIELASFMTPPLTTIHQPKDELGELA
// IDVLIHRITQPTLQQQRLQLTPILMERGSA
// /\
// ATMKDVARLAGVSTSTVSHVINKDRFVSEAITAKVEAAIKELNYAPSALARSLKLNQTHT
// IGMLITASTNPFYSELVRGVERSCFERGYSLVLCNTEGDEQRMNRNLETLMQKRVDGLLL
// LCTETHQPSREIMQRYPTVPTVMMDWAPFDGDSDLIQDNSLLGGDLATQYLIDKGHTRIA
// CITGPLDKTPARLRLEGYRAAMKRAGLNIPDGYEVTGDFEFNGGFDAMRQLLSHPLRPQA
// VFTGNDAMAVGVYQALYQAELQVPQDIAVIGYDDIELASFMTPPLTTIHQPKDELGELAI
// DVLIHRITQPTLQQQRLQLTPILMERGSA
# PROSITE_Motif:
HTH_LACI_FAMILY; PATTERN. PS00356; Bacterial regulatory proteins, lacI family signature. [LIVM]-x-[DE]-[LIVM]-A-x(2)-[STAGV]-x-V-[GSTP]-x(2)-[STAG]-[LIVMA]-x(2)-PA [LIVMFYAN]-[LIVMC]. PDOC00366; //
# Important_Sites:
Not Available
# Transmembrane:
Not Available
# Cys/Met_Content:
1.2 %Cys (Translated Protein)
3.9 %Met (Translated Protein)
5.2 %Cys+Met (Translated Protein)
1.2 %Cys (Mature Protein)
3.6 %Met (Mature Protein)
4.9 %Cys+Met (Mature Protein)
# Secondary_Structure_(PDB):
ATIKDVAKRANVSTTTVSHVINKTRFVAEETRNAVWAAIKELHYSPSAVAR
CCHHHHHHHHCCCHHHHHHHHCCCCCCCHHHHHHHHHHHHHHCCCCCHHHH
SLKVNHTKSIGLLATSSEAAYFAEIIEAVEKNCFQKGYTLILGNAWNNLEK
HHHHCCCCEEEEEEECCCCHHHHHHHHHHHHHHHHCCEEEEEEECCCCHHH
QRAYLSMMAQKRVDGLLVMCSEYPEPLLAMLEEYRHIPMVVMDWGEAKADF
HHHHHHHHHHHCCEEEEEECCCCCHHHHHHHHHCCCEEEEEECCCCCCCCC
TDAVIDNAFEGGYMAGRYLIERGHREIGVIPGPLERNTGAGRLAGFMKAME
EEEEEECHHHHHHHHHHHHHHHCCCEEEEEEEECCCHHHHHHHHHHHHHHH
EAMIKVPESWIVQGDFEPESGYRAMQQILSQPHRPTAVFCGGDIMAMGALC
HHCCCCCCCEEEEECCCHHHHHHHHHHHHHCCCCCEEEEEECHHHHHHHHH
AADEMGLRVPQDVSLIGYDNVRNARYFTPALTTIHQPKDSLGETAFNMLLD
HHHHHCCCCCCCEEEEEECCCCCCCCCCEEEEEEEEHHHHHHHHHHHHHHH
RIVNKREEPQSIEVHPRLIERRSVADGPFRDYR
HHCCCCCCEEEEEEEEEEEEEEECCCCCCCCCC
# PDB_Accession:
& Model Based on 1QPZ (1-329)
# Resolution:
Not Available
# Structure_CLASS:
Alpha Beta
# Quaternary_Structure:
Not Available
# Interacting_Partners:
1) araF (hypothetical), 2) ytfJ (hypothetical),
# Cofactors:
Not Available
# Metals_Ions:
Not Available
# Kcat_Value_[1/min]:
Not Available
# Specific_Activity_[micromol/min/mg]:
Not Available
# Km_Value_[mM]:
Not Available
# Substrates:
Not Available
# Products:
Not Available
# Specific_Reaction:
Not Available
# General_Reaction:
Not Available
# Inhibitor:
Not Available
# Priority:
1.0
# Status:
Selected, Cloned, Expressed, Soluble
# Availability:
RSGI
#END_ECARDFILE
#BEGIN_ECARDFILE
# Entry_ID:
CC1735A.1
# Accession_No.:
UA0001735
# Name:
Hypothetical protein ydcD
# Alternate_Names:
ORF-E2
# General_Function:
Not Available
# COG_Function:
Transcription (code K)
# COG_ID:
COG0864 Predicted transcriptional regulators containing the CopG/Arc/MetJ DNA-binding domain and a metal-binding domain (Evalue = 2e-91)
# Specific_Function:
Not Available
# Riley_Gene_Function:
unknown CDS
# Riley_Cell_Function:
>>>
Not Available
# Gene_Ontology:
>>>
Function: Not Available
||
>>>
Process: Not Available
||
>>>
Component: Not Available
# Location:
Cytoplasm
# Blattner_Number:
b1457
# Gene_Sequence:
ATGCTTCAAATTATTAGAGGCAAACTTGTCATTTTTTTAATTACCCTTTGTTTATTTGTTGTTTACCTTG
GGTTTGATAACAATTCAAATTCTGACATCGTATTTTATGGACATAAAACACCAAAGAGCGTTGAGATATA
TCTTTCTGAAAAAAATATTATTTATAAAATAATTAATGACCAAAAAATTAGTAGAGGGAATGGTCATTTT
ATAAGTATAATGGTTAATAATTACAGGACGCACTGTGGAGTGGTTGATATAAATCTTAATTTTTTCAATG
ATATTCTTTATAGCGTGCGATTAAAAAACATTAGTAAACTGGAGAATATGGAGTTCTGCGCTACAAAACA
ACGGGTGTATTTTAGTGATAAAAACAAGAAGGCTAGTTATAAAATAATTAATTATGGAGACTATTATGAT
GTTGATTATTATGATAACAATTTGAAAAATGAAGTTTTTGACTGGATTGGTAAATGGTCATAA
# Upstream_100_bases:
TGTAGCGATGCATGTATTGAAAAATATAACACTGGGCAACTCTTCGGGTTAGATGGTATAAAAGCAGATA
ATCCAATAAAAGCAAAGCAAGGGAGTTCAG
# Blattner_No_Ontology:
Hypothetical, unclassified, unknown
# Gene_Position:
1527946-1528428 (Clockwise)
# Centisome_Position:
32.932
# Gene_Name:
ydcD
# GC_Content:
27.33%
# Metabolic_Importance:
Non_Essential
# Preceding_Gene:
rhsE
# Following_Gene:
b1458
# Operon_Status:
No
# Operon_Components:
None
# Paralogues:
None
# Copy Number:
Unknown
# RNA_Copy_No.:
Log phase (2max): 0.07
Stationary phase (2max): 0.1
Ref: Nature Biotech., 18, 1262-68, Dec. 2000 (PMID=11101804)
# Genbank_ID_(DNA):
G1787729
# Genbank_ID_(Protein):
AAC74539.1
# SWISS_PROT_(AC_&_ID):
$ YDCD_ECOLI (P31991)
# 2D_Gel_Image:
Not Available
# Other_Databases:
- ECOCYC: EG11760
- EcoGene: EG11760
- EMBL: X60998
- PIR: D64898
# Pfam_Domain/Function:
None
# Homologues:
Not Available
# Similarity:
Not Available
# EC_Number:
Not Available
# No._of_Amino_Acids:
160 (Translated Protein)
136 (Mature Protein)
# Molecular_Weight:
18907 16158
# Theoretical_pI:
8.96
# Theoretical_pI (Mature):
8.58
# Sequence:
// MLQIIRGKLVIFLITLCLFVVYLGFDNNSNSDIVFYGHKTPKSVEIYLSEKNIIYKIIND
// QKISRGNGHFISIMVNNYRTHCGVVDINLNFFNDILYSVRLKNISKLENMEFCATKQRVY
// FSDKNKKASYKIINYGDYYDVDYYDNNLKNEVFDWIGKWS
// /\
// FDNNSNSDIVFYGHKTPKSVEIYLSEKNIIYKIINDQKISRGNGHFISIMVNNYRTHCGV
// VDINLNFFNDILYSVRLKNISKLENMEFCATKQRVYFSDKNKKASYKIINYGDYYDVDYY
// DNNLKNEVFDWIGKWS
# PROSITE_Motif:
Not Available
# Important_Sites:
Not Available
# Transmembrane:
Not Available
# Cys/Met_Content:
1.9 %Cys (Translated Protein)
1.9 %Met (Translated Protein)
3.8 %Cys+Met (Translated Protein)
1.5 %Cys (Mature Protein)
1.5 %Met (Mature Protein)
2.9 %Cys+Met (Mature Protein)
# Secondary_Structure:
>YDCD_ECOLI (Translated Protein)
MLQIIRGKLVIFLITLCLFVVYLGFDNNSNSDIVFYGHKTPKSVEIYLSEKNIIYKIIND
CCEEECCCHHHHHHHHHHHHHHHEECCCCCCCEEEEECCCCCEEEEEEECCEEEEEEECC
QKISRGNGHFISIMVNNYRTHCGVVDINLNFFNDILYSVRLKNISKLENMEFCATKQRVY
CEECCCCCCEEEEEECCCCCEEEEEEEEHHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEE
FSDKNKKASYKIINYGDYYDVDYYDNNLKNEVFDWIGKWS
EEECCCCCCEEEEECCCEEEEEHHCCCCCHHHHHHHHCCC
/\
>YDCD_ECOLI (Mature Protein)
LQIIRGKLVIFLITLCLFVVYLGFDNNSNSDIVFYGHKTPKSVEIYLSEKNIIYKIINDQ
CEEECCCHHHHHHHHHHHHHHHEECCCCCCCEEEEECCCCCEEEEEEECCEEEEEEECCC
KISRGNGHFISIMVNNYRTHCGVVDINLNFFNDILYSVRLKNISKLENMEFCATKQRVYF
EECCCCCCEEEEEECCCCCEEEEEEEEHHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEE
SDKNKKASYKIINYGDYYDVDYYDNNLKNEVFDWIGKWS
EECCCCCCEEEEECCCEEEEEHHCCCCCHHHHHHHHCCC
# PDB_Accession:
& Not Available
# Resolution:
Not Available
# Structure_CLASS:
Alpha Beta
# Quaternary_Structure:
homotetrameric A4 Complex of ydcD
# Interacting_Partners:
1) ydcD,
# Cofactors:
Not Available
# Metals_Ions:
Not Available
# Kcat_Value_[1/min]:
Not Available
# Specific_Activity_[micromol/min/mg]:
Not Available
# Km_Value_[mM]:
Not Available
# Substrates:
Not Available
# Products:
Not Available
# Specific_Reaction:
Not Available
# General_Reaction:
Not Available
# Inhibitor:
Not Available
# Priority:
9
# Status:
Not Available
# Availability:
Not Available
#END_ECARDFILE
#BEGIN_ECARDFILE
# Entry_ID:
CC0692A.1
# Accession_No.:
UA0000692
# Name:
Fucose operon fucU protein
# Alternate_Names:
Not Available
# General_Function:
Energy metabolism
# COG_Function:
Carbohydrate transport and metabolism (code G)
# COG_ID:
COG4154 Fucose dissimilation pathway protein FucU (Evalue = 6e-75)
# Specific_Function:
Not Available
# Riley_Gene_Function:
conserved protein of fucose operon; L-fucose mutarotase
# Riley_Cell_Function:
>>>
Not Available
# Gene_Ontology:
>>>
Function: Not Available
||
>>>
Process: physiological process
Process: cellular physiological process
Process: transport
Process: carbohydrate transport
||
>>>
Process: localization
Process: establishment of localization
Process: transport
Process: carbohydrate transport
||
>>>
Process: cellular process
Process: cellular physiological process
Process: transport
Process: carbohydrate transport
||
>>>
Component: Not Available
# Location:
Cytoplasm
# Blattner_Number:
b2804
# Gene_Sequence:
ATGCTGAAAACAATTTCGCCGTTAATTTCTCCCGAACTATTGAAAGTGCTGGCAGAGATGGGACATGGAG
ATGAAATTATTTTTTCCGATGCTCACTTTCCCGCCCATTCGATGGGACCGCAGGTGATCCGCGCTGATGG
CCTGTTGGTGAGCGACTTGCTCCAGGCGATTATCCCGTTATTTGAACTGGACAGTTATGCACCGCCGCTG
GTGATGATGGCGGCGGTAGAAGGTGACACTCTCGATCCTGAAGTAGAACGACGTTACCGTAATGCGCTTT
CACTACAAGCCCCGTGTCCTGACATCATCCGCATCAATCGTTTTGCGTTTTATGAACGGGCGCAAAAAGC
CTTTGCGATCGTTATCACAGGCGAACGAGCGAAGTACGGGAATATTCTTTTAAAAAAAGGGGTAACACCG
TAA
# Upstream_100_bases:
GGGGAATTTAACAGCCCGGAAGAAGCCCGCGCACAGATTCATTATCAGTACCGTTATTTCTACCCGCAAA
CTGAACCTGAATTTATAGAGGAAGTGTGAA
# Blattner_No_Ontology:
Carbon compound catabolism
# Gene_Position:
2936910-2937332 (Clockwise)
# Centisome_Position:
63.300
# Gene_Name:
fucU
# GC_Content:
48.94%
# Metabolic_Importance:
Non_Essential
# Preceding_Gene:
fucK
# Following_Gene:
fucR
# Operon_Status:
Yes
# Operon_Components:
fucP_fucI_fucK_fucU_fucR Ref: Center for Information Biology and DNA Data Bank of Japan, National Institute of Genetics http://www.cib.nig.ac.jp/dda/taitoh/ecoli.operon.html
# Paralogues:
None
# Copy Number:
Unknown
# RNA_Copy_No.:
Log phase (2max): 0.8
Stationary phase (2max): 0.51
Ref: Nature Biotech., 18, 1262-68, Dec. 2000 (PMID=11101804)
# Genbank_ID_(DNA):
G1789169
# Genbank_ID_(Protein):
AAC75846.1
# SWISS_PROT_(AC_&_ID):
$ FUCU_ECOLI (P0AEN8)
# 2D_Gel_Image:
Not Available
# Other_Databases:
- ECOCYC: EG10355
- EcoGene: EG10355
- EMBL: X15025
- InterPro: IPR007721
- Pfam: PF05025
- PIR: H65062
# Pfam_Domain/Function:
PF05025 RbsD / FucU transport protein family;
# Homologues:
Organism=Homo sapiens, GI38348262, Length=134, Positives=59%, Blast Score=101
Organism=Mus musculus, GI44771116, Length=169, Positives=65%, Blast Score=99.8
# Similarity:
Not Available
# EC_Number:
Not Available
# No._of_Amino_Acids:
140 (Translated Protein)
140 (Mature Protein)
# Molecular_Weight:
15473 15473
# Theoretical_pI:
5.66
# Theoretical_pI (Mature):
5.66
# Sequence:
// MLKTISPLISPELLKVLAEMGHGDEIIFSDAHFPAHSMGPQVIRADGLLVSDLLQAIIPL
// FELDSYAPPLVMMAAVEGDTLDPEVERRYRNALSLQAPCPDIIRINRFAFYERAQKAFAI
// VITGERAKYGNILLKKGVTP
// /\
// MLKTISPLISPELLKVLAEMGHGDEIIFSDAHFPAHSMGPQVIRADGLLVSDLLQAIIPL
// FELDSYAPPLVMMAAVEGDTLDPEVERRYRNALSLQAPCPDIIRINRFAFYERAQKAFAI
// VITGERAKYGNILLKKGVTP
# PROSITE_Motif:
Not Available
# Important_Sites:
Not Available
# Transmembrane:
Not Available
# Cys/Met_Content:
0.7 %Cys (Translated Protein)
3.6 %Met (Translated Protein)
4.3 %Cys+Met (Translated Protein)
0.7 %Cys (Mature Protein)
3.6 %Met (Mature Protein)
4.3 %Cys+Met (Mature Protein)
# Secondary_Structure:
>FUCU_ECOLI (Translated Protein)
MLKTISPLISPELLKVLAEMGHGDEIIFSDAHFPAHSMGPQVIRADGLLVSDLLQAIIPL
CCCCCCCCCCHHHHHHHHHHCCCCEEEEECCCCCCCCCCCEEEECCCCCHHHHHHHHHHH
FELDSYAPPLVMMAAVEGDTLDPEVERRYRNALSLQAPCPDIIRINRFAFYERAQKAFAI
CCCCCCCCHHHHHHHCCCCCCCCCHHHHHHHHHHCCCCCCCEEEHHHHHHHCCCCEEEEE
VITGERAKYGNILLKKGVTP
EEECCCCHHCCEEEECCCCC
/\
>FUCU_ECOLI (Mature Protein)
LKTISPLISPELLKVLAEMGHGDEIIFSDAHFPAHSMGPQVIRADGLLVSDLLQAIIPLF
CCCCCCCCCHHHHHHHHHHCCCCEEEEECCCCCCCCCCCEEEECCCCCHHHHHHHHHHHC
ELDSYAPPLVMMAAVEGDTLDPEVERRYRNALSLQAPCPDIIRINRFAFYERAQKAFAIV
CCCCCCCHHHHHHHCCCCCCCCCHHHHHHHHHHCCCCCCCEEEHHHHHHHCCCCEEEEEE
ITGERAKYGNILLKKGVTP
EECCCCHHCCEEEECCCCC
# PDB_Accession:
& Not Available
# Resolution:
Not Available
# Structure_CLASS:
Alpha Beta
# Quaternary_Structure:
Not Available
# Interacting_Partners:
Not Available
# Cofactors:
Not Available
# Metals_Ions:
Not Available
# Kcat_Value_[1/min]:
Not Available
# Specific_Activity_[micromol/min/mg]:
Not Available
# Km_Value_[mM]:
Not Available
# Substrates:
Not Available
# Products:
Not Available
# Specific_Reaction:
Not Available
# General_Reaction:
Not Available
# Inhibitor:
Not Available
# Priority:
7.6
# Status:
Selected
# Availability:
NYSGXRC
#END_ECARDFILE
#BEGIN_ECARDFILE
# Entry_ID:
CC2271A.1
# Accession_No.:
UA0002271
# Name:
Cryptic L-xylulose kinase
# Alternate_Names:
L-xylulokinase
# General_Function:
Energy metabolism; Actin-like ATPase domain
# COG_Function:
Carbohydrate transport and metabolism (code G)
# COG_ID:
COG1070 Sugar (pentulose and hexulose) kinases (Evalue = 0.0)
# Specific_Function:
Not Available
# Riley_Gene_Function:
3-keto-L-gulonate kinase; L-xylulose kinase
# Riley_Cell_Function:
>>>
Metabolism
Carbon compound utilization
Carbohydrates/Carbon compounds
L-lyxose metabolism
||
>>>
Metabolism
Carbon compound utilization
Carbohydrates/Carbon compounds
L-ascorbate degradation
# Gene_Ontology:
>>>
Function: Not Available
||
>>>
Process: physiological process
Process: metabolism
Process: macromolecule metabolism
Process: carbohydrate metabolism
||
>>>
Process: primary metabolism
Process: carbohydrate metabolism
||
>>>
Component: Not Available
# Location:
Cytoplasm
# Blattner_Number:
b3580
# Gene_Sequence:
ATGACGCAATACTGGCTGGGGTTAGATTGTGGCGGTAGCTGGCTGAAAGCCGGGCTGTATGACCGCGAAG
GCCGGGAGGCAGGCGTGCAGCGCCTGCCGCTGTGCGCATTAAGCCCGCAGCCAGGCTGGGCAGAGCGCGA
TATGGCAGAACTGTGGCAATGCTGCATGGCTGTCATTCGCGCCCTGCTTACTCATTCTGGTGTTAGCGGG
GAACAAATTGTCGGTATCGGCATCTCCGCACAGGGAAAGGGCTTGTTTTTGCTGGATAAAAACGACAAAC
CGCTCGGGAATGCTATTTTGTCCTCGGACCGCCGGGCGATGGAAATCGTTCGTCGCTGGCAGGAAGATGG
CATCCCGGAAAAACTCTACCCGCTGACCCGACAAACCTTGTGGACCGGGCATCCGGTGTCGCTGTTACGC
TGGCTGAAAGAGCACGAACCAGAACGCTACGCGCAAATTGGCTGCGTGATGATGACGCACGACTACCTGC
GCTGGTGTTTAACTGGCGTCAAAGGCTGTGAAGAGAGCAATATTTCCGAGTCCAACCTCTACAACATGAG
TCTTGGGGAATATGACCCGTGCCTCACCGACTGGCTGGGGATCGCTGAAATCAATCACGCCCTGCCGCCT
GTTGTCGGATCTGCCGAAATCTGCGGGGAGATCACCGCTCAGACAGCCGCCCTGACCGGTCTGAAAGCGG
GTACGCCCGTTGTTGGCGGCCTGTTTGATGTGGTTTCCACCGCACTCTGCGCCGGGATCGAAGACGAATT
TACCCTCAATGCGGTGATGGGGACCTGGGCGGTGACCAGCGGCATAACCCGCGGTTTACGTGACGGTGAA
GCGCATCCGTATGTCTATGGTCGCTACGTTAACGATGGTGAATTTATCGTTCACGAAGCCAGCCCTACCT
CTTCCGGCAACCTCGAATGGTTTACCGCACAGTGGGGAGAAATCTCGTTTGATGAGATCAATCAGGCCGT
TGCCAGCTTGCCGAAGGCTGGGGGCGATCTCTTTTTCCTGCCGTTCCTGTACGGCAGCAACGCCGGACTC
GAGATGACCAGTGGTTTCTACGGGATGCAGGCCATTCACACCCGCGCGCACCTGTTGCAGGCCATCTATG
AAGGGGTGGTGTTCAGCCATATGACCCACCTCAACCGAATGCGCGAACGTTTTACTGATGTTCACACCCT
ACGCGTCACTGGCGGCCCGGCGCACTCCGATGTCTGGATGCAAATGCTGGCGGACGTCAGCGGTCTGCGT
ATCGAGCTGCCGCAGGTGGAAGAAACCGGCTGCTTTGGTGCGGCCCTTGCCGCCCGCGTCGGCACCGGGG
TTTATCACAACTTCAGCGAAGCCCAACGTGACTTGCGACACCCGGTGCGCACCCTGCTGCCAGATATGAC
CGCCCATCAGCTTTACCAAAAAAAATATCAACGTTATCAGCATCTCATTGCCGCACTTCAGGGCTTTCAC
GCCCGCATTAAGGAGCACACATTATGA
# Upstream_100_bases:
CTTTAGCGACGCACTGGGGAATCAGGTTCGCGACATGTTTGTTAAAGATGTGCCGCAGGGAGCTGATCTG
CTGAAAGCCGTGGATGAGGTGCAATAAACC
# Blattner_No_Ontology:
Carbon compound catabolism
# Gene_Position:
3745107-3746603 (Clockwise)
# Centisome_Position:
80.719
# Gene_Name:
lyx or lyxK or sgbK or xylK
# GC_Content:
57.45%
# Metabolic_Importance:
Non_Essential
# Preceding_Gene:
yiaO
# Following_Gene:
sgbH
# Operon_Status:
Yes
# Operon_Components:
yiaM_yiaN_yiaO_lyxK_sgbH Ref: RegulonDB http://kinich.cifn.unam.mx:8850/db/regulondb_cgi.query_simple?v_organism=ECK12&v_table=3&v_name=lyx
# Paralogues:
b1511 (ydeV) 25; b3564 (xylB) 23; b3926 (glpK) 23; b2803 (fucK) 21;
# Copy Number:
Unknown
# RNA_Copy_No.:
Log phase (2max): 1.41
Stationary phase (2max): 0.21
Ref: Nature Biotech., 18, 1262-68, Dec. 2000 (PMID=11101804)
# Genbank_ID_(DNA):
G1790005
# Genbank_ID_(Protein):
AAC76604.1
# SWISS_PROT_(AC_&_ID):
$ LYXK_ECOLI (P37677)
# 2D_Gel_Image:
Not Available
# Other_Databases:
- ECOCYC: EG12284
- EcoGene: EG12284
- EMBL: U00039
- InterPro: IPR000577
- Pfam: PF02782; PF00370
- PIR: S47801
- PROSITE: PS00933
# Pfam_Domain/Function:
PF02782 FGGY family of carbohydrate kinases, C-terminal domain; PF00370 FGGY family of carbohydrate kinases, N-terminal domain;
# Homologues:
Organism=Homo sapiens, GI22749521, Length=301, Positives=51%, Blast Score=65.9
Organism=Caenorhabditis elegans, GI17535599, Length=502, Positives=39%, Blast Score=76.6
Organism=Mus musculus, GI28893497, Length=516, Positives=41%, Blast Score=102
Organism=Drosophila melanogaster, GI24655560, Length=576, Positives=40%, Blast Score=89.7
Organism=Drosophila melanogaster, GI24655570, Length=576, Positives=40%, Blast Score=89.7
Organism=Drosophila melanogaster, GI24655565, Length=576, Positives=40%, Blast Score=89.7
Organism=Drosophila melanogaster, GI24655555, Length=576, Positives=40%, Blast Score=89.7
Organism=Drosophila melanogaster, GI24655574, Length=576, Positives=40%, Blast Score=89.7
Organism=Drosophila melanogaster, GI24656367, Length=539, Positives=40%, Blast Score=84.7
Organism=Drosophila melanogaster, GI21357867, Length=556, Positives=38%, Blast Score=82.4
Organism=Drosophila melanogaster, GI24657102, Length=548, Positives=39%, Blast Score=75.5
Organism=Drosophila melanogaster, GI24657106, Length=548, Positives=39%, Blast Score=75.5
Organism=Drosophila melanogaster, GI24656372, Length=406, Positives=48%, Blast Score=68.6
# Similarity:
Belongs to the FGGY kinase family.
# EC_Number:
2.7.1.53
# No._of_Amino_Acids:
498 (Translated Protein)
497 (Mature Protein)
# Molecular_Weight:
55156 55024
# Theoretical_pI:
6.00
# Theoretical_pI (Mature):
6.00
# Sequence:
// MTQYWLGLDCGGSWLKAGLYDREGREAGVQRLPLCALSPQPGWAERDMAELWQCCMAVIR
// ALLTHSGVSGEQIVGIGISAQGKGLFLLDKNDKPLGNAILSSDRRAMEIVRRWQEDGIPE
// KLYPLTRQTLWTGHPVSLLRWLKEHEPERYAQIGCVMMTHDYLRWCLTGVKGCEESNISE
// SNLYNMSLGEYDPCLTDWLGIAEINHALPPVVGSAEICGEITAQTAALTGLKAGTPVVGG
// LFDVVSTALCAGIEDEFTLNAVMGTWAVTSGITRGLRDGEAHPYVYGRYVNDGEFIVHEA
// SPTSSGNLEWFTAQWGEISFDEINQAVASLPKAGGDLFFLPFLYGSNAGLEMTSGFYGMQ
// AIHTRAHLLQAIYEGVVFSHMTHLNRMRERFTDVHTLRVTGGPAHSDVWMQMLADVSGLR
// IELPQVEETGCFGAALAARVGTGVYHNFSEAQRDLRHPVRTLLPDMTAHQLYQKKYQRYQ
// HLIAALQGFHARIKEHTL
// /\
// TQYWLGLDCGGSWLKAGLYDREGREAGVQRLPLCALSPQPGWAERDMAELWQCCMAVIRA
// LLTHSGVSGEQIVGIGISAQGKGLFLLDKNDKPLGNAILSSDRRAMEIVRRWQEDGIPEK
// LYPLTRQTLWTGHPVSLLRWLKEHEPERYAQIGCVMMTHDYLRWCLTGVKGCEESNISES
// NLYNMSLGEYDPCLTDWLGIAEINHALPPVVGSAEICGEITAQTAALTGLKAGTPVVGGL
// FDVVSTALCAGIEDEFTLNAVMGTWAVTSGITRGLRDGEAHPYVYGRYVNDGEFIVHEAS
// PTSSGNLEWFTAQWGEISFDEINQAVASLPKAGGDLFFLPFLYGSNAGLEMTSGFYGMQA
// IHTRAHLLQAIYEGVVFSHMTHLNRMRERFTDVHTLRVTGGPAHSDVWMQMLADVSGLRI
// ELPQVEETGCFGAALAARVGTGVYHNFSEAQRDLRHPVRTLLPDMTAHQLYQKKYQRYQH
// LIAALQGFHARIKEHTL
# PROSITE_Motif:
FGGY_KINASES_2; PATTERN. PS00445; FGGY family of carbohydrate kinases signature 2. [GSA]-x-[LIVMFYW]-x-G-[LIVM]-x(7,8)-[HDENQ]-[LIVMF]-x(2)-[AS]-[STALIVM]-PA [LIVMFY]-[DEQ]. PDOC00408; //
FGGY_KINASES_1; PATTERN. PS00933; FGGY family of carbohydrate kinases signature 1. [MFYGS]-x-[PST]-x(2)-K-[LIVMFYW]-x-W-[LIVMF]-x-[DENQTKR]-[ENQH]. PDOC00408; //
# Important_Sites:
Not Available
# Transmembrane:
Not Available
# Cys/Met_Content:
2.2 %Cys (Translated Protein)
3.0 %Met (Translated Protein)
5.2 %Cys+Met (Translated Protein)
2.2 %Cys (Mature Protein)
2.8 %Met (Mature Protein)
5.0 %Cys+Met (Mature Protein)
# Secondary_Structure:
>LYXK_ECOLI (Translated Protein)
MTQYWLGLDCGGSWLKAGLYDREGREAGVQRLPLCALSPQPGWAERDMAELWQCCMAVIR
CCCEEEEEEECCCCEEEEEECCCCCEEEEEEEEEEEECCCCCCEEECHHHHHHHHHHHHH
ALLTHSGVSGEQIVGIGISAQGKGLFLLDKNDKPLGNAILSSDRRAMEIVRRWQEDGIPE
HHHHHCCCCHHHEEEEEEECCCEEEEEECCCCCCCCCCCCCCCCCCHHHHHHHHHHCCHH
KLYPLTRQTLWTGHPVSLLRWLKEHEPERYAQIGCVMMTHDYLRWCLTGVKGCEESNISE
HHHHHHCCCCCCCCCHHHHHHHHHCCHHHHHHHHHHCCCHHHHHHHHCCCCCCCCCCCCC
SNLYNMSLGEYDPCLTDWLGIAEINHALPPVVGSAEICGEITAQTAALTGLKAGTPVVGG
CCCEECCCCCCCHHHHHHHCCCHHHHHCCCCCCCCCCCEECCHHHHHHCCCCCCCEEEEE
LFDVVSTALCAGIEDEFTLNAVMGTWAVTSGITRGLRDGEAHPYVYGRYVNDGEFIVHEA
HHHHHHHHHHCCCCCCCEEEEEECCCEEEEEECCCCCCCCCCEEEECCCCCCCEEEEHHH
SPTSSGNLEWFTAQWGEISFDEINQAVASLPKAGGDLFFLPFLYGSNAGLEMTSGFYGMQ
HHHHHHHHHHHHHHHCCCCCHHHHHHHHHCCCCCCCEEEEEECCCCCCCHHHHHHHHCCC
AIHTRAHLLQAIYEGVVFSHMTHLNRMRERFTDVHTLRVTGGPAHSDVWMQMLADVSGLR
CCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCEEEEEECCCCCHHHHHHHHHHHCCC
IELPQVEETGCFGAALAARVGTGVYHNFSEAQRDLRHPVRTLLPDMTAHQLYQKKYQRYQ
EEEECCCCCHHHHHHHHHHHHCCCCCCHHHHHHHCCCCCEEEEECHHHHHHHHHHHHHHH
HLIAALQGFHARIKEHTL
HHHHHHHHHHHHHHHCCC
/\
>LYXK_ECOLI (Mature Protein)
TQYWLGLDCGGSWLKAGLYDREGREAGVQRLPLCALSPQPGWAERDMAELWQCCMAVIRA
CCEEEEEEECCCCEEEEEECCCCCEEEEEEEEEEEECCCCCCEEECHHHHHHHHHHHHHH
LLTHSGVSGEQIVGIGISAQGKGLFLLDKNDKPLGNAILSSDRRAMEIVRRWQEDGIPEK
HHHHCCCCHHHEEEEEEECCCEEEEEECCCCCCCCCCCCCCCCCCHHHHHHHHHHCCHHH
LYPLTRQTLWTGHPVSLLRWLKEHEPERYAQIGCVMMTHDYLRWCLTGVKGCEESNISES
HHHHHCCCCCCCCCHHHHHHHHHCCHHHHHHHHHHCCCHHHHHHHHCCCCCCCCCCCCCC
NLYNMSLGEYDPCLTDWLGIAEINHALPPVVGSAEICGEITAQTAALTGLKAGTPVVGGL
CCEECCCCCCCHHHHHHHCCCHHHHHCCCCCCCCCCCEECCHHHHHHCCCCCCCEEEEEH
FDVVSTALCAGIEDEFTLNAVMGTWAVTSGITRGLRDGEAHPYVYGRYVNDGEFIVHEAS
HHHHHHHHHCCCCCCCEEEEEECCCEEEEEECCCCCCCCCCEEEECCCCCCCEEEEHHHH
PTSSGNLEWFTAQWGEISFDEINQAVASLPKAGGDLFFLPFLYGSNAGLEMTSGFYGMQA
HHHHHHHHHHHHHHCCCCCHHHHHHHHHCCCCCCCEEEEEECCCCCCCHHHHHHHHCCCC
IHTRAHLLQAIYEGVVFSHMTHLNRMRERFTDVHTLRVTGGPAHSDVWMQMLADVSGLRI
CCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCEEEEEECCCCCHHHHHHHHHHHCCCE
ELPQVEETGCFGAALAARVGTGVYHNFSEAQRDLRHPVRTLLPDMTAHQLYQKKYQRYQH
EEECCCCCHHHHHHHHHHHHCCCCCCHHHHHHHCCCCCEEEEECHHHHHHHHHHHHHHHH
LIAALQGFHARIKEHTL
HHHHHHHHHHHHHHCCC
# PDB_Accession:
& Not Available
# Resolution:
Not Available
# Structure_CLASS:
Alpha Beta
# Quaternary_Structure:
homodimeric A2 complex of lyxK
# Interacting_Partners:
1) lyxK,
# Cofactors:
--Mg2+
# Metals_Ions:
Not Available
# Kcat_Value_[1/min]:
Not Available
# Specific_Activity_[micromol/min/mg]:
Not Available
# Km_Value_[mM]:
Not Available
# Substrates:
ATP + L-Xylulose
# Products:
ADP + L-Xylulose 5-Phosphate.
# Specific_Reaction:
ATP + L-Xylulose = ADP + L-Xylulose 5-Phosphate.
# General_Reaction:
Phospho group transfer;
# Inhibitor:
Not Available
# Priority:
7.6
# Status:
Selected, Cloned, Expressed, Soluble
# Availability:
NYSGXRC
#END_ECARDFILE
#BEGIN_ECARDFILE
# Entry_ID:
CC3342A.1
# Accession_No.:
UA0003342
# Name:
Hypothetical protein yeaK
# Alternate_Names:
Not Available
# General_Function:
Hypothetical protein HI1434 (YbaK homologue)
# COG_Function:
Function unknown (code S)
# COG_ID:
COG2606 Uncharacterized conserved protein (Evalue = 2e-89)
# Specific_Function:
Not Available
# Riley_Gene_Function:
conserved hypothetical protein
# Riley_Cell_Function:
>>>
Not Available
# Gene_Ontology:
>>>
Function: Not Available
||
>>>
Process: Not Available
||
>>>
Component: Not Available
# Location:
Cytoplasm
# Blattner_Number:
b1787
# Gene_Sequence:
ATGACTGAAATGGCTAAAGGAAGCGTGACGCATCAGCGGTTAATCGCTTTATTATCACAAGAAGGTGCTG
ACTTCCGCGTCGTTACCCATGAAGCGGTAGGTAAATGTGAAGCGGTGTCAGAAATTCGTGGCACCGCTCT
AGGCCAGGGTGCTAAGGCACTGGTATGTAAAGTCAAAGGCAATGGCGTAAATCAACATGTTCTGGCGATC
CTCGCAGCCGATCAACAGGCCGATCTGAGCCAACTCGCCAGCCATATAGGCGGATTACGCGCTTCGTTGG
CCAGCCCGGCGGAAGTCGATGAACTCACAGGCTGTGTCTTCGGCGCGATCCCCCCTTTCAGCTTCCATCC
AAAACTCAAACTGGTTGCCGACCCTCTACTCTTCGAACGATTTGATGAAATCGCCTTCAATGCAGGCATG
CTGGATAAATCCGTTATTTTGAAAACCGCGGATTATTTGCGCATTGCGCAACCAGAACTGGTCAATTTCC
GCCGCACTGCGTAA
# Upstream_100_bases:
TAAAGCTTCCGATGAGCGTTTATATGTCAATAAGCAGAACAAAAACAGCCGTTCATGATAACCTTCTGTG
GTTGTTTGCTTGTAATCTCAGGAGCGTGAA
# Blattner_No_Ontology:
Hypothetical, unclassified, unknown
# Gene_Position:
1871598-1872101 (Clockwise)
# Centisome_Position:
40.339
# Gene_Name:
yeaK
# GC_Content:
51.39%
# Metabolic_Importance:
Unknown
# Preceding_Gene:
yeaJ
# Following_Gene:
b1788
# Operon_Status:
No
# Operon_Components:
None
# Paralogues:
None
# Copy Number:
Unknown
# RNA_Copy_No.:
Log phase (2max): 0.16
Stationary phase (2max): 0.12
Ref: Nature Biotech., 18, 1262-68, Dec. 2000 (PMID=11101804)
# Genbank_ID_(DNA):
G1788087
# Genbank_ID_(Protein):
AAC74857.1
# SWISS_PROT_(AC_&_ID):
$ YEAK_ECOLI (P64483)
# 2D_Gel_Image:
Not Available
# Other_Databases:
- ECOCYC: EG13497
- EcoGene: EG13497
- EMBL: U00096
- InterPro: IPR007214
- Pfam: PF04073
- PIR: C64939
# Pfam_Domain/Function:
PF04073 YbaK / prolyl-tRNA synthetases associated domain;
# Homologues:
Not Available
# Similarity:
Not Available
# EC_Number:
Not Available
# No._of_Amino_Acids:
167 (Translated Protein)
166 (Mature Protein)
# Molecular_Weight:
17851 17720
# Theoretical_pI:
7.04
# Theoretical_pI (Mature):
7.04
# Sequence:
// MTEMAKGSVTHQRLIALLSQEGADFRVVTHEAVGKCEAVSEIRGTALGQGAKALVCKVKG
// NGVNQHVLAILAADQQADLSQLASHIGGLRASLASPAEVDELTGCVFGAIPPFSFHPKLK
// LVADPLLFERFDEIAFNAGMLDKSVILKTADYLRIAQPELVNFRRTA
// /\
// TEMAKGSVTHQRLIALLSQEGADFRVVTHEAVGKCEAVSEIRGTALGQGAKALVCKVKGN
// GVNQHVLAILAADQQADLSQLASHIGGLRASLASPAEVDELTGCVFGAIPPFSFHPKLKL
// VADPLLFERFDEIAFNAGMLDKSVILKTADYLRIAQPELVNFRRTA
# PROSITE_Motif:
Not Available
# Important_Sites:
Not Available
# Transmembrane:
Not Available
# Cys/Met_Content:
1.8 %Cys (Translated Protein)
1.8 %Met (Translated Protein)
3.6 %Cys+Met (Translated Protein)
1.8 %Cys (Mature Protein)
1.2 %Met (Mature Protein)
3.0 %Cys+Met (Mature Protein)
# Secondary_Structure:
>YEAK_ECOLI (Translated Protein)
MTEMAKGSVTHQRLIALLSQEGADFRVVTHEAVGKCEAVSEIRGTALGQGAKALVCKVKG
CCCCCCCCCHHHHHHHHHHCCCCCEEEEEEHHCCCCHHHHHHHHHHCCCCCEEEEEEEEC
NGVNQHVLAILAADQQADLSQLASHIGGLRASLASPAEVDELTGCVFGAIPPFSFHPKLK
CCCCEEEEEEECCCCCCCHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHCCCCCCCCCCCE
LVADPLLFERFDEIAFNAGMLDKSVILKTADYLRIAQPELVNFRRTA
ECCCHHHHHHHHHHHCCCCCCCHHHEECCCHHEECCCCCCCCEECCC
/\
>YEAK_ECOLI (Mature Protein)
TEMAKGSVTHQRLIALLSQEGADFRVVTHEAVGKCEAVSEIRGTALGQGAKALVCKVKGN
CCCCCCCCHHHHHHHHHHCCCCCEEEEEEHHCCCCHHHHHHHHHHCCCCCEEEEEEEECC
GVNQHVLAILAADQQADLSQLASHIGGLRASLASPAEVDELTGCVFGAIPPFSFHPKLKL
CCCEEEEEEECCCCCCCHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHCCCCCCCCCCCEE
VADPLLFERFDEIAFNAGMLDKSVILKTADYLRIAQPELVNFRRTA
CCCHHHHHHHHHHHCCCCCCCHHHEECCCHHEECCCCCCCCEECCC
# PDB_Accession:
& Not Available
# Resolution:
Not Available
# Structure_CLASS:
Alpha Beta
# Quaternary_Structure:
Not Available
# Interacting_Partners:
Not Available
# Cofactors:
Not Available
# Metals_Ions:
Not Available
# Kcat_Value_[1/min]:
Not Available
# Specific_Activity_[micromol/min/mg]:
Not Available
# Km_Value_[mM]:
Not Available
# Substrates:
Not Available
# Products:
Not Available
# Specific_Reaction:
Not Available
# General_Reaction:
Not Available
# Inhibitor:
Not Available
# Priority:
9.4
# Status:
Selected, Cloned, Expressed, Soluble, Purified
# Availability:
RSGI
#END_ECARDFILE
#BEGIN_ECARDFILE
# Entry_ID:
CC2419A.1
# Accession_No.:
UA0002419
# Name:
Esterase yjfP
# Alternate_Names:
Not Available
# General_Function:
Member of S9C family; non-peptidase homologues (YjfP protein); alpha/beta-Hydrolases
# COG_Function:
General function prediction only (code R)
# COG_ID:
COG1073 Hydrolases of the alpha/beta superfamily (Evalue = 1e-142)
# Specific_Function:
Not Available
# Riley_Gene_Function:
putative hydrolase
# Riley_Cell_Function:
>>>
Not Available
# Gene_Ontology:
>>>
Function: catalytic activity
||
>>>
Process: Not Available
||
>>>
Component: Not Available
# Location:
Cytoplasm
# Blattner_Number:
b4190
# Gene_Sequence:
ATGATTGAAATAGAATCACGCGAGCTGGCAGATATTCCCGTTCTTCATGCTTATCCTGTCGGGCAAAAAG
ATACCCCGTTACCGTGCGTAATTTTTTATCACGGCTTTACTTCATCCAGTCTGGTGTATAGCTATTTTGC
CGTTGCGCTGGCGCAGGCTGGTTTGCGGGTGATCATGCCGGATGCGCCCGATCACGGTAGCCGTTTTAGT
GGTGACGCAGCGCGGCGGTTAAATCAATTCTGGCAAATCTTGCTACAAAGTATGCAGGAATTCACTACTT
TACGTGCGGCAATAGCCGAAGAAAACTGGCTGCTTGATGACCGTCTGGCAGTCGGTGGCGCGTCGATGGG
CGCGATGACGGCACTGGGGATTACCGCTCGCCACCCCACGGTGAGATGTACCGCCAGCATGATGGGATCG
GGCTATTTTACATCACTCGCCCGTTCACTGTTTCCACCGCTGATACCTGAAACGGCAGCACAGCAGAATG
AATTCAATAACATTGTCGCGCCACTGGCAGAGTGGGAAGCGACAAACCACCTGGAACAACTTAGTGACAG
ACCTCTACTGCTGTGGCATGGCCTCGACGATGACGTTGTGCCTGCCGACGAATCACTACGTTTGCAGCAG
GCCTTAAGCGAGACGGGACGGGATAAACTGCTAACCTGTTCATGGCAGCCAGGCGTGCGTCACCGCATTA
CGCCTGAGGCGTTAGATGCTGCCGTGACATTTTTCCGCCAGCATCTTTAA
# Upstream_100_bases:
CGAAAGCGTAACCCACATCTCAACATTATGAACTAATACCGCCAGCAGAAACTTGTGCTAAGGATTTCTT
CATGTCATACCAGACAAAAAGGAGAGACAG
# Blattner_No_Ontology:
Hypothetical, unclassified, unknown
# Gene_Position:
4414975-4415724 (Clockwise)
# Centisome_Position:
95.157
# Gene_Name:
yjfP
# GC_Content:
53.20%
# Metabolic_Importance:
Unknown
# Preceding_Gene:
yjfO
# Following_Gene:
yjfQ
# Operon_Status:
No
# Operon_Components:
None
# Paralogues:
None
# Copy Number:
Unknown
# RNA_Copy_No.:
Log phase (2max): 0.07
Stationary phase (2max): 0.13
Ref: Nature Biotech., 18, 1262-68, Dec. 2000 (PMID=11101804)
# Genbank_ID_(DNA):
G1790634
# Genbank_ID_(Protein):
AAC77147.1
# SWISS_PROT_(AC_&_ID):
$ YJFP_ECOLI (P39298)
# 2D_Gel_Image:
Not Available
# Other_Databases:
- ECOCYC: EG12490
- EcoGene: EG12490
- EMBL: U14003
- InterPro: IPR003140; IPR000379
- Pfam: PF02230
- PIR: S56415
# Pfam_Domain/Function:
None
# Homologues:
Not Available
# Similarity:
Not Available
# EC_Number:
3.1.-.-
# No._of_Amino_Acids:
249 (Translated Protein)
249 (Mature Protein)
# Molecular_Weight:
27589 27589
# Theoretical_pI:
5.07
# Theoretical_pI (Mature):
5.07
# Sequence:
// MIEIESRELADIPVLHAYPVGQKDTPLPCVIFYHGFTSSSLVYSYFAVALAQAGLRVIMP
// DAPDHGSRFSGDAARRLNQFWQILLQSMQEFTTLRAAIAEENWLLDDRLAVGGASMGAMT
// ALGITARHPTVRCTASMMGSGYFTSLARSLFPPLIPETAAQQNEFNNIVAPLAEWEATNH
// LEQLSDRPLLLWHGLDDDVVPADESLRLQQALSETGRDKLLTCSWQPGVRHRITPEALDA
// AVTFFRQHL
// /\
// MIEIESRELADIPVLHAYPVGQKDTPLPCVIFYHGFTSSSLVYSYFAVALAQAGLRVIMP
// DAPDHGSRFSGDAARRLNQFWQILLQSMQEFTTLRAAIAEENWLLDDRLAVGGASMGAMT
// ALGITARHPTVRCTASMMGSGYFTSLARSLFPPLIPETAAQQNEFNNIVAPLAEWEATNH
// LEQLSDRPLLLWHGLDDDVVPADESLRLQQALSETGRDKLLTCSWQPGVRHRITPEALDA
// AVTFFRQHL
# PROSITE_Motif:
Not Available
# Important_Sites:
Not Available
# Transmembrane:
Not Available
# Cys/Met_Content:
1.2 %Cys (Translated Protein)
2.8 %Met (Translated Protein)
4.0 %Cys+Met (Translated Protein)
1.2 %Cys (Mature Protein)
2.8 %Met (Mature Protein)
4.0 %Cys+Met (Mature Protein)
# Secondary_Structure:
>YJFP_ECOLI (Translated Protein)
MIEIESRELADIPVLHAYPVGQKDTPLPCVIFYHGFTSSSLVYSYFAVALAQAGLRVIMP
CEEEECCCCCCCCEEEEECCCCCCCCCEEEEEECCCCCCCCCCHHHHHHHHHCCCEEEEC
DAPDHGSRFSGDAARRLNQFWQILLQSMQEFTTLRAAIAEENWLLDDRLAVGGASMGAMT
CCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHEEEEECCCHHHHH
ALGITARHPTVRCTASMMGSGYFTSLARSLFPPLIPETAAQQNEFNNIVAPLAEWEATNH
HHHHHCCCCCEEEEEEECCHHHHHHHHHHCCCCCCCCCCEECCCCCCCCCCCCCCCHHHH
LEQLSDRPLLLWHGLDDDVVPADESLRLQQALSETGRDKLLTCSWQPGVRHRITPEALDA
HHHHHCCCEEEECCCCCCEECCCHHHHHHHHHHHCCCCEEEEEECCCCCCCCCCHHHHHH
AVTFFRQHL
HHHHHHCCC
/\
>YJFP_ECOLI (Mature Protein)
IEIESRELADIPVLHAYPVGQKDTPLPCVIFYHGFTSSSLVYSYFAVALAQAGLRVIMPD
EEEECCCCCCCCEEEEECCCCCCCCCEEEEEECCCCCCCCCCHHHHHHHHHCCCEEEECC
APDHGSRFSGDAARRLNQFWQILLQSMQEFTTLRAAIAEENWLLDDRLAVGGASMGAMTA
CCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHEEEEECCCHHHHHH
LGITARHPTVRCTASMMGSGYFTSLARSLFPPLIPETAAQQNEFNNIVAPLAEWEATNHL
HHHHCCCCCEEEEEEECCHHHHHHHHHHCCCCCCCCCCEECCCCCCCCCCCCCCCHHHHH
EQLSDRPLLLWHGLDDDVVPADESLRLQQALSETGRDKLLTCSWQPGVRHRITPEALDAA
HHHHCCCEEEECCCCCCEECCCHHHHHHHHHHHCCCCEEEEEECCCCCCCCCCHHHHHHH
VTFFRQHL
HHHHHCCC
# PDB_Accession:
& Not Available
# Resolution:
Not Available
# Structure_CLASS:
Alpha Beta
# Quaternary_Structure:
Not Available
# Interacting_Partners:
Not Available
# Cofactors:
Not Available
# Metals_Ions:
Not Available
# Kcat_Value_[1/min]:
Not Available
# Specific_Activity_[micromol/min/mg]:
Not Available
# Km_Value_[mM]:
Not Available
# Substrates:
Not Available
# Products:
Not Available
# Specific_Reaction:
Not Available
# General_Reaction:
Not Available
# Inhibitor:
Not Available
# Priority:
9.2
# Status:
Selected, Cloned, Expressed, Soluble, Purified, Work Stopped
# Availability:
NYSGXRC
#END_ECARDFILE
#BEGIN_ECARDFILE
# Entry_ID:
CC1459A.1
# Accession_No.:
UA0001459
# Name:
Hypothetical protein ydhA
# Alternate_Names:
Not Available
# General_Function:
Not Available
# COG_Function:
General function prediction only (code R)
# COG_ID:
COG3895 Predicted periplasmic protein (Evalue = 1e-49)
# Specific_Function:
Not Available
# Riley_Gene_Function:
predicted lipoprotein
# Riley_Cell_Function:
>>>
Not Available
# Gene_Ontology:
>>>
Function: Not Available
||
>>>
Process: Not Available
||
>>>
Component: Not Available
# Location:
Cytoplasm
# Blattner_Number:
b1639
# Gene_Sequence:
ATGACTATGAAAAAACTGTTAATTATCATTTTGCCGGTCCTTCTCTCCGGCTGTAGCGCCTTTAATCAGC
TGGTTGAGCGCATGCAAACCGATACGCTGGAATACCAGTGTGATGAAAAACCGTTGACGGTCAAACTGAA
TAATCCGCGCCAGGAGGTCAGTTTTGTTTACGATAATCAACTACTGCATCTCAAACAGGGCATTTCAGCC
TCTGGCGCGCGTTACACTGACGGAATCTATGTTTTCTGGTCGAAAGGCGATGAAGCGACTGTCTATAAAC
GCGACCGCATCGTCTTGAATAACTGTCAGTTACAAAATCCACAGCGTTGA
# Upstream_100_bases:
TGATATCAGAGTTAACTGAATTTTTCTTACCGCGTCTGCCGTTACACTTGGAACGTTAGGGAGGGCGTAT
TGCCCTCCAGACCAGGAAAGTCTTCGGGAT
# Blattner_No_Ontology:
Hypothetical, unclassified, unknown
# Gene_Position:
1716090-1716419 (Counter Clockwise)
# Centisome_Position:
36.994
# Gene_Name:
ydhA
# GC_Content:
45.76%
# Metabolic_Importance:
Unknown
# Preceding_Gene:
pdxH
# Following_Gene:
ydhH
# Operon_Status:
No
# Operon_Components:
None
# Paralogues:
None
# Copy Number:
Unknown
# RNA_Copy_No.:
Log phase (2max): 0.06
Stationary phase (2max): 0.1
Ref: Nature Biotech., 18, 1262-68, Dec. 2000 (PMID=11101804)
# Genbank_ID_(DNA):
G1787927
# Genbank_ID_(Protein):
AAC74711.1
# SWISS_PROT_(AC_&_ID):
$ YDHA_ECOLI (P28224)
# 2D_Gel_Image:
Not Available
# Other_Databases:
- ECOCYC: EG11488
- EcoGene: EG11488
- EMBL: U00096
- PIR: A43261
# Pfam_Domain/Function:
None
# Homologues:
Not Available
# Similarity:
To Y.enterocolitica ORF4 (AC P28837).
# EC_Number:
Not Available
# No._of_Amino_Acids:
109 (Translated Protein)
87 (Mature Protein)
# Molecular_Weight:
12568 10180
# Theoretical_pI:
8.46
# Theoretical_pI (Mature):
7.25
# Sequence:
// MTMKKLLIIILPVLLSGCSAFNQLVERMQTDTLEYQCDEKPLTVKLNNPRQEVSFVYDNQ
// LLHLKQGISASGARYTDGIYVFWSKGDEATVYKRDRIVLNNCQLQNPQR
// /\
// QLVERMQTDTLEYQCDEKPLTVKLNNPRQEVSFVYDNQLLHLKQGISASGARYTDGIYVF
// WSKGDEATVYKRDRIVLNNCQLQNPQR
# PROSITE_Motif:
Not Available
# Important_Sites:
Not Available
# Transmembrane:
Not Available
# Cys/Met_Content:
2.8 %Cys (Translated Protein)
2.8 %Met (Translated Protein)
5.5 %Cys+Met (Translated Protein)
2.3 %Cys (Mature Protein)
1.1 %Met (Mature Protein)
3.4 %Cys+Met (Mature Protein)
# Secondary_Structure:
>YDHA_ECOLI (Translated Protein)
MTMKKLLIIILPVLLSGCSAFNQLVERMQTDTLEYQCDEKPLTVKLNNPRQEVSFVYDNQ
CCHHHHHHHHHHHHHHHCCCCCCCCEECCEEEEEEEECCEEEEEEEECCCCEEEEECCCC
LLHLKQGISASGARYTDGIYVFWSKGDEATVYKRDRIVLNNCQLQNPQR
EEEECCEEECCCCCCCCCEEEEECCCCEEEEECCCEEEEECCCCCCCCC
/\
>YDHA_ECOLI (Mature Protein)
TMKKLLIIILPVLLSGCSAFNQLVERMQTDTLEYQCDEKPLTVKLNNPRQEVSFVYDNQL
CHHHHHHHHHHHHHHHCCCCCCCCEECCEEEEEEEECCEEEEEEEECCCCEEEEECCCCE
LHLKQGISASGARYTDGIYVFWSKGDEATVYKRDRIVLNNCQLQNPQR
EEECCEEECCCCCCCCCEEEEECCCCEEEEECCCEEEEECCCCCCCCC
# PDB_Accession:
& Not Available
# Resolution:
Not Available
# Structure_CLASS:
Alpha Beta
# Quaternary_Structure:
Not Available
# Interacting_Partners:
Not Available
# Cofactors:
Not Available
# Metals_Ions:
Not Available
# Kcat_Value_[1/min]:
Not Available
# Specific_Activity_[micromol/min/mg]:
Not Available
# Km_Value_[mM]:
Not Available
# Substrates:
Not Available
# Products:
Not Available
# Specific_Reaction:
Not Available
# General_Reaction:
Not Available
# Inhibitor:
Not Available
# Priority:
9.4
# Status:
Selected
# Availability:
Northeast Structural Genomics Consortium
#END_ECARDFILE
#BEGIN_ECARDFILE
# Entry_ID:
CC3052A.1
# Accession_No.:
UA0003052
# Name:
Inner membrane protein ybhN
# Alternate_Names:
Not Available
# General_Function:
Not Available
# COG_Function:
Function unknown (code S)
# COG_ID:
COG0392 Predicted integral membrane protein (Evalue = 0.0)
# Specific_Function:
Not Available
# Riley_Gene_Function:
putative negative regulator; conserved inner membrane protein
# Riley_Cell_Function:
>>>
Regulation
Type of regulation
Regulation level unknown
||
>>>
Cell structure
Membrane
# Gene_Ontology:
>>>
Function: Not Available
||
>>>
Process: Not Available
||
>>>
Component: Not Available
# Location:
Integral Membrane Protein
# Blattner_Number:
b0788
# Gene_Sequence:
ATGAGTAAATCACACCCGCGCTGGCGCTTAGCAAAGAAGATCCTCACCTGGCTGTTTTTTATCGCGGTGA
TTGTGTTGCTGGTGGTCTACGCCAAAAAAGTGGACTGGGAAGAGGTCTGGAAGGTCATCCGCGACTACAA
TCGCGTTGCGCTGCTTAGTGCGGTCGGGCTGGTGGTCGTCAGCTATCTGATTTACGGCTGCTATGACCTG
CTCGCCCGCTTTTACTGCGGTCACAAACTGGCGAAGCGCCAGGTGATGCTGGTGTCGTTTATCTGCTACG
CCTTCAACCTGACGCTCAGTACCTGGGTCGGCGGCATTGGTATGCGCTATCGTTTGTACTCTCGTCTGGG
GTTGCCCGGTAGCACTATTACGCGGATTTTCTCGCTCAGTATTACCACCAACTGGCTGGGCTACATTTTA
CTGGCAGGGATTATCTTTACCGCAGGCGTGGTGGAGTTGCCGGATCACTGGTATGTCGATCAAACTACGC
TGCGTATTCTCGGCATTGGCTTACTGATGATTATCGCGGTTTATTTGTGGTTTTGCGCTTTCGCGAAGCA
CCGCCATATGACCATCAAAGGGCAAAAGCTGGTGCTGCCTTCATGGAAATTCGCCCTCGCTCAGATGCTG
ATTTCCAGCGTTAACTGGATGGTAATGGGGGCGATTATCTGGCTGTTACTTGGTCAAAGCGTGAACTATT
TCTTTGTACTGGGCGTGTTACTGGTTAGTAGTATTGCTGGCGTCATCGTGCATATTCCGGCGGGGATCGG
TGTGCTGGAAGCGGTGTTTATCGCACTACTGGCTGGGGAGCATACCTCCAAAGGTACAATTATCGCCGCC
CTACTCGCTTACCGTGTGCTGTATTACTTTATCCCACTGCTGCTGGCGCTGATCTGTTACCTGTTGCTGG
AAAGCCAGGCGAAGAAGCTACGGGCGAAAAATGAAGCGGCGATGTGA
# Upstream_100_bases:
CGGCACACACGCCACGTCTGGCGCAGGTTGATCCGCCCGCACAACCGACAATGGAAACGCAGGATCGGGT
AGAAACTGAAAACACGGGGGTAAAACCCTG
# Blattner_No_Ontology:
Hypothetical, unclassified, unknown
# Gene_Position:
820765-821721 (Counter Clockwise)
# Centisome_Position:
17.711
# Gene_Name:
ybhN
# GC_Content:
52.35%
# Metabolic_Importance:
Non_Essential
# Preceding_Gene:
ybhM
# Following_Gene:
ybhO
# Operon_Status:
Yes
# Operon_Components:
ybhN_ybhO_ybhP Ref: RegulonDB http://kinich.cifn.unam.mx:8850/db/regulondb_cgi.query_simple?v_organism=ECK12&v_table=3&v_name=ybhN
# Paralogues:
None
# Copy Number:
10-20 Molecules/Cell
# RNA_Copy_No.:
Log phase (2max): 0.09
Stationary phase (2max): 0.1
Ref: Nature Biotech., 18, 1262-68, Dec. 2000 (PMID=11101804)
# Genbank_ID_(DNA):
G1787006
# Genbank_ID_(Protein):
AAC73875.1
# SWISS_PROT_(AC_&_ID):
$ YBHN_ECOLI (P75770)
# 2D_Gel_Image:
Not Available
# Other_Databases:
- ECOCYC: EG13670
- EcoGene: EG13670
- EMBL: U00096
- PIR: D64815
# Pfam_Domain/Function:
None
# Homologues:
Not Available
# Similarity:
To Synechocystis PCC 6803 slr0712.
# EC_Number:
Not Available
# No._of_Amino_Acids:
318 (Translated Protein)
287 (Mature Protein)
# Molecular_Weight:
35861 32178
# Theoretical_pI:
10.16
# Theoretical_pI (Mature):
9.86
# Sequence:
// MSKSHPRWRLAKKILTWLFFIAVIVLLVVYAKKVDWEEVWKVIRDYNRVALLSAVGLVVV
// SYLIYGCYDLLARFYCGHKLAKRQVMLVSFICYAFNLTLSTWVGGIGMRYRLYSRLGLPG
// STITRIFSLSITTNWLGYILLAGIIFTAGVVELPDHWYVDQTTLRILGIGLLMIIAVYLW
// FCAFAKHRHMTIKGQKLVLPSWKFALAQMLISSVNWMVMGAIIWLLLGQSVNYFFVLGVL
// LVSSIAGVIVHIPAGIGVLEAVFIALLAGEHTSKGTIIAALLAYRVLYYFIPLLLALICY
// LLLESQAKKLRAKNEAAM
// /\
// KKVDWEEVWKVIRDYNRVALLSAVGLVVVSYLIYGCYDLLARFYCGHKLAKRQVMLVSFI
// CYAFNLTLSTWVGGIGMRYRLYSRLGLPGSTITRIFSLSITTNWLGYILLAGIIFTAGVV
// ELPDHWYVDQTTLRILGIGLLMIIAVYLWFCAFAKHRHMTIKGQKLVLPSWKFALAQMLI
// SSVNWMVMGAIIWLLLGQSVNYFFVLGVLLVSSIAGVIVHIPAGIGVLEAVFIALLAGEH
// TSKGTIIAALLAYRVLYYFIPLLLALICYLLLESQAKKLRAKNEAAM
# PROSITE_Motif:
Not Available
# Important_Sites:
Not Available
# Transmembrane:
Transmembrane 14 34 Potential
Transmembrane 51 71 Potential
Transmembrane 86 106 Potential
Transmembrane 126 146 Potential
Transmembrane 166 186 Potential
Transmembrane 206 226 Potential
Transmembrane 234 254 Potential
Transmembrane 255 275 Potential
Transmembrane 278 298 Potential
# Cys/Met_Content:
1.6 %Cys (Translated Protein)
2.8 %Met (Translated Protein)
4.4 %Cys+Met (Translated Protein)
1.7 %Cys (Mature Protein)
2.8 %Met (Mature Protein)
4.5 %Cys+Met (Mature Protein)
# Secondary_Structure:
>YBHN_ECOLI (Translated Protein)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HHCCCHHHHHHHHHCCCCCCCCC
/\
>YBHN_ECOLI (Mature Protein)
SKSHPRWRLAKKILTWLFFIAVIVLLVVYAKKVDWEEVWKVIRDYNRVALLSAVGLVVVS
CCCCHHHHHCCCHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHCCCCCCCHHHHHHHHHHH
SYLIYGCYDLLARFYCGHKLAKRQVMLVSFICYAFNLTLSTWVGGIGMRYRLYSRLGLPG
HHHHHHHHHHCCCHHHCCCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHCCCCH
GSTITRIFSLSITTNWLGYILLAGIIFTAGVVELPDHWYVDQTTLRILGIGLLMIIAVYL
HHHCCCHHHHHHHHHHHHHHHHHHHHCCCEEEECCCCCEECCCCCCHHHHHHHHHHHHHH
LWFCAFAKHRHMTIKGQKLVLPSWKFALAQMLISSVNWMVMGAIIWLLLGQSVNYFFVLG
HHHHHHHCCCCCCCCCEEEECCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHH
GVLLVSSIAGVIVHIPAGIGVLEAVFIALLAGEHTSKGTIIAALLAYRVLYYFIPLLLAL
HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHH
LICYLLLESQAKKLRAKNEAAM
HCCCHHHHHHHHHCCCCCCCCC
# PDB_Accession:
& Not Available
# Resolution:
Not Available
# Structure_CLASS:
Mainly Alpha
# Quaternary_Structure:
Not Available
# Interacting_Partners:
1) DNA,
# Cofactors:
Not Available
# Metals_Ions:
Not Available
# Kcat_Value_[1/min]:
Not Available
# Specific_Activity_[micromol/min/mg]:
Not Available
# Km_Value_[mM]:
Not Available
# Substrates:
Not Available
# Products:
Not Available
# Specific_Reaction:
Not Available
# General_Reaction:
Not Available
# Inhibitor:
Not Available
# Priority:
5.9
# Status:
Not Available
# Availability:
Not Available
#END_ECARDFILE
#BEGIN_ECARDFILE
# Entry_ID:
CC2314A.2
# Accession_No.:
UA0002314
# Name:
Glutamate/aspartate periplasmic-binding protein precursor
# Alternate_Names:
Not Available
# General_Function:
Transport and binding proteins; Member of the ATP-binding Cassette (ABC) Superfamily; Periplasmic binding protein-like II
# COG_Function:
Amino acid transport and metabolism (code E)
# COG_ID:
COG0834 ABC-type amino acid transport/signal transduction systems, periplasmic component/domain (Evalue = 1e-171)
# Specific_Function:
Part of the binding-protein-dependent transport system for glutamate and aspartate. Binds to both aspartate and glutamate.
# Riley_Gene_Function:
glutamate and aspartate transporter subunit; periplasmic-binding component of ABC superfamily
# Riley_Cell_Function:
>>>
Metabolism
Building block biosynthesis
Amino acids
Glutamate
||
>>>
Transport
Primary Active Transporters
Pyrophosphate Bond (ATP; GTP; P2) Hydrolysis-driven Active Transporters
The ATP-binding Cassette (ABC) Superfamily + ABC-type Uptake Permeases
periplasmic binding component
||
>>>
Transport
substrate
glutamate/aspartate
||
>>>
Location of gene products
Periplasmic space
# Gene_Ontology:
>>>
Function: transporter activity
||
>>>
Function: transporter activity
||
>>>
Process: physiological process
Process: cellular physiological process
Process: transport
||
>>>
Process: localization
Process: establishment of localization
Process: transport
||
>>>
Process: cellular process
Process: cellular physiological process
Process: transport
Process: physiological process
Process: cellular physiological process
Process: transport
||
>>>
Process: localization
Process: establishment of localization
Process: transport
||
>>>
Process: cellular process
Process: cellular physiological process
Process: transport
||
>>>
Component: cell
Component: external encapsulating structure
Component: cell envelope
Component: periplasmic space (sensu Proteobacteria)
||
>>>
Component: periplasmic space
Component: periplasmic space (sensu Proteobacteria)
||
>>>
Component: envelope
Component: cell envelope
Component: periplasmic space (sensu Proteobacteria)
# Location:
Periplasmic Protein
# Blattner_Number:
b0655
# Gene_Sequence:
ATGCAATTACGTAAACCTGCCACAGCAATCCTCGCCCTGGCGCTTTCCGCAGGACTGGCACAGGCAGATG
ACGCCGCCCCGGCAGCGGGCAGTACTCTGGACAAAATCGCCAAAAACGGTGTGATTGTCGTCGGTCACCG
TGAATCTTCAGTGCCTTTCTCTTATTACGACAATCAGCAAAAAGTGGTGGGTTACTCGCAGGATTACTCC
AACGCCATTGTTGAAGCAGTGAAAAAGAAACTCAACAAACCGGACTTGCAGGTAAAACTGATTCCGATTA
CCTCACAAAACCGTATTCCACTGCTGCAAAACGGCACTTTCGATTTTGAATGTGGTTCTACCACCAACAA
CGTCGAACGCCAAAAACAGGCGGCTTTCTCTGACACTATTTTCGTGGTCGGTACGCGCCTGTTGACCAAA
AAGGGTGGCGATATCAAAGATTTTGCCAACCTGAAAGACAAAGCCGTAGTCGTCACTTCCGGCACTACCT
CTGAAGTTTTGCTCAACAAACTGAATGAAGAGCAAAAAATGAATATGCGCATCATCAGCGCCAAAGATCA
CGGTGACTCTTTCCGCACCCTGGAAAGCGGTCGTGCCGTTGCCTTTATGATGGATGACGCTCTGCTGGCC
GGTGAACGTGCGAAAGCGAAGAAACCAGACAACTGGGAAATCGTCGGCAAGCCGCAGTCTCAGGAGGCCT
ACGGTTGTATGTTGCGTAAAGATGATCCGCAGTTCAAAAAGCTGATGGATGACACCATCGCTCAGGTGCA
GACCTCCGGTGAAGCGGAAAAATGGTTTGATAAGTGGTTCAAAAATCCAATTCCGCCGAAAAACCTGAAC
ATGAATTTCGAACTGTCAGACGAAATGAAAGCACTGTTCAAAGAACCGAATGACAAGGCACTGAACTAA
# Upstream_100_bases:
ACAGGCACAACACTGCACAATAAAGTTGCAGACGATAACAACACAAACACTCACAACGGGTATCCATGCG
TTCTTAACGCAGAAGATAAAGGAGTTGGAT
# Blattner_No_Ontology:
Putative transport proteins
# Gene_Position:
686062-686970 (Counter Clockwise)
# Centisome_Position:
14.806
# Gene_Name:
gltI
# GC_Content:
48.73%
# Metabolic_Importance:
Unknown
# Preceding_Gene:
gltJ
# Following_Gene:
lnt
# Operon_Status:
No
# Operon_Components:
None
# Paralogues:
b1920 (fliY) 25; b2310 (argT) 24; b2309 (hisJ) 23; b3268 (yhdW) 24; b0811 (glnH) 26; b0860 (artJ) 22;
# Copy Number:
Unknown
# RNA_Copy_No.:
Log phase (2max): 0.06
Stationary phase (2max): 0.17
Ref: Nature Biotech., 18, 1262-68, Dec. 2000 (PMID=11101804)
# Genbank_ID_(DNA):
G1786876
# Genbank_ID_(Protein):
AAC73756.1
# SWISS_PROT_(AC_&_ID):
$ GLTI_ECOLI (P37902)
# 2D_Gel_Image:
http://ca.expasy.org/cgi-bin/ch2d-compute-map?ECOLI,P37902
# Other_Databases:
- 2DPAGE: P37902
- ECOCYC: EG12700
- EcoGene: EG12700
- EMBL: U00096
- InterPro: IPR001311; IPR001638
- Pfam: PF00497
- PIR: E64800
- PROSITE: PS01039
# Pfam_Domain/Function:
PF00497 Bacterial extracellular solute-binding proteins, family 3
# Homologues:
Not Available
# Similarity:
Belongs to the bacterial solute-binding protein 3 family.
# EC_Number:
Not Available
# No._of_Amino_Acids:
302 (Translated Protein)
280 (Mature Protein)
# Molecular_Weight:
33420 31230
# Theoretical_pI:
8.97
# Theoretical_pI (Mature):
8.17
# Sequence:
// MQLRKPATAILALALSAGLAQADDAAPAAGSTLDKIAKNGVIVVGHRESSVPFSYYDNQQ
// KVVGYSQDYSNAIVEAVKKKLNKPDLQVKLIPITSQNRIPLLQNGTFDFECGSTTNNVER
// QKQAAFSDTIFVVGTRLLTKKGGDIKDFANLKDKAVVVTSGTTSEVLLNKLNEEQKMNMR
// IISAKDHGDSFRTLESGRAVAFMMDDALLAGERAKAKKPDNWEIVGKPQSQEAYGCMLRK
// DDPQFKKLMDDTIAQVQTSGEAEKWFDKWFKNPIPPKNLNMNFELSDEMKALFKEPNDKA
// LN
// /\
// DDAAPAAGSTLDKIAKNGVIVVGHRESSVPFSYYDNQQKVVGYSQDYSNAIVEAVKKKLN
// KPDLQVKLIPITSQNRIPLLQNGTFDFECGSTTNNVERQKQAAFSDTIFVVGTRLLTKKG
// GDIKDFANLKDKAVVVTSGTTSEVLLNKLNEEQKMNMRIISAKDHGDSFRTLESGRAVAF
// MMDDALLAGERAKAKKPDNWEIVGKPQSQEAYGCMLRKDDPQFKKLMDDTIAQVQTSGEA
// EKWFDKWFKNPIPPKNLNMNFELSDEMKALFKEPNDKALN
# PROSITE_Motif:
SBP_BACTERIAL_3; PATTERN. PS01039; Bacterial extracellular solute-binding proteins, family 3 signature. G-[FYIL]-[DE]-[LIVMT]-[DE]-[LIVMF]-x(3)-[LIVMA]-[VAGC]-x(2)-[LIVMAGN]. PDOC00798; //
# Important_Sites:
Signal Chain 1 22
# Transmembrane:
Not Available
# Cys/Met_Content:
0.7 %Cys (Translated Protein)
3.0 %Met (Translated Protein)
3.6 %Cys+Met (Translated Protein)
0.7 %Cys (Mature Protein)
2.9 %Met (Mature Protein)
3.6 %Cys+Met (Mature Protein)
# Secondary_Structure:
>GLTI_ECOLI (Translated Protein)
MQLRKPATAILALALSAGLAQADDAAPAAGSTLDKIAKNGVIVVGHRESSVPFSYYDNQQ
CCHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHCCEEEEEECCCCCCCEEECCCC
KVVGYSQDYSNAIVEAVKKKLNKPDLQVKLIPITSQNRIPLLQNGTFDFECGSTTNNVER
CEEEECHHHHHHHHHHHHHHCCCCCEEEEEEECCHHHHHHHHHCCCEEEEECCCCCCHHH
QKQAAFSDTIFVVGTRLLTKKGGDIKDFANLKDKAVVVTSGTTSEVLLNKLNEEQKMNMR
HHHCCCCCCEEECCEEEEEECCCCCCCHHHHCCCEEEEECCCCHHHHHHHHHHHHCCCCE
IISAKDHGDSFRTLESGRAVAFMMDDALLAGERAKAKKPDNWEIVGKPQSQEAYGCMLRK
EEECCCHHHHHHHHHCCCEEEEECCHHHHHHHHHHCCCCCCEEECCCCCCCCCEEEEECC
DDPQFKKLMDDTIAQVQTSGEAEKWFDKWFKNPIPPKNLNMNFELSDEMKALFKEPNDKA
CCHHHHHHHHHHHHHHHHCCHHHHHHHHHCCCCCCCCCCCCCCCHHHHHHHHHHCCCCCC
LN
CC
/\
>GLTI_ECOLI (Mature Protein)
DDAAPAAGSTLDKIAKNGVIVVGHRESSVPFSYYDNQQKVVGYSQDYSNAIVEAVKKKLN
CCCCCCCCCCHHHHHHCCEEEEEECCCCCCCEEECCCCCEEEECHHHHHHHHHHHHHHCC
KPDLQVKLIPITSQNRIPLLQNGTFDFECGSTTNNVERQKQAAFSDTIFVVGTRLLTKKG
CCCEEEEEEECCHHHHHHHHHCCCEEEEECCCCCCHHHHHHCCCCCCEEECCEEEEEECC
GDIKDFANLKDKAVVVTSGTTSEVLLNKLNEEQKMNMRIISAKDHGDSFRTLESGRAVAF
CCCCCHHHHCCCEEEEECCCCHHHHHHHHHHHHCCCCEEEECCCHHHHHHHHHCCCEEEE
MMDDALLAGERAKAKKPDNWEIVGKPQSQEAYGCMLRKDDPQFKKLMDDTIAQVQTSGEA
ECCHHHHHHHHHHCCCCCCEEECCCCCCCCCEEEEECCCCHHHHHHHHHHHHHHHHCCHH
EKWFDKWFKNPIPPKNLNMNFELSDEMKALFKEPNDKALN
HHHHHHHCCCCCCCCCCCCCCCHHHHHHHHHHCCCCCCCC
# PDB_Accession:
& Not Available
# Resolution:
Not Available
# Structure_CLASS:
Alpha Beta
# Quaternary_Structure:
Not Available
# Interacting_Partners:
Unknown
# Cofactors:
Not Available
# Metals_Ions:
Not Available
# Kcat_Value_[1/min]:
Not Available
# Specific_Activity_[micromol/min/mg]:
Not Available
# Km_Value_[mM]:
Not Available
# Substrates:
Not Available
# Products:
Not Available
# Specific_Reaction:
Not Available
# General_Reaction:
Not Available
# Inhibitor:
Not Available
# Priority:
6.4
# Status:
Not Available
# Availability:
Not Available
#END_ECARDFILE
#BEGIN_ECARDFILE
# Entry_ID:
CC1958A.1
# Accession_No.:
UA0001958
# Name:
Regulatory protein recX
# Alternate_Names:
Protein oraA
# General_Function:
Unknown
# COG_Function:
General function prediction only (code R)
# COG_ID:
COG2137 Uncharacterized protein conserved in bacteria (Evalue = 3e-93)
# Specific_Function:
Modulates recA activity through direct physical interaction. Can inhibit both recA recombinase and coprotease activities. May have a regulatory role during the SOS response. Inhibits DNA strand exchange in vitro. Gene oraA is regulated by transcriptional attenuation.
# Riley_Gene_Function:
regulatory protein, inhibitor of RecA recombinase and coprotease activities
# Riley_Cell_Function:
>>>
Regulation
Type of regulation
Regulation level unknown
||
>>>
Cell processes
SOS response
# Gene_Ontology:
>>>
Function: Not Available
||
>>>
Process: physiological process
Process: metabolism
Process: regulation of metabolism
Process: regulation of cellular metabolism
Process: regulation of nucleobase, nucleoside, nucleotide and nucleic acid metabolism
Process: regulation of DNA metabolism
Process: regulation of DNA repair
||
>>>
Process: macromolecule metabolism
Process: biopolymer metabolism
Process: DNA metabolism
Process: DNA repair
Process: regulation of DNA repair
||
>>>
Process: regulation of DNA metabolism
Process: regulation of DNA repair
||
>>>
Process: cellular metabolism
Process: nucleobase, nucleoside, nucleotide and nucleic acid metabolism
Process: DNA metabolism
Process: DNA repair
Process: regulation of DNA repair
||
>>>
Process: regulation of DNA metabolism
Process: regulation of DNA repair
||
>>>
Process: regulation of nucleobase, nucleoside, nucleotide and nucleic acid metabolism
Process: regulation of DNA metabolism
Process: regulation of DNA repair
||
>>>
Process: regulation of cellular metabolism
Process: regulation of nucleobase, nucleoside, nucleotide and nucleic acid metabolism
Process: regulation of DNA metabolism
Process: regulation of DNA repair
||
>>>
Process: primary metabolism
Process: nucleobase, nucleoside, nucleotide and nucleic acid metabolism
Process: DNA metabolism
Process: DNA repair
Process: regulation of DNA repair
||
>>>
Process: regulation of DNA metabolism
Process: regulation of DNA repair
||
>>>
Process: regulation of nucleobase, nucleoside, nucleotide and nucleic acid metabolism
Process: regulation of DNA metabolism
Process: regulation of DNA repair
||
>>>
Process: regulation of physiological process
Process: regulation of metabolism
Process: regulation of cellular metabolism
Process: regulation of nucleobase, nucleoside, nucleotide and nucleic acid metabolism
Process: regulation of DNA metabolism
Process: regulation of DNA repair
||
>>>
Process: regulation of cellular physiological process
Process: regulation of cellular metabolism
Process: regulation of nucleobase, nucleoside, nucleotide and nucleic acid metabolism
Process: regulation of DNA metabolism
Process: regulation of DNA repair
||
>>>
Process: cellular physiological process
Process: cellular metabolism
Process: nucleobase, nucleoside, nucleotide and nucleic acid metabolism
Process: DNA metabolism
Process: DNA repair
Process: regulation of DNA repair
||
>>>
Process: regulation of DNA metabolism
Process: regulation of DNA repair
||
>>>
Process: regulation of nucleobase, nucleoside, nucleotide and nucleic acid metabolism
Process: regulation of DNA metabolism
Process: regulation of DNA repair
||
>>>
Process: regulation of cellular metabolism
Process: regulation of nucleobase, nucleoside, nucleotide and nucleic acid metabolism
Process: regulation of DNA metabolism
Process: regulation of DNA repair
||
>>>
Process: regulation of cellular physiological process
Process: regulation of cellular metabolism
Process: regulation of nucleobase, nucleoside, nucleotide and nucleic acid metabolism
Process: regulation of DNA metabolism
Process: regulation of DNA repair
||
>>>
Process: cellular process
Process: regulation of cellular process
Process: regulation of cellular physiological process
Process: regulation of cellular metabolism
Process: regulation of nucleobase, nucleoside, nucleotide and nucleic acid metabolism
Process: regulation of DNA metabolism
Process: regulation of DNA repair
||
>>>
Process: cellular physiological process
Process: cellular metabolism
Process: nucleobase, nucleoside, nucleotide and nucleic acid metabolism
Process: DNA metabolism
Process: DNA repair
Process: regulation of DNA repair
||
>>>
Process: regulation of DNA metabolism
Process: regulation of DNA repair
||
>>>
Process: regulation of nucleobase, nucleoside, nucleotide and nucleic acid metabolism
Process: regulation of DNA metabolism
Process: regulation of DNA repair
||
>>>
Process: regulation of cellular metabolism
Process: regulation of nucleobase, nucleoside, nucleotide and nucleic acid metabolism
Process: regulation of DNA metabolism
Process: regulation of DNA repair
||
>>>
Process: regulation of cellular physiological process
Process: regulation of cellular metabolism
Process: regulation of nucleobase, nucleoside, nucleotide and nucleic acid metabolism
Process: regulation of DNA metabolism
Process: regulation of DNA repair
||
>>>
Process: regulation of biological process
Process: regulation of physiological process
Process: regulation of metabolism
Process: regulation of cellular metabolism
Process: regulation of nucleobase, nucleoside, nucleotide and nucleic acid metabolism
Process: regulation of DNA metabolism
Process: regulation of DNA repair
||
>>>
Process: regulation of cellular physiological process
Process: regulation of cellular metabolism
Process: regulation of nucleobase, nucleoside, nucleotide and nucleic acid metabolism
Process: regulation of DNA metabolism
Process: regulation of DNA repair
||
>>>
Process: regulation of cellular process
Process: regulation of cellular physiological process
Process: regulation of cellular metabolism
Process: regulation of nucleobase, nucleoside, nucleotide and nucleic acid metabolism
Process: regulation of DNA metabolism
Process: regulation of DNA repair
||
>>>
Process: response to stimulus
Process: response to stress
Process: response to DNA damage stimulus
Process: DNA repair
Process: regulation of DNA repair
||
>>>
Process: response to endogenous stimulus
Process: response to DNA damage stimulus
Process: DNA repair
Process: regulation of DNA repair
||
>>>
Component: Not Available
# Location:
Cytoplasm
# Blattner_Number:
b2698
# Gene_Sequence:
ATGACAGAATCAACATCCCGTCGCCCGGCATATGCTCGCCTGTTGGATCGTGCGGTACGCATTCTGGCGG
TGCGCGATCACAGTGAGCAAGAACTGCGACGTAAACTCGCGGCACCGATTATGGGCAAAAATGGCCCAGA
AGAGATTGATGCTACGGCAGAAGATTACGAGCGCGTTATTGCCTGGTGCCATGAACATGGCTATCTCGAT
GACAGCCGATTTGTTGCGCGCTTTATCGCCAGCCGTAGCCGCAAAGGTTATGGACCTGCGCGTATTCGCC
AGGAACTGAATCAGAAAGGTATTTCCCGCGAAGCGACAGAAAAAGCGATGCGTGAATGTGACATCGACTG
GTGCGCACTGGCGCGCGATCAGGCGACGCGAAAATATGGCGAACCTTTGCCAACTGTCTTTTCAGAAAAA
GTTAAGATCCAGCGTTTTCTGCTCTATCGTGGCTATCTGATGGAAGATATCCAGGAGATTTGGCGAAATT
TTGCCGACTGA
# Upstream_100_bases:
AAGGCGTAGCAGAAACTAACGAAGATTTTTAATCGTCTTGTTTGATACACAAGGGTCGCATCTGCGGCCC
TTTTGCTTTTTTAAGTTGTAAGGATATGCC
# Blattner_No_Ontology:
Putative regulatory proteins
# Gene_Position:
2820161-2820661 (Counter Clockwise)
# Centisome_Position:
60.794
# Gene_Name:
recX or oraA
# GC_Content:
51.90%
# Metabolic_Importance:
Non_Essential
# Preceding_Gene:
alaS
# Following_Gene:
recA
# Operon_Status:
No
# Operon_Components:
None
# Paralogues:
None
# Copy Number:
Unknown
# RNA_Copy_No.:
Log phase (2max): 0.07
Stationary phase (2max): 0.11
Ref: Nature Biotech., 18, 1262-68, Dec. 2000 (PMID=11101804)
# Genbank_ID_(DNA):
G1789050
# Genbank_ID_(Protein):
AAC75740.1
# SWISS_PROT_(AC_&_ID):
$ RECX_ECOLI (P33596)
# 2D_Gel_Image:
Not Available
# Other_Databases:
- ECOCYC: EG12080
- EcoGene: EG12080
- EMBL: L25853
- InterPro: IPR003783
- Pfam: PF02631
- PIR: F65049
# Pfam_Domain/Function:
PF02631 RecX family;
# Homologues:
Not Available
# Similarity:
Belongs to the recX family.
# EC_Number:
Not Available
# No._of_Amino_Acids:
166 (Translated Protein)
165 (Mature Protein)
# Molecular_Weight:
19424 19293
# Theoretical_pI:
8.80
# Theoretical_pI (Mature):
8.80
# Sequence:
// MTESTSRRPAYARLLDRAVRILAVRDHSEQELRRKLAAPIMGKNGPEEIDATAEDYERVI
// AWCHEHGYLDDSRFVARFIASRSRKGYGPARIRQELNQKGISREATEKAMRECDIDWCAL
// ARDQATRKYGEPLPTVFSEKVKIQRFLLYRGYLMEDIQEIWRNFAD
// /\
// TESTSRRPAYARLLDRAVRILAVRDHSEQELRRKLAAPIMGKNGPEEIDATAEDYERVIA
// WCHEHGYLDDSRFVARFIASRSRKGYGPARIRQELNQKGISREATEKAMRECDIDWCALA
// RDQATRKYGEPLPTVFSEKVKIQRFLLYRGYLMEDIQEIWRNFAD
# PROSITE_Motif:
Not Available
# Important_Sites:
Not Available
# Transmembrane:
Not Available
# Cys/Met_Content:
1.8 %Cys (Translated Protein)
2.4 %Met (Translated Protein)
4.2 %Cys+Met (Translated Protein)
1.8 %Cys (Mature Protein)
1.8 %Met (Mature Protein)
3.6 %Cys+Met (Mature Protein)
# Secondary_Structure:
>RECX_ECOLI (Translated Protein)
MTESTSRRPAYARLLDRAVRILAVRDHSEQELRRKLAAPIMGKNGPEEIDATAEDYERVI
CCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHH
AWCHEHGYLDDSRFVARFIASRSRKGYGPARIRQELNQKGISREATEKAMRECDIDWCAL
HHHHHHCCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHCCCCHHHHHHHHHHHCHHHHHH
ARDQATRKYGEPLPTVFSEKVKIQRFLLYRGYLMEDIQEIWRNFAD
HHHHHHHHCCCCCCCCHHHHHHHHHHHHHCCCCHHHHHHHHHCCCC
/\
>RECX_ECOLI (Mature Protein)
TESTSRRPAYARLLDRAVRILAVRDHSEQELRRKLAAPIMGKNGPEEIDATAEDYERVIA
CCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHHH
WCHEHGYLDDSRFVARFIASRSRKGYGPARIRQELNQKGISREATEKAMRECDIDWCALA
HHHHHCCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHCCCCHHHHHHHHHHHCHHHHHHH
RDQATRKYGEPLPTVFSEKVKIQRFLLYRGYLMEDIQEIWRNFAD
HHHHHHHCCCCCCCCHHHHHHHHHHHHHCCCCHHHHHHHHHCCCC
# PDB_Accession:
& Not Available
# Resolution:
Not Available
# Structure_CLASS:
Mainly Alpha
# Quaternary_Structure:
Not Available
# Interacting_Partners:
Unknown
# Cofactors:
Not Available
# Metals_Ions:
Not Available
# Kcat_Value_[1/min]:
Not Available
# Specific_Activity_[micromol/min/mg]:
Not Available
# Km_Value_[mM]:
Not Available
# Substrates:
Not Available
# Products:
Not Available
# Specific_Reaction:
Not Available
# General_Reaction:
Not Available
# Inhibitor:
Not Available
# Priority:
6.2
# Status:
Not Available
# Availability:
Not Available
#END_ECARDFILE
#BEGIN_ECARDFILE
# Entry_ID:
CC3804A.1
# Accession_No.:
UA0003804
# Name:
Negative regulator of allantoin and glyoxylate utilization operons
# Alternate_Names:
Transcriptional regulator allR
# General_Function:
Regulatory functions; Member of IclR; Winged helix
# COG_Function:
Transcription (code K)
# COG_ID:
COG1414 Transcriptional regulator (Evalue = 1e-150)
# Specific_Function:
Negative regulator of allantoin and glyoxylate utilization operons.
# Riley_Gene_Function:
transcriptional repressor of allantoin metabolism (IclR family)
# Riley_Cell_Function:
>>>
Information transfer
RNA related
Transcription related
||
>>>
Regulation
Type of regulation
Transcriptional level
Repressor
||
>>>
Regulation
Genetic unit regulated
Operon (regulation of one operon)
||
>>>
Location of gene products
Cytoplasm
# Gene_Ontology:
>>>
Function: binding
Function: nucleic acid binding
Function: DNA binding
||
>>>
Process: physiological process
Process: metabolism
Process: regulation of metabolism
Process: regulation of cellular metabolism
Process: regulation of nucleobase, nucleoside, nucleotide and nucleic acid metabolism
Process: regulation of transcription
Process: regulation of transcription, DNA-dependent
||
>>>
Process: cellular metabolism
Process: nucleobase, nucleoside, nucleotide and nucleic acid metabolism
Process: transcription
Process: transcription, DNA-dependent
Process: regulation of transcription, DNA-dependent
||
>>>
Process: regulation of transcription
Process: regulation of transcription, DNA-dependent
||
>>>
Process: regulation of nucleobase, nucleoside, nucleotide and nucleic acid metabolism
Process: regulation of transcription
Process: regulation of transcription, DNA-dependent
||
>>>
Process: regulation of cellular metabolism
Process: regulation of nucleobase, nucleoside, nucleotide and nucleic acid metabolism
Process: regulation of transcription
Process: regulation of transcription, DNA-dependent
||
>>>
Process: primary metabolism
Process: nucleobase, nucleoside, nucleotide and nucleic acid metabolism
Process: transcription
Process: transcription, DNA-dependent
Process: regulation of transcription, DNA-dependent
||
>>>
Process: regulation of transcription
Process: regulation of transcription, DNA-dependent
||
>>>
Process: regulation of nucleobase, nucleoside, nucleotide and nucleic acid metabolism
Process: regulation of transcription
Process: regulation of transcription, DNA-dependent
||
>>>
Process: regulation of physiological process
Process: regulation of metabolism
Process: regulation of cellular metabolism
Process: regulation of nucleobase, nucleoside, nucleotide and nucleic acid metabolism
Process: regulation of transcription
Process: regulation of transcription, DNA-dependent
||
>>>
Process: regulation of cellular physiological process
Process: regulation of cellular metabolism
Process: regulation of nucleobase, nucleoside, nucleotide and nucleic acid metabolism
Process: regulation of transcription
Process: regulation of transcription, DNA-dependent
||
>>>
Process: cellular physiological process
Process: cellular metabolism
Process: nucleobase, nucleoside, nucleotide and nucleic acid metabolism
Process: transcription
Process: transcription, DNA-dependent
Process: regulation of transcription, DNA-dependent
||
>>>
Process: regulation of transcription
Process: regulation of transcription, DNA-dependent
||
>>>
Process: regulation of nucleobase, nucleoside, nucleotide and nucleic acid metabolism
Process: regulation of transcription
Process: regulation of transcription, DNA-dependent
||
>>>
Process: regulation of cellular metabolism
Process: regulation of nucleobase, nucleoside, nucleotide and nucleic acid metabolism
Process: regulation of transcription
Process: regulation of transcription, DNA-dependent
||
>>>
Process: regulation of cellular physiological process
Process: regulation of cellular metabolism
Process: regulation of nucleobase, nucleoside, nucleotide and nucleic acid metabolism
Process: regulation of transcription
Process: regulation of transcription, DNA-dependent
||
>>>
Process: cellular process
Process: regulation of cellular process
Process: regulation of cellular physiological process
Process: regulation of cellular metabolism
Process: regulation of nucleobase, nucleoside, nucleotide and nucleic acid metabolism
Process: regulation of transcription
Process: regulation of transcription, DNA-dependent
||
>>>
Process: cellular physiological process
Process: cellular metabolism
Process: nucleobase, nucleoside, nucleotide and nucleic acid metabolism
Process: transcription
Process: transcription, DNA-dependent
Process: regulation of transcription, DNA-dependent
||
>>>
Process: regulation of transcription
Process: regulation of transcription, DNA-dependent
||
>>>
Process: regulation of nucleobase, nucleoside, nucleotide and nucleic acid metabolism
Process: regulation of transcription
Process: regulation of transcription, DNA-dependent
||
>>>
Process: regulation of cellular metabolism
Process: regulation of nucleobase, nucleoside, nucleotide and nucleic acid metabolism
Process: regulation of transcription
Process: regulation of transcription, DNA-dependent
||
>>>
Process: regulation of cellular physiological process
Process: regulation of cellular metabolism
Process: regulation of nucleobase, nucleoside, nucleotide and nucleic acid metabolism
Process: regulation of transcription
Process: regulation of transcription, DNA-dependent
||
>>>
Process: regulation of biological process
Process: regulation of physiological process
Process: regulation of metabolism
Process: regulation of cellular metabolism
Process: regulation of nucleobase, nucleoside, nucleotide and nucleic acid metabolism
Process: regulation of transcription
Process: regulation of transcription, DNA-dependent
||
>>>
Process: regulation of cellular physiological process
Process: regulation of cellular metabolism
Process: regulation of nucleobase, nucleoside, nucleotide and nucleic acid metabolism
Process: regulation of transcription
Process: regulation of transcription, DNA-dependent
||
>>>
Process: regulation of cellular process
Process: regulation of cellular physiological process
Process: regulation of cellular metabolism
Process: regulation of nucleobase, nucleoside, nucleotide and nucleic acid metabolism
Process: regulation of transcription
Process: regulation of transcription, DNA-dependent
||
>>>
Component: Not Available
# Location:
Cytoplasm
# Blattner_Number:
b0506
# Gene_Sequence:
ATGACGGAAGTTAGACGGCGCGGCAGGCCAGGACAGGCGGAGCCTGTGGCACAGAAGGGCGCACAGGCGT
TAGAGCGGGGAATTGCGATTCTGCAATATTTGGAAAAAAGTGGGGGAAGTTCGTCGGTTAGCGATATTTC
TCTCAATCTGGATTTGCCGCTCTCCACGACCTTTCGCTTGCTGAAGGTTTTACAGGCAGCGGATTTTGTC
TATCAGGACAGTCAATTAGGCTGGTGGCATATAGGATTAGGTGTCTTTAACGTCGGTGCGGCGTACATCC
ATAACCGCGATGTCCTCTCCGTCGCCGGGCCGTTTATGCGCCGCCTGATGTTACTTTCCGGCGAAACGGT
CAATGTCGCGATCCGTAACGGCAATGAAGCGGTATTAATTGGTCAGTTAGAGTGTAAATCGATGGTCAGG
ATGTGTGCGCCACTGGGCAGTCGTCTGCCACTGCATGCTTCCGGTGCGGGCAAAGCGCTGCTTTATCCGC
TGGCGGAAGAGGAGTTGATGAGCATCATTCTGCAAACCGGTTTGCAGCAGTTTACGCCAACTACGCTTGT
GGATATGCCCACCTTGCTGAAGGACCTGGAACAAGCGCGTGAACTGGGCTATACCGTAGATAAAGAAGAG
CATGTTGTAGGTCTGAATTGCATAGCTTCAGCAATTTACGATGATGTCGGTAGTGTTGTTGCCGCTATCT
CCATCTCCGGGCCTTCATCAAGACTGACAGAAGATCGTTTTGTCAGTCAGGGTGAGCTGGTCAGAGACAC
CGCCCGCGATATCAGCACGGCGTTGGGACTGAAAGCACATCCATAA
# Upstream_100_bases:
AACAGGAACTCTGTTTTGCGTGACGCCTGCAACCGACTTGCATAAGATAAACTAATTGTTCATTGTTTAT
GCTCACTTGTAGGTCGGAGTTAACGTAGGT
# Blattner_No_Ontology:
Putative regulatory proteins
# Gene_Position:
532235-533050 (Clockwise)
# Centisome_Position:
11.471
# Gene_Name:
allR or glxA3
# GC_Content:
52.57%
# Metabolic_Importance:
Non_Essential
# Preceding_Gene:
allA
# Following_Gene:
gcl
# Operon_Status:
No
# Operon_Components:
None
# Paralogues:
b4018 (iclR) 42; b0272 (yagI) 30; b1827 (kdgR) 30; b3574 (yiaJ) 30; b4299 (yjhI) 26; b2248 (yfaX) 28;
# Copy Number:
Not Available
# RNA_Copy_No.:
Log phase (2max): 0.15
Stationary phase (2max): 1.45
Ref: Nature Biotech., 18, 1262-68, Dec. 2000 (PMID=11101804)
# Genbank_ID_(DNA):
G1786715
# Genbank_ID_(Protein):
AAC73608.1
# SWISS_PROT_(AC_&_ID):
$ ALLR_ECOLI (P0ACN4)
# 2D_Gel_Image:
Not Available
# Other_Databases:
- ECOCYC: EG13616
- EcoGene: EG13616
- EMBL: U89024
- InterPro: IPR005471
- Pfam: PF01614
- PIR: A64782
- PROSITE: PS51077
# Pfam_Domain/Function:
PF01614 Bacterial transcriptional regulator
# Homologues:
Not Available
# Similarity:
Contains 1 HTH iclR-type DNA-binding domain. Contains 1 iclR-ED (iclR effector binding) domain.
# EC_Number:
Not Available
# No._of_Amino_Acids:
271 (Translated Protein)
270 (Mature Protein)
# Molecular_Weight:
29270 29139
# Theoretical_pI:
6.03
# Theoretical_pI (Mature):
6.03
# Sequence:
// MTEVRRRGRPGQAEPVAQKGAQALERGIAILQYLEKSGGSSSVSDISLNLDLPLSTTFRL
// LKVLQAADFVYQDSQLGWWHIGLGVFNVGAAYIHNRDVLSVAGPFMRRLMLLSGETVNVA
// IRNGNEAVLIGQLECKSMVRMCAPLGSRLPLHASGAGKALLYPLAEEELMSIILQTGLQQ
// FTPTTLVDMPTLLKDLEQARELGYTVDKEEHVVGLNCIASAIYDDVGSVVAAISISGPSS
// RLTEDRFVSQGELVRDTARDISTALGLKAHP
// /\
// TEVRRRGRPGQAEPVAQKGAQALERGIAILQYLEKSGGSSSVSDISLNLDLPLSTTFRLL
// KVLQAADFVYQDSQLGWWHIGLGVFNVGAAYIHNRDVLSVAGPFMRRLMLLSGETVNVAI
// RNGNEAVLIGQLECKSMVRMCAPLGSRLPLHASGAGKALLYPLAEEELMSIILQTGLQQF
// TPTTLVDMPTLLKDLEQARELGYTVDKEEHVVGLNCIASAIYDDVGSVVAAISISGPSSR
// LTEDRFVSQGELVRDTARDISTALGLKAHP
# PROSITE_Motif:
HTH_ICLR_FAMILY; PATTERN. PS01051; Bacterial regulatory proteins, iclR family signature. [GAD]-[YWA]-[GSTAC]-x-[DSV]-x(2)-E-x(6)-[CSA]-[LIV]-[GSA]-x(2)-[LIV]-PA [FYWLH]-[DNG]. PDOC00807; //
# Important_Sites:
Not Available
# Transmembrane:
Not Available
# Cys/Met_Content:
1.1 %Cys (Translated Protein)
2.6 %Met (Translated Protein)
3.7 %Cys+Met (Translated Protein)
1.1 %Cys (Mature Protein)
2.2 %Met (Mature Protein)
3.3 %Cys+Met (Mature Protein)
# Secondary_Structure_(PDB):
MNTLKKAFEILDFIVKNPGDVSVSEIAEKFNMSVSNAYKYMVVLEEKGFVL
CCHHHHHHHHHHHHHHCCCEEEHHHHHHHHCCCHHHHHHHHHHHHHHCEEE
RKKDKRYVPGYKLIEYGSFVLRRFNIRDIAHDHLVDIMKRTGETVHLILKD
ECCCCEEEEEHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCEEEEEEEEC
GFEGVYIDKVEGEQSIPMVSRLGMKVDLYSTASGKSILAFVPEKELKEYLK
CCEEEEEEEECCCCCCCCCCCCCEEECCCCCHHHHHHHHCCCHHHHHHHHH
IVELKPKTPNTITNPRVLKRELEKIRKRGYAVDNEENEIGIMCVGVPIFDH
CCCCCCCCCCCCCCHHHHHHHHHHHHHHCEEEEECCCCCCEEEEEEEEECC
NGYPVAGVSISGVARKFTEEKIEEYSDVLKEKAEEISRKLGY
CCCCEEEEEEEEECCCCCHHHHHHHHHHHHHHHHHHHHHHCC
# PDB_Accession:
& 1TF1
# Resolution:
Not Available
# Structure_CLASS:
Alpha Beta
# Quaternary_Structure:
Not Available
# Interacting_Partners:
1) DNA,
# Cofactors:
Not Available
# Metals_Ions:
Not Available
# Kcat_Value_[1/min]:
Not Available
# Specific_Activity_[micromol/min/mg]:
Not Available
# Km_Value_[mM]:
Not Available
# Substrates:
DNA
# Products:
Not Available
# Specific_Reaction:
Protein + DNA = Protein-DNA
# General_Reaction:
Not Available
# Inhibitor:
Not Available
# Priority:
1.0
# Status:
Selected, Cloned, Expressed, Soluble, Purified, Crystallized, Diffraction-quality Crystals, Diffraction, Crystal Structure, In PDB
# Availability:
Midwest Center for Structural Genomics
#END_ECARDFILE
#BEGIN_ECARDFILE
# Entry_ID:
CC1902A.1
# Accession_No.:
UA0001902
# Name:
Hypothetical protein yebG
# Alternate_Names:
Not Available
# General_Function:
Unknown
# COG_Function:
Function unknown (code S)
# COG_ID:
COG3141 Uncharacterized protein conserved in bacteria (Evalue = 1e-48)
# Specific_Function:
Genes yebG-yebF are regulated by transcriptional attenuation.
# Riley_Gene_Function:
DNA damage-inducible gene in SOS regulon, dependent on cyclic AMP and H-NS; conserved protein regulated by LexA
# Riley_Cell_Function:
>>>
Information transfer
DNA related
DNA repair
||
>>>
Regulation
Type of regulation
Regulation level unknown
||
>>>
Cell processes
SOS response
||
>>>
Location of gene products
Cytoplasm
# Gene_Ontology:
>>>
Function: Not Available
||
>>>
Process: Not Available
||
>>>
Component: Not Available
# Location:
Cytoplasm
# Blattner_Number:
b1848
# Gene_Sequence:
ATGGCGGTTGAAGTTAAATACGTAGTCATTCGTGAGGGCGAAGAGAAAATGTCGTTTACCAGCAAAAAGG
AAGCCGATGCTTATGACAAAATGCTTGATACGGCGGATCTGCTTGACACCTGGCTGACAAATTCTCCAGT
GCAAATGGAAGACGAGCAACGTGAAGCCCTTTCGCTATGGCTGGCAGAACAAAAAGATGTGCTGAGCACC
ATTCTGAAAACCGGCAAATTACCGTCCCCACAGGTCGTCGGTGCTGAATCCGAAGAGGAAGATGCCTCAC
ACGCGGCCTGA
# Upstream_100_bases:
ATAAACGAAAACGTTTGCGTGTGTCTTTATTGCTGATGTTGATTTCTCAACCGAAAAGAAATATACTGTA
TAAAATCACAGTTATTATGAGAGGCTGCAA
# Blattner_No_Ontology:
Hypothetical, unclassified, unknown
# Gene_Position:
1928481-1928771 (Counter Clockwise)
# Centisome_Position:
41.571
# Gene_Name:
yebG
# GC_Content:
49.48%
# Metabolic_Importance:
Unknown
# Preceding_Gene:
yebF
# Following_Gene:
purT
# Operon_Status:
No
# Operon_Components:
None
# Paralogues:
None
# Copy Number:
Unknown
# RNA_Copy_No.:
Log phase (2max): 0.33
Stationary phase (2max): 0.31
Ref: Nature Biotech., 18, 1262-68, Dec. 2000 (PMID=11101804)
# Genbank_ID_(DNA):
G1788153
# Genbank_ID_(Protein):
AAC74918.1
# SWISS_PROT_(AC_&_ID):
$ YEBG_ECOLI (P0ACY9)
# 2D_Gel_Image:
Not Available
# Other_Databases:
- ECOCYC: EG11808
- EcoGene: EG11808
- EMBL: L20897
- InterPro: IPR009813
- Pfam: PF07130
- PIR: H64946
# Pfam_Domain/Function:
PF07130 YebG protein;
# Homologues:
Not Available
# Similarity:
Not Available
# EC_Number:
Not Available
# No._of_Amino_Acids:
96 (Translated Protein)
95 (Mature Protein)
# Molecular_Weight:
10717 10586
# Theoretical_pI:
4.09
# Theoretical_pI (Mature):
4.09
# Sequence:
// MAVEVKYVVIREGEEKMSFTSKKEADAYDKMLDTADLLDTWLTNSPVQMEDEQREALSLW
// LAEQKDVLSTILKTGKLPSPQVVGAESEEEDASHAA
// /\
// AVEVKYVVIREGEEKMSFTSKKEADAYDKMLDTADLLDTWLTNSPVQMEDEQREALSLWL
// AEQKDVLSTILKTGKLPSPQVVGAESEEEDASHAA
# PROSITE_Motif:
Not Available
# Important_Sites:
Not Available
# Transmembrane:
Not Available
# Cys/Met_Content:
0.0 %Cys (Translated Protein)
4.2 %Met (Translated Protein)
4.2 %Cys+Met (Translated Protein)
0.0 %Cys (Mature Protein)
3.2 %Met (Mature Protein)
3.2 %Cys+Met (Mature Protein)
# Secondary_Structure:
>YEBG_ECOLI (Translated Protein)
MAVEVKYVVIREGEEKMSFTSKKEADAYDKMLDTADLLDTWLTNSPVQMEDEQREALSLW
CEEEEEEEEEECCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHH
LAEQKDVLSTILKTGKLPSPQVVGAESEEEDASHAA
HHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCC
/\
>YEBG_ECOLI (Mature Protein)
AVEVKYVVIREGEEKMSFTSKKEADAYDKMLDTADLLDTWLTNSPVQMEDEQREALSLWL
EEEEEEEEEECCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHH
AEQKDVLSTILKTGKLPSPQVVGAESEEEDASHAA
HHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCC
# PDB_Accession:
& Not Available
# Resolution:
Not Available
# Structure_CLASS:
Alpha Beta
# Quaternary_Structure:
Not Available
# Interacting_Partners:
Not Available
# Cofactors:
Not Available
# Metals_Ions:
Not Available
# Kcat_Value_[1/min]:
Not Available
# Specific_Activity_[micromol/min/mg]:
Not Available
# Km_Value_[mM]:
Not Available
# Substrates:
Not Available
# Products:
Not Available
# Specific_Reaction:
Not Available
# General_Reaction:
Not Available
# Inhibitor:
Not Available
# Priority:
9.4
# Status:
Selected, Cloned, Expressed, Soluble, Purified
# Availability:
RSGI
#END_ECARDFILE
#BEGIN_ECARDFILE
# Entry_ID:
CC1465A.1
# Accession_No.:
UA0001465
# Name:
Protein asmA precursor
# Alternate_Names:
Not Available
# General_Function:
Not Available
# COG_Function:
Cell wall/membrane/envelope biogenesis (code M)
# COG_ID:
COG2982 Uncharacterized protein involved in outer membrane biogenesis (Evalue = 0.0)
# Specific_Function:
Involved in the inhibition of assembly of mutant ompF proteins. In general, could be involved in the assembly of outer membrane proteins.
# Riley_Gene_Function:
suppressor of ompF assembly mutants
# Riley_Cell_Function:
>>>
Metabolism
Macromolecules (cellular constituent) biosynthesis
Lipopolysaccharide
||
>>>
Cell structure
Surface antigens (ECA, O antigen of LPS)
# Gene_Ontology:
>>>
Function: binding
Function: ion binding
Function: cation binding
Function: transition metal ion binding
Function: iron ion binding
||
>>>
Function: metal ion binding
Function: transition metal ion binding
Function: iron ion binding
||
>>>
Process: physiological process
Process: metabolism
Process: cellular metabolism
Process: generation of precursor metabolites and energy
Process: electron transport
||
>>>
Process: cellular physiological process
Process: transport
Process: electron transport
||
>>>
Process: cellular metabolism
Process: generation of precursor metabolites and energy
Process: electron transport
||
>>>
Process: localization
Process: establishment of localization
Process: transport
Process: electron transport
||
>>>
Process: cellular process
Process: cellular physiological process
Process: transport
Process: electron transport
||
>>>
Process: cellular metabolism
Process: generation of precursor metabolites and energy
Process: electron transport
||
>>>
Component: Not Available
# Location:
Periplasmic Protein
# Blattner_Number:
b2064
# Gene_Sequence:
ATGAGACGATTTCTGACGACGCTGATGATACTCCTGGTCGTGCTGGTGGCCGGGTTATCTGCGTTAGTGT
TGCTGGTGAATCCGAATGATTTCCGCGACTATATGGTCAAGCAAGTTGCTGCACGTAGCGGTTATCAATT
GCAGCTCGACGGGCCACTGCGTTGGCACGTCTGGCCGCAGCTTAGTATCCTCTCCGGGCGAATGTCTCTC
ACCGCCCAGGGCGCAAGCCAGCCACTGGTTCGCGCCGACAACATGCGTCTGGACGTGGCGCTTTTACCAC
TACTGAGTCATCAACTGAGCGTTAAGCAGGTGATGCTAAAAGGGGCAGTGATCCAACTGACGCCGCAGAC
GGAAGCGGTGCGCAGTGAAGACGCTCCGGTTGCACCGCGCGACAATACCTTGCCGGATCTGTCAGACGAT
CGCGGATGGTCGTTTGATATATCCAGTCTTAAGGTGGCGGACAGCGTGCTGGTGTTCCAGCATGAAGATG
ACGAGCAGGTGACAATCCGCAATATTCGCCTGCAAATGGAACAAGATCCCCAACATCGTGGTTCATTTGA
GTTCTCCGGGCGGGTTAATCGCGATCAGCGCGATCTCACGATATCCCTTAACGGTACGGTAGATGCTTCT
GATTATCCGCATGATTTAACGGCGGCTATTGAACAAATTAACTGGCAGTTGCAGGGTGCCGATTTACCAA
AACAAGGTATTCAGGGGCAGGGGAGTTTCCAGGCCCAGTGGCAGGAGTCACATAAACGCCTTTCATTTAA
CCAAATTAGTTTGACCGCCAATGATAGTACGCTAAGCGGGCAAGCACAGGTTACGCTGACAGAGAAACCG
GAATGGCAGCTGAGGCTGCAATTCCCGCAACTGAATCTTGACAACCTCATCCCGCTTAATGAAACCGCGA
ATGGTGAAAACGGTGCCGCGCAGCAGGGGCAGAGCCAATCAACGTTGCCGCGCCCGGTCATTTCTTCGCG
TATTGATGAACCGGCCTATCAGGGACTGCAAGGCTTTACGGCTGATATTTTGTTGCAGGCCAGTAACGTG
CGCTGGCGCGGAATGAATTTTACAGATGTTGCCACGCAAATGACCAACAAGTCGGGTTTGCTGGAAATTA
CTCAACTGCAGGGCAAACTTAACGGTGGACAGGTTTCACTGCCGGGCACGCTGGACGCGACATCAATAAA
TCCGCGGATAAACTTCCAGCCACGGCTGGAAAACGTTGAGATTGGTACCATTCTGAAGGCGTTTAACTAT
CCGATTTCGTTGACCGGAAAAATGTCACTGGCTGGTGATTTCTCCGGTGCTGACATAGATGCCGACGCAT
TCCGCCACAACTGGCAAGGACAGGCACATGTCGAAATGACCGACACGCGCATGGAAGGGATGAACTTCCA
GCAGATGATTCAGCAAGCGGTAGAGCGTAATGGCGGTGATGTGAAGGCCGCTGAAAACTTTGATAACGTG
ACGCGGCTTGACCGCTTTACCACCGATTTGACGTTGAAGGATGGCGTCGTGACGTTAAACGACATGCAAG
GTCAATCGCCTGTGCTGGCGCTGACAGGGGAAGGCATGTTGAATCTGGCAGATCAAACCTGCGACACCCA
GTTTGATATTCGGGTCGTGGGTGGCTGGAACGGGGAAAGCAAACTGATTGATTTCCTGAAAGAAACGCCA
GTACCGCTGCGGGTTTATGGCAACTGGCAGCAACTCAATTACAGCCTGCAAGTGGATCAGTTACTGCGCA
AACATCTACAGGACGAAGCGAAACGTCGCCTGAATGACTGGGCCGAGCGGAATAAAGATTCCCGTAATGG
CAAAGATGTGAAGAAGTTGCTGGAGAAGATGTAG
# Upstream_100_bases:
GCGACCTTACAACCGCCGTGAAGATGCGAAATATCGCAACCAGCAGGGCGCGGTAGCCAGCCGAATCGAT
AAAGACTAATTCAGGCCCATTGAGGATACC
# Blattner_No_Ontology:
Putative enzymes
# Gene_Position:
2137783-2139636 (Counter Clockwise)
# Centisome_Position:
46.116
# Gene_Name:
asmA
# GC_Content:
52.54%
# Metabolic_Importance:
Non_Essential
# Preceding_Gene:
yegH
# Following_Gene:
dcd
# Operon_Status:
No
# Operon_Components:
None
# Paralogues:
None
# Copy Number:
Unknown
# RNA_Copy_No.:
Log phase (2max): 0.17
Stationary phase (2max): 0.14
Ref: Nature Biotech., 18, 1262-68, Dec. 2000 (PMID=11101804)
# Genbank_ID_(DNA):
G1788378
# Genbank_ID_(Protein):
AAC75125.1
# SWISS_PROT_(AC_&_ID):
$ ASMA_ECOLI (P28249)
# 2D_Gel_Image:
Not Available
# Other_Databases:
- ECOCYC: EG11361
- EcoGene: EG11361
- EMBL: U11035
- InterPro: IPR007844; IPR012282
- Pfam: PF05170
- PIR: G64972
# Pfam_Domain/Function:
PF05170 AsmA family;
# Homologues:
Not Available
# Similarity:
Not Available
# EC_Number:
Not Available
# No._of_Amino_Acids:
617 (Translated Protein)
585 (Mature Protein)
# Molecular_Weight:
68964 65382
# Theoretical_pI:
5.09
# Theoretical_pI (Mature):
4.94
# Sequence:
// MRRFLTTLMILLVVLVAGLSALVLLVNPNDFRDYMVKQVAARSGYQLQLDGPLRWHVWPQ
// LSILSGRMSLTAQGASQPLVRADNMRLDVALLPLLSHQLSVKQVMLKGAVIQLTPQTEAV
// RSEDAPVAPRDNTLPDLSDDRGWSFDISSLKVADSVLVFQHEDDEQVTIRNIRLQMEQDP
// QHRGSFEFSGRVNRDQRDLTISLNGTVDASDYPHDLTAAIEQINWQLQGADLPKQGIQGQ
// GSFQAQWQESHKRLSFNQISLTANDSTLSGQAQVTLTEKPEWQLRLQFPQLNLDNLIPLN
// ETANGENGAAQQGQSQSTLPRPVISSRIDEPAYQGLQGFTADILLQASNVRWRGMNFTDV
// ATQMTNKSGLLEITQLQGKLNGGQVSLPGTLDATSINPRINFQPRLENVEIGTILKAFNY
// PISLTGKMSLAGDFSGADIDADAFRHNWQGQAHVEMTDTRMEGMNFQQMIQQAVERNGGD
// VKAAENFDNVTRLDRFTTDLTLKDGVVTLNDMQGQSPVLALTGEGMLNLADQTCDTQFDI
// RVVGGWNGESKLIDFLKETPVPLRVYGNWQQLNYSLQVDQLLRKHLQDEAKRRLNDWAER
// NKDSRNGKDVKKLLEKM
// /\
// DYMVKQVAARSGYQLQLDGPLRWHVWPQLSILSGRMSLTAQGASQPLVRADNMRLDVALL
// PLLSHQLSVKQVMLKGAVIQLTPQTEAVRSEDAPVAPRDNTLPDLSDDRGWSFDISSLKV
// ADSVLVFQHEDDEQVTIRNIRLQMEQDPQHRGSFEFSGRVNRDQRDLTISLNGTVDASDY
// PHDLTAAIEQINWQLQGADLPKQGIQGQGSFQAQWQESHKRLSFNQISLTANDSTLSGQA
// QVTLTEKPEWQLRLQFPQLNLDNLIPLNETANGENGAAQQGQSQSTLPRPVISSRIDEPA
// YQGLQGFTADILLQASNVRWRGMNFTDVATQMTNKSGLLEITQLQGKLNGGQVSLPGTLD
// ATSINPRINFQPRLENVEIGTILKAFNYPISLTGKMSLAGDFSGADIDADAFRHNWQGQA
// HVEMTDTRMEGMNFQQMIQQAVERNGGDVKAAENFDNVTRLDRFTTDLTLKDGVVTLNDM
// QGQSPVLALTGEGMLNLADQTCDTQFDIRVVGGWNGESKLIDFLKETPVPLRVYGNWQQL
// NYSLQVDQLLRKHLQDEAKRRLNDWAERNKDSRNGKDVKKLLEKM
# PROSITE_Motif:
Not Available
# Important_Sites:
Signal Chain 1 22
# Transmembrane:
Not Available
# Cys/Met_Content:
0.2 %Cys (Translated Protein)
2.8 %Met (Translated Protein)
2.9 %Cys+Met (Translated Protein)
0.2 %Cys (Mature Protein)
2.6 %Met (Mature Protein)
2.7 %Cys+Met (Mature Protein)
# Secondary_Structure:
>ASMA_ECOLI (Translated Protein)
MRRFLTTLMILLVVLVAGLSALVLLVNPNDFRDYMVKQVAARSGYQLQLDGPLRWHVWPQ
CHHHHHHHHHHHHHHHHHHHEEEEEECCCHHHHHHHHHHHHHCCCEEEEECCCCCEEEEE
LSILSGRMSLTAQGASQPLVRADNMRLDVALLPLLSHQLSVKQVMLKGAVIQLTPQTEAV
EEEEEEEEEEEECCCCCCEEEEEEEEECHHHHHHHHCCCEEEEEEECCCEEEEEECCCCC
RSEDAPVAPRDNTLPDLSDDRGWSFDISSLKVADSVLVFQHEDDEQVTIRNIRLQMEQDP
CCCCCCCCCCCCCCCCCCCCCCCEEEECCEEEEEEEEEEEECCCCEEEEEEEEEEEEECC
QHRGSFEFSGRVNRDQRDLTISLNGTVDASDYPHDLTAAIEQINWQLQGADLPKQGIQGQ
CCCCEEEEEEECCCCCEEEEEEEEEEECCCCCCHHHHHHHHHHHHHHHHHHCCCCCCCCC
GSFQAQWQESHKRLSFNQISLTANDSTLSGQAQVTLTEKPEWQLRLQFPQLNLDNLIPLN
CCEEEEECCCCCEEEHHEEEEEECCCEEEEEECCCHHHHHHHHHHCCCCCCCCCCCCCCH
ETANGENGAAQQGQSQSTLPRPVISSRIDEPAYQGLQGFTADILLQASNVRWRGMNFTDV
HHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHEEEECCCEECCCCHHHH
ATQMTNKSGLLEITQLQGKLNGGQVSLPGTLDATSINPRINFQPRLENVEIGTILKAFNY
HHHHCCCCCEEEEECCCCCEECEEEEEEEEEEECCCCCEEEECCCCCCCCHHHHHHHHCC
PISLTGKMSLAGDFSGADIDADAFRHNWQGQAHVEMTDTRMEGMNFQQMIQQAVERNGGD
CCCEEEEEEEEEEEEECCCCHHHHHHCCCCEEEEEEECCCCCCCCHHHHHHHHHHHCCCC
VKAAENFDNVTRLDRFTTDLTLKDGVVTLNDMQGQSPVLALTGEGMLNLADQTCDTQFDI
EEEECCCCCCCCHHCEEECCCEECCEEECCCCEEECCEEEEEECCCCCCHHCEEEEEEEE
RVVGGWNGESKLIDFLKETPVPLRVYGNWQQLNYSLQVDQLLRKHLQDEAKRRLNDWAER
EEEECCCCCCCCCCCCCCCCEEEEEEEEEECCCEEEEHHHHHHHHHHHHHHHHHHHHHHH
NKDSRNGKDVKKLLEKM
CCCCCCHHHHHHHHHHC
/\
>ASMA_ECOLI (Mature Protein)
VLLVNPNDFRDYMVKQVAARSGYQLQLDGPLRWHVWPQLSILSGRMSLTAQGASQPLVRA
EEEECCCHHHHHHHHHHHHHCCCEEEEECCCCCEEEEEEEEEEEEEEEEECCCCCCEEEE
DNMRLDVALLPLLSHQLSVKQVMLKGAVIQLTPQTEAVRSEDAPVAPRDNTLPDLSDDRG
EEEEECHHHHHHHHCCCEEEEEEECCCEEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCC
WSFDISSLKVADSVLVFQHEDDEQVTIRNIRLQMEQDPQHRGSFEFSGRVNRDQRDLTIS
CEEEECCEEEEEEEEEEEECCCCEEEEEEEEEEEEECCCCCCEEEEEEECCCCCEEEEEE
LNGTVDASDYPHDLTAAIEQINWQLQGADLPKQGIQGQGSFQAQWQESHKRLSFNQISLT
EEEEECCCCCCHHHHHHHHHHHHHHHHHHCCCCCCCCCCCEEEEECCCCCEEEHHEEEEE
ANDSTLSGQAQVTLTEKPEWQLRLQFPQLNLDNLIPLNETANGENGAAQQGQSQSTLPRP
ECCCEEEEEECCCHHHHHHHHHHCCCCCCCCCCCCCCHHHHCCCCCCCCCCCCCCCCCCC
VISSRIDEPAYQGLQGFTADILLQASNVRWRGMNFTDVATQMTNKSGLLEITQLQGKLNG
CCCCCCCCCCHHHHHHHHHHHEEEECCCEECCCCHHHHHHHHCCCCCEEEEECCCCCEEC
GQVSLPGTLDATSINPRINFQPRLENVEIGTILKAFNYPISLTGKMSLAGDFSGADIDAD
EEEEEEEEEEECCCCCEEEECCCCCCCCHHHHHHHHCCCCCEEEEEEEEEEEEECCCCHH
AFRHNWQGQAHVEMTDTRMEGMNFQQMIQQAVERNGGDVKAAENFDNVTRLDRFTTDLTL
HHHHCCCCEEEEEEECCCCCCCCHHHHHHHHHHHCCCCEEEECCCCCCCCHHCEEECCCE
KDGVVTLNDMQGQSPVLALTGEGMLNLADQTCDTQFDIRVVGGWNGESKLIDFLKETPVP
ECCEEECCCCEEECCEEEEEECCCCCCHHCEEEEEEEEEEEECCCCCCCCCCCCCCCCEE
LRVYGNWQQLNYSLQVDQLLRKHLQDEAKRRLNDWAERNKDSRNGKDVKKLLEKM
EEEEEEEECCCEEEEHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHC
# PDB_Accession:
& Not Available
# Resolution:
Not Available
# Structure_CLASS:
Alpha Beta
# Quaternary_Structure:
Not Available
# Interacting_Partners:
Not Available
# Cofactors:
Not Available
# Metals_Ions:
Not Available
# Kcat_Value_[1/min]:
Not Available
# Specific_Activity_[micromol/min/mg]:
Not Available
# Km_Value_[mM]:
Not Available
# Substrates:
Not Available
# Products:
Not Available
# Specific_Reaction:
Not Available
# General_Reaction:
Not Available
# Inhibitor:
Not Available
# Priority:
5.9
# Status:
Not Available
# Availability:
Not Available
#END_ECARDFILE
#BEGIN_ECARDFILE
# Entry_ID:
CC4046A.1
# Accession_No.:
UA0004046
# Name:
Putative ABC transporter periplasmic-binding protein ycjN precursor
# Alternate_Names:
Not Available
# General_Function:
Periplasmic binding protein-like II
# COG_Function:
Carbohydrate transport and metabolism (code G)
# COG_ID:
COG1653 ABC-type sugar transport system, periplasmic component (Evalue = 0.0)
# Specific_Function:
Probably part of the binding-protein-dependent transport system ycjNOP.
# Riley_Gene_Function:
putative transport protein (ABC superfamily, peri_bind)
# Riley_Cell_Function:
>>>
Transport
Primary Active Transporters
Pyrophosphate Bond (ATP; GTP; P2) Hydrolysis-driven Active Transporters
The ATP-binding Cassette (ABC) Superfamily + ABC-type Uptake Permeases
periplasmic binding component
||
>>>
Location of gene products
Periplasmic space
# Gene_Ontology:
>>>
Function: transporter activity
||
>>>
Function: transporter activity
||
>>>
Process: physiological process
Process: cellular physiological process
Process: transport
||
>>>
Process: localization
Process: establishment of localization
Process: transport
||
>>>
Process: cellular process
Process: cellular physiological process
Process: transport
Process: physiological process
Process: cellular physiological process
Process: transport
||
>>>
Process: localization
Process: establishment of localization
Process: transport
||
>>>
Process: cellular process
Process: cellular physiological process
Process: transport
||
>>>
Component: Not Available
# Location:
Periplasmic (Potential)
# Blattner_Number:
b1310
# Gene_Sequence:
ATGATTAAATCAAAAATCGTGCTGTTATCAGCACTGGTTTCATGCGCCCTGATTTCAGGCTGTAAAGAAG
AAAATAAAACGAATGTATCCATCGAATTTATGCATTCTTCGGTGGAGCAGGAGCGCCAGGCCGTTATCAG
TAAATTGATTGCCCGTTTTGAAAAAGAAAACCCTGGCATCACCGTTAAGCAAGTGCCCGTGGAAGAAGAT
GCCTATAACACTAAAGTCATTACTCTTTCACGTAGCGGTTCGCTGCCGGAAGTGATCGAAACCAGCCATG
ACTACGCCAAAGTGATGGACAAAGAGCAGCTTATCGATCGCAAAGCGGTTGCCACAGTCATCAGCAACGT
TGGTGAAGGCGCGTTTTACGATGGCGTACTGCGTATTGTGCGTACCGAAGATGGTAGCGCATGGACCGGT
GTTCCTGTCAGCGCCTGGATTGGCGGTATCTGGTATCGCAAAGATGTGCTGGCAAAAGCGGGGCTTGAGG
AGCCGAAAAACTGGCAACAGCTGCTGGACGTTGCACAGAAACTGAATGACCCGGCGAATAAAAAATACGG
CATTGCGCTGCCTACAGCAGAAAGCGTGTTGACGGAACAATCCTTCTCCCAGTTTGCGTTATCCAACCAG
GCTAACGTCTTTAACGCCGAAGGCAAAATCACCCTTGATACACCAGAGATGATGCAGGCACTGACCTATT
ACCGCGACCTTACTGCCAACACTATGCCGGGTTCTAACGACATCATGGAAGTGAAAGACGCCTTTATGAA
CGGCACCGCGCCGATGGCGATTTACTCCACCTATATCCTTCCGGCTGTGATTAAAGAAGGCGACCCGAAA
AACGTCGGTTTCGTGGTGCCAACCGAGAAAAACTCTGCGGTCTACGGCATGTTGACCTCGCTGACCATTA
CCGCCGGGCAAAAGACCGAAGAGACGGAAGCAGCAGAAAAATTTGTCACCTTTATGGAGCAGGCAGACAA
CATTGCCGACTGGGTGATGATGTCGCCAGGTGCTGCGCTGCCGGTGAATAAAGCGGTGGTGACTACCGCC
ACCTGGAAAGACAACGACGTTATTAAGGCGCTGGGTGAACTACCGAATCAGCTAATCGGTGAACTGCCAA
ATATTCAGGTTTTTGGCGCAGTAGGGGATAAAAACTTTACCCGCATGGGTGATGTGACGGGTTCTGGCGT
GGTGAGTTCAATGGTGCATAACGTCACCGTGGGTAAAGCCGATCTCTCTACTACGCTGCAAGCGAGCCAG
AAAAAACTGGATGAACTGATCGAACAGCACTAA
# Upstream_100_bases:
CTGCATGGTCGGGATCTGATTAGTGAAGTTGATATATTGGGTAATGAAATAACGCTGCGCCCCTGGCAGG
TTATGTGGATTAAATAAAAAGGAACATCTC
# Blattner_No_Ontology:
Hypothetical, unclassified, unknown
# Gene_Position:
1369933-1371225 (Clockwise)
# Centisome_Position:
29.526
# Gene_Name:
ycjN
# GC_Content:
50.04%
# Metabolic_Importance:
Unknown
# Preceding_Gene:
ycjM
# Following_Gene:
ycjO
# Operon_Status:
Yes
# Operon_Components:
ycjM_ycjN_ycjO_ycjP_ycjQ_ycjR_ycjS_ycjT_ycjU_ycjV Ref: RegulonDB http://kinich.cifn.unam.mx:8850/db/regulondb_cgi.query_simple?v_organism=ECK12&v_table=3&v_name=ycjN
# Paralogues:
b3453 (ugpB) 24;
# Copy Number:
Not Available
# RNA_Copy_No.:
Not Available
# Genbank_ID_(DNA):
AE000229
# Genbank_ID_(Protein):
AAC74392.1
# SWISS_PROT_(AC_&_ID):
$ YCJN_ECOLI (P76042)
# 2D_Gel_Image:
Not Available
# Other_Databases:
- ECOCYC: EG13911
- EcoGene: EG13911
- EMBL: U00096
- InterPro: IPR006059; IPR006061
- Pfam: PF01547
- PIR: A64880
- PROSITE: PS01037
# Pfam_Domain/Function:
PF01547 Bacterial extracellular solute-binding protein
# Homologues:
Not Available
# Similarity:
Belongs to the bacterial solute-binding protein 1 family.
# EC_Number:
Not Available
# No._of_Amino_Acids:
430 (Translated Protein)
414 (Mature Protein)
# Molecular_Weight:
46809 45151
# Theoretical_pI:
4.67
# Theoretical_pI (Mature):
4.57
# Sequence:
// MIKSKIVLLSALVSCALISGCKEENKTNVSIEFMHSSVEQERQAVISKLIARFEKENPGI
// TVKQVPVEEDAYNTKVITLSRSGSLPEVIETSHDYAKVMDKEQLIDRKAVATVISNVGEG
// AFYDGVLRIVRTEDGSAWTGVPVSAWIGGIWYRKDVLAKAGLEEPKNWQQLLDVAQKLND
// PANKKYGIALPTAESVLTEQSFSQFALSNQANVFNAEGKITLDTPEMMQALTYYRDLTAN
// TMPGSNDIMEVKDAFMNGTAPMAIYSTYILPAVIKEGDPKNVGFVVPTEKNSAVYGMLTS
// LTITAGQKTEETEAAEKFVTFMEQADNIADWVMMSPGAALPVNKAVVTTATWKDNDVIKA
// LGELPNQLIGELPNIQVFGAVGDKNFTRMGDVTGSGVVSSMVHNVTVGKADLSTTLQASQ
// KKLDELIEQH
// /\
// LISGCKEENKTNVSIEFMHSSVEQERQAVISKLIARFEKENPGITVKQVPVEEDAYNTKV
// ITLSRSGSLPEVIETSHDYAKVMDKEQLIDRKAVATVISNVGEGAFYDGVLRIVRTEDGS
// AWTGVPVSAWIGGIWYRKDVLAKAGLEEPKNWQQLLDVAQKLNDPANKKYGIALPTAESV
// LTEQSFSQFALSNQANVFNAEGKITLDTPEMMQALTYYRDLTANTMPGSNDIMEVKDAFM
// NGTAPMAIYSTYILPAVIKEGDPKNVGFVVPTEKNSAVYGMLTSLTITAGQKTEETEAAE
// KFVTFMEQADNIADWVMMSPGAALPVNKAVVTTATWKDNDVIKALGELPNQLIGELPNIQ
// VFGAVGDKNFTRMGDVTGSGVVSSMVHNVTVGKADLSTTLQASQKKLDELIEQH
# PROSITE_Motif:
SBP_BACTERIAL_1; PATTERN. PS01037; Bacterial extracellular solute-binding proteins, family 1 signature. [GAP]-[LIVMFA]-[STAVDN]-x(4)-[GSAV]-[LIVMFY](2)-Y-[ND]-x(3)-[LIVMF]-x-PA [KNDE]. PDOC00796; //
# Important_Sites:
Binding Site protein ycjn
# Transmembrane:
Not Available
# Cys/Met_Content:
0.5 %Cys (Translated Protein)
3.5 %Met (Translated Protein)
4.0 %Cys+Met (Translated Protein)
0.2 %Cys (Mature Protein)
3.4 %Met (Mature Protein)
3.6 %Cys+Met (Mature Protein)
# Secondary_Structure:
>YCJN_ECOLI (Translated Protein)
MIKSKIVLLSALVSCALISGCKEENKTNVSIEFMHSSVEQERQAVISKLIARFEKENPGI
CCHHHHHHHHHHHHHHHHHHCCCCCCCCEEEEEEEECCCCCHHHHHHHHHHHHHHHCCCC
TVKQVPVEEDAYNTKVITLSRSGSLPEVIETSHDYAKVMDKEQLIDRKAVATVISNVGEG
EEEEEECCHHHHHHHHHHHHHCCCCCEEEEECCHHHHHHHHHHHCCCCCCCCCCCCCCCC
AFYDGVLRIVRTEDGSAWTGVPVSAWIGGIWYRKDVLAKAGLEEPKNWQQLLDVAQKLND
CCCCHHHHHHCCCCCCEEEEEEEECCCEEEEECHHHHHHCCCCCCCCHHHHHHHHHHHHH
PANKKYGIALPTAESVLTEQSFSQFALSNQANVFNAEGKITLDTPEMMQALTYYRDLTAN
CCCCEEEEECCCCCCCHHHHHHHHHHHCCCCCCCCCCCCEEECCHHHHHHHHHHHHHHHC
TMPGSNDIMEVKDAFMNGTAPMAIYSTYILPAVIKEGDPKNVGFVVPTEKNSAVYGMLTS
CCCCCCCHHHHHHHHHCCCCCEEECCCCCHHHHHCCCCCCCEEECCCCCCCCCEEEEEEE
LTITAGQKTEETEAAEKFVTFMEQADNIADWVMMSPGAALPVNKAVVTTATWKDNDVIKA
EEEEECCCCCCHHHHHHHHHHHHCCHHHHHHHHHCCCCCCCCCHHHHHCHHCCCCCCCCC
LGELPNQLIGELPNIQVFGAVGDKNFTRMGDVTGSGVVSSMVHNVTVGKADLSTTLQASQ
HHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHCCCCHHHHHHHHH
KKLDELIEQH
HHHHHHHHHC
/\
>YCJN_ECOLI (Mature Protein)
IKSKIVLLSALVSCALISGCKEENKTNVSIEFMHSSVEQERQAVISKLIARFEKENPGIT
CCHHHHHHHHHHHHHHHHHCCCCCCCCEEEEEEEECCCCCHHHHHHHHHHHHHHHCCCCE
VKQVPVEEDAYNTKVITLSRSGSLPEVIETSHDYAKVMDKEQLIDRKAVATVISNVGEGA
EEEEECCHHHHHHHHHHHHHCCCCCEEEEECCHHHHHHHHHHHCCCCCCCCCCCCCCCCC
FYDGVLRIVRTEDGSAWTGVPVSAWIGGIWYRKDVLAKAGLEEPKNWQQLLDVAQKLNDP
CCCHHHHHHCCCCCCEEEEEEEECCCEEEEECHHHHHHCCCCCCCCHHHHHHHHHHHHHC
ANKKYGIALPTAESVLTEQSFSQFALSNQANVFNAEGKITLDTPEMMQALTYYRDLTANT
CCCEEEEECCCCCCCHHHHHHHHHHHCCCCCCCCCCCCEEECCHHHHHHHHHHHHHHHCC
MPGSNDIMEVKDAFMNGTAPMAIYSTYILPAVIKEGDPKNVGFVVPTEKNSAVYGMLTSL
CCCCCCHHHHHHHHHCCCCCEEECCCCCHHHHHCCCCCCCEEECCCCCCCCCEEEEEEEE
TITAGQKTEETEAAEKFVTFMEQADNIADWVMMSPGAALPVNKAVVTTATWKDNDVIKAL
EEEECCCCCCHHHHHHHHHHHHCCHHHHHHHHHCCCCCCCCCHHHHHCHHCCCCCCCCCH
GELPNQLIGELPNIQVFGAVGDKNFTRMGDVTGSGVVSSMVHNVTVGKADLSTTLQASQK
HHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHCCCCHHHHHHHHHH
KLDELIEQH
HHHHHHHHC
# PDB_Accession:
& Not Available
# Resolution:
Not Available
# Structure_CLASS:
Alpha Beta
# Quaternary_Structure:
heterotrimeric ABC complex of ycjN and ycjO and ycjP
# Interacting_Partners:
1) ycjP, 2) ycjO,
# Cofactors:
Not Available
# Metals_Ions:
Not Available
# Kcat_Value_[1/min]:
Not Available
# Specific_Activity_[micromol/min/mg]:
Not Available
# Km_Value_[mM]:
Not Available
# Substrates:
Not Available
# Products:
Not Available
# Specific_Reaction:
Not Available
# General_Reaction:
Not Available
# Inhibitor:
Not Available
# Priority:
7.8
# Status:
Not Available
# Availability:
Not Available
#END_ECARDFILE
#BEGIN_ECARDFILE
# Entry_ID:
CC1013A.1
# Accession_No.:
UA0001013
# Name:
Fructose repressor
# Alternate_Names:
Catabolite repressor/activator
# General_Function:
Regulatory functions; Member of GalR/LacI; lambda repressor-like DNA-binding domains; Periplasmic binding protein-like I
# COG_Function:
Transcription (code K)
# COG_ID:
COG1609 Transcriptional regulators (Evalue = 0.0)
# Specific_Function:
Represses some operons but activates others. It is implicated in the regulation of a large number of operons encoding enzymes which comprise central pathways of carbon metabolism. Binds D-fructose as an inducer. This protein transcriptionally regulates genes aceBAK, adhE, edd-eda, epd-pgk, fruBKA, icdA, mtlADR, nirBDC-cysG, pckA, pfkA, ppsA, ptsHI-crr and pykF. Gene fruR is regulated by transcriptional attenuation.
# Riley_Gene_Function:
transcriptional regulator of the control of carbon and energy metabolism (GalR/LacI family); DNA-binding transcriptional dual regulator
# Riley_Cell_Function:
>>>
Metabolism
Energy metabolism (carbon)
Glycolysis
||
>>>
Metabolism
Energy metabolism (carbon)
Entner-Doudoroff pathway
||
>>>
Information transfer
RNA related
Transcription related
||
>>>
Regulation
Type of regulation
Transcriptional level
Activator
||
>>>
Regulation
Type of regulation
Transcriptional level
Repressor
||
>>>
Regulation
Genetic unit regulated
Regulon (a network of operons encoding related functions)
||
>>>
Location of gene products
Cytoplasm
# Gene_Ontology:
>>>
Function: binding
Function: nucleic acid binding
Function: DNA binding
Function: transcription factor activity
||
>>>
Function: transcription regulator activity
Function: transcription factor activity
||
>>>
Process: physiological process
Process: metabolism
Process: regulation of metabolism
Process: regulation of cellular metabolism
Process: regulation of nucleobase, nucleoside, nucleotide and nucleic acid metabolism
Process: regulation of transcription
Process: regulation of transcription, DNA-dependent
||
>>>
Process: cellular metabolism
Process: nucleobase, nucleoside, nucleotide and nucleic acid metabolism
Process: transcription
Process: transcription, DNA-dependent
Process: regulation of transcription, DNA-dependent
||
>>>
Process: regulation of transcription
Process: regulation of transcription, DNA-dependent
||
>>>
Process: regulation of nucleobase, nucleoside, nucleotide and nucleic acid metabolism
Process: regulation of transcription
Process: regulation of transcription, DNA-dependent
||
>>>
Process: regulation of cellular metabolism
Process: regulation of nucleobase, nucleoside, nucleotide and nucleic acid metabolism
Process: regulation of transcription
Process: regulation of transcription, DNA-dependent
||
>>>
Process: primary metabolism
Process: nucleobase, nucleoside, nucleotide and nucleic acid metabolism
Process: transcription
Process: transcription, DNA-dependent
Process: regulation of transcription, DNA-dependent
||
>>>
Process: regulation of transcription
Process: regulation of transcription, DNA-dependent
||
>>>
Process: regulation of nucleobase, nucleoside, nucleotide and nucleic acid metabolism
Process: regulation of transcription
Process: regulation of transcription, DNA-dependent
||
>>>
Process: regulation of physiological process
Process: regulation of metabolism
Process: regulation of cellular metabolism
Process: regulation of nucleobase, nucleoside, nucleotide and nucleic acid metabolism
Process: regulation of transcription
Process: regulation of transcription, DNA-dependent
||
>>>
Process: regulation of cellular physiological process
Process: regulation of cellular metabolism
Process: regulation of nucleobase, nucleoside, nucleotide and nucleic acid metabolism
Process: regulation of transcription
Process: regulation of transcription, DNA-dependent
||
>>>
Process: cellular physiological process
Process: cellular metabolism
Process: nucleobase, nucleoside, nucleotide and nucleic acid metabolism
Process: transcription
Process: transcription, DNA-dependent
Process: regulation of transcription, DNA-dependent
||
>>>
Process: regulation of transcription
Process: regulation of transcription, DNA-dependent
||
>>>
Process: regulation of nucleobase, nucleoside, nucleotide and nucleic acid metabolism
Process: regulation of transcription
Process: regulation of transcription, DNA-dependent
||
>>>
Process: regulation of cellular metabolism
Process: regulation of nucleobase, nucleoside, nucleotide and nucleic acid metabolism
Process: regulation of transcription
Process: regulation of transcription, DNA-dependent
||
>>>
Process: regulation of cellular physiological process
Process: regulation of cellular metabolism
Process: regulation of nucleobase, nucleoside, nucleotide and nucleic acid metabolism
Process: regulation of transcription
Process: regulation of transcription, DNA-dependent
||
>>>
Process: cellular process
Process: regulation of cellular process
Process: regulation of cellular physiological process
Process: regulation of cellular metabolism
Process: regulation of nucleobase, nucleoside, nucleotide and nucleic acid metabolism
Process: regulation of transcription
Process: regulation of transcription, DNA-dependent
||
>>>
Process: cellular physiological process
Process: cellular metabolism
Process: nucleobase, nucleoside, nucleotide and nucleic acid metabolism
Process: transcription
Process: transcription, DNA-dependent
Process: regulation of transcription, DNA-dependent
||
>>>
Process: regulation of transcription
Process: regulation of transcription, DNA-dependent
||
>>>
Process: regulation of nucleobase, nucleoside, nucleotide and nucleic acid metabolism
Process: regulation of transcription
Process: regulation of transcription, DNA-dependent
||
>>>
Process: regulation of cellular metabolism
Process: regulation of nucleobase, nucleoside, nucleotide and nucleic acid metabolism
Process: regulation of transcription
Process: regulation of transcription, DNA-dependent
||
>>>
Process: regulation of cellular physiological process
Process: regulation of cellular metabolism
Process: regulation of nucleobase, nucleoside, nucleotide and nucleic acid metabolism
Process: regulation of transcription
Process: regulation of transcription, DNA-dependent
||
>>>
Process: regulation of biological process
Process: regulation of physiological process
Process: regulation of metabolism
Process: regulation of cellular metabolism
Process: regulation of nucleobase, nucleoside, nucleotide and nucleic acid metabolism
Process: regulation of transcription
Process: regulation of transcription, DNA-dependent
||
>>>
Process: regulation of cellular physiological process
Process: regulation of cellular metabolism
Process: regulation of nucleobase, nucleoside, nucleotide and nucleic acid metabolism
Process: regulation of transcription
Process: regulation of transcription, DNA-dependent
||
>>>
Process: regulation of cellular process
Process: regulation of cellular physiological process
Process: regulation of cellular metabolism
Process: regulation of nucleobase, nucleoside, nucleotide and nucleic acid metabolism
Process: regulation of transcription
Process: regulation of transcription, DNA-dependent
||
>>>
Component: cell
Component: intracellular
# Location:
Cytoplasm
# Blattner_Number:
b0080
# Gene_Sequence:
GTGAAACTGGATGAAATCGCTCGGCTGGCGGGAGTGTCGCGGACCACTGCAAGCTATGTTATTAACGGCA
AAGCGAAGCAATACCGTGTGAGCGACAAAACCGTTGAAAAAGTCATGGCTGTGGTGCGTGAGCACAATTA
CCACCCGAACGCCGTGGCAGCTGGGCTTCGTGCTGGACGCACACGTTCTATTGGTCTTGTGATCCCCGAT
CTGGAGAACACCAGCTATACCCGCATCGCTAACTATCTTGAACGCCAGGCGCGGCAACGGGGTTATCAAC
TGCTGATTGCCTGCTCAGAAGATCAGCCAGACAACGAAATGCGGTGCATTGAGCACCTTTTACAGCGTCA
GGTTGATGCCATTATTGTTTCGACGTCGTTGCCTCCTGAGCATCCTTTTTATCAACGCTGGGCTAACGAC
CCGTTCCCGATTGTCGCGCTGGACCGCGCCCTCGATCGTGAACACTTCACCAGCGTGGTTGGTGCCGATC
AGGATGATGCCGAAATGCTGGCGGAAGAGTTACGTAAGTTTCCCGCCGAGACGGTGCTTTATCTTGGTGC
GCTACCGGAGCTTTCTGTCAGCTTCCTGCGTGAACAAGGTTTCCGTACTGCCTGGAAAGATGATCCGCGC
GAAGTGCATTTCCTGTATGCCAACAGCTATGAGCGGGAGGCGGCTGCCCAGTTATTCGAAAAATGGCTGG
AAACGCATCCGATGCCGCAGGCGCTGTTCACAACGTCGTTTGCGTTGTTGCAAGGAGTGATGGATGTCAC
GCTGCGTCGCGACGGCAAACTGCCTTCTGACCTGGCAATTGCCACCTTTGGCGATAACGAACTGCTCGAC
TTCTTACAGTGTCCGGTGCTGGCAGTGGCTCAACGTCACCGCGATGTCGCAGAGCGTGTGCTGGAGATTG
TCCTGGCAAGCCTGGACGAACCGCGTAAGCCAAAACCTGGTTTAACGCGCATTAAACGTAATCTCTATCG
CCGCGGCGTGCTCAGCCGTAGCTAA
# Upstream_100_bases:
AAGCAGTTGCCGCAGTTAATTTTCTGCGCTTAGATGTTAATGAATTTAACCCATACCAGTACAATGGCTA
TGGTTTTTACATTTTACGCAAGGGGCAATT
# Blattner_No_Ontology:
Energy metabolism
# Gene_Position:
88028-89032 (Clockwise)
# Centisome_Position:
1.897
# Gene_Name:
fruR or cra or fruC or shl
# GC_Content:
54.93%
# Metabolic_Importance:
Non_Essential
# Preceding_Gene:
fruL
# Following_Gene:
mraZ
# Operon_Status:
No
# Operon_Components:
None
# Paralogues:
b3753 (rbsR) 27; b1320 (ycjW) 23; b1658 (purR) 22; b3934 (cytR) 23; b2714 (ascG) 24; b4264 (idnR) 24; b2837 (galR) 23; b2151 (galS) 23; b3438 (gntR) 24; b0345 (lacI) 23; b3751 (rbsB) 21;
# Copy Number:
Unknown
# RNA_Copy_No.:
Log phase (2max): 0.03
Stationary phase (2max): 0.07
Ref: Nature Biotech., 18, 1262-68, Dec. 2000 (PMID=11101804)
# Genbank_ID_(DNA):
G1786268
# Genbank_ID_(Protein):
AAC73191.1
# SWISS_PROT_(AC_&_ID):
$ FRUR_ECOLI (P0ACP1)
# 2D_Gel_Image:
Not Available
# Other_Databases:
- ECOCYC: EG10338
- EcoGene: EG10338
- EMBL: M35034
- InterPro: IPR012781; IPR000843; IPR010982; IPR001761
- Pfam: PF00356; PF00532
- PIR: JU0298
- PROSITE: PS00356
# Pfam_Domain/Function:
PF00356 Bacterial regulatory proteins, lacI family; PF00532 Periplasmic binding proteins and sugar binding domain of the LacI family;
# Homologues:
Not Available
# Similarity:
Contains 1 HTH lacI-type DNA-binding domain.
# EC_Number:
Not Available
# No._of_Amino_Acids:
334 (Translated Protein)
334 (Mature Protein)
# Molecular_Weight:
38000 38000
# Theoretical_pI:
6.96
# Theoretical_pI (Mature):
6.96
# Sequence:
// MKLDEIARLAGVSRTTASYVINGKAKQYRVSDKTVEKVMAVVREHNYHPNAVAAGLRAGR
// TRSIGLVIPDLENTSYTRIANYLERQARQRGYQLLIACSEDQPDNEMRCIEHLLQRQVDA
// IIVSTSLPPEHPFYQRWANDPFPIVALDRALDREHFTSVVGADQDDAEMLAEELRKFPAE
// TVLYLGALPELSVSFLREQGFRTAWKDDPREVHFLYANSYEREAAAQLFEKWLETHPMPQ
// ALFTTSFALLQGVMDVTLRRDGKLPSDLAIATFGDNELLDFLQCPVLAVAQRHRDVAERV
// LEIVLASLDEPRKPKPGLTRIKRNLYRRGVLSRS
// /\
// MKLDEIARLAGVSRTTASYVINGKAKQYRVSDKTVEKVMAVVREHNYHPNAVAAGLRAGR
// TRSIGLVIPDLENTSYTRIANYLERQARQRGYQLLIACSEDQPDNEMRCIEHLLQRQVDA
// IIVSTSLPPEHPFYQRWANDPFPIVALDRALDREHFTSVVGADQDDAEMLAEELRKFPAE
// TVLYLGALPELSVSFLREQGFRTAWKDDPREVHFLYANSYEREAAAQLFEKWLETHPMPQ
// ALFTTSFALLQGVMDVTLRRDGKLPSDLAIATFGDNELLDFLQCPVLAVAQRHRDVAERV
// LEIVLASLDEPRKPKPGLTRIKRNLYRRGVLSRS
# PROSITE_Motif:
HTH_LACI_FAMILY; PATTERN. PS00356; Bacterial regulatory proteins, lacI family signature. [LIVM]-x-[DE]-[LIVM]-A-x(2)-[STAGV]-x-V-[GSTP]-x(2)-[STAG]-[LIVMA]-x(2)-PA [LIVMFYAN]-[LIVMC]. PDOC00366; //
# Important_Sites:
Not Available
# Transmembrane:
Not Available
# Cys/Met_Content:
0.9 %Cys (Translated Protein)
1.8 %Met (Translated Protein)
2.7 %Cys+Met (Translated Protein)
0.9 %Cys (Mature Protein)
1.8 %Met (Mature Protein)
2.7 %Cys+Met (Mature Protein)
# Secondary_Structure_(PDB):
MKLDEIARLAGVSRTTASYVINGKAKQYRVSDKTVEKVMAVVREHNYHPN
CCHHHHHHHHCCCHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHHCCCCC
# PDB_Accession:
& 1UXC
# Resolution:
NMR
# Structure_CLASS:
Mainly Alpha
# Quaternary_Structure:
homotetrameric A4 complex of fruR
# Interacting_Partners:
1) fruR, 2) araF (hypothetical), 3) ytfJ (hypothetical),
# Cofactors:
Not Available
# Metals_Ions:
Not Available
# Kcat_Value_[1/min]:
Not Available
# Specific_Activity_[micromol/min/mg]:
Not Available
# Km_Value_[mM]:
Not Available
# Substrates:
DNA
# Products:
Not Available
# Specific_Reaction:
Protein + DNA = Protein-DNA
# General_Reaction:
Not Available
# Inhibitor:
Not Available
# Priority:
0.0
# Status:
Selected, Cloned, Expressed, Soluble, Purified, Crystallized
# Availability:
Midwest Center for Structural Genomics
#END_ECARDFILE
#BEGIN_ECARDFILE
# Entry_ID:
CC1962A.1
# Accession_No.:
UA0001962
# Name:
NADH-quinone oxidoreductase chain E
# Alternate_Names:
NADH dehydrogenase I, chain E; NDH-1, chain E; NUO5
# General_Function:
Energy metabolism; Member of the Proton-translocating NADH Dehydrogenase (NDH) Family; Thioredoxin-like
# COG_Function:
Energy production and conversion (code C)
# COG_ID:
COG1905 NADH:ubiquinone oxidoreductase 24 kD subunit (Evalue = 9e-96)
# Specific_Function:
NDH-1 shuttles electrons from NADH, via FMN and iron- sulfur (Fe-S) centers, to quinones in the respiratory chain. The immediate electron acceptor for the enzyme in this species is believed to be ubiquinone. Couples the redox reaction to proton translocation (for every two electrons transferred, four hydrogen ions are translocated across the cytoplasmic membrane), and thus conserves the redox energy in a proton gradient.
# Riley_Gene_Function:
NADH dehydrogenase I chain E; NADH:ubiquinone oxidoreductase, chain E
# Riley_Cell_Function:
>>>
Metabolism
Energy metabolism (carbon)
Aerobic respiration
||
>>>
Metabolism
Energy metabolism (carbon)
Anaerobic respiration
||
>>>
Metabolism
Energy production/transport
Electron donor
||
>>>
Transport
Primary Active Transporters
Oxidoreduction-driven Active Transporters
The Proton- or sodium ion-translocating NADH Dehydrogenase (NDH) Family
||
>>>
Transport
substrate
Na+
||
>>>
Location of gene products
Cytoplasm
# Gene_Ontology:
>>>
Function: catalytic activity
Function: oxidoreductase activity
Function: electron carrier activity
Function: NADH dehydrogenase activity
Function: NADH dehydrogenase (quinone) activity
Function: NADH dehydrogenase (ubiquinone) activity
||
>>>
Function: oxidoreductase activity, acting on NADH or NADPH
Function: NADH dehydrogenase activity
Function: NADH dehydrogenase (quinone) activity
Function: NADH dehydrogenase (ubiquinone) activity
||
>>>
Function: oxidoreductase activity, acting on NADH or NADPH, quinone or similar compound as acceptor
Function: NADH dehydrogenase (ubiquinone) activity
||
>>>
Process: physiological process
Process: metabolism
Process: cellular metabolism
Process: generation of precursor metabolites and energy
Process: electron transport
Process: ATP synthesis coupled electron transport
Process: ATP synthesis coupled electron transport (sensu Eukaryota)
Process: mitochondrial electron transport, NADH to ubiquinone
||
>>>
Process: oxidative phosphorylation
Process: ATP synthesis coupled electron transport
Process: ATP synthesis coupled electron transport (sensu Eukaryota)
Process: mitochondrial electron transport, NADH to ubiquinone
||
>>>
Process: phosphorus metabolism
Process: phosphate metabolism
Process: phosphorylation
Process: oxidative phosphorylation
Process: ATP synthesis coupled electron transport
Process: ATP synthesis coupled electron transport (sensu Eukaryota)
Process: mitochondrial electron transport, NADH to ubiquinone
||
>>>
Process: cellular physiological process
Process: transport
Process: electron transport
Process: ATP synthesis coupled electron transport
Process: ATP synthesis coupled electron transport (sensu Eukaryota)
Process: mitochondrial electron transport, NADH to ubiquinone
||
>>>
Process: cellular metabolism
Process: generation of precursor metabolites and energy
Process: electron transport
Process: ATP synthesis coupled electron transport
Process: ATP synthesis coupled electron transport (sensu Eukaryota)
Process: mitochondrial electron transport, NADH to ubiquinone
||
>>>
Process: oxidative phosphorylation
Process: ATP synthesis coupled electron transport
Process: ATP synthesis coupled electron transport (sensu Eukaryota)
Process: mitochondrial electron transport, NADH to ubiquinone
||
>>>
Process: phosphorus metabolism
Process: phosphate metabolism
Process: phosphorylation
Process: oxidative phosphorylation
Process: ATP synthesis coupled electron transport
Process: ATP synthesis coupled electron transport (sensu Eukaryota)
Process: mitochondrial electron transport, NADH to ubiquinone
||
>>>
Process: localization
Process: establishment of localization
Process: transport
Process: electron transport
Process: ATP synthesis coupled electron transport
Process: ATP synthesis coupled electron transport (sensu Eukaryota)
Process: mitochondrial electron transport, NADH to ubiquinone
||
>>>
Process: cellular process
Process: cellular physiological process
Process: transport
Process: electron transport
Process: ATP synthesis coupled electron transport
Process: ATP synthesis coupled electron transport (sensu Eukaryota)
Process: mitochondrial electron transport, NADH to ubiquinone
||
>>>
Process: cellular metabolism
Process: generation of precursor metabolites and energy
Process: electron transport
Process: ATP synthesis coupled electron transport
Process: ATP synthesis coupled electron transport (sensu Eukaryota)
Process: mitochondrial electron transport, NADH to ubiquinone
||
>>>
Process: oxidative phosphorylation
Process: ATP synthesis coupled electron transport
Process: ATP synthesis coupled electron transport (sensu Eukaryota)
Process: mitochondrial electron transport, NADH to ubiquinone
||
>>>
Process: phosphorus metabolism
Process: phosphate metabolism
Process: phosphorylation
Process: oxidative phosphorylation
Process: ATP synthesis coupled electron transport
Process: ATP synthesis coupled electron transport (sensu Eukaryota)
Process: mitochondrial electron transport, NADH to ubiquinone
||
>>>
Component: Not Available
# Location:
Cytoplasm
# Blattner_Number:
b2285
# Gene_Sequence:
ATGCACGAGAATCAACAACCACAAACCGAGGCTTTTGAGCTGAGTGCGGCAGAGCGTGAAGCGATCGAGC
ACGAGATGCACCACTACGAAGACCCGCGTGCGGCGTCCATTGAAGCGCTGAAAATCGTTCAGAAGCAGCG
TGGCTGGGTGCCGGATGGTGCGATCCACGCGATCGCCGATGTGCTGGGTATTCCGGCAAGCGACGTCGAA
GGTGTGGCAACGTTCTACAGTCAGATCTTCCGCCAGCCGGTTGGTCGCCATGTGATCCGTTATTGTGACA
GCGTGGTCTGTCATATCAACGGTTATCAGGGTATTCAGGCGGCGCTCGAGAAAAAGCTGAACATCAAACC
AGGGCAAACGACATTTGATGGCCGCTTTACGCTGCTGCCAACTTGCTGCCTGGGGAACTGTGATAAAGGG
CCAAACATGATGATCGATGAGGACACTCACGCGCATCTGACCCCGGAAGCGATCCCTGAACTGCTGGAGC
GGTATAAATGA
# Upstream_100_bases:
TGCAGCAAATTCCGGCGGCGATCCGCGGCAGCCTGGTGTCTGACCTGATTGTTTATCTGGGCAGTATCGA
TTTTGTTATGTCAGATGTGGACCGCTAATT
# Blattner_No_Ontology:
Energy metabolism
# Gene_Position:
2399574-2400074 (Counter Clockwise)
# Centisome_Position:
51.729
# Gene_Name:
nuoE
# GC_Content:
55.29%
# Metabolic_Importance:
Non_Essential
# Preceding_Gene:
nuoF
# Following_Gene:
nuoC
# Operon_Status:
Yes
# Operon_Components:
nuoN_nuoM_nuoL_nuoK_nuoJ_nuoI_nuoH_nuoG_nuoF_nuoE_nuoC_nuoB_nuoA Ref: Center for Information Biology and DNA Data Bank of Japan, National Institute of Genetics http://www.cib.nig.ac.jp/dda/taitoh/ecoli.operon.html
# Paralogues:
None
# Copy Number:
Unknown
# RNA_Copy_No.:
Log phase (2max): 2.01
Stationary phase (2max): 0.57
Ref: Nature Biotech., 18, 1262-68, Dec. 2000 (PMID=11101804)
# Genbank_ID_(DNA):
G1788621
# Genbank_ID_(Protein):
AAC75345.1
# SWISS_PROT_(AC_&_ID):
$ NUOE_ECOLI (P0AFD1)
# 2D_Gel_Image:
Not Available
# Other_Databases:
- ECOCYC: EG12086
- EcoGene: EG12086
- EMBL: X68301
- InterPro: IPR002023; IPR012336; IPR012335
- Pfam: PF01257
- PIR: C65000
- PROSITE: PS01099
# Pfam_Domain/Function:
PF01257 Respiratory-chain NADH dehydrogenase 24 Kd subunit
# Homologues:
Organism=Homo sapiens, GI10835025, Length=249, Positives=57%, Blast Score=103
Organism=Caenorhabditis elegans, GI17561328, Length=239, Positives=56%, Blast Score=111
Organism=Mus musculus, GI51770347, Length=258, Positives=54%, Blast Score=93.6
Organism=Drosophila melanogaster, GI18859877, Length=242, Positives=54%, Blast Score=101
Organism=Drosophila melanogaster, GI21355353, Length=238, Positives=52%, Blast Score=88.2
# Similarity:
Belongs to the complex I 24 kDa subunit family.
# EC_Number:
1.6.99.5
# No._of_Amino_Acids:
166 (Translated Protein)
166 (Mature Protein)
# Molecular_Weight:
18590 18590
# Theoretical_pI:
5.50
# Theoretical_pI (Mature):
5.50
# Sequence:
// MHENQQPQTEAFELSAAEREAIEHEMHHYEDPRAASIEALKIVQKQRGWVPDGAIHAIAD
// VLGIPASDVEGVATFYSQIFRQPVGRHVIRYCDSVVCHINGYQGIQAALEKKLNIKPGQT
// TFDGRFTLLPTCCLGNCDKGPNMMIDEDTHAHLTPEAIPELLERYK
// /\
// MHENQQPQTEAFELSAAEREAIEHEMHHYEDPRAASIEALKIVQKQRGWVPDGAIHAIAD
// VLGIPASDVEGVATFYSQIFRQPVGRHVIRYCDSVVCHINGYQGIQAALEKKLNIKPGQT
// TFDGRFTLLPTCCLGNCDKGPNMMIDEDTHAHLTPEAIPELLERYK
# PROSITE_Motif:
COMPLEX1_24K; PATTERN. PS01099; Respiratory-chain NADH dehydrogenase 24 Kd subunit signature. D-x(2)-F-[STK]-x(5)-C-[LM]-G-x-C-x(2)-[GA]-P. PDOC00843; //
# Important_Sites:
Not Available
# Transmembrane:
Not Available
# Cys/Met_Content:
3.0 %Cys (Translated Protein)
2.4 %Met (Translated Protein)
5.4 %Cys+Met (Translated Protein)
3.0 %Cys (Mature Protein)
2.4 %Met (Mature Protein)
5.4 %Cys+Met (Mature Protein)
# Secondary_Structure:
>NUOE_ECOLI (Translated Protein)
MHENQQPQTEAFELSAAEREAIEHEMHHYEDPRAASIEALKIVQKQRGWVPDGAIHAIAD
CCCCCCCCCCCCCCCHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHH
VLGIPASDVEGVATFYSQIFRQPVGRHVIRYCDSVVCHINGYQGIQAALEKKLNIKPGQT
HHCCCHHHHHHHHHHCCCCCCCCCCCEEEEEECCHHHHHHHHHHHHHHHHHHCCCCCCCC
TFDGRFTLLPTCCLGNCDKGPNMMIDEDTHAHLTPEAIPELLERYK
CCCCEEEEEEEECCCCCCCCCEEEECCEECCCCCHHHHHHHHHHCC
/\
>NUOE_ECOLI (Mature Protein)
MHENQQPQTEAFELSAAEREAIEHEMHHYEDPRAASIEALKIVQKQRGWVPDGAIHAIAD
CCCCCCCCCCCCCCCHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHH
VLGIPASDVEGVATFYSQIFRQPVGRHVIRYCDSVVCHINGYQGIQAALEKKLNIKPGQT
HHCCCHHHHHHHHHHCCCCCCCCCCCEEEEEECCHHHHHHHHHHHHHHHHHHCCCCCCCC
TFDGRFTLLPTCCLGNCDKGPNMMIDEDTHAHLTPEAIPELLERYK
CCCCEEEEEEEECCCCCCCCCEEEECCEECCCCCHHHHHHHHHHCC
# PDB_Accession:
& Not Available
# Resolution:
Not Available
# Structure_CLASS:
Alpha Beta
# Quaternary_Structure:
hetero-13meric ABCDEFGHIJKLM complex of nuoA and nuoB and nuoC and nuoE and nuoF and nuoG and nuoH and nuoI and nuoJ and nuoK and nuoL and nuoM and nuoN
# Interacting_Partners:
1) nuoA, 2) nuoB, 3) nuoC, 4) nuoN, 5) nuoF, 6) nuoG, 7) nuoH, 8) nuoI, 9) nuoJ, 10) nuoK, 11) nuoL, 12) nuoM,
# Cofactors:
--FAD --NADH
# Metals_Ions:
--Mg2+
# Kcat_Value_[1/min]:
Not Available
# Specific_Activity_[micromol/min/mg]:
Not Available
# Km_Value_[mM]:
Not Available
# Substrates:
NADH + ubiquinone
# Products:
NAD+ + ubiquinol
# Specific_Reaction:
NADH + ubiquinone = NAD+ + ubiquinol
# General_Reaction:
Redox reaction;
# Inhibitor:
--Liponox DCH
# Priority:
6.5
# Status:
Not Available
# Availability:
Not Available
#END_ECARDFILE
#BEGIN_ECARDFILE
# Entry_ID:
CC4009A.2
# Accession_No.:
UA0004009
# Name:
tRNA (guanine-N(7)-)-methyltransferase
# Alternate_Names:
guanine-N7; tRNAm7G46
# General_Function:
Not Available
# COG_Function:
General function prediction only (code R)
# COG_ID:
COG0220 Predicted S-adenosylmethionine-dependent methyltransferase (Evalue = 1e-140)
# Specific_Function:
Catalyzes the formation of N(7)-methylguanine at position 46 (m7G46) in tRNA.
# Riley_Gene_Function:
putative methyltransferase
# Riley_Cell_Function:
>>>
Not Available
# Gene_Ontology:
>>>
Function: catalytic activity
Function: transferase activity
Function: transferase activity, transferring one-carbon groups
Function: methyltransferase activity
||
>>>
Process: Not Available
||
>>>
Component: Not Available
# Location:
Cytoplasm
# Blattner_Number:
b2960
# Gene_Sequence:
AAAACGACGTCATTTCACCGGAATTTGATGAAAACGGCCGCCCACTGCGCCGTATCCGTAGTTTTGTGCG
CCGCCAGGGGCGACTGACCAAAGGCCAGGAACATGCGCTGGAAAACTACTGGCCGGTGATGGGCGTTGAG
TTCAGCGAAGATATGCTGGATTTCCCCGCGCTTTTTGGCCGTGAAGCGCCGGTGACGCTTGAGATTGGTT
TTGGCATGGGGGCGTCGCTGGTGGCAATGGCTAAAGATCGCCCTGAGCAGGACTTCCTCGGCATTGAAGT
GCATTCACCGGGCGTTGGTGCGTGCCTGGCTTCTGCGCATGAAGAAGGTTTAAGCAACCTGCGCGTGATG
TGTCACGATGCGGTTGAAGTGCTGCATAAAATGATTCCTGACAATTCATTGCGCATGGTGCAGCTCTTTT
TCCCTGACCCGTGGCACAAAGCGCGCCATAATAAACGCCGTATCGTTCAGGTGCCGTTTGCCGAACTGGT
AAAAAGCAAACTGCAGCTGGGGGGCGTATTCCATATGGCGACCGACTGGGAACCTTATGCGGAACATATG
CTTGAAGTGATGTCTTCTATTGACGGTTATAAAAACCTGTCAGAGAGCAATGATTACGTACCGCGTCCGG
CATCACGTCCGGTGACGAAATTTGAACAACGTGGTCATCGTCTTGGTCACGGAGTATGGGACTTAATGTT
CGAGAGGGTGAAATAATGGC
# Upstream_100_bases:
CCGGAACTTTCCGCAGCCACGGCCTTATCATGCTTGCATCCGGCAACTAACTTTGGATAATGCCCGTTTT
CAGAACACTTTCACAAGCGACTAAACCTTT
# Blattner_No_Ontology:
Hypothetical, unclassified, unknown
# Gene_Position:
3100155-3100874 (Counter Clockwise)
# Centisome_Position:
66.834
# Gene_Name:
trmB
# GC_Content:
52.92%
# Metabolic_Importance:
Unknown
# Preceding_Gene:
yggL
# Following_Gene:
mutY
# Operon_Status:
Yes
# Operon_Components:
yggL_yggH Ref: RegulonDB http://kinich.cifn.unam.mx:8850/db/regulondb_cgi.query_simple?v_organism=ECK12&v_table=3&v_name=yggH
# Paralogues:
None
# Copy Number:
Not Available
# RNA_Copy_No.:
Log phase (2max): 0.14
Stationary phase (2max): 0.10
Genomic DNA hybridization (2max): 0.16
Not Available
# Genbank_ID_(DNA):
AP002563
# Genbank_ID_(Protein):
BAB37259.1
# SWISS_PROT_(AC_&_ID):
$ TRMB_ECOLI (P0A8I5)
# 2D_Gel_Image:
Not Available
# Other_Databases:
- ECOCYC: EG11779
- EcoGene: EG11779
- EMBL: U28377
- InterPro: IPR004395; IPR003358
- Pfam: PF02390
- PIR: G65081
# Pfam_Domain/Function:
PF02390 Putative methyltransferase
# Homologues:
Not Available
# Similarity:
Belongs to the methyltransferase superfamily. TrmB family.
# EC_Number:
2.1.1.33
# No._of_Amino_Acids:
239 (Translated Protein)
239 (Mature Protein)
# Molecular_Weight:
27308 27308
# Theoretical_pI:
6.92
# Theoretical_pI (Mature):
6.92
# Sequence:
// MKNDVISPEFDENGRPLRRIRSFVRRQGRLTKGQEHALENYWPVMGVEFSEDMLDFPALF
// GREAPVTLEIGFGMGASLVAMAKDRPEQDFLGIEVHSPGVGACLASAHEEGLSNLRVMCH
// DAVEVLHKMIPDNSLRMVQLFFPDPWHKARHNKRRIVQVPFAELVKSKLQLGGVFHMATD
// WEPYAEHMLEVMSSIDGYKNLSESNDYVPRPASRPVTKFEQRGHRLGHGVWDLMFERVK
// /\
// MKNDVISPEFDENGRPLRRIRSFVRRQGRLTKGQEHALENYWPVMGVEFSEDMLDFPALF
// GREAPVTLEIGFGMGASLVAMAKDRPEQDFLGIEVHSPGVGACLASAHEEGLSNLRVMCH
// DAVEVLHKMIPDNSLRMVQLFFPDPWHKARHNKRRIVQVPFAELVKSKLQLGGVFHMATD
// WEPYAEHMLEVMSSIDGYKNLSESNDYVPRPASRPVTKFEQRGHRLGHGVWDLMFERVK
# PROSITE_Motif:
Hypothetical hesB/yadR/yfhF family signature.
F-x-[LIVMFY]-x-N-[PG]-[NSKQ]-x(4)-C-x-C-[GS]-x-S-F.
# Important_Sites:
Not Available
# Transmembrane:
Not Available
# Cys/Met_Content:
0.8 %Cys (Translated Protein)
5.0 %Met (Translated Protein)
5.9 %Cys+Met (Translated Protein)
0.8 %Cys (Mature Protein)
5.0 %Met (Mature Protein)
5.9 %Cys+Met (Mature Protein)
# Secondary_Structure:
>TRMB4_ECOLI (Translated Protein)
MKNDVISPEFDENGRPLRRIRSFVRRQGRLTKGQEHALENYWPVMGVEFSEDMLDFPALF
CCCCCCCCCCCCCCCCCCCEEEEEEECCCCCHHHHHHHHHHHHHHCCCCCCCCCCHHHHC
GREAPVTLEIGFGMGASLVAMAKDRPEQDFLGIEVHSPGVGACLASAHEEGLSNLRVMCH
CCCCCEEEEEECCCHHHHHHHHHHCCCCCEEEEEECHHHHHHHHHHHHHCCCCCEEEEEC
DAVEVLHKMIPDNSLRMVQLFFPDPWHKARHNKRRIVQVPFAELVKSKLQLGGVFHMATD
CHHHHHHHHCCCCCEEEEEEECCCCCCCCCCCCCEECCHHHHHHHHHHCCCCCEEEEEEC
WEPYAEHMLEVMSSIDGYKNLSESNDYVPRPASRPVTKFEQRGHRLGHGVWDLMFERVK
CHHHHHHHHHHHHHCCCCEEECCCCCCCCCCCCCCCCHHHHHHHHCCCCCHHHEEEECC
/\
>TRMB_ECOLI (Mature Protein)
KNDVISPEFDENGRPLRRIRSFVRRQGRLTKGQEHALENYWPVMGVEFSEDMLDFPALFG
CCCEECEECCCCCCCCCCEEEEEEECCCCCHHHHHHHHHHHHHHCCCCCCCCCCHHHHCC
REAPVTLEIGFGMGASLVAMAKDRPEQDFLGIEVHSPGVGACLASAHEEGLSNLRVMCHD
CCCCEEEEEECCCHHHHHHHHHHCCCCCEEEEEECHHHHHHHHHHHHHCCCCCEEEEECC
AVEVLHKMIPDNSLRMVQLFFPDPWHKARHNKRRIVQVPFAELVKSKLQLGGVFHMATDW
HHHHHHHHCCCCCEEEEEEECCCCCCCCCCCCCEECCHHHHHHHHHHCCCCCEEEEEECC
EPYAEHMLEVMSSIDGYKNLSESNDYVPRPASRPVTKFEQRGHRLGHGVWDLMFERVK
HHHHHHHHHHHHHCCCCEEECCCCCCCCCCCCCCCCHHHHHHHHCCCCCHHHEEEECC
# PDB_Accession:
& Not Available
# Resolution:
Not Available
# Structure_CLASS:
Alpha Beta
# Quaternary_Structure:
Not Available
# Interacting_Partners:
Not Available
# Cofactors:
--S-adenosyl-L-methionine
# Metals_Ions:
--Ca2+ --Mg2+ --Mn2+
# Kcat_Value_[1/min]:
Not Available
# Specific_Activity_[micromol/min/mg]:
Not Available
# Km_Value_[mM]:
Not Available
# Substrates:
Not Available
# Products:
Not Available
# Specific_Reaction:
Not Available
# General_Reaction:
Not Available
# Inhibitor:
--more --p-hydroxymercuribenzoate --S-adenosyl-L-homocysteine --spleen phosphodiesterase
# Priority:
6.9
# Status:
Not Available
# Availability:
Not Available
#END_ECARDFILE
#BEGIN_ECARDFILE
# Entry_ID:
CC2131A.1
# Accession_No.:
UA0002131
# Name:
UPF0225 protein ychJ
# Alternate_Names:
Not Available
# General_Function:
Not Available
# COG_Function:
Function unknown (code S)
# COG_ID:
COG3012 Uncharacterized protein conserved in bacteria (Evalue = 1e-92)
# Specific_Function:
Not Available
# Riley_Gene_Function:
conserved hypothetical protein
# Riley_Cell_Function:
>>>
Not Available
# Gene_Ontology:
>>>
Function: Not Available
||
>>>
Process: Not Available
||
>>>
Component: Not Available
# Location:
Cytoplasm
# Blattner_Number:
b1233
# Gene_Sequence:
GTGTCTCAGCTTTGTCCCTGTGGTAGTGCTGTCGAGTATAGCCTATGTTGCCACCCTTATGTGTCTGGTG
AAAAGGTTGCACCTGATCCAGAACATCTCATGCGTTCGCGTTACTGCGCTTTTGTGATGCAAGACGCAGA
TTATTTAATAAAGACCTGGCATCCCTCTTGTGGAGCAGCGGCGTTACGTGCCGAATTGATGGCCGGATTT
GCGCATACTGAATGGTTGGGATTGACCGTATTTGAACATTGTTGGCAGGACGCCGACAATATCGGATTTG
TCAGTTTTGTTGCTCGATTTACCGAAGGTGGTAAAACAGGTGCAATAATTGAACGTTCGCGATTTTTGAA
AGAAAACGGTCAATGGTACTATATTGACGGTACACGTCCGCAGTTTGGTCGCAACGATCCCTGCCCTTGT
GGTTCAGGTAAAAAATTTAAAAAGTGCTGCGGCCAATAA
# Upstream_100_bases:
ATTCCCCTGGAATGCAATCGTAGCCACATCGCTACTGCTCGGTTAACATAGTGCTACTCAGGCGGTTAAT
ACGCCGTTATTGTTTCCAGGGAGATTATTT
# Blattner_No_Ontology:
Hypothetical, unclassified, unknown
# Gene_Position:
1287897-1288355 (Counter Clockwise)
# Centisome_Position:
27.768
# Gene_Name:
ychJ
# GC_Content:
46.41%
# Metabolic_Importance:
Unknown
# Preceding_Gene:
purU
# Following_Gene:
ychK
# Operon_Status:
No
# Operon_Components:
None
# Paralogues:
None
# Copy Number:
Unknown
# RNA_Copy_No.:
Log phase (2max): 0.06
Stationary phase (2max): 0.09
Ref: Nature Biotech., 18, 1262-68, Dec. 2000 (PMID=11101804)
# Genbank_ID_(DNA):
G1787484
# Genbank_ID_(Protein):
AAC74315.1
# SWISS_PROT_(AC_&_ID):
$ YCHJ_ECOLI (P37052)
# 2D_Gel_Image:
Not Available
# Other_Databases:
- ECOCYC: EG12119
- EcoGene: EG12119
- EMBL: L20251
- InterPro: IPR004027
- Pfam: PF02810
- PIR: D64870
# Pfam_Domain/Function:
PF02810 SEC-C motif;
# Homologues:
Not Available
# Similarity:
Belongs to the UPF0225 family.
# EC_Number:
Not Available
# No._of_Amino_Acids:
152 (Translated Protein)
151 (Mature Protein)
# Molecular_Weight:
16990 16859
# Theoretical_pI:
7.29
# Theoretical_pI (Mature):
7.29
# Sequence:
// MSQLCPCGSAVEYSLCCHPYVSGEKVAPDPEHLMRSRYCAFVMQDADYLIKTWHPSCGAA
// ALRAELMAGFAHTEWLGLTVFEHCWQDADNIGFVSFVARFTEGGKTGAIIERSRFLKENG
// QWYYIDGTRPQFGRNDPCPCGSGKKFKKCCGQ
// /\
// SQLCPCGSAVEYSLCCHPYVSGEKVAPDPEHLMRSRYCAFVMQDADYLIKTWHPSCGAAA
// LRAELMAGFAHTEWLGLTVFEHCWQDADNIGFVSFVARFTEGGKTGAIIERSRFLKENGQ
// WYYIDGTRPQFGRNDPCPCGSGKKFKKCCGQ
# PROSITE_Motif:
Not Available
# Important_Sites:
Not Available
# Transmembrane:
Not Available
# Cys/Met_Content:
7.2 %Cys (Translated Protein)
2.6 %Met (Translated Protein)
9.9 %Cys+Met (Translated Protein)
7.3 %Cys (Mature Protein)
2.0 %Met (Mature Protein)
9.3 %Cys+Met (Mature Protein)
# Secondary_Structure:
>YCHJ_ECOLI (Translated Protein)
MSQLCPCGSAVEYSLCCHPYVSGEKVAPDPEHLMRSRYCAFVMQDADYLIKTWHPSCGAA
CCCCCCCCCCCCHHHCCCCHHCCCCCCCCHHHHHHHHHHHHHHCCCCHHEECCCCCCCCC
ALRAELMAGFAHTEWLGLTVFEHCWQDADNIGFVSFVARFTEGGKTGAIIERSRFLKENG
HHHHHHHHHHHHCCCCCHHHHHHHHCCCCCEEEEEEEEEECCCCCEEEEEECCEEEEECC
QWYYIDGTRPQFGRNDPCPCGSGKKFKKCCGQ
EEEECCCCCCCCCCCCCCCCCCCHHHHHHCCC
/\
>YCHJ_ECOLI (Mature Protein)
SQLCPCGSAVEYSLCCHPYVSGEKVAPDPEHLMRSRYCAFVMQDADYLIKTWHPSCGAAA
CCCCCCCCCCCHHHCCCCHHCCCCCCCCHHHHHHHHHHHHHHCCCCHHEECCCCCCCCCH
LRAELMAGFAHTEWLGLTVFEHCWQDADNIGFVSFVARFTEGGKTGAIIERSRFLKENGQ
HHHHHHHHHHHCCCCCHHHHHHHHCCCCCEEEEEEEEEECCCCCEEEEEECCEEEEECCE
WYYIDGTRPQFGRNDPCPCGSGKKFKKCCGQ
EEECCCCCCCCCCCCCCCCCCCHHHHHHCCC
# PDB_Accession:
& Not Available
# Resolution:
Not Available
# Structure_CLASS:
Alpha Beta
# Quaternary_Structure:
Not Available
# Interacting_Partners:
Not Available
# Cofactors:
Not Available
# Metals_Ions:
Not Available
# Kcat_Value_[1/min]:
Not Available
# Specific_Activity_[micromol/min/mg]:
Not Available
# Km_Value_[mM]:
Not Available
# Substrates:
Not Available
# Products:
Not Available
# Specific_Reaction:
Not Available
# General_Reaction:
Not Available
# Inhibitor:
Not Available
# Priority:
9.4
# Status:
Selected, Cloned, Expressed, Purified
# Availability:
Montreal-Kingston Bacterial Structural Genomics Initiative
#END_ECARDFILE
#BEGIN_ECARDFILE
# Entry_ID:
CC3527A.1
# Accession_No.:
UA0003527
# Name:
Hypothetical outer membrane usher protein yqiG precursor
# Alternate_Names:
Not Available
# General_Function:
Cell envelope
# COG_Function:
Cell motility (code N)
# COG_ID:
COG3188 P pilus assembly protein, porin PapC (Evalue = 0.0)
# Specific_Function:
Involved in the export and assembly of a fimbrial subunit across the outer membrane (By similarity).
# Riley_Gene_Function:
putative outer membrane usher protein; predicted outer membrane usher protein
# Riley_Cell_Function:
>>>
Cell structure
Membrane
||
>>>
Location of gene products
Outer membrane
# Gene_Ontology:
>>>
Function: transporter activity
||
>>>
Process: physiological process
Process: cellular physiological process
Process: transport
||
>>>
Process: localization
Process: establishment of localization
Process: transport
||
>>>
Process: cellular process
Process: cellular physiological process
Process: transport
||
>>>
Component: cell
Component: membrane
# Location:
Outer Membrane
# Blattner_Number:
b3046
# Gene_Sequence:
ATGTCTGGAAATATAGGGGCAAATCCAGTTATCATCATTGGTTGTGCGTCAGCTTATGCCGTTGAATTCA
ACAAAGATTTAATCGAAGCCGAAGATCGTGAAAACGTTAACCTTTCCCAATTTGAAACTGATGGCCAATT
ACCCGTCGGCAAATATTCACTAAGCACTCTGATTAATAATAAGAGGACGCCAATCCACCTTGACCTCCAA
TGGGTATTAATTGATAACCAAACTGCAGTTTGCGTGACACCAGAGCAATTAACATTATTAGGATTTACTG
ATGAATTTATTGAAAAAACTCAGCAAAACCTGATCGATGGTTGTTACCCTATCGAAAAAGAAAAACAAAT
TACAACTTATCTCGATAAAGGGAAAATGCAATTATCCATATCTGCACCTCAGGCATGGTTAAAATACAAA
GATGCAAACTGGACGCCTCCTGAACTTTGGAATCATGGTATTGCTGGGGCATTTCTTGACTACAATTTAT
ATGCCTCTCATTATGCACCACATCAGGGCGATAATTCGCAAAATATAAGTTCCTATGGGCAGGCTGGGGT
TAATCTTGGGGCCTGGCGCCTGCGTACTGATTACCAGTACGATCAGTCATTTAACAATGGCAAAAGCCAG
GCGACCAACCTGGATTTTCCGCGTATTTATTTGTTTCGCCCAATCCCAGCAATGAATGCAAAACTAACTA
TAGGTCAATACGATACTGAATCCTCTATTTTCGACTCTTTCCATTTTTCTGGCATTTCGTTGAAAAGCGA
TGAGAATATGTTACCGCCAGACCTACGTGGTTACGCACCGCAAATCACGGGTGTCGCACAAACGAATGCA
AAGGTCACTGTCTCACAGAACAACCGTATTATTTATCAAGAAAATGTTCCTCCAGGCCCATTTGCTATTA
CCAATTTATTCAATACATTACAGGGGCAACTTGACGTCAAGGTTGAAGAAGAGGACGGACGCGTTACGCA
ATGGCAAGTTGCATCTAATAGTATTCCTTATCTGACGCGTAAAGGGCAGATTCGCTACACCACTGCTATG
GGTAAACCGACCAGCGTTGGTGGTGATTCCTTACAACAACCCTTCTTCTGGACTGGTGAATTCTCATGGG
GTTGGCTGAACAATGTATCCCTGTATGGTGGTTCAGTTTTAACAAACCGTGATTATCAATCTCTGGCTGC
CGGCGTTGGTTTTAATCTTAACTCATTAGGTTCATTATCTTTTGATGTCACACGATCTGATGCTCAGTTG
CATAATCAGGATAAAGAAACGGGTTATAGCTACCGCGCTAACTATTCAAAACGTTTTGAATCTACCGGTA
GCCAGCTCACTTTCGCTGGTTACCGTTTCTCTGATAAAAACTTTGTGACAATGAATGAATATATCAATGA
CACTAACCATTACACGAATTATCAGAATGAAAAAGAGAGTTATATTGTCACGTTTAACCAGTATCTTGAA
TCATTAAGGTTAAATACATACGTAAGTTTGGCTCGTAATACTTACTGGGACGCCAGCAGTAATGTGAATT
ATTCATTATCACTTAGCCGCGATTTTGATATCGGGCCATTAAAAAACGTCTCCACTTCTCTAACATTTAG
CCGAATAAACTGGGAAGAAGACAACCAGGATCAACTGTACCTAAATATTTCGATTCCCTGGGGAACTAGT
AGAACATTGAGCTATGGTATGCAACGAAATCAGGATAATGAGATTTCGCATACTGCTTCGTGGTATGACT
CTTCCGATCGAAATAATTCCTGGAGCGTTTCTGCTTCAGGCGACAATGATGAATTCAAAGATATGAAAGC
GTCACTACGCGCCAGTTATCAGCATAATACCGAGAACGGTCGACTCTACCTCTCCGGTACATCACAGCGA
GACAGTTATTATTCTCTGAATGCCAGTTGGAATGGTTCATTCACTGCGACTCGCCACGGTGCCGCTTTCC
ACGACTATAGCGGTAGTGCTGACTCGCGTTTTATGATCGACGCAGACGGCACTGAAGATATTCCGTTGAA
CAATAAACGCGCGGTAACTAATCGGTATGGCATCGGAGTTATTCCATCAGTCAGCAGTTACATAACAACA
TCATTAAGTGTTGATACCCGAAATCTGCCAGAAAATGTGGATATCGAAAACTCGGTTATCACCACCACCT
TAACCGAGGGTGCTATTGGCTACGCCAAACTTGATACCCGCAAGGGCTACCAAATCATAGGGGTTATTCG
CCTGGCAGATGGTAGTCATCCACCACTGGGGATTAGCGTAAAAGATGAAACCAGCCACAAAGAATTAGGA
CTGGTTGCTGATGGCGGCTTTGTATACCTCAACGGCATTCAGGATGATAACAAACTTGCTTTACGCTGGG
GTGACAAATCTTGTTTTATTCAACCACCCAATAGCAGCAACTTAACCACCGGAACGGCTATTTTACCGTG
TATTAGCCAAAATTAA
# Upstream_100_bases:
TCGAGCATTATAACGAATGGCATCCGCATAGTGCGCTGGGTTATCGCTCGCCACGGGAATATCTGCGGCA
GCGGGCTTGTAATGGGTTAAGTGATAACAG
# Blattner_No_Ontology:
Cell structure
# Gene_Position:
3185422-3187887 (Clockwise)
# Centisome_Position:
68.656
# Gene_Name:
yqiG
# GC_Content:
42.21%
# Metabolic_Importance:
Unknown
# Preceding_Gene:
ygiL
# Following_Gene:
yqiH
# Operon_Status:
Yes
# Operon_Components:
yqiG_yqiH_yqiI Ref: RegulonDB http://kinich.cifn.unam.mx:8850/db/regulondb_cgi.query_simple?v_organism=ECK12&v_table=3&v_name=yqiG
# Paralogues:
b0718 (ybgQ) 39; b2337/b2338 (yfcU) 35; b4317 (fimD) 28; b3144 (yraJ) 29; b0139 (htrE) 28; b0940 (ycbS) 27; b0532 (sfmD) 26; b2109 (yehB) 27; b3216 (yhcD) 25;
# Copy Number:
Unknown
# RNA_Copy_No.:
Log phase (2max): 379.88
Stationary phase (2max): 0.21
Ref: Nature Biotech., 18, 1262-68, Dec. 2000 (PMID=11101804)
# Genbank_ID_(DNA):
G2367188
# Genbank_ID_(Protein):
AAC76082.1
# SWISS_PROT_(AC_&_ID):
$ YQIG_ECOLI (P76655)
# 2D_Gel_Image:
Not Available
# Other_Databases:
- ECOCYC: EG14228
- EcoGene: EG14228
- EMBL: U00096
- InterPro: IPR000015
- Pfam: PF00577
- PIR: D65092
- PROSITE: PS01151
# Pfam_Domain/Function:
PF00577 Fimbrial Usher protein
# Homologues:
Not Available
# Similarity:
Belongs to the fimbrial export usher family.
# EC_Number:
Not Available
# No._of_Amino_Acids:
821 (Translated Protein)
801 (Mature Protein)
# Molecular_Weight:
91793 89889
# Theoretical_pI:
4.87
# Theoretical_pI (Mature):
4.87
# Sequence:
// MSGNIGANPVIIIGCASAYAVEFNKDLIEAEDRENVNLSQFETDGQLPVGKYSLSTLINN
// KRTPIHLDLQWVLIDNQTAVCVTPEQLTLLGFTDEFIEKTQQNLIDGCYPIEKEKQITTY
// LDKGKMQLSISAPQAWLKYKDANWTPPELWNHGIAGAFLDYNLYASHYAPHQGDNSQNIS
// SYGQAGVNLGAWRLRTDYQYDQSFNNGKSQATNLDFPRIYLFRPIPAMNAKLTIGQYDTE
// SSIFDSFHFSGISLKSDENMLPPDLRGYAPQITGVAQTNAKVTVSQNNRIIYQENVPPGP
// FAITNLFNTLQGQLDVKVEEEDGRVTQWQVASNSIPYLTRKGQIRYTTAMGKPTSVGGDS
// LQQPFFWTGEFSWGWLNNVSLYGGSVLTNRDYQSLAAGVGFNLNSLGSLSFDVTRSDAQL
// HNQDKETGYSYRANYSKRFESTGSQLTFAGYRFSDKNFVTMNEYINDTNHYTNYQNEKES
// YIVTFNQYLESLRLNTYVSLARNTYWDASSNVNYSLSLSRDFDIGPLKNVSTSLTFSRIN
// WEEDNQDQLYLNISIPWGTSRTLSYGMQRNQDNEISHTASWYDSSDRNNSWSVSASGDND
// EFKDMKASLRASYQHNTENGRLYLSGTSQRDSYYSLNASWNGSFTATRHGAAFHDYSGSA
// DSRFMIDADGTEDIPLNNKRAVTNRYGIGVIPSVSSYITTSLSVDTRNLPENVDIENSVI
// TTTLTEGAIGYAKLDTRKGYQIIGVIRLADGSHPPLGISVKDETSHKELGLVADGGFVYL
// NGIQDDNKLALRWGDKSCFIQPPNSSNLTTGTAILPCISQN
// /\
// VEFNKDLIEAEDRENVNLSQFETDGQLPVGKYSLSTLINNKRTPIHLDLQWVLIDNQTAV
// CVTPEQLTLLGFTDEFIEKTQQNLIDGCYPIEKEKQITTYLDKGKMQLSISAPQAWLKYK
// DANWTPPELWNHGIAGAFLDYNLYASHYAPHQGDNSQNISSYGQAGVNLGAWRLRTDYQY
// DQSFNNGKSQATNLDFPRIYLFRPIPAMNAKLTIGQYDTESSIFDSFHFSGISLKSDENM
// LPPDLRGYAPQITGVAQTNAKVTVSQNNRIIYQENVPPGPFAITNLFNTLQGQLDVKVEE
// EDGRVTQWQVASNSIPYLTRKGQIRYTTAMGKPTSVGGDSLQQPFFWTGEFSWGWLNNVS
// LYGGSVLTNRDYQSLAAGVGFNLNSLGSLSFDVTRSDAQLHNQDKETGYSYRANYSKRFE
// STGSQLTFAGYRFSDKNFVTMNEYINDTNHYTNYQNEKESYIVTFNQYLESLRLNTYVSL
// ARNTYWDASSNVNYSLSLSRDFDIGPLKNVSTSLTFSRINWEEDNQDQLYLNISIPWGTS
// RTLSYGMQRNQDNEISHTASWYDSSDRNNSWSVSASGDNDEFKDMKASLRASYQHNTENG
// RLYLSGTSQRDSYYSLNASWNGSFTATRHGAAFHDYSGSADSRFMIDADGTEDIPLNNKR
// AVTNRYGIGVIPSVSSYITTSLSVDTRNLPENVDIENSVITTTLTEGAIGYAKLDTRKGY
// QIIGVIRLADGSHPPLGISVKDETSHKELGLVADGGFVYLNGIQDDNKLALRWGDKSCFI
// QPPNSSNLTTGTAILPCISQN
# PROSITE_Motif:
FIMBRIAL_USHER; PATTERN. PS01151; Fimbrial biogenesis outer membrane usher protein signature. [VL]-[PASQ]-[PAS]-G-[PAD]-[FY]-x-[LI]-[DNQSTAP]-[DNH]-[LIVMFY]. PDOC00886; //
# Important_Sites:
Signal Chain 1 ?
# Transmembrane:
Transmembrane 2 21
# Cys/Met_Content:
0.6 %Cys (Translated Protein)
1.1 %Met (Translated Protein)
1.7 %Cys+Met (Translated Protein)
0.5 %Cys (Mature Protein)
1.0 %Met (Mature Protein)
1.5 %Cys+Met (Mature Protein)
# Secondary_Structure:
>YQIG_ECOLI (Translated Protein)
MSGNIGANPVIIIGCASAYAVEFNKDLIEAEDRENVNLSQFETDGQLPVGKYSLSTLINN
CCHHHHHHHHHHHCCCCHHHHCCCHHHHCCCCCCCCCHHHCCCCCCCCCEEEEEEEEECC
KRTPIHLDLQWVLIDNQTAVCVTPEQLTLLGFTDEFIEKTQQNLIDGCYPIEKEKQITTY
EEECCCEEEEEECCCCCCCCCCCHHHHHHHCCCHHHHCCCHHCCCCCCCCHHHCCCCEEE
FDKGKMQLSIFAPQAWLKYKDANWTPPELWNHGIAGAFLDYNLYASHYAPHQGDNSQNIS
ECCCCCEEEEECCHHHHCCCCCCCCCHHHHCCCCCEEEEEEEEEEEEECCCCCCCCCEEE
SYGQAGVNLGAWRLRTDYQYDQSFNNGKSQATNLDFPRIYLFRPIPAMNAKLTIGQYDTE
EEEEEEEEECCCEEEEEEEEEEECCCCCCCCCCCEEEEEEEEECCCCCCCEEEEEEEECC
SSIFDSFHFSGISLKSDENMLPPDLRGYAPQITGVAQTNAKVTVSQNNRIIYQENVPPGP
CEECCCCCEEEEEEEECCCCCCCCCEECCEEEEEEECCCCEEEEEECCEEEEEEECCCCC
FAITNLFNTLQGQLDVKVEEEDGRVTQWQVASNSIPYLTRKGQIRYTTAMGKPTSVGGDS
CCCCCCCCCCCEEEEEEEEECCCCEEEEEEEEEHHHHHHCCCCCEEEEEECCEECCCCCC
LQQPFFWTGEFSWGWLNNVSLYGGSVLTNRDYQSLAAGVGFNLNSLGSLSFDVTRSDAQL
CCCCEEEEEEECCCCCCCCHHHHHHHHHCCCHHHHHHHHHHCCCCCCCEEEEEEEEEEEE
HNQDKETGYSYRANYSKRFESTGSQLTFAGYRFSDKNFVTMNEYINDTNHYTNYQNEKES
CCCCCCCCCEEEEEEEEEECCCCCEEEEEEEEEEECCCCCHHHHCCCCCCCCCCCCCCEE
YIVTFNQYLESLRLNTYVSLARNTYWDASSNVNYSLSLSRDFDIGPLKNVSTSLTFSRIN
EEEEEEEECCCCCCCEEEEEEEEEEECCCCCEEEEEEEEEEECCEEEEEEEEEEEEEECC
WEEDNQDQLYLNISIPWGTSRTLSYGMQRNQDNEISHTASWYDSSDRNNSWSVSASGDND
CCCCCCCEEEEEEEEECCCCCCEEEEEEECCCCEEEEEEEEECCCCCEEEEEEEEEEECC
EFKDMKASLRASYQHNTENGRLYLSGTSQRDSYYSLNASWNGSFTATRHGAAFHDYSGSA
CCCCCEEEEEEEEEEECCCEEEEEEEEEECCCEEEEEEEEEEEEEEECCCEEECCCCCCC
DSRFMIDADGTEDIPLNNKRAVTNRYGIGVIPSVSSYITTSLSVDTRNLPENVDIENSVI
CCEEEEECCCCCCCEEECCCEEECCCCCEECCCCCCCEEEEEEEECCCCCCCEEECCCEE
TTTLTEGAIGYAKLDTRKGYQIIGVIRLADGSHPPLGISVKDETSHKELGLVADGGFVYL
EEEECCCCEEEEEEEEEECEEEEEEEECCCCCCCCCEEEEEECCCCEEEEEEECCCEEEE
NGIQDDNKLALRWGDKSCFIQPPNSSNLTTGTAILPCISQN
EECCCCCEEEEEECCCEEEECCCCCCCCCCCEEEEECCCCC
/\
>YQIG_ECOLI (Mature Protein)
MSGNIGANPVIIIGCASAYAVEFNKDLIEAEDRENVNLSQFETDGQLPVGKYSLSTLINN
CCHHHHHHHHHHHCCCCHHHHCCCHHHHCCCCCCCCCHHHCCCCCCCCCEEEEEEEEECC
KRTPIHLDLQWVLIDNQTAVCVTPEQLTLLGFTDEFIEKTQQNLIDGCYPIEKEKQITTY
EEECCCEEEEEECCCCCCCCCCCHHHHHHHCCCHHHHCCCHHCCCCCCCCHHHCCCCEEE
FDKGKMQLSIFAPQAWLKYKDANWTPPELWNHGIAGAFLDYNLYASHYAPHQGDNSQNIS
ECCCCCEEEEECCHHHHCCCCCCCCCHHHHCCCCCEEEEEEEEEEEEECCCCCCCCCEEE
SYGQAGVNLGAWRLRTDYQYDQSFNNGKSQATNLDFPRIYLFRPIPAMNAKLTIGQYDTE
EEEEEEEEECCCEEEEEEEEEEECCCCCCCCCCCEEEEEEEEECCCCCCCEEEEEEEECC
SSIFDSFHFSGISLKSDENMLPPDLRGYAPQITGVAQTNAKVTVSQNNRIIYQENVPPGP
CEECCCCCEEEEEEEECCCCCCCCCEECCEEEEEEECCCCEEEEEECCEEEEEEECCCCC
FAITNLFNTLQGQLDVKVEEEDGRVTQWQVASNSIPYLTRKGQIRYTTAMGKPTSVGGDS
CCCCCCCCCCCEEEEEEEEECCCCEEEEEEEEEHHHHHHCCCCCEEEEEECCEECCCCCC
LQQPFFWTGEFSWGWLNNVSLYGGSVLTNRDYQSLAAGVGFNLNSLGSLSFDVTRSDAQL
CCCCEEEEEEECCCCCCCCHHHHHHHHHCCCHHHHHHHHHHCCCCCCCEEEEEEEEEEEE
HNQDKETGYSYRANYSKRFESTGSQLTFAGYRFSDKNFVTMNEYINDTNHYTNYQNEKES
CCCCCCCCCEEEEEEEEEECCCCCEEEEEEEEEEECCCCCHHHHCCCCCCCCCCCCCCEE
YIVTFNQYLESLRLNTYVSLARNTYWDASSNVNYSLSLSRDFDIGPLKNVSTSLTFSRIN
EEEEEEEECCCCCCCEEEEEEEEEEECCCCCEEEEEEEEEEECCEEEEEEEEEEEEEECC
WEEDNQDQLYLNISIPWGTSRTLSYGMQRNQDNEISHTASWYDSSDRNNSWSVSASGDND
CCCCCCCEEEEEEEEECCCCCCEEEEEEECCCCEEEEEEEEECCCCCEEEEEEEEEEECC
EFKDMKASLRASYQHNTENGRLYLSGTSQRDSYYSLNASWNGSFTATRHGAAFHDYSGSA
CCCCCEEEEEEEEEEECCCEEEEEEEEEECCCEEEEEEEEEEEEEEECCCEEECCCCCCC
DSRFMIDADGTEDIPLNNKRAVTNRYGIGVIPSVSSYITTSLSVDTRNLPENVDIENSVI
CCEEEEECCCCCCCEEECCCEEECCCCCEECCCCCCCEEEEEEEECCCCCCCEEECCCEE
TTTLTEGAIGYAKLDTRKGYQIIGVIRLADGSHPPLGISVKDETSHKELGLVADGGFVYL
EEEECCCCEEEEEEEEEECEEEEEEEECCCCCCCCCEEEEEECCCCEEEEEEECCCEEEE
NGIQDDNKLALRWGDKSCFIQPPNSSNLTTGTAILPCISQN
EECCCCCEEEEEECCCEEEECCCCCCCCCCCEEEEECCCCC
# PDB_Accession:
& Not Available
# Resolution:
Not Available
# Structure_CLASS:
Mainly Beta
# Quaternary_Structure:
Not Available
# Interacting_Partners:
Not Available
# Cofactors:
Not Available
# Metals_Ions:
Not Available
# Kcat_Value_[1/min]:
Not Available
# Specific_Activity_[micromol/min/mg]:
Not Available
# Km_Value_[mM]:
Not Available
# Substrates:
Not Available
# Products:
Not Available
# Specific_Reaction:
Not Available
# General_Reaction:
Not Available
# Inhibitor:
Not Available
# Priority:
3.5
# Status:
Not Available
# Availability:
Not Available
#END_ECARDFILE
#BEGIN_ECARDFILE
# Entry_ID:
CC0163A.1
# Accession_No.:
UA0000163
# Name:
Penicillin-binding protein 1A
# Alternate_Names:
PBP-1a; PBP1a
# General_Function:
Cell envelope; beta-Lactamase/D-ala carboxypeptidase
# COG_Function:
Cell wall/membrane/envelope biogenesis (code M)
# COG_ID:
COG5009 Membrane carboxypeptidase/penicillin-binding protein (Evalue = 0.0)
# Specific_Function:
Cell wall formation. Synthesis of cross-linked peptidoglycan from the lipid intermediates. The enzyme has a penicillin-insensitive transglycosylase N-terminal domain (formation of linear glycan strands) and a penicillin-sensitive transpeptidase C-terminal domain (cross-linking of the peptide subunits).
# Riley_Gene_Function:
fused penicillin-binding protein 1a: murein transglycosylase (N-terminal); murein transpeptidase (C-terminal)
# Riley_Cell_Function:
>>>
Metabolism
Macromolecules (cellular constituent) biosynthesis
Peptidoglycan (murein)c
||
>>>
Cell processes
Cell division
||
>>>
Cell processes
Protection
Drug resistance/sensitivity
||
>>>
Cell structure
Peptidoglycan (murein)
||
>>>
Location of gene products
Inner membrane
# Gene_Ontology:
>>>
Function: catalytic activity
||
>>>
Function: catalytic activity
Function: hydrolase activity
Function: peptidase activity
||
>>>
Function: binding
Function: drug binding
Function: penicillin binding
||
>>>
Process: physiological process
Process: metabolism
Process: biosynthesis
Process: cellular biosynthesis
Process: macromolecule biosynthesis
Process: carbohydrate biosynthesis
Process: peptidoglycan biosynthesis
||
>>>
Process: cell wall biosynthesis
Process: cell wall biosynthesis (sensu Bacteria)
Process: peptidoglycan biosynthesis
||
>>>
Process: macromolecule metabolism
Process: carbohydrate metabolism
Process: cellular carbohydrate metabolism
Process: peptidoglycan metabolism
Process: peptidoglycan biosynthesis
||
>>>
Process: carbohydrate biosynthesis
Process: peptidoglycan biosynthesis
||
>>>
Process: macromolecule biosynthesis
Process: carbohydrate biosynthesis
Process: peptidoglycan biosynthesis
||
>>>
Process: cellular metabolism
Process: cellular biosynthesis
Process: macromolecule biosynthesis
Process: carbohydrate biosynthesis
Process: peptidoglycan biosynthesis
||
>>>
Process: cell wall biosynthesis
Process: cell wall biosynthesis (sensu Bacteria)
Process: peptidoglycan biosynthesis
||
>>>
Process: primary metabolism
Process: carbohydrate metabolism
Process: cellular carbohydrate metabolism
Process: peptidoglycan metabolism
Process: peptidoglycan biosynthesis
||
>>>
Process: carbohydrate biosynthesis
Process: peptidoglycan biosynthesis
||
>>>
Process: cellular physiological process
Process: cell organization and biogenesis
Process: external encapsulating structure organization and biogenesis
Process: cell wall organization and biogenesis
Process: cell wall organization and biogenesis (sensu Bacteria)
Process: cell wall biosynthesis (sensu Bacteria)
Process: peptidoglycan biosynthesis
||
>>>
Process: cell wall biosynthesis
Process: cell wall biosynthesis (sensu Bacteria)
Process: peptidoglycan biosynthesis
||
>>>
Process: cellular metabolism
Process: cellular biosynthesis
Process: macromolecule biosynthesis
Process: carbohydrate biosynthesis
Process: peptidoglycan biosynthesis
||
>>>
Process: cell wall biosynthesis
Process: cell wall biosynthesis (sensu Bacteria)
Process: peptidoglycan biosynthesis
||
>>>
Process: cellular process
Process: cellular physiological process
Process: cell organization and biogenesis
Process: external encapsulating structure organization and biogenesis
Process: cell wall organization and biogenesis
Process: cell wall organization and biogenesis (sensu Bacteria)
Process: cell wall biosynthesis (sensu Bacteria)
Process: peptidoglycan biosynthesis
||
>>>
Process: cell wall biosynthesis
Process: cell wall biosynthesis (sensu Bacteria)
Process: peptidoglycan biosynthesis
||
>>>
Process: cellular metabolism
Process: cellular biosynthesis
Process: macromolecule biosynthesis
Process: carbohydrate biosynthesis
Process: peptidoglycan biosynthesis
||
>>>
Process: cell wall biosynthesis
Process: cell wall biosynthesis (sensu Bacteria)
Process: peptidoglycan biosynthesis
Process: physiological process
Process: metabolism
Process: biosynthesis
Process: cellular biosynthesis
Process: macromolecule biosynthesis
Process: carbohydrate biosynthesis
Process: peptidoglycan biosynthesis
||
>>>
Process: cell wall biosynthesis
Process: cell wall biosynthesis (sensu Bacteria)
Process: peptidoglycan biosynthesis
||
>>>
Process: macromolecule metabolism
Process: carbohydrate metabolism
Process: cellular carbohydrate metabolism
Process: peptidoglycan metabolism
Process: peptidoglycan biosynthesis
||
>>>
Process: carbohydrate biosynthesis
Process: peptidoglycan biosynthesis
||
>>>
Process: macromolecule biosynthesis
Process: carbohydrate biosynthesis
Process: peptidoglycan biosynthesis
||
>>>
Process: cellular metabolism
Process: cellular biosynthesis
Process: macromolecule biosynthesis
Process: carbohydrate biosynthesis
Process: peptidoglycan biosynthesis
||
>>>
Process: cell wall biosynthesis
Process: cell wall biosynthesis (sensu Bacteria)
Process: peptidoglycan biosynthesis
||
>>>
Process: primary metabolism
Process: carbohydrate metabolism
Process: cellular carbohydrate metabolism
Process: peptidoglycan metabolism
Process: peptidoglycan biosynthesis
||
>>>
Process: carbohydrate biosynthesis
Process: peptidoglycan biosynthesis
||
>>>
Process: cellular physiological process
Process: cell organization and biogenesis
Process: external encapsulating structure organization and biogenesis
Process: cell wall organization and biogenesis
Process: cell wall organization and biogenesis (sensu Bacteria)
Process: cell wall biosynthesis (sensu Bacteria)
Process: peptidoglycan biosynthesis
||
>>>
Process: cell wall biosynthesis
Process: cell wall biosynthesis (sensu Bacteria)
Process: peptidoglycan biosynthesis
||
>>>
Process: cellular metabolism
Process: cellular biosynthesis
Process: macromolecule biosynthesis
Process: carbohydrate biosynthesis
Process: peptidoglycan biosynthesis
||
>>>
Process: cell wall biosynthesis
Process: cell wall biosynthesis (sensu Bacteria)
Process: peptidoglycan biosynthesis
||
>>>
Process: cellular process
Process: cellular physiological process
Process: cell organization and biogenesis
Process: external encapsulating structure organization and biogenesis
Process: cell wall organization and biogenesis
Process: cell wall organization and biogenesis (sensu Bacteria)
Process: cell wall biosynthesis (sensu Bacteria)
Process: peptidoglycan biosynthesis
||
>>>
Process: cell wall biosynthesis
Process: cell wall biosynthesis (sensu Bacteria)
Process: peptidoglycan biosynthesis
||
>>>
Process: cellular metabolism
Process: cellular biosynthesis
Process: macromolecule biosynthesis
Process: carbohydrate biosynthesis
Process: peptidoglycan biosynthesis
||
>>>
Process: cell wall biosynthesis
Process: cell wall biosynthesis (sensu Bacteria)
Process: peptidoglycan biosynthesis
Process: physiological process
Process: metabolism
Process: biosynthesis
Process: cellular biosynthesis
Process: cell wall biosynthesis
Process: cell wall biosynthesis (sensu Bacteria)
||
>>>
Process: cellular metabolism
Process: cellular biosynthesis
Process: cell wall biosynthesis
Process: cell wall biosynthesis (sensu Bacteria)
||
>>>
Process: cellular physiological process
Process: cell organization and biogenesis
Process: external encapsulating structure organization and biogenesis
Process: cell wall organization and biogenesis
Process: cell wall organization and biogenesis (sensu Bacteria)
Process: cell wall biosynthesis (sensu Bacteria)
||
>>>
Process: cell wall biosynthesis
Process: cell wall biosynthesis (sensu Bacteria)
||
>>>
Process: cellular metabolism
Process: cellular biosynthesis
Process: cell wall biosynthesis
Process: cell wall biosynthesis (sensu Bacteria)
||
>>>
Process: cellular process
Process: cellular physiological process
Process: cell organization and biogenesis
Process: external encapsulating structure organization and biogenesis
Process: cell wall organization and biogenesis
Process: cell wall organization and biogenesis (sensu Bacteria)
Process: cell wall biosynthesis (sensu Bacteria)
||
>>>
Process: cell wall biosynthesis
Process: cell wall biosynthesis (sensu Bacteria)
||
>>>
Process: cellular metabolism
Process: cellular biosynthesis
Process: cell wall biosynthesis
Process: cell wall biosynthesis (sensu Bacteria)
||
>>>
Component: cell
Component: external encapsulating structure
Component: cell wall
Component: cell wall (sensu Bacteria)
# Location:
Type II Membrane Protein. Inner Membrane
# Blattner_Number:
b3396
# Gene_Sequence:
GTGAAGTTCGTAAAGTATTTTTTGATCCTTGCAGTCTGTTGCATTCTGCTGGGAGCAGGCTCGATTTATG
GCCTATACCGCTACATCGAGCCACAACTGCCGGATGTGGCGACATTAAAAGATGTTCGCCTGCAAATTCC
GATGCAGATTTACAGCGCCGATGGCGAGCTGATTGCTCAATACGGTGAGAAACGTCGTATTCCGGTTACG
TTGGATCAAATCCCACCGGAGATGGTGAAAGCCTTTATCGCGACAGAAGACAGCCGCTTCTACGAGCATC
ACGGCGTTGACCCGGTGGGGATCTTCCGTGCAGCAAGCGTGGCGCTGTTCTCCGGTCACGCGTCACAAGG
GGCAAGTACCATTACCCAGCAGCTGGCGAGAAACTTCTTCCTCAGTCCAGAACGCACGCTGATGCGTAAG
ATTAAGGAAGTCTTCCTCGCGATTCGCATTGAACAGCTGCTGACGAAAGACGAGATCCTCGAGCTTTATC
TGAACAAGATTTACCTTGGTTACCGCGCCTATGGTGTCGGTGCTGCGGCACAAGTCTATTTCGGAAAAAC
GGTCGACCAACTGACGCTGAACGAAATGGCGGTGATAGCCGGGCTGCCGAAAGCGCCTTCCACCTTCAAC
CCGCTCTACTCGATGGATCGTGCCGTCGCGCGGCGTAACGTCGTGCTGTCGCGGATGCTGGATGAAGGGT
ATATCACCCAACAACAGTTCGATCAGACACGCACTGAGGCGATTAACGCTAACTATCACGCGCCGGAGAT
TGCTTTCTCTGCGCCGTACCTGAGCGAAATGGTGCGCCAGGAGATGTATAACCGTTATGGCGAAAGTGCC
TATGAAGACGGTTATCGCATTTACACCACCATCACCCGCAAAGTGCAGCAGGCCGCGCAGCAGGCGGTAC
GTAATAACGTGCTGGACTACGACATGCGCCACGGCTATCGCGGCCCGGCAAATGTGCTGTGGAAAGTGGG
CGAGTCGGCGTGGGATAACAACAAGATTACCGATACGCTGAAGGCGCTGCCAACCTATGGTCCGCTGCTG
CCTGCCGCAGTCACCAGCGCCAATCCTCAGCAAGCGACGGCGATGCTGGCGGACGGGTCGACCGTCGCAT
TGAGTATGGAAGGCGTTCGCTGGGCGCGTCCTTACCGTTCGGATACTCAGCAAGGACCGACGCCGCGTAA
AGTGACCGATGTTCTGCAAACGGGTCAGCAAATCTGGGTTCGTCAGGTTGGCGATGCATGGTGGCTGGCA
CAAGTGCCGGAAGTGAACTCGGCGCTGGTGTCGATCAATCCGCAAAACGGTGCCGTTATGGCGCTGGTCG
GTGGCTTTGATTTCAATCAGAGCAAGTTTAACCGCGCCACCCAGGCACTGCGTCAGGTGGGTTCCAACAT
CAAACCGTTCCTCTACACCGCGGCGATGGATAAAGGTCTGACGCTGGCAAGTATGTTGAACGATGTGCCA
ATTTCTCGCTGGGATGCAAGTGCCGGTTCTGACTGGCAGCCGAAGAACTCACCACCGCAGTATGCTGGTC
CAATTCGCTTACGTCAGGGGCTGGGTCAGTCGAAAAACGTGGTGATGGTACGCGCAATGCGGGCGATGGG
CGTCGACTACGCTGCAGAATATCTGCAACGCTTCGGCTTCCCGGCACAAAACATTGTCCACACCGAATCG
CTGGCGCTGGGTTCAGCGTCCTTCACCCCAATGCAGGTGGCGCGCGGCTACGCGGTCATGGCGAACGGCG
GCTTCCTGGTGGACCCGTGGTTTATCAGCAAAATTGAAAACGATCAGGGCGGCGTGATTTTCGAAGCGAA
ACCGAAAGTAGCCTGCCCGGAATGCGATATTCCGGTGATTTACGGTGATACGCAGAAATCGAACGTGCTG
GAAAATAACGATGTTGAAGATGTCGCTATCTCCCGCGAGCAGCAGAATGTTTCTGTACCAATGCCGCAGC
TGGAGCAGGCAAATCAGGCGTTAGTGGCGAAGACTGGCGCGCAGGAGTACGCACCGCACGTCATCAACAC
TCCGCTGGCATTCCTGATTAAGAGTGCTTTGAACACCAATATCTTTGGTGAGCCAGGCTGGCAGGGTACT
GGCTGGCGTGCAGGTCGTGATTTGCAGCGTCGCGATATCGGCGGGAAAACCGGGACCACTAACAGTTCGA
AAGATGCGTGGTTCTCGGGTTACGGTCCGGGCGTTGTGACCTCGGTCTGGATTGGCTTTGATGATCACCG
TCGTAATCTCGGTCATACAACGGCTTCCGGAGCGATTAAAGATCAGATCTCAGGTTACGAAGGCGGTGCC
AAGAGTGCCCAGCCTGCATGGGACGCTTATATGAAAGCCGTTCTTGAAGGTGTGCCGGAGCAGCCGCTGA
CGCCGCCACCGGGTATTGTGACGGTGAATATCGATCGCAGCACCGGGCAGTTAGCTAATGGTGGCAACAG
CCGCGAAGAGTATTTCATCGAAGGTACGCAGCCGACACAACAGGCAGTGCACGAGGTGGGAACGACCATT
ATCGATAATGGCGAGGCACAGGAATTGTTCTGA
# Upstream_100_bases:
CCCGTCACTCTGACGGGTATATCAATGCGTCTGGCTTGCCTTTATACTACCGCGCGTTTGTTTATAAACT
GCCCAAATGAAACTAAATGGGAAATTTCCA
# Blattner_No_Ontology:
Cell structure
# Gene_Position:
3520893-3523445 (Clockwise)
# Centisome_Position:
75.887
# Gene_Name:
mrcA or ponA
# GC_Content:
55.54%
# Metabolic_Importance:
Non_Essential
# Preceding_Gene:
yrfD
# Following_Gene:
nudE
# Operon_Status:
No
# Operon_Components:
None
# Paralogues:
None
# Copy Number:
Unknown
# RNA_Copy_No.:
Log phase (2max): 0.68
Stationary phase (2max): 0.25
Ref: Nature Biotech., 18, 1262-68, Dec. 2000 (PMID=11101804)
# Genbank_ID_(DNA):
G1789799
# Genbank_ID_(Protein):
AAC76421.1
# SWISS_PROT_(AC_&_ID):
$ PBPA_ECOLI (P02918)
# 2D_Gel_Image:
Not Available
# Other_Databases:
- ECOCYC: EG10748
- EcoGene: EG10748
- EMBL: X02164
- InterPro: IPR001264; IPR011816; IPR001460; IPR012338
- Pfam: PF00912; PF00905
- PIR: G65134
# Pfam_Domain/Function:
PF00912 Transglycosylase; PF00905 Penicillin binding protein transpeptidase domain;
# Homologues:
Not Available
# Similarity:
In the N-terminal section; belongs to the glycosyltransferase 51 family. In the C-terminal section; belongs to the transpeptidase family.
# EC_Number:
2.4.2.-; 3.4.-.-
# No._of_Amino_Acids:
850 (Translated Protein)
826 (Mature Protein)
# Molecular_Weight:
93637 91032
# Theoretical_pI:
6.53
# Theoretical_pI (Mature):
6.23
# Sequence:
// MKFVKYFLILAVCCILLGAGSIYGLYRYIEPQLPDVATLKDVRLQIPMQIYSADGELIAQ
// YGEKRRIPVTLDQIPPEMVKAFIATEDSRFYEHHGVDPVGIFRAASVALFSGHASQGAST
// ITQQLARNFFLSPERTLMRKIKEVFLAIRIEQLLTKDEILELYLNKIYLGYRAYGVGAAA
// QVYFGKTVDQLTLNEMAVIAGLPKAPSTFNPLYSMDRAVARRNVVLSRMLDEGYITQQQF
// DQTRTEAINANYHAPEIAFSAPYLSEMVRQEMYNRYGESAYEDGYRIYTTITRKVQQAAQ
// QAVRNNVLDYDMRHGYRGPANVLWKVGESAWDNNKITDTLKALPTYGPLLPAAVTSANPQ
// QATAMLADGSTVALSMEGVRWARPYRSDTQQGPTPRKVTDVLQTGQQIWVRQVGDAWWLA
// QVPEVNSALVSINPQNGAVMALVGGFDFNQSKFNRATQALRQVGSNIKPFLYTAAMDKGL
// TLASMLNDVPISRWDASAGSDWQPKNSPPQYAGPIRLRQGLGQSKNVVMVRAMRAMGVDY
// AAEYLQRFGFPAQNIVHTESLALGSASFTPMQVARGYAVMANGGFLVDPWFISKIENDQG
// GVIFEAKPKVACPECDIPVIYGDTQKSNVLENNDVEDVAISREQQNVSVPMPQLEQANQA
// LVAKTGAQEYAPHVINTPLAFLIKSALNTNIFGEPGWQGTGWRAGRDLQRRDIGGKTGTT
// NSSKDAWFSGYGPGVVTSVWIGFDDHRRNLGHTTASGAIKDQISGYEGGAKSAQPAWDAY
// MKAVLEGVPEQPLTPPPGIVTVNIDRSTGQLANGGNSREEYFIEGTQPTQQAVHEVGTTI
// IDNGEAQELF
// /\
// LYRYIEPQLPDVATLKDVRLQIPMQIYSADGELIAQYGEKRRIPVTLDQIPPEMVKAFIA
// TEDSRFYEHHGVDPVGIFRAASVALFSGHASQGASTITQQLARNFFLSPERTLMRKIKEV
// FLAIRIEQLLTKDEILELYLNKIYLGYRAYGVGAAAQVYFGKTVDQLTLNEMAVIAGLPK
// APSTFNPLYSMDRAVARRNVVLSRMLDEGYITQQQFDQTRTEAINANYHAPEIAFSAPYL
// SEMVRQEMYNRYGESAYEDGYRIYTTITRKVQQAAQQAVRNNVLDYDMRHGYRGPANVLW
// KVGESAWDNNKITDTLKALPTYGPLLPAAVTSANPQQATAMLADGSTVALSMEGVRWARP
// YRSDTQQGPTPRKVTDVLQTGQQIWVRQVGDAWWLAQVPEVNSALVSINPQNGAVMALVG
// GFDFNQSKFNRATQALRQVGSNIKPFLYTAAMDKGLTLASMLNDVPISRWDASAGSDWQP
// KNSPPQYAGPIRLRQGLGQSKNVVMVRAMRAMGVDYAAEYLQRFGFPAQNIVHTESLALG
// SASFTPMQVARGYAVMANGGFLVDPWFISKIENDQGGVIFEAKPKVACPECDIPVIYGDT
// QKSNVLENNDVEDVAISREQQNVSVPMPQLEQANQALVAKTGAQEYAPHVINTPLAFLIK
// SALNTNIFGEPGWQGTGWRAGRDLQRRDIGGKTGTTNSSKDAWFSGYGPGVVTSVWIGFD
// DHRRNLGHTTASGAIKDQISGYEGGAKSAQPAWDAYMKAVLEGVPEQPLTPPPGIVTVNI
// DRSTGQLANGGNSREEYFIEGTQPTQQAVHEVGTTIIDNGEAQELF
# PROSITE_Motif:
Not Available
# Important_Sites:
Active_Site 465 465 ACYLATED By PENICILLIN
# Transmembrane:
Transmembrane 6 26 Signal-anchor for type II membrane
# Cys/Met_Content:
0.5 %Cys (Translated Protein)
2.6 %Met (Translated Protein)
3.1 %Cys+Met (Translated Protein)
0.2 %Cys (Mature Protein)
2.5 %Met (Mature Protein)
2.8 %Cys+Met (Mature Protein)
# Secondary_Structure:
>PBPA_ECOLI (Translated Protein)
MKFVKYFLILAVCCILLGAGSIYGLYRYIEPQLPDVATLKDVRLQIPMQIYSADGELIAQ
CHCCCHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCEEEECCCCCEEEE
QYGEKRRIPVTLDQIPPEMVKAFIATEDSRFYEHHGVDPVGIFRAASVALFSGHASQGAS
ECCCCCCEEECHHHCCHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHCCCCCCCCH
STITQQLARNFFLSPERTLMRKIKEVFLAIRIEQLLTKDEILELYLNKIYLGYRAYGVGA
HHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHCCCCCHHHHH
AAAQVYFGKTVDQLTLNEMAVIAGLPKAPSTFNPLYSMDRAVARRNVVLSRMLDEGYITQ
HHHHHHHCCCHHHCCHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHHHHHHCCCCCH
QQQFDQTRTEAINANYHAPEIAFSAPYLSEMVRQEMYNRYGESAYEDGYRIYTTITRKVQ
HHHHHHHHHCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHCCHHHHCCCEEEECCCHHHH
QQAAQQAVRNNVLDYDMRHGYRGPANVLWKVGESAWDNNKITDTLKALPTYGPLLPAAVT
HHHHHHHHHHHCCCHHHHCCCCCCCCCCCCCCCCCCCCCCCHHHCCCCCCCCCCCCEEEC
TSANPQQATAMLADGSTVALSMEGVRWARPYRSDTQQGPTPRKVTDVLQTGQQIWVRQVG
CCCCCCCCCEEEECCCEEEECCCCCCCCCCCCCCCCCCCCCCCEECCCCHHHHHHHHHHH
GDAWWLAQVPEVNSALVSINPQNGAVMALVGGFDFNQSKFNRATQALRQVGSNIKPFLYT
HHHHHHCCCCCCEEEEEEEECCCCEEEEEECCCCCCCCCCCCCCCCCCCCCCHHHHHHHH
TAAMDKGLTLASMLNDVPISRWDASAGSDWQPKNSPPQYAGPIRLRQGLGQSKNVVMVRA
HHHHHCCCCCCCEEEECCEEECCCCCCCCCEEEECCCCCCCCCCHHHHHHHCCCHHHHHH
AMRAMGVDYAAEYLQRFGFPAQNIVHTESLALGSASFTPMQVARGYAVMANGGFLVDPWF
HHHHCCHHHHHHHHHHCCCCCCCCCCCHHHHCCCCCCCHHHHHHHHHHHHCCCEEECCEE
FISKIENDQGGVIFEAKPKVACPECDIPVIYGDTQKSNVLENNDVEDVAISREQQNVSVP
EEEEEECCCCCEEEECCCCCCCCCHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCEEEECC
PMPQLEQANQALVAKTGAQEYAPHVINTPLAFLIKSALNTNIFGEPGWQGTGWRAGRDLQ
CCCCEEECCCCCCCCCCCCCHHHHHCCHHHHHHHHHHCCCCCCCCCCCCCCCEECCCCCC
QRRDIGGKTGTTNSSKDAWFSGYGPGVVTSVWIGFDDHRRNLGHTTASGAIKDQISGYEG
CCCEECCCCCCCCCCCCEEEEEECCCEEEEEEEEECCCCCCCCCCEEECCCCCCCCCCCC
GGAKSAQPAWDAYMKAVLEGVPEQPLTPPPGIVTVNIDRSTGQLANGGNSREEYFIEGTQ
CCCCCCHHHHHHHHHHHHCCCCCCCCCCCCCCEEEEECHHHCCCCCCCCCCEEEEECCCC
QPTQQAVHEVGTTIIDNGEAQELF
CCCCCCHHHCCCEECCCCCCCCCC
/\
>PBPA_ECOLI (Mature Protein)
KFVKYFLILAVCCILLGAGSIYGLYRYIEPQLPDVATLKDVRLQIPMQIYSADGELIAQY
HCCCHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCEEEECCCCCEEEEC
YGEKRRIPVTLDQIPPEMVKAFIATEDSRFYEHHGVDPVGIFRAASVALFSGHASQGAST
CCCCCCEEECHHHCCHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHCCCCCCCCHH
TITQQLARNFFLSPERTLMRKIKEVFLAIRIEQLLTKDEILELYLNKIYLGYRAYGVGAA
HHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHCCCCCHHHHHH
AAQVYFGKTVDQLTLNEMAVIAGLPKAPSTFNPLYSMDRAVARRNVVLSRMLDEGYITQQ
HHHHHHCCCHHHCCHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHHHHHHCCCCCHH
QQFDQTRTEAINANYHAPEIAFSAPYLSEMVRQEMYNRYGESAYEDGYRIYTTITRKVQQ
HHHHHHHHCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHCCHHHHCCCEEEECCCHHHHH
QAAQQAVRNNVLDYDMRHGYRGPANVLWKVGESAWDNNKITDTLKALPTYGPLLPAAVTS
HHHHHHHHHHCCCHHHHCCCCCCCCCCCCCCCCCCCCCCCHHHCCCCCCCCCCCCEEECC
SANPQQATAMLADGSTVALSMEGVRWARPYRSDTQQGPTPRKVTDVLQTGQQIWVRQVGD
CCCCCCCCEEEECCCEEEECCCCCCCCCCCCCCCCCCCCCCCEECCCCHHHHHHHHHHHH
DAWWLAQVPEVNSALVSINPQNGAVMALVGGFDFNQSKFNRATQALRQVGSNIKPFLYTA
HHHHHCCCCCCEEEEEEEECCCCEEEEEECCCCCCCCCCCCCCCCCCCCCCHHHHHHHHH
AAMDKGLTLASMLNDVPISRWDASAGSDWQPKNSPPQYAGPIRLRQGLGQSKNVVMVRAM
HHHHCCCCCCCEEEECCEEECCCCCCCCCEEEECCCCCCCCCCHHHHHHHCCCHHHHHHH
MRAMGVDYAAEYLQRFGFPAQNIVHTESLALGSASFTPMQVARGYAVMANGGFLVDPWFI
HHHCCHHHHHHHHHHCCCCCCCCCCCHHHHCCCCCCCHHHHHHHHHHHHCCCEEECCEEE
ISKIENDQGGVIFEAKPKVACPECDIPVIYGDTQKSNVLENNDVEDVAISREQQNVSVPM
EEEEECCCCCEEEECCCCCCCCCHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCEEEECCC
MPQLEQANQALVAKTGAQEYAPHVINTPLAFLIKSALNTNIFGEPGWQGTGWRAGRDLQR
CCCEEECCCCCCCCCCCCCHHHHHCCHHHHHHHHHHCCCCCCCCCCCCCCCEECCCCCCC
RRDIGGKTGTTNSSKDAWFSGYGPGVVTSVWIGFDDHRRNLGHTTASGAIKDQISGYEGG
CCEECCCCCCCCCCCCEEEEEECCCEEEEEEEEECCCCCCCCCCEEECCCCCCCCCCCCC
GAKSAQPAWDAYMKAVLEGVPEQPLTPPPGIVTVNIDRSTGQLANGGNSREEYFIEGTQP
CCCCCHHHHHHHHHHHHCCCCCCCCCCCCCCEEEEECHHHCCCCCCCCCCEEEEECCCCC
PTQQAVHEVGTTIIDNGEAQELF
CCCCCHHHCCCEECCCCCCCCCC
# PDB_Accession:
& Not Available
# Resolution:
Not Available
# Structure_CLASS:
Alpha Beta
# Quaternary_Structure:
Not Available
# Interacting_Partners:
1) mrdA,
# Cofactors:
Not Available
# Metals_Ions:
Not Available
# Kcat_Value_[1/min]:
Not Available
# Specific_Activity_[micromol/min/mg]:
Not Available
# Km_Value_[mM]:
Not Available
# Substrates:
Not Available
# Products:
Not Available
# Specific_Reaction:
Not Available
# General_Reaction:
Transferases; Acyltransferases; Aminoacyltransferases
# Inhibitor:
Not Available
# Priority:
3.1
# Status:
Selected, Cloned, Expressed
# Availability:
Montreal-Kingston Bacterial Structural Genomics Initiative
#END_ECARDFILE
#BEGIN_ECARDFILE
# Entry_ID:
CC1518A.1
# Accession_No.:
UA0001518
# Name:
Small heat shock protein ibpA
# Alternate_Names:
16 kDa heat shock protein A
# General_Function:
Cellular processes; HSP20-like chaperones
# COG_Function:
Posttranslational modification, protein turnover, chaperones (code O)
# COG_ID:
COG0071 Molecular chaperone (small heat shock protein) (Evalue = 1e-74)
# Specific_Function:
Associates with aggregated proteins, together with ibpB, to stabilize and protect them from irreversible denaturation and extensive proteolysis during heat shock and oxidative stress. Aggregated proteins bound to the ibpAB complex are more efficiently refolded and reactivated by the ATP-dependent chaperone systems clpB and dnaK/dnaJ/grpE. Its activity is ATP- independent.
# Riley_Gene_Function:
small heat shock protein
# Riley_Cell_Function:
>>>
Cell processes
Adaptation to stress
Temperature extremes
||
>>>
Cell processes
Adaptation to stress
Other stresses (mechanical, nutritional, oxidative)
# Gene_Ontology:
>>>
Function: Not Available
||
>>>
Process: Not Available
||
>>>
Component: Not Available
# Location:
Cytoplasm
# Blattner_Number:
b3687
# Gene_Sequence:
ATGCGTAACTTTGATTTATCCCCGCTTTACCGTTCTGCTATTGGATTTGACCGTTTGTTTAACCACTTAG
AAAACAACCAGAGCCAGAGTAATGGCGGCTACCCTCCGTATAACGTTGAACTGGTAGACGAAAACCATTA
CCGCATTGCTATCGCTGTGGCTGGTTTTGCTGAGAGCGAACTGGAAATTACCGCCCAGGATAATCTGCTG
GTGGTGAAAGGTGCTCACGCCGACGAACAAAAAGAGCGCACCTATCTGTACCAGGGCATCGCTGAACGCA
ACTTTGAACGCAAATTCCAGTTAGCTGAGAACATTCATGTTCGTGGTGCTAACCTGGTAAATGGTTTGCT
GTATATCGATCTCGAACGCGTGATTCCGGAAGCGAAAAAACCGCGCCGTATCGAAATCAACTAA
# Upstream_100_bases:
CATCGTAGCCGATGAGGACGCGCCTGATGGGTGTTCTGGCTACCTGACCTGTCCATTGTGGAAGGTCTTA
CATTCTCGCTGATTTCAGGAGCTATTGATT
# Blattner_No_Ontology:
Cell processes incl. adaptation, protection
# Gene_Position:
3865032-3865445 (Counter Clockwise)
# Centisome_Position:
83.313
# Gene_Name:
ibpA or hslT or htpN
# GC_Content:
47.10%
# Metabolic_Importance:
Non_Essential
# Preceding_Gene:
ibpB
# Following_Gene:
yidQ
# Operon_Status:
No
# Operon_Components:
None
# Paralogues:
b3686 (ibpB) 50;
# Copy Number:
Unknown
# RNA_Copy_No.:
Log phase (2max): 0.1
Stationary phase (2max): 0.37
Ref: Nature Biotech., 18, 1262-68, Dec. 2000 (PMID=11101804)
# Genbank_ID_(DNA):
G1790122
# Genbank_ID_(Protein):
AAC76710.1
# SWISS_PROT_(AC_&_ID):
$ IBPA_ECOLI (P0C054)
# 2D_Gel_Image:
http://ca.expasy.org/cgi-bin/ch2d-compute-map?ECOLI,P29209
# Other_Databases:
- 2DPAGE: P0C054
- ECO2DBASE: G013.5
- ECOCYC: EG11534
- EcoGene: EG11534
- EMBL: M94104
- InterPro: IPR002068; IPR008978
- Pfam: PF00011
- PIR: A45245
- PROSITE: PS01031
# Pfam_Domain/Function:
PF00011 Hsp20/alpha crystallin family
# Homologues:
Not Available
# Similarity:
Belongs to the small heat shock protein (HSP20) family.
# EC_Number:
Not Available
# No._of_Amino_Acids:
137 (Translated Protein)
137 (Mature Protein)
# Molecular_Weight:
15774 15774
# Theoretical_pI:
5.65
# Theoretical_pI (Mature):
5.65
# Sequence:
// MRNFDLSPLYRSAIGFDRLFNHLENNQSQSNGGYPPYNVELVDENHYRIAIAVAGFAESE
// LEITAQDNLLVVKGAHADEQKERTYLYQGIAERNFERKFQLAENIHVRGANLVNGLLYID
// LERVIPEAKKPRRIEIN
// /\
// MRNFDLSPLYRSAIGFDRLFNHLENNQSQSNGGYPPYNVELVDENHYRIAIAVAGFAESE
// LEITAQDNLLVVKGAHADEQKERTYLYQGIAERNFERKFQLAENIHVRGANLVNGLLYID
// LERVIPEAKKPRRIEIN
# PROSITE_Motif:
Not Available
# Important_Sites:
Not Available
# Transmembrane:
Not Available
# Cys/Met_Content:
0.0 %Cys (Translated Protein)
0.7 %Met (Translated Protein)
0.7 %Cys+Met (Translated Protein)
0.0 %Cys (Mature Protein)
0.7 %Met (Mature Protein)
0.7 %Cys+Met (Mature Protein)
# Secondary_Structure_(PDB):
GGAGHVPEYFVGIGTPISFYG
CEEEEEEECCCCCCCCCEEEC
# PDB_Accession:
& 1PP5
# Resolution:
Not Available
# Structure_CLASS:
Mainly Beta
# Quaternary_Structure:
Not Available
# Interacting_Partners:
Unknown
# Cofactors:
Not Available
# Metals_Ions:
Not Available
# Kcat_Value_[1/min]:
Not Available
# Specific_Activity_[micromol/min/mg]:
Not Available
# Km_Value_[mM]:
Not Available
# Substrates:
Not Available
# Products:
Not Available
# Specific_Reaction:
Not Available
# General_Reaction:
Not Available
# Inhibitor:
Not Available
# Priority:
0
# Status:
Selected, Cloned, Expressed
# Availability:
Montreal-Kingston Bacterial Structural Genomics Initiative
#END_ECARDFILE
#BEGIN_ECARDFILE
# Entry_ID:
CC2325A.1
# Accession_No.:
UA0002325
# Name:
Sulfite reductase [NADPH] flavoprotein alpha-component
# Alternate_Names:
SIR-FP
# General_Function:
Energy metabolism; Flavoproteins; Ferredoxin reductase-like, C-terminal NADP-linked domain; Riboflavin synthase domain-like
# COG_Function:
Inorganic ion transport and metabolism (code P)
# COG_ID:
COG0369 Sulfite reductase, alpha subunit (flavoprotein) (Evalue = 0.0)
# Specific_Function:
Catalyzes the 6-electron reduction of sulfite to sulfide. This is one of several activities required for the biosynthesis of L-cysteine from sulfate. The flavo-protein component catalyzes the electron flow from NADPH -> FAD -> FMN to the hemoprotein component.
# Riley_Gene_Function:
sulfite reductase, alpha subunit (flavoprotein)
# Riley_Cell_Function:
>>>
Metabolism
Metabolism of other compounds
Sulfur metabolism
# Gene_Ontology:
>>>
Function: catalytic activity
Function: oxidoreductase activity
||
>>>
Function: binding
Function: ion binding
Function: cation binding
Function: transition metal ion binding
Function: iron ion binding
||
>>>
Function: metal ion binding
Function: transition metal ion binding
Function: iron ion binding
||
>>>
Function: binding
Function: nucleotide binding
Function: FMN binding
||
>>>
Function: cofactor binding
Function: coenzyme binding
Function: FMN binding
||
>>>
Function: catalytic activity
Function: oxidoreductase activity
||
>>>
Function: catalytic activity
Function: oxidoreductase activity
||
>>>
Process: physiological process
Process: metabolism
Process: cellular metabolism
Process: generation of precursor metabolites and energy
Process: electron transport
||
>>>
Process: cellular physiological process
Process: transport
Process: electron transport
||
>>>
Process: cellular metabolism
Process: generation of precursor metabolites and energy
Process: electron transport
||
>>>
Process: localization
Process: establishment of localization
Process: transport
Process: electron transport
||
>>>
Process: cellular process
Process: cellular physiological process
Process: transport
Process: electron transport
||
>>>
Process: cellular metabolism
Process: generation of precursor metabolites and energy
Process: electron transport
Process: physiological process
Process: metabolism
Process: cellular metabolism
Process: generation of precursor metabolites and energy
Process: electron transport
||
>>>
Process: cellular physiological process
Process: transport
Process: electron transport
||
>>>
Process: cellular metabolism
Process: generation of precursor metabolites and energy
Process: electron transport
||
>>>
Process: localization
Process: establishment of localization
Process: transport
Process: electron transport
||
>>>
Process: cellular process
Process: cellular physiological process
Process: transport
Process: electron transport
||
>>>
Process: cellular metabolism
Process: generation of precursor metabolites and energy
Process: electron transport
Process: physiological process
Process: metabolism
Process: cellular metabolism
Process: generation of precursor metabolites and energy
Process: electron transport
||
>>>
Process: cellular physiological process
Process: transport
Process: electron transport
||
>>>
Process: cellular metabolism
Process: generation of precursor metabolites and energy
Process: electron transport
||
>>>
Process: localization
Process: establishment of localization
Process: transport
Process: electron transport
||
>>>
Process: cellular process
Process: cellular physiological process
Process: transport
Process: electron transport
||
>>>
Process: cellular metabolism
Process: generation of precursor metabolites and energy
Process: electron transport
Process: physiological process
Process: metabolism
Process: cellular metabolism
Process: generation of precursor metabolites and energy
Process: electron transport
||
>>>
Process: cellular physiological process
Process: transport
Process: electron transport
||
>>>
Process: cellular metabolism
Process: generation of precursor metabolites and energy
Process: electron transport
||
>>>
Process: localization
Process: establishment of localization
Process: transport
Process: electron transport
||
>>>
Process: cellular process
Process: cellular physiological process
Process: transport
Process: electron transport
||
>>>
Process: cellular metabolism
Process: generation of precursor metabolites and energy
Process: electron transport
||
>>>
Component: Not Available
# Location:
Cytoplasm
# Blattner_Number:
b2764
# Gene_Sequence:
ATGACGACACAGGTCCCACCTTCCGCGTTGCTTCCGTTGAACCCGGAGCAACTGGCACGCCTTCAGGCGG
CCACGACCGATTTAACTCCCACCCAGCTTGCCTGGGTTTCTGGCTATTTCTGGGGCGTACTCAATCAGCA
GCCTGCTGCGCTTGCAGCGACGCCAGCGCCAGCCGCAGAAATGCCGGGTATAACTATTATCTCCGCCTCG
CAAACCGGCAATGCGCGCCGGGTTGCTGAAGCATTACGTGATGATTTATTAGCAGCAAAACTGAACGTTA
AGCTGGTGAACGCGGGCGACTATAAATTCAAACAAATCGCCAGCGAAAAACTGCTCATCGTAGTGACGTC
AACGCAAGGGGAAGGGGAACCGCCGGAAGAAGCCGTCGCGCTGCATAAGTTCCTGTTCTCCAAAAAAGCG
CCAAAGCTGGAAAACACCGCGTTTGCCGTGTTTAGCCTCGGCGATAGCTCTTATGAATTTTTCTGCCAGT
CCGGGAAAGATTTCGACAGCAAGCTGGCGGAACTGGGTGGTGAACGCCTGCTCGACCGTGTCGATGCCGA
TGTTGAATACCAGGCTGCTGCCAGCGAGTGGCGCGCCCGCGTGGTTGATGCGCTTAAATCGCGTGCGCCT
GTCGCGGCACCTTCGCAATCCGTCGCTACTGGCGCGGTAAATGAAATCCACACCAGCCCGTACAGCAAAG
ACGCGCCGCTGGTGGCTAGCCTCTCTGTTAACCAGAAAATTACCGGGCGTAACTCTGAAAAAGACGTTCG
CCATATCGAAATTGACTTAGGTGACTCGGGCATGCGTTACCAGCCGGGTGACGCGCTGGGCGTCTGGTAT
CAGAACGATCCGGCACTGGTGAAAGAACTTGTCGAACTGCTGTGGCTGAAAGGCGATGAACCTGTCACCG
TCGAGGGCAAAACGTTGCCTCTGAACGAAGCGCTACAGTGGCACTTCGAACTGACCGTCAACACCGCCAA
CATTGTTGAGAATTACGCCACGCTTACCCGCAGTGAAACACTGCTGCCGCTGGTGGGCGATAAAGCGAAG
TTACAGCATTACGCCGCGACGACGCCGATTGTTGACATGGTGCGTTTCTCCCCGGCACAGCTTGATGCCG
AAGCGCTAATTAATCTGCTGCGCCCGCTGACGCCGCGTCTGTATTCCATCGCCTCCTCGCAGGCGGAAGT
CGAGAACGAAGTACACGTCACCGTTGGTGTGGTGCGTTACGACGTGGAAGGCCGCGCCCGTGCCGGTGGT
GCCTCCAGCTTCCTCGCTGACCGCGTGGAAGAAGAGGGCGAAGTCCGCGTATTTATCGAACATAACGATA
ACTTCCGCCTGCCAGCCAATCCAGAAACCCCGGTGATTATGATTGGCCCAGGCACCGGTATTGCGCCGTT
CCGCGCCTTTATGCAGCAACGCGCCGCCGACGAAGCGCCAGGTAAAAACTGGCTGTTCTTTGGTAATCCG
CACTTTACGGAAGACTTCCTGTACCAGGTGGAGTGGCAGCGCTACGTCAAAGATGGCGTGCTGACACGTA
TCGATCTTGCCTGGTCGCGCGATCAAAAAGAAAAAGTTTACGTACAAGACAAACTGCGCGAACAGGGCGC
GGAGCTGTGGCGCTGGATCAATGATGGTGCCCACATTTATGTCTGCGGCGACGCTAATCGCATGGCGAAA
GACGTTGAGCAGGCACTTCTGGAAGTGATTGCCGAATTTGGTGGCATGGACACCGAAGCGGCGGATGAAT
TTTTAAGTGAGCTGCGCGTAGAGCGCCGTTATCAGCGAGATGTCTACTAA
# Upstream_100_bases:
TTAATCCACACCGTTTGCCCCGTTAACCTTACCTTCTCTTCTGTTTTATGGGCGCTGACAGGGCGCAGAA
ACAGCTTTGCTTACTGGAACATAACGACGC
# Blattner_No_Ontology:
Central intermediary metabolism
# Gene_Position:
2888121-2889920 (Counter Clockwise)
# Centisome_Position:
62.287
# Gene_Name:
cysJ
# GC_Content:
56.06%
# Metabolic_Importance:
Non_Essential
# Preceding_Gene:
cysI
# Following_Gene:
ygcM
# Operon_Status:
Yes
# Operon_Components:
cysH_cysI_cysJ Ref: Center for Information Biology and DNA Data Bank of Japan, National Institute of Genetics http://www.cib.nig.ac.jp/dda/taitoh/ecoli.operon.html
# Paralogues:
None
# Copy Number:
Unknown
# RNA_Copy_No.:
Log phase (2max): 0.3
Stationary phase (2max): 0.26
Ref: Nature Biotech., 18, 1262-68, Dec. 2000 (PMID=11101804)
# Genbank_ID_(DNA):
G1789123
# Genbank_ID_(Protein):
AAC75806.1
# SWISS_PROT_(AC_&_ID):
$ CYSJ_ECOLI (P38038)
# 2D_Gel_Image:
Not Available
# Other_Databases:
- ECOCYC: EG10191
- EcoGene: EG10191
- EMBL: M23008
- InterPro: IPR010199; IPR003097; IPR001094; IPR008254; IPR001709; IPR001433
- Pfam: PF00667; PF00258; PF00175
- PIR: H65057
- PRINTS: PR00369
- PROSITE: PS50902
# Pfam_Domain/Function:
PF00667 FAD binding domain; PF00258 Flavodoxin; PF00175 Oxidoreductase NAD-binding domain;
# Homologues:
Organism=Homo sapiens, GI24307877, Length=680, Positives=45%, Blast Score=217
Organism=Homo sapiens, GI7657393, Length=597, Positives=46%, Blast Score=211
Organism=Homo sapiens, GI24041032, Length=1114, Positives=44%, Blast Score=189
Organism=Homo sapiens, GI24041029, Length=1153, Positives=44%, Blast Score=189
Organism=Homo sapiens, GI10835173, Length=1434, Positives=41%, Blast Score=179
Organism=Homo sapiens, GI40254422, Length=1203, Positives=41%, Blast Score=155
Organism=Homo sapiens, GI4505279, Length=698, Positives=41%, Blast Score=135
Organism=Homo sapiens, GI13325068, Length=725, Positives=41%, Blast Score=135
Organism=Caenorhabditis elegans, GI17554134, Length=662, Positives=43%, Blast Score=207
Organism=Caenorhabditis elegans, GI17566446, Length=585, Positives=39%, Blast Score=131
Organism=Caenorhabditis elegans, GI17531441, Length=682, Positives=42%, Blast Score=87.8
Organism=Saccharomyces cerevisiae, GI6321832, Length=691, Positives=43%, Blast Score=193
Organism=Saccharomyces cerevisiae, GI14318553, Length=1035, Positives=45%, Blast Score=138
Organism=Saccharomyces cerevisiae, GI6325305, Length=623, Positives=42%, Blast Score=112
Organism=Mus musculus, GI6679421, Length=678, Positives=46%, Blast Score=222
Organism=Mus musculus, GI6754872, Length=1144, Positives=43%, Blast Score=184
Organism=Mus musculus, GI6724321, Length=1429, Positives=40%, Blast Score=178
Organism=Mus musculus, GI31982150, Length=1202, Positives=41%, Blast Score=152
Organism=Mus musculus, GI27369650, Length=696, Positives=41%, Blast Score=130
Organism=Mus musculus, GI30142675, Length=466, Positives=42%, Blast Score=110
Organism=Drosophila melanogaster, GI17137192, Length=679, Positives=44%, Blast Score=191
Organism=Drosophila melanogaster, GI24582192, Length=550, Positives=45%, Blast Score=171
Organism=Drosophila melanogaster, GI24583543, Length=1349, Positives=44%, Blast Score=150
Organism=Drosophila melanogaster, GI24660907, Length=582, Positives=41%, Blast Score=139
Organism=Drosophila melanogaster, GI24660903, Length=582, Positives=41%, Blast Score=139
# Similarity:
Contains 1 flavodoxin-like domain.
# EC_Number:
1.8.1.2
# No._of_Amino_Acids:
599 (Translated Protein)
598 (Mature Protein)
# Molecular_Weight:
66270 66139
# Theoretical_pI:
4.66
# Theoretical_pI (Mature):
4.66
# Sequence:
// MTTQVPPSALLPLNPEQLARLQAATTDLTPTQLAWVSGYFWGVLNQQPAALAATPAPAAE
// MPGITIISASQTGNARRVAEALRDDLLAAKLNVKLVNAGDYKFKQIASEKLLIVVTSTQG
// EGEPPEEAVALHKFLFSKKAPKLENTAFAVFSLGDSSYEFFCQSGKDFDSKLAELGGERL
// LDRVDADVEYQAAASEWRARVVDALKSRAPVAAPSQSVATGAVNEIHTSPYSKDAPLVAS
// LSVNQKITGRNSEKDVRHIEIDLGDSGMRYQPGDALGVWYQNDPALVKELVELLWLKGDE
// PVTVEGKTLPLNEALQWHFELTVNTANIVENYATLTRSETLLPLVGDKAKLQHYAATTPI
// VDMVRFSPAQLDAEALINLLRPLTPRLYSIASSQAEVENEVHVTVGVVRYDVEGRARAGG
// ASSFLADRVEEEGEVRVFIEHNDNFRLPANPETPVIMIGPGTGIAPFRAFMQQRAADEAP
// GKNWLFFGNPHFTEDFLYQVEWQRYVKDGVLTRIDLAWSRDQKEKVYVQDKLREQGAELW
// RWINDGAHIYVCGDANRMAKDVEQALLEVIAEFGGMDTEAADEFLSELRVERRYQRDVY
// /\
// TTQVPPSALLPLNPEQLARLQAATTDLTPTQLAWVSGYFWGVLNQQPAALAATPAPAAEM
// PGITIISASQTGNARRVAEALRDDLLAAKLNVKLVNAGDYKFKQIASEKLLIVVTSTQGE
// GEPPEEAVALHKFLFSKKAPKLENTAFAVFSLGDSSYEFFCQSGKDFDSKLAELGGERLL
// DRVDADVEYQAAASEWRARVVDALKSRAPVAAPSQSVATGAVNEIHTSPYSKDAPLVASL
// SVNQKITGRNSEKDVRHIEIDLGDSGMRYQPGDALGVWYQNDPALVKELVELLWLKGDEP
// VTVEGKTLPLNEALQWHFELTVNTANIVENYATLTRSETLLPLVGDKAKLQHYAATTPIV
// DMVRFSPAQLDAEALINLLRPLTPRLYSIASSQAEVENEVHVTVGVVRYDVEGRARAGGA
// SSFLADRVEEEGEVRVFIEHNDNFRLPANPETPVIMIGPGTGIAPFRAFMQQRAADEAPG
// KNWLFFGNPHFTEDFLYQVEWQRYVKDGVLTRIDLAWSRDQKEKVYVQDKLREQGAELWR
// WINDGAHIYVCGDANRMAKDVEQALLEVIAEFGGMDTEAADEFLSELRVERRYQRDVY
# PROSITE_Motif:
Not Available
# Important_Sites:
Not Available
# Transmembrane:
Not Available
# Cys/Met_Content:
0.3 %Cys (Translated Protein)
1.3 %Met (Translated Protein)
1.7 %Cys+Met (Translated Protein)
0.3 %Cys (Mature Protein)
1.2 %Met (Mature Protein)
1.5 %Cys+Met (Mature Protein)
# Secondary_Structure_(PDB):
IHTSPYSKDAPLVASLSVNQKITGRNSEKDVRHIEIDLGDSGLRYQPGDAL
CCCCCCCCCCEEEEEEEEEEEECCCCCCEEEEEEEEEECCCCCCEEECEEE
GVWYQNDPALVKELVELLWLKGDEPVTVEGKTLPLNEALQWHFELTVNTAN
EEECEEEHHHHHHHHHHHCCCCCEEEECCCEEECHHHHHHHCCCCCCCCHH
IVENYATLTRSETLLPLVGDKAKLQHYAATTPIVDMVRFSPAQLDAEALIN
HHHHHHHHHCCCCHHHHCCCHHHHHHHHHCCCHHHHHHHCCCCCCHHHHHH
LLRPLTPRLYSIASSQAEVENEVHVTVGVVRYDVEGRARAGGASSFLADRV
HEEEECEEEEEECCCCCCCCEEEEEEEEEEEEECCCCEEEEHHHHHHHCCC
EEEGEVRVFIEHNDNFRLPANPETPVIMIGPGTGIAPFRAFMQQRAADEAP
CCCCEEEEEEEEECCCCCCCCCCEEEEEEEECCHHHHHHHHHHHHHHHCEE
GKNWLFFGNPHFTEDFLYQVEWQRYVKEGVLTRIDLAWSRDQKEKVYVQDK
EEEEEEEEEECCCCCCCCHHHHHHHHHHCCCEEEEEEECCCCCCEEEHHHH
LREQGAELWRWINDGAHIYVCGDANRMAKDVEQALLEVIAEFGGMDTEAAD
HHHHHHHHHHHHHHCEEEEEECCCCCHHHHHHHHHHHHHHHHCCCCHHHHH
EFLSELRVERRYQRDVY
HHHHHHHCCCEEEEEEE
# PDB_Accession:
& Model Based on 1DDI (225-598)
# Resolution:
Not Available
# Structure_CLASS:
Alpha Beta
# Quaternary_Structure:
heterododecameric A8B4 complex of cysJ (8x) and cysI (4x)
# Interacting_Partners:
1) cysJ, 2) cysI,
# Cofactors:
--flavin --heme
# Metals_Ions:
--iron-sulfur cluster
# Kcat_Value_[1/min]:
36300
# Specific_Activity_[micromol/min/mg]:
2.2.87
# Km_Value_[mM]:
4.5-10.5 {hydroxylamine}
0.8-1.5 {nitrite}
0.018 {NADPH}
0.012-0.014 {sulfite}
0.0043-0.0074 {sulfite}
# Substrates:
Hydrogen sulfide + 3 NADP+ + 3 H2O + NADPH + FMN
# Products:
hydrogen sulfite + 3 NADPH + 3 H+ + NADP + FMNH2
# Specific_Reaction:
Hydrogen sulfide + 3 NADP+ + 3 H2O = hydrogen sulfite + 3 NADPH + 3 H+
NADPH + FMN = NADP + FMNH2
# General_Reaction:
Redox reaction;
# Inhibitor:
--arsenite --Br- --Cl- --CN- --CO --F- --iodonium diphenyl chloride --NADP+ --NO3- --p-mercuriphenylsulfonate --SCN- --sulfate --sulfide
# Priority:
1.0
# Status:
Not Available
# Availability:
Not Available
#END_ECARDFILE
#BEGIN_ECARDFILE
# Entry_ID:
CC2210A.1
# Accession_No.:
UA0002210
# Name:
Alpha-ketoglutarate-dependent taurine dioxygenase
# Alternate_Names:
2- aminoethanesulfonate dioxygenase; Sulfate starvation-induced protein 3; SSI3
# General_Function:
Energy metabolism; Clavaminate synthase-like
# COG_Function:
Secondary metabolites biosynthesis, transport and catabolism (code Q)
# COG_ID:
COG2175 Probable taurine catabolism dioxygenase (Evalue = 1e-167)
# Specific_Function:
Catalyzes the conversion of taurine and alpha ketoglutarate to sulfite, aminoacetaldehyde and succinate. Required for the utilization of taurine (2-aminoethanesulfonic acid) as an alternative sulfur source. Pentane-sulfonic acid, 3- (N-morpholino)propanesulfonic acid and 1,3-dioxo-2- isoindolineethanesulfonic acid are also substrates for this enzyme.
# Riley_Gene_Function:
taurine dioxygenase, 2-oxoglutarate-dependent
# Riley_Cell_Function:
>>>
Metabolism
Carbon compound utilization
Amines
||
>>>
Metabolism
Metabolism of other compounds
Sulfur metabolism
# Gene_Ontology:
>>>
Function: catalytic activity
Function: oxidoreductase activity
||
>>>
Process: physiological process
Process: metabolism
Process: cellular metabolism
Process: generation of precursor metabolites and energy
Process: electron transport
||
>>>
Process: cellular physiological process
Process: transport
Process: electron transport
||
>>>
Process: cellular metabolism
Process: generation of precursor metabolites and energy
Process: electron transport
||
>>>
Process: localization
Process: establishment of localization
Process: transport
Process: electron transport
||
>>>
Process: cellular process
Process: cellular physiological process
Process: transport
Process: electron transport
||
>>>
Process: cellular metabolism
Process: generation of precursor metabolites and energy
Process: electron transport
||
>>>
Component: Not Available
# Location:
Cytoplasm
# Blattner_Number:
b0368
# Gene_Sequence:
ATGAGTGAACGTCTGAGCATTACCCCGCTGGGGCCGTATATCGGCGCACAAATTTCGGGTGCCGACCTGA
CGCGCCCGTTAAGCGATAATCAGTTTGAACAGCTTTACCATGCGGTGCTGCGCCATCAGGTGGTGTTTCT
ACGCGATCAAGCTATTACGCCGCAGCAGCAACGCGCGCTGGCCCAGCGTTTTGGCGAATTGCATATTCAC
CCTGTTTACCCGCATGCCGAAGGGGTTGACGAGATCATCGTGCTGGATACCCATAACGATAATCCGCCAG
ATAACGACAACTGGCATACCGATGTGACATTTATTGAAACGCCACCCGCAGGGGCGATTCTGGCAGCTAA
AGAGTTACCTTCGACCGGCGGTGATACGCTCTGGACCAGCGGTATTGCGGCCTATGAGGCGCTCTCTGTT
CCCTTCCGCCAGCTGCTGAGTGGGCTGCGTGCGGAGCATGATTTCCGTAAATCGTTCCCGGAATACAAAT
ACCGCAAAACCGAGGAGGAACATCAACGCTGGCGCGAGGCGGTCGCGAAAAACCCGCCGTTGCTACATCC
GGTGGTGCGAACGCATCCGGTGAGCGGTAAACAGGCGCTGTTTGTGAATGAAGGCTTTACTACGCGAATT
GTTGATGTGAGCGAGAAAGAGAGCGAAGCCTTGTTAAGTTTTTTGTTTGCCCATATCACCAAACCGGAGT
TTCAGGTGCGCTGGCGCTGGCAACCAAATGATATTGCGATTTGGGATAACCGCGTGACCCAGCACTATGC
CAATGCCGATTACCTGCCACAGCGACGGATAATGCATCGGGCGACGATCCTTGGGGATAAACCGTTTTAT
CGGGCGGGGTAA
# Upstream_100_bases:
TGCTGGCGGGGATCGCGGTGATTGCGATTATCGCCTTTCTTTTAGAACTGGGTCTGCGCGCGTTACAGCG
CCGCCTGACGCCCTGGCATGGAGAAGTACA
# Blattner_No_Ontology:
Hypothetical, unclassified, unknown
# Gene_Position:
387019-387870 (Clockwise)
# Centisome_Position:
8.342
# Gene_Name:
tauD or ssiD
# GC_Content:
54.46%
# Metabolic_Importance:
Non_Essential
# Preceding_Gene:
tauC
# Following_Gene:
hemB
# Operon_Status:
Yes
# Operon_Components:
tauA_tauB_tauC_tauD Ref: RegulonDB http://kinich.cifn.unam.mx:8850/db/regulondb_cgi.query_simple?v_organism=ECK12&v_table=3&v_name=tauD
# Paralogues:
None
# Copy Number:
Unknown
# RNA_Copy_No.:
Log phase (2max): 3.11
Stationary phase (2max): 0.17
Ref: Nature Biotech., 18, 1262-68, Dec. 2000 (PMID=11101804)
# Genbank_ID_(DNA):
G1786565
# Genbank_ID_(Protein):
AAC73471.1
# SWISS_PROT_(AC_&_ID):
$ TAUD_ECOLI (P37610)
# 2D_Gel_Image:
Not Available
# Other_Databases:
- ECOCYC: EG12423
- EcoGene: EG12423
- EMBL: D85613
- InterPro: IPR003819
- Pfam: PF02668
- PIR: S78607
# Pfam_Domain/Function:
PF02668 Taurine catabolism dioxygenase TauD, TfdA family;
# Homologues:
Organism=Saccharomyces cerevisiae, GI6322971, Length=412, Positives=47%, Blast Score=126
# Similarity:
Belongs to the tfdA dioxygenase family.
# EC_Number:
1.14.11.17
# No._of_Amino_Acids:
283 (Translated Protein)
282 (Mature Protein)
# Molecular_Weight:
32410 32279
# Theoretical_pI:
6.76
# Theoretical_pI (Mature):
6.76
# Sequence:
// MSERLSITPLGPYIGAQISGADLTRPLSDNQFEQLYHAVLRHQVVFLRDQAITPQQQRAL
// AQRFGELHIHPVYPHAEGVDEIIVLDTHNDNPPDNDNWHTDVTFIETPPAGAILAAKELP
// STGGDTLWTSGIAAYEALSVPFRQLLSGLRAEHDFRKSFPEYKYRKTEEEHQRWREAVAK
// NPPLLHPVVRTHPVSGKQALFVNEGFTTRIVDVSEKESEALLSFLFAHITKPEFQVRWRW
// QPNDIAIWDNRVTQHYANADYLPQRRIMHRATILGDKPFYRAG
// /\
// SERLSITPLGPYIGAQISGADLTRPLSDNQFEQLYHAVLRHQVVFLRDQAITPQQQRALA
// QRFGELHIHPVYPHAEGVDEIIVLDTHNDNPPDNDNWHTDVTFIETPPAGAILAAKELPS
// TGGDTLWTSGIAAYEALSVPFRQLLSGLRAEHDFRKSFPEYKYRKTEEEHQRWREAVAKN
// PPLLHPVVRTHPVSGKQALFVNEGFTTRIVDVSEKESEALLSFLFAHITKPEFQVRWRWQ
// PNDIAIWDNRVTQHYANADYLPQRRIMHRATILGDKPFYRAG
# PROSITE_Motif:
Not Available
# Important_Sites:
Not Available
# Transmembrane:
Not Available
# Cys/Met_Content:
0.0 %Cys (Translated Protein)
0.7 %Met (Translated Protein)
0.7 %Cys+Met (Translated Protein)
0.0 %Cys (Mature Protein)
0.4 %Met (Mature Protein)
0.4 %Cys+Met (Mature Protein)
# Secondary_Structure_(PDB):
RLSITPLGPYIGAQISGADLTRPLSDNQFEQLYHAVLRHQVVFLRDQAITP
CEEEEEECCCCCEEEECCCCCCCCCHHHHHHHHHHHHHCEEEEEECCCCCH
QQQRALAQRFGELHIHPVYPHAEGVDEIIVLDTHNDNPPDNDNWHTDVTFI
HHHHHHHHHHCEEECCCCEEEECCCCCEEEEEECCCCCCCCCEEEECCCCC
ETPPAGAILAAKELPSTGGDTLWTSGIAAYEALSVPFRQLLSGLRAEHDFR
CEEEEEEEEEEEECCCCCCEEEEEEEHHHHHHCCHHHHHHHCCEEEEEECC
KSFPEYKYRKTEEEHQRWREAVAKNPPLLHPVVRTHPVSGKQALFVNEGFT
CCCCCCCCCCCCCCHHHHHHHHCCCCEEEECEEEEECCCCEEEEECCCCCC
TRIVDVSEKESEALLSFLFAHITKPEFQVRWRWQPNDIAIWDNRVTQHYAN
CCCCCCCHHHHHHHHHHHHHHHHCCCCEEEEECCCCEEEEEEECEEEEEEE
ADYLPQRRIMHRATILGDKPFYRA
CCCCCCEEEEEEEEEEECCEEECC
# PDB_Accession:
& 1gy9
# Resolution:
2.50
# Structure_CLASS:
Alpha Beta
# Quaternary_Structure:
homodimer
# Interacting_Partners:
Not Available
# Cofactors:
Binds 1 iron(II) ion per subunit.
# Metals_Ions:
--Fe2+ --more
# Kcat_Value_[1/min]:
Not Available
# Specific_Activity_[micromol/min/mg]:
Not Available
# Km_Value_[mM]:
Not Available
# Substrates:
2-Oxoglutarate + O2 + Taurine
# Products:
Aminoacetaldehyde + CO2 + H+ + Sulfite + Succinate
# Specific_Reaction:
2-Oxoglutarate + O2 + Taurine --> Aminoacetaldehyde + CO2 + H+ + Sulfite + Succinate
# General_Reaction:
Not Available
# Inhibitor:
--Co2+ --Cu2+ --EDTA --Zn2+
# Priority:
0.0
# Status:
Selected, Cloned, Expressed, Soluble
# Availability:
SPINE-EU: Department of Biochemistry and Biophysics (DBB) Stockholm University
#END_ECARDFILE
#BEGIN_ECARDFILE
# Entry_ID:
CC0332A.1
# Accession_No.:
UA0000332
# Name:
DNA topoisomerase 1
# Alternate_Names:
DNA topoisomerase I; Omega- protein; Relaxing enzyme; Untwisting enzyme; Swivelase
# General_Function:
Replication; Prokaryotic type I DNA topoisomerase; Zinc beta-ribbon
# COG_Function:
Replication, recombination and repair (code L)
# COG_ID:
COG0550 Topoisomerase IA (Evalue = 0.0)
# Specific_Function:
The reaction catalyzed by topoisomerases leads to the conversion of one topological isomer of DNA to another.
# Riley_Gene_Function:
DNA topoisomerase type I, omega protein
# Riley_Cell_Function:
>>>
Information transfer
DNA related
DNA replication
||
>>>
Information transfer
RNA related
Transcription related
||
>>>
Regulation
Type of regulation
DNA structure level
DNA bending, supercoiling, inversion
||
>>>
Location of gene products
Cytoplasm
# Gene_Ontology:
>>>
Function: binding
Function: nucleic acid binding
Function: DNA binding
||
>>>
Function: binding
Function: nucleic acid binding
Function: DNA binding
||
>>>
Function: binding
Function: nucleic acid binding
Function: DNA binding
||
>>>
Function: binding
Function: nucleic acid binding
Function: DNA binding
||
>>>
Function: binding
Function: nucleic acid binding
Function: DNA binding
||
>>>
Function: binding
Function: nucleic acid binding
||
>>>
Function: binding
Function: nucleic acid binding
||
>>>
Process: physiological process
Process: metabolism
Process: macromolecule metabolism
Process: biopolymer metabolism
Process: DNA metabolism
Process: DNA topological change
||
>>>
Process: cellular metabolism
Process: nucleobase, nucleoside, nucleotide and nucleic acid metabolism
Process: DNA metabolism
Process: DNA topological change
||
>>>
Process: primary metabolism
Process: nucleobase, nucleoside, nucleotide and nucleic acid metabolism
Process: DNA metabolism
Process: DNA topological change
||
>>>
Process: cellular physiological process
Process: cellular metabolism
Process: nucleobase, nucleoside, nucleotide and nucleic acid metabolism
Process: DNA metabolism
Process: DNA topological change
||
>>>
Process: cellular process
Process: cellular physiological process
Process: cellular metabolism
Process: nucleobase, nucleoside, nucleotide and nucleic acid metabolism
Process: DNA metabolism
Process: DNA topological change
Process: physiological process
Process: metabolism
Process: macromolecule metabolism
Process: biopolymer metabolism
Process: DNA metabolism
Process: DNA topological change
||
>>>
Process: cellular metabolism
Process: nucleobase, nucleoside, nucleotide and nucleic acid metabolism
Process: DNA metabolism
Process: DNA topological change
||
>>>
Process: primary metabolism
Process: nucleobase, nucleoside, nucleotide and nucleic acid metabolism
Process: DNA metabolism
Process: DNA topological change
||
>>>
Process: cellular physiological process
Process: cellular metabolism
Process: nucleobase, nucleoside, nucleotide and nucleic acid metabolism
Process: DNA metabolism
Process: DNA topological change
||
>>>
Process: cellular process
Process: cellular physiological process
Process: cellular metabolism
Process: nucleobase, nucleoside, nucleotide and nucleic acid metabolism
Process: DNA metabolism
Process: DNA topological change
Process: physiological process
Process: metabolism
Process: macromolecule metabolism
Process: biopolymer metabolism
Process: DNA metabolism
Process: DNA topological change
||
>>>
Process: cellular metabolism
Process: nucleobase, nucleoside, nucleotide and nucleic acid metabolism
Process: DNA metabolism
Process: DNA topological change
||
>>>
Process: primary metabolism
Process: nucleobase, nucleoside, nucleotide and nucleic acid metabolism
Process: DNA metabolism
Process: DNA topological change
||
>>>
Process: cellular physiological process
Process: cellular metabolism
Process: nucleobase, nucleoside, nucleotide and nucleic acid metabolism
Process: DNA metabolism
Process: DNA topological change
||
>>>
Process: cellular process
Process: cellular physiological process
Process: cellular metabolism
Process: nucleobase, nucleoside, nucleotide and nucleic acid metabolism
Process: DNA metabolism
Process: DNA topological change
Process: physiological process
Process: metabolism
Process: macromolecule metabolism
Process: biopolymer metabolism
Process: DNA metabolism
Process: DNA topological change
||
>>>
Process: cellular metabolism
Process: nucleobase, nucleoside, nucleotide and nucleic acid metabolism
Process: DNA metabolism
Process: DNA topological change
||
>>>
Process: primary metabolism
Process: nucleobase, nucleoside, nucleotide and nucleic acid metabolism
Process: DNA metabolism
Process: DNA topological change
||
>>>
Process: cellular physiological process
Process: cellular metabolism
Process: nucleobase, nucleoside, nucleotide and nucleic acid metabolism
Process: DNA metabolism
Process: DNA topological change
||
>>>
Process: cellular process
Process: cellular physiological process
Process: cellular metabolism
Process: nucleobase, nucleoside, nucleotide and nucleic acid metabolism
Process: DNA metabolism
Process: DNA topological change
Process: physiological process
Process: metabolism
Process: macromolecule metabolism
Process: biopolymer metabolism
Process: DNA metabolism
Process: DNA topological change
||
>>>
Process: cellular metabolism
Process: nucleobase, nucleoside, nucleotide and nucleic acid metabolism
Process: DNA metabolism
Process: DNA topological change
||
>>>
Process: primary metabolism
Process: nucleobase, nucleoside, nucleotide and nucleic acid metabolism
Process: DNA metabolism
Process: DNA topological change
||
>>>
Process: cellular physiological process
Process: cellular metabolism
Process: nucleobase, nucleoside, nucleotide and nucleic acid metabolism
Process: DNA metabolism
Process: DNA topological change
||
>>>
Process: cellular process
Process: cellular physiological process
Process: cellular metabolism
Process: nucleobase, nucleoside, nucleotide and nucleic acid metabolism
Process: DNA metabolism
Process: DNA topological change
Process: physiological process
Process: metabolism
Process: macromolecule metabolism
Process: biopolymer metabolism
Process: DNA metabolism
Process: DNA modification
||
>>>
Process: biopolymer modification
Process: DNA modification
||
>>>
Process: cellular metabolism
Process: nucleobase, nucleoside, nucleotide and nucleic acid metabolism
Process: DNA metabolism
Process: DNA modification
||
>>>
Process: primary metabolism
Process: nucleobase, nucleoside, nucleotide and nucleic acid metabolism
Process: DNA metabolism
Process: DNA modification
||
>>>
Process: cellular physiological process
Process: cellular metabolism
Process: nucleobase, nucleoside, nucleotide and nucleic acid metabolism
Process: DNA metabolism
Process: DNA modification
||
>>>
Process: cellular process
Process: cellular physiological process
Process: cellular metabolism
Process: nucleobase, nucleoside, nucleotide and nucleic acid metabolism
Process: DNA metabolism
Process: DNA modification
Process: physiological process
Process: metabolism
Process: macromolecule metabolism
Process: biopolymer metabolism
Process: DNA metabolism
Process: DNA modification
||
>>>
Process: biopolymer modification
Process: DNA modification
||
>>>
Process: cellular metabolism
Process: nucleobase, nucleoside, nucleotide and nucleic acid metabolism
Process: DNA metabolism
Process: DNA modification
||
>>>
Process: primary metabolism
Process: nucleobase, nucleoside, nucleotide and nucleic acid metabolism
Process: DNA metabolism
Process: DNA modification
||
>>>
Process: cellular physiological process
Process: cellular metabolism
Process: nucleobase, nucleoside, nucleotide and nucleic acid metabolism
Process: DNA metabolism
Process: DNA modification
||
>>>
Process: cellular process
Process: cellular physiological process
Process: cellular metabolism
Process: nucleobase, nucleoside, nucleotide and nucleic acid metabolism
Process: DNA metabolism
Process: DNA modification
||
>>>
Component: cell
Component: intracellular
Component: chromosome
||
>>>
Component: intracellular organelle
Component: intracellular non-membrane-bound organelle
Component: chromosome
||
>>>
Component: organelle
Component: non-membrane-bound organelle
Component: intracellular non-membrane-bound organelle
Component: chromosome
||
>>>
Component: intracellular organelle
Component: intracellular non-membrane-bound organelle
Component: chromosome
||
>>>
Component: cell
Component: intracellular
Component: chromosome
||
>>>
Component: intracellular organelle
Component: intracellular non-membrane-bound organelle
Component: chromosome
||
>>>
Component: organelle
Component: non-membrane-bound organelle
Component: intracellular non-membrane-bound organelle
Component: chromosome
||
>>>
Component: intracellular organelle
Component: intracellular non-membrane-bound organelle
Component: chromosome
||
>>>
Component: cell
Component: intracellular
Component: chromosome
||
>>>
Component: intracellular organelle
Component: intracellular non-membrane-bound organelle
Component: chromosome
||
>>>
Component: organelle
Component: non-membrane-bound organelle
Component: intracellular non-membrane-bound organelle
Component: chromosome
||
>>>
Component: intracellular organelle
Component: intracellular non-membrane-bound organelle
Component: chromosome
||
>>>
Component: cell
Component: intracellular
Component: chromosome
||
>>>
Component: intracellular organelle
Component: intracellular non-membrane-bound organelle
Component: chromosome
||
>>>
Component: organelle
Component: non-membrane-bound organelle
Component: intracellular non-membrane-bound organelle
Component: chromosome
||
>>>
Component: intracellular organelle
Component: intracellular non-membrane-bound organelle
Component: chromosome
||
>>>
Component: cell
Component: intracellular
Component: chromosome
||
>>>
Component: intracellular organelle
Component: intracellular non-membrane-bound organelle
Component: chromosome
||
>>>
Component: organelle
Component: non-membrane-bound organelle
Component: intracellular non-membrane-bound organelle
Component: chromosome
||
>>>
Component: intracellular organelle
Component: intracellular non-membrane-bound organelle
Component: chromosome
# Location:
Cytoplasm
# Blattner_Number:
b1274
# Gene_Sequence:
ATGGGTAAAGCTCTTGTCATCGTTGAGTCCCCGGCAAAAGCCAAAACGATCAACAAGTATCTGGGTAGTG
ACTACGTGGTGAAATCCAGCGTCGGTCACATCCGCGATTTGCCGACCAGTGGCTCAGCTGCCAAAAAGAG
TGCCGACTCTACCTCCACCAAGACGGCTAAAAAGCCTAAAAAGGATGAACGTGGCGCTCTCGTCAACCGT
ATGGGGGTTGACCCGTGGCACAATTGGGAGGCGCACTATGAAGTGTTGCCTGGTAAAGAGAAGGTCGTCT
CTGAACTGAAACAACTGGCTGAAAAAGCCGACCACATCTATCTCGCAACCGACCTTGACCGCGAAGGGGA
AGCCATTGCATGGCACCTGCGGGAAGTGATTGGGGGTGATGATGCGCGCTATAGCCGAGTGGTGTTTAAC
GAAATTACTAAAAACGCGATCCGCCAGGCATTTAACAAACCGGGTGAGCTGAATATTGATCGTGTTAATG
CCCAGCAGGCGCGTCGCTTTATGGACCGCGTGGTGGGGTATATGGTTTCGCCGCTGCTATGGAAAAAGAT
CGCTCGTGGCCTGTCTGCCGGTCGTGTGCAGTCGGTGGCGGTTCGCCTGGTGGTCGAGCGTGAGCGTGAA
ATTAAAGCGTTCGTGCCGGAAGAGTTCTGGGAAGTCGATGCCAGCACGACCACGCCATCTGGTGAAGCGT
TGGCGTTACAGGTGACTCATCAGAACGACAAACCGTTCCGTCCGGTCAACAAAGAACAAACTCAGGCTGC
GGTAAGTCTGCTGGAAAAAGCGCGCTACAGCGTGCTGGAACGTGAAGACAAACCGACAACCAGTAAACCT
GGCGCTCCTTTTATTACCTCTACGCTGCAACAAGCTGCCAGCACCCGTCTTGGATTTGGCGTGAAAAAAA
CCATGATGATGGCGCAGCGTTTGTATGAAGCAGGCTATATCACTTACATGCGTACCGACTCCACTAACCT
GAGTCAGGACGCGGTAAATATGGTTCGCGGTTATATCAGCGATAATTTTGGTAAGAAATATCTGCCGGAA
AGTCCGAATCAGTACGCCAGCAAAGAAAACTCACAGGAAGCGCACGAAGCGATTCGTCCTTCTGACGTCA
ATGTGATGGCGGAATCGCTGAAGGATATGGAAGCAGATGCGCAGAAACTGTACCAGTTAATCTGGCGTCA
GTTCGTTGCCTGCCAGATGACCCCAGCGAAATATGACTCCACGACGCTGACCGTTGGTGCGGGCGATTTC
CGCCTGAAAGCACGCGGTCGTATTTTGCGTTTTGATGGCTGGACAAAAGTGATGCCTGCGTTGCGTAAAG
GCGATGAAGATCGCATCTTACCAGCAGTTAATAAAGGCGATGCTCTGACGCTCGTTGAACTTACACCAGC
CCAGCACTTTACCAAGCCGCCAGCCCGTTTCAGTGAAGCATCGCTGGTTAAAGAGCTGGAAAAACGCGGT
ATCGGTCGTCCGTCTACCTATGCGTCGATCATTTCGACCATTCAGGATCGTGGCTACGTGCGAGTAGAAA
ATCGTCGTTTCTATGCGGAAAAAATGGGCGAAATCGTCACCGATCGCCTTGAAGAAAATTTCCGCGAGTT
AATGAACTACGACTTTACCGCGCAGATGGAAAACAGCCTCGACCAGGTGGCAAATCACGAAGCAGAGTGG
AAAGCTGTACTGGATCACTTCTTCTCGGATTTCACCCAGCAGTTAGATAAAGCTGAAAAAGATCCGGAAG
AGGGTGGTATGCGCCCGAACCAGATGGTTCTGACCAGCATTGACTGCCCGACTTGTGGTCGCAAAATGGG
GATTCGCACAGCGAGCACCGGGGTATTCCTTGGCTGTTCTGGCTATGCGCTGCCGCCGAAAGAGCGTTGC
AAAACCACCATTAACCTGGTGCCGGAAAACGAAGTGCTGAACGTGCTGGAAGGCGAAGATGCTGAAACCA
ACGCGCTGCGCGCAAAACGTCGTTGCCCGAAATGCGGCACGGCGATGGACAGCTATCTCATCGATCCGAA
ACGTAAGTTGCATGTCTGTGGTAATAACCCAACCTGCGACGGTTACGAGATCGAAGAGGGCGAATTCCGC
ATTAAAGGTTATGACGGCCCGATCGTTGAGTGTGAAAAATGTGGCTCTGAAATGCACCTGAAAATGGGGC
GTTTCGGTAAATACATGGCCTGCACCAACGAAGAGTGTAAAAACACACGTAAGATTTTACGTAACGGCGA
AGTGGCACCACCGAAAGAAGATCCGGTGCCATTACCTGAGCTGCCGTGCGAAAAATCAGATGCTTATTTC
GTGCTGCGTGACGGTGCTGCCGGTGTGTTCCTGGCTGCCAACACTTTCCCGAAATCGCGTGAAACGCGTG
CGCCACTGGTGGAAGAGCTTTATCGCTTCCGCGACCGTCTGCCGGAAAAACTGCGTTATCTGGCCGATGC
GCCACAGCAGGATCCGGAAGGTAATAAGACCATGGTTCGCTTTAGCCGTAAAACCAAACAGCAATATGTC
TCTTCGGAAAAAGACGGAAAGGCGACTGGCTGGTCAGCATTTTATGTTGATGGCAAATGGGTTGAAGGAA
AAAAATAA
# Upstream_100_bases:
ATATCCGCAGAGAGCGAGTCCATATCGGTAACTCGTTGCCAGTGGAAGGTTTATCAACGTGCGACGCATT
CCTGGAAGAATCAAATTAGGTAAGGTGAAT
# Blattner_No_Ontology:
DNA replication, recombination, modification and repair
# Gene_Position:
1329072-1331669 (Clockwise)
# Centisome_Position:
28.646
# Gene_Name:
topA or supX
# GC_Content:
51.77%
# Metabolic_Importance:
Essential
# Preceding_Gene:
yciN
# Following_Gene:
cysB
# Operon_Status:
No
# Operon_Components:
None
# Paralogues:
None
# Copy Number:
Unknown
# RNA_Copy_No.:
Log phase (2max): 0.15
Stationary phase (2max): 0.24
Ref: Nature Biotech., 18, 1262-68, Dec. 2000 (PMID=11101804)
# Genbank_ID_(DNA):
G1787529
# Genbank_ID_(Protein):
AAC74356.1
# SWISS_PROT_(AC_&_ID):
$ TOP1_ECOLI (P06612)
# 2D_Gel_Image:
Not Available
# Other_Databases:
- ECO2DBASE: I115.0
- ECOCYC: EG11013
- EcoGene: EG11013
- EMBL: X04475
- InterPro: IPR000380; IPR003601; IPR003602; IPR005733; IPR013263; IPR006171; IPR006154
- Pfam: PF08272; PF01751
- PIR: E64875
- PRINTS: PR00417
- PROSITE: PS00396
# Pfam_Domain/Function:
PF01131 DNA topoisomerase; PF01751 Toprim domain; PF01396 Topoisomerase DNA binding C4 zinc finger;
# Homologues:
Organism=Homo sapiens, GI4507635, Length=862, Positives=44%, Blast Score=134
Organism=Homo sapiens, GI10835218, Length=1001, Positives=39%, Blast Score=131
Organism=Caenorhabditis elegans, GI17555378, Length=759, Positives=43%, Blast Score=129
Organism=Caenorhabditis elegans, GI32563869, Length=855, Positives=42%, Blast Score=122
Organism=Mus musculus, GI6678403, Length=1003, Positives=41%, Blast Score=135
Organism=Mus musculus, GI6755851, Length=862, Positives=44%, Blast Score=134
Organism=Drosophila melanogaster, GI24585251, Length=1250, Positives=41%, Blast Score=123
Organism=Drosophila melanogaster, GI24640096, Length=875, Positives=40%, Blast Score=111
# Similarity:
Belongs to the prokaryotic type I/III topoisomerase family.
# EC_Number:
5.99.1.2
# No._of_Amino_Acids:
865 (Translated Protein)
864 (Mature Protein)
# Molecular_Weight:
97351 97219
# Theoretical_pI:
8.64
# Theoretical_pI (Mature):
8.64
# Sequence:
// MGKALVIVESPAKAKTINKYLGSDYVVKSSVGHIRDLPTSGSAAKKSADSTSTKTAKKPK
// KDERGALVNRMGVDPWHNWEAHYEVLPGKEKVVSELKQLAEKADHIYLATDLDREGEAIA
// WHLREVIGGDDARYSRVVFNEITKNAIRQAFNKPGELNIDRVNAQQARRFMDRVVGYMVS
// PLLWKKIARGLSAGRVQSVAVRLVVEREREIKAFVPEEFWEVDASTTTPSGEALALQVTH
// QNDKPFRPVNKEQTQAAVSLLEKARYSVLEREDKPTTSKPGAPFITSTLQQAASTRLGFG
// VKKTMMMAQRLYEAGYITYMRTDSTNLSQDAVNMVRGYISDNFGKKYLPESPNQYASKEN
// SQEAHEAIRPSDVNVMAESLKDMEADAQKLYQLIWRQFVACQMTPAKYDSTTLTVGAGDF
// RLKARGRILRFDGWTKVMPALRKGDEDRILPAVNKGDALTLVELTPAQHFTKPPARFSEA
// SLVKELEKRGIGRPSTYASIISTIQDRGYVRVENRRFYAEKMGEIVTDRLEENFRELMNY
// DFTAQMENSLDQVANHEAEWKAVLDHFFSDFTQQLDKAEKDPEEGGMRPNQMVLTSIDCP
// TCGRKMGIRTASTGVFLGCSGYALPPKERCKTTINLVPENEVLNVLEGEDAETNALRAKR
// RCPKCGTAMDSYLIDPKRKLHVCGNNPTCDGYEIEEGEFRIKGYDGPIVECEKCGSEMHL
// KMGRFGKYMACTNEECKNTRKILRNGEVAPPKEDPVPLPELPCEKSDAYFVLRDGAAGVF
// LAANTFPKSRETRAPLVEELYRFRDRLPEKLRYLADAPQQDPEGNKTMVRFSRKTKQQYV
// SSEKDGKATGWSAFYVDGKWVEGKK
// /\
// GKALVIVESPAKAKTINKYLGSDYVVKSSVGHIRDLPTSGSAAKKSADSTSTKTAKKPKK
// DERGALVNRMGVDPWHNWEAHYEVLPGKEKVVSELKQLAEKADHIYLATDLDREGEAIAW
// HLREVIGGDDARYSRVVFNEITKNAIRQAFNKPGELNIDRVNAQQARRFMDRVVGYMVSP
// LLWKKIARGLSAGRVQSVAVRLVVEREREIKAFVPEEFWEVDASTTTPSGEALALQVTHQ
// NDKPFRPVNKEQTQAAVSLLEKARYSVLEREDKPTTSKPGAPFITSTLQQAASTRLGFGV
// KKTMMMAQRLYEAGYITYMRTDSTNLSQDAVNMVRGYISDNFGKKYLPESPNQYASKENS
// QEAHEAIRPSDVNVMAESLKDMEADAQKLYQLIWRQFVACQMTPAKYDSTTLTVGAGDFR
// LKARGRILRFDGWTKVMPALRKGDEDRILPAVNKGDALTLVELTPAQHFTKPPARFSEAS
// LVKELEKRGIGRPSTYASIISTIQDRGYVRVENRRFYAEKMGEIVTDRLEENFRELMNYD
// FTAQMENSLDQVANHEAEWKAVLDHFFSDFTQQLDKAEKDPEEGGMRPNQMVLTSIDCPT
// CGRKMGIRTASTGVFLGCSGYALPPKERCKTTINLVPENEVLNVLEGEDAETNALRAKRR
// CPKCGTAMDSYLIDPKRKLHVCGNNPTCDGYEIEEGEFRIKGYDGPIVECEKCGSEMHLK
// MGRFGKYMACTNEECKNTRKILRNGEVAPPKEDPVPLPELPCEKSDAYFVLRDGAAGVFL
// AANTFPKSRETRAPLVEELYRFRDRLPEKLRYLADAPQQDPEGNKTMVRFSRKTKQQYVS
// SEKDGKATGWSAFYVDGKWVEGKK
# PROSITE_Motif:
TOPOISOMERASE_I_PROK; PATTERN. PS00396; Prokaryotic DNA topoisomerase I active site. [EQ]-x-L-Y-[DEQST]-x(3,12)-[LIV]-[ST]-Y-x-R-[ST]-[DEQS]. PDOC00333; //
# Important_Sites:
Active_Site 319 319 DNA Cleavage
# Transmembrane:
Not Available
# Cys/Met_Content:
1.6 %Cys (Translated Protein)
2.8 %Met (Translated Protein)
4.4 %Cys+Met (Translated Protein)
1.6 %Cys (Mature Protein)
2.7 %Met (Mature Protein)
4.3 %Cys+Met (Mature Protein)
# Secondary_Structure_(PDB):
GKALVIVESPAKAKTINKYLGSDYVVKSSVGHIRDLPTDERGALVNRMGVD
CEEEEEEECHHHHHHHHHCCCCEEEEEEECCCEEEECCCCCHHHHHHHCCC
PWHNWEAHYEVLPGKEKVVSELKQLAEKADHIYLATDLDREGEAIAWHLRE
CCCCCEEEEEEECCHHHHHHHHHHHHHCCEEEEEECCCCHHHHHHHHHHHH
VIGGDDARYSRVVFNEITKNAIRQAFNKPGELNIDRVNAQQARRFMDRVVG
HHCCCCCCEEEECCCCCCHHHHHHHHHCEEECCHHHHHHHHHHHHHHHHHH
YMVSPLLWKKIARGLSAGRVQSVAVRLVVEREREIKAFVPEEFWEVDASTT
HHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHHCCEEEEEEEEEEEE
TPSGEALALQVTHQNDKPFRPVNKEQTQAAVSLLEKARYSVLEREDKPTTS
CCCCEEEEEEEEEECCCCCCCCCHHHHHHHHHHHHCEEEEEECEEEEEEEE
KPGAPFITSTLQQAASTRLGFGVKKTMMMAQRLYEAGYITYMRTDSTNLSQ
ECCCEEEHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCEEEECCCCCCCCCH
DAVNMVRGYISDNFGKKYLPESPNQYENSQEAHEAIRPSDVNVMAESLKDM
HHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCEEEEEECCCCCCCCCCCC
EADAQKLYQLIWRQFVACQMTPAKYDSTTLTVGAGDFRLKARGRILRFDGW
CHHHHHHHHHHHHHHHHHCEEEEEEEEEEEEEEECCEEEEEEEEEEEECCC
TKVMPALILPAVNKGDALTLVELTPAQHFTKPPARFSEASLVKELEKRGIG
CCCCCCCCCCCEEECEEEEEEEEEEEEEEEECCCEEEHHHHHHHHHHHCCC
RPSTYASIISTIQDRGYVRVENRRFYAEKMGEIVTDRLEENFRELMNYDFT
CCCCHHHHHHCCCCCCEEEECCCEEEEEHHHHHHHHHHHHHCHHHHCHHHH
AQMENSLDQVANHEAEWKAVLDHFFSDFTQQLDKAEKDPEEGGMRPNQMVL
HHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHCCCCCCEEECCCCCC
TS
CC
# PDB_Accession:
& 1CY7
# Resolution:
2.40 Angstroms
# Structure_CLASS:
Alpha Beta
# Quaternary_Structure:
monomer of topA
# Interacting_Partners:
None
TOP3_ECOLI.ecard:
# Interacting_Partners:
1) DNA, 2) yrdD (hypothetical),
# Cofactors:
Not Available
# Metals_Ions:
--Ca2+ --Co2+ --Mg2+
# Kcat_Value_[1/min]:
Not Available
# Specific_Activity_[micromol/min/mg]:
Not Available
# Km_Value_[mM]:
Not Available
# Substrates:
Single-stranded DNA + DNA
# Products:
Single-stranded DNA
# Specific_Reaction:
ATP-independent breakage of single-stranded DNA followed bypassage and rejoining
Protein + DNA = Protein-DNA
# General_Reaction:
Isomerization
# Inhibitor:
--Actinomycin D --Mg2+ --Neomycin sulfate --Single-stranded DNA
# Priority:
0.0
# Status:
Selected, Cloned, Expressed, Soluble, Purified
# Availability:
RSGI
#END_ECARDFILE
#BEGIN_ECARDFILE
# Entry_ID:
CC4162A.1
# Accession_No.:
UA0004162
# Name:
Hypothetical transport protein ydhK
# Alternate_Names:
Not Available
# General_Function:
PLP-dependent transferases
# COG_Function:
Function unknown (code S)
# COG_ID:
COG1289 Predicted membrane protein (Evalue = 0.0)
# Specific_Function:
Not Available
# Riley_Gene_Function:
putative membrane protein
# Riley_Cell_Function:
>>>
Cell structure
Membrane
# Gene_Ontology:
>>>
Function: Not Available
||
>>>
Process: Not Available
||
>>>
Component: Not Available
# Location:
Integral membrane protein (Potential)
# Blattner_Number:
b1645
# Gene_Sequence:
ATGAACGCATCGTCATGGTCCTTGCGCAATTTGCCCTGGTTCAGGGCCACGCTGGCGCAATGGCGTTATG
CGTTACGCAATACCATTGCCATGTGTCTGGCGCTGACGGTTGCCTATTATTTAAATCTGGATGAACCCTA
TTGGGCGATGACCTCGGCTGCAGTGGTTAGCTTTCCCACCGTTGGCGGTGTTATCAGCAAAAGCCTCGGA
CGCATCGCTGGCAGTTTGCTCGGAGCCATTGCGGCACTGCTTCTTGCCGGGCATACGCTCAATGAGCCGT
GGTTTTTTCTATTGAGCATGTCGGCGTGGCTTGGCTTTTGTACCTGGGCCTGTGCGCACTTCACGAATAA
CGTCGCGTATGCATTTCAACTGGCGGGCTACACGGCTGCCATCATCGCCTTTCCGATGGTTAATATTACT
GAGGCCAGCCAGCTGTGGGATATCGCTCAGGCGCGCGTTTGCGAGGTAATAGTCGGTATTTTGTGCGGCG
GCATGATGATGATGATCCTGCCGAGCAGTTCCGATGCTACTGCCCTTTTAACCGCATTGAAAAACATGCA
CGCCCGATTACTGGAACATGCCAGTTTACTCTGGCAGCCTGAAACAACCGATGCCATTCGTGCAGCACAT
GAAGGGGTGATTGGGCAGATACTGACCATGAATTTGCTGCGTATCCAGGCTTTCTGGAGCCACTATCGTT
TTCGCCAGCAAAACGCGCGCCTTAATGCGCTGCTCCACCAGCAATTACGTATGACCAGTGTCATCTCCAG
CCTGCGACGTATGTTGCTCAACTGGCCCTCACCGCCAGGTGCCACACGAGAAATTCTCGAACAGTTGCTG
ACGGCGCTCGCCAGTTCGCAAACAGATGTTTACACCGTCGCACGTATTATCGCCCCGCTACGCCCGACCA
ACGTCGCCGACTATCGGCACGTCGCCTTCTGGCAGCGACTACGTTATTTTTGCCGCCTTTATCTGCAAAG
TAGTCAGGAATTACATCGTCTGCAAAGCGGTGTAGATGATCATACCAGACTCCCACGGACATCCGGCCTG
GCTCGTCATACCGATAACGCCGAAGCTATGTGGAGCGGGCTGCGTACATTTTGTACGTTGATGATGATTG
GCGCATGGAGTATTGCTTCGCAATGGGATGCCGGTGCCAATGCATTAACGCTGGCAGCAATTAGCTGCGT
ACTCTACTCCGCCGTCGCAGCACCGTTTAAGTCGTTGTCACTTCTGATGCGCACGCTGGTGTTACTTTCG
CTATTCAGCTTTGTGGTCAAATTTGGTCTGATGGTCCAGATTAGCGATCTGTGGCAATTTTTACTGTTTC
TCTTTCCACTGCTGGCGACAATGCAGCTTCTTAAATTGCAGATGCCAAAATTTGCCGCATTGTGGGGGCA
ACTGATTGTTTTTATGGGTTCTTTTATCGCTGTCACTAATCCCCCGGTGTATGATTTTGCTGATTTTCTT
AACGATAATCTGGCAAAAATCGTTGGCGTCGCGTTGGCGTGGTTAGCGTTCGCCATTCTGCGTCCAGGAT
CGGATGCTCGTAAAAGCCGCCGCCATATTCGCGCGCTGCGCCGGGATTTTGTCGATCAGCTAAGCCGCCA
TCCAACACTGAGTGAAAGCGAATTTGAATCGCTCACTTATCATCACGTCAGTCAGTTGAGTAACAGCCAG
GATGCGCTGGCTCGCCGTTGGTTATTACGCTGGGGTGTAGTGCTGCTGAACTGTTCTCATGTTGTCTGGC
AATTGCGCGACTGGGAATCGCGTTCCGATCCGTTATCGCGAGTACGGGATAACTGTATTTCACTGTTGCG
GGGAGTGATGAGTGAGCGTGGCGTTCAGCAAAAATCACTGGCGGCCACACTTGAAGAATTACAGCGGATT
TGCGACAGCCTTGCCCGTCATCATCAACCTGCCGCCCGTGAGCTGGCGGCAATTGTCTGGCGGCTGTACT
GCTCGCTTTCGCAACTTGAGCAAGCACCACCGCAAGGTACGCTGGCCTCTTAA
# Upstream_100_bases:
GACTCGCCCAACGCGTTCCCGTCCGCTTTGCGCTGGATAAAGTCCCAGGCGATGTCACGTTGGTGTCGGG
CACCACCTGTAGCATTGCCGTAGGTCAATA
# Blattner_No_Ontology:
Hypothetical, unclassified, unknown
# Gene_Position:
1720145-1722157 (Clockwise)
# Centisome_Position:
37.075
# Gene_Name:
ydhK
# GC_Content:
52.76%
# Metabolic_Importance:
Unknown
# Preceding_Gene:
ydhJ
# Following_Gene:
sodC
# Operon_Status:
Yes
# Operon_Components:
ydhI_ydhJ_ydhK Ref: RegulonDB http://kinich.cifn.unam.mx:8850/db/regulondb_cgi.query_simple?v_organism=ECK12&v_table=3&v_name=ydhK
# Paralogues:
b3240 (yhcP) 23;
# Copy Number:
Not Available
# RNA_Copy_No.:
Not Available
# Genbank_ID_(DNA):
D90807
# Genbank_ID_(Protein):
BAA15405.1
# SWISS_PROT_(AC_&_ID):
$ YDHK_ECOLI (P76186)
# 2D_Gel_Image:
Not Available
# Other_Databases:
- ECOCYC: EG13945
- EcoGene: EG13945
- EMBL: U00096
- InterPro: IPR006726
- Pfam: PF04632
- PIR: G64921
# Pfam_Domain/Function:
PF04632 Fusaric acid resistance protein conserved region;
# Homologues:
Not Available
# Similarity:
Belongs to the aromatic acid exporter ArAE (TC 2.A.85) family.
# EC_Number:
Not Available
# No._of_Amino_Acids:
670 (Translated Protein)
670 (Mature Protein)
# Molecular_Weight:
75268 75268
# Theoretical_pI:
9.58
# Theoretical_pI (Mature):
9.58
# Sequence:
// MNASSWSLRNLPWFRATLAQWRYALRNTIAMCLALTVAYYLNLDEPYWAMTSAAVVSFPT
// VGGVISKSLGRIAGSLLGAIAALLLAGHTLNEPWFFLLSMSAWLGFCTWACAHFTNNVAY
// AFQLAGYTAAIIAFPMVNITEASQLWDIAQARVCEVIVGILCGGMMMMILPSSSDATALL
// TALKNMHARLLEHASLLWQPETTDAIRAAHEGVIGQILTMNLLRIQAFWSHYRFRQQNAR
// LNALLHQQLRMTSVISSLRRMLLNWPSPPGATREILEQLLTALASSQTDVYTVARIIAPL
// RPTNVADYRHVAFWQRLRYFCRLYLQSSQELHRLQSGVDDHTRLPRTSGLARHTDNAEAM
// WSGLRTFCTLMMIGAWSIASQWDAGANALTLAAISCVLYSAVAAPFKSLSLLMRTLVLLS
// LFSFVVKFGLMVQISDLWQFLLFLFPLLATMQLLKLQMPKFAALWGQLIVFMGSFIAVTN
// PPVYDFADFLNDNLAKIVGVALAWLAFAILRPGSDARKSRRHIRALRRDFVDQLSRHPTL
// SESEFESLTYHHVSQLSNSQDALARRWLLRWGVVLLNCSHVVWQLRDWESRSDPLSRVRD
// NCISLLRGVMSERGVQQKSLAATLEELQRICDSLARHHQPAARELAAIVWRLYCSLSQLE
// QAPPQGTLAS
// /\
// MNASSWSLRNLPWFRATLAQWRYALRNTIAMCLALTVAYYLNLDEPYWAMTSAAVVSFPT
// VGGVISKSLGRIAGSLLGAIAALLLAGHTLNEPWFFLLSMSAWLGFCTWACAHFTNNVAY
// AFQLAGYTAAIIAFPMVNITEASQLWDIAQARVCEVIVGILCGGMMMMILPSSSDATALL
// TALKNMHARLLEHASLLWQPETTDAIRAAHEGVIGQILTMNLLRIQAFWSHYRFRQQNAR
// LNALLHQQLRMTSVISSLRRMLLNWPSPPGATREILEQLLTALASSQTDVYTVARIIAPL
// RPTNVADYRHVAFWQRLRYFCRLYLQSSQELHRLQSGVDDHTRLPRTSGLARHTDNAEAM
// WSGLRTFCTLMMIGAWSIASQWDAGANALTLAAISCVLYSAVAAPFKSLSLLMRTLVLLS
// LFSFVVKFGLMVQISDLWQFLLFLFPLLATMQLLKLQMPKFAALWGQLIVFMGSFIAVTN
// PPVYDFADFLNDNLAKIVGVALAWLAFAILRPGSDARKSRRHIRALRRDFVDQLSRHPTL
// SESEFESLTYHHVSQLSNSQDALARRWLLRWGVVLLNCSHVVWQLRDWESRSDPLSRVRD
// NCISLLRGVMSERGVQQKSLAATLEELQRICDSLARHHQPAARELAAIVWRLYCSLSQLE
// QAPPQGTLAS
# PROSITE_Motif:
Hypothetical hesB/yadR/yfhF family signature.
F-x-[LIVMFY]-x-N-[PG]-[NSKQ]-x(4)-C-x-C-[GS]-x-S-F.
# Important_Sites:
Not Available
# Transmembrane:
Transmembrane 23 42 Potential
Transmembrane 47 69 Potential
Transmembrane 76 98 Potential
Transmembrane 118 140 Potential
Transmembrane 153 170 Potential
Transmembrane 381 403 Potential
Transmembrane 410 432 Potential
Transmembrane 437 454 Potential
Transmembrane 461 483 Potential
Transmembrane 493 510 Potential
# Cys/Met_Content:
1.8 %Cys (Translated Protein)
3.3 %Met (Translated Protein)
5.1 %Cys+Met (Translated Protein)
1.8 %Cys (Mature Protein)
3.3 %Met (Mature Protein)
5.1 %Cys+Met (Mature Protein)
# Secondary_Structure_(PDB):
>YDHK_ECOLI (Translated Protein)
MNASSWSLRNLPWFRATLAQWRYALRNTIAMCLALTVAYYLNLDEPYWAMTSAAVVSFPT
CCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHCCCC
VGGVISKSLGRIAGSLLGAIAALLLAGHTLNEPWFFLLSMSAWLGFCTWACAHFTNNVAY
HHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCHH
AFQLAGYTAAIIAFPMVNITEASQLWDIAQARVCEVIVGILCGGMMMMILPSSSDATALL
EEECCCHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHCCCEEEEEEECCCCHHHHH
TALKNMHARLLEHASLLWQPETTDAIRAAHEGVIGQILTMNLLRIQAFWSHYRFRQQNAR
HHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCH
LNALLHQQLRMTSVISSLRRMLLNWPSPPGATREILEQLLTALASSQTDVYTVARIIAPL
HHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHCCC
RPTNVADYRHVAFWQRLRYFCRLYLQSSQELHRLQSGVDDHTRLPRTSGLARHTDNAEAM
CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCHHHH
WSGLRTFCTLMMIGAWSIASQWDAGANALTLAAISCVLYSAVAAPFKSLSLLMRTLVLLS
HHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
LFSFVVKFGLMVQISDLWQFLLFLFPLLATMQLLKLQMPKFAALWGQLIVFMGSFIAVTN
HHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHCCC
PPVYDFADFLNDNLAKIVGVALAWLAFAILRPGSDARKSRRHIRALRRDFVDQLSRHPTL
CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHCCCCC
SESEFESLTYHHVSQLSNSQDALARRWLLRWGVVLLNCSHVVWQLRDWESRSDPLSRVRD
CHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHCCHHHHHHHHCCCCCCCCHHHHHH
NCISLLRGVMSERGVQQKSLAATLEELQRICDSLARHHQPAARELAAIVWRLYCSLSQLE
HHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHH
QAPPQGTLAS
CCCCCCCCCC
/\
>YDHK_ECOLI (Mature Protein)
NASSWSLRNLPWFRATLAQWRYALRNTIAMCLALTVAYYLNLDEPYWAMTSAAVVSFPTV
CCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHCCCCH
GGVISKSLGRIAGSLLGAIAALLLAGHTLNEPWFFLLSMSAWLGFCTWACAHFTNNVAYA
HHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCHHE
FQLAGYTAAIIAFPMVNITEASQLWDIAQARVCEVIVGILCGGMMMMILPSSSDATALLT
EECCCHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHCCCEEEEEEECCCCHHHHHH
ALKNMHARLLEHASLLWQPETTDAIRAAHEGVIGQILTMNLLRIQAFWSHYRFRQQNARL
HHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHH
NALLHQQLRMTSVISSLRRMLLNWPSPPGATREILEQLLTALASSQTDVYTVARIIAPLR
HHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHCCCC
PTNVADYRHVAFWQRLRYFCRLYLQSSQELHRLQSGVDDHTRLPRTSGLARHTDNAEAMW
CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCHHHHH
SGLRTFCTLMMIGAWSIASQWDAGANALTLAAISCVLYSAVAAPFKSLSLLMRTLVLLSL
HHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
FSFVVKFGLMVQISDLWQFLLFLFPLLATMQLLKLQMPKFAALWGQLIVFMGSFIAVTNP
HHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHCCCC
PVYDFADFLNDNLAKIVGVALAWLAFAILRPGSDARKSRRHIRALRRDFVDQLSRHPTLS
CCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHCCCCCC
ESEFESLTYHHVSQLSNSQDALARRWLLRWGVVLLNCSHVVWQLRDWESRSDPLSRVRDN
HHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHCCHHHHHHHHCCCCCCCCHHHHHHH
CISLLRGVMSERGVQQKSLAATLEELQRICDSLARHHQPAARELAAIVWRLYCSLSQLEQ
HHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHC
APPQGTLAS
CCCCCCCCC
# PDB_Accession:
& Not Available
# Resolution:
Not Available
# Structure_CLASS:
Unstructured
# Quaternary_Structure:
Not Available
# Interacting_Partners:
Not Available
# Cofactors:
Not Available
# Metals_Ions:
Not Available
# Kcat_Value_[1/min]:
Not Available
# Specific_Activity_[micromol/min/mg]:
Not Available
# Km_Value_[mM]:
Not Available
# Substrates:
Not Available
# Products:
Not Available
# Specific_Reaction:
Not Available
# General_Reaction:
Not Available
# Inhibitor:
Not Available
# Priority:
6.4
# Status:
Not Available
# Availability:
Not Available
#END_ECARDFILE
#BEGIN_ECARDFILE
# Entry_ID:
CC1492A.1
# Accession_No.:
UA0001492
# Name:
Hypothetical fimbrial chaperone yhcA precursor
# Alternate_Names:
Not Available
# General_Function:
Cellular processes; PapD-like; Periplasmic chaperone C-domain
# COG_Function:
Cell motility (code N)
# COG_ID:
COG3121 P pilus assembly protein, chaperone PapD (Evalue = 1e-125)
# Specific_Function:
Not Available
# Riley_Gene_Function:
putative periplasmic chaperone protein
# Riley_Cell_Function:
>>>
Information transfer
Protein related
Chaperoning, folding
||
>>>
Location of gene products
Periplasmic space
# Gene_Ontology:
>>>
Function: binding
Function: protein binding
||
>>>
Process: physiological process
Process: cellular physiological process
Process: cell organization and biogenesis
Process: external encapsulating structure organization and biogenesis
Process: cell wall organization and biogenesis
||
>>>
Process: cellular process
Process: cellular physiological process
Process: cell organization and biogenesis
Process: external encapsulating structure organization and biogenesis
Process: cell wall organization and biogenesis
||
>>>
Component: cell
Component: external encapsulating structure
Component: cell envelope
Component: periplasmic space (sensu Proteobacteria)
||
>>>
Component: periplasmic space
Component: periplasmic space (sensu Proteobacteria)
||
>>>
Component: envelope
Component: cell envelope
Component: periplasmic space (sensu Proteobacteria)
# Location:
Periplasmic Protein
# Blattner_Number:
b3215
# Gene_Sequence:
ATGCTCAGACACATTACATTCACTGTATTTATAACAACATCAATGAATACCTTAGCCACAGGGATGGTTC
CTGAAACATCAGTATTGCTGGTTGATGAAAAGCGTGGTGAAGCTAGTATTAATATTAAGAATACAGATGA
TCATCCTTCATTGCTTTACACCACCATTGTTGATTTGCCTGAAAGCAATAAATCAATTCGTTTAATCCCG
ACTCAGCCCGTTATTCGTGTTGAAGCCGGTCAAGTACAACAGGTTCGATTTTTACTTCAGGCGACTGTTC
CTCTGCAATCAGAAGAGCTGAAACGCGTAACGTTCGAAGGTATTCCACCAAAAGATGACAAGAGCAGCAG
AGTTACTGTTTCAATTCGTCAGGATCTACCTGTACTGATCCACCCGGCTTCCCTGCCGGAAGAGCGAGAG
ACCTGGAAATTCCTGGAATGGCGTAAAAATGGCGACCAAATTGAGATTAGCAACCCCAGTAATTATGTCG
TTCGTATGACCTTACAATTTAAAACGCTCCCTTCAGGAAAAACGGGGGCTATAAATAAGACCTATTTTCT
ACCACACACCAGTACAACTACTGCATTAACAAACGCTACGGATACAAAAGTCGAGTTTTACCCAGCCAGC
CGATATGGTTATCGCGGTAATAAATATGTCACTGACTTAAAATAA
# Upstream_100_bases:
ACATGGTCTGTCTTAATCAATCTCATCGCAAACAGTGCATAACATATATTAACAATATGTTTCTGCGTTA
TTTATCATTATTACAGGAGTTTTAATTTAA
# Blattner_No_Ontology:
Putative chaperones
# Gene_Position:
3360134-3360808 (Clockwise)
# Centisome_Position:
72.422
# Gene_Name:
yhcA
# GC_Content:
41.63%
# Metabolic_Importance:
Unknown
# Preceding_Gene:
gltF
# Following_Gene:
yhcD
# Operon_Status:
Yes
# Operon_Components:
yhcA_yhcD_yhcE Ref: RegulonDB http://kinich.cifn.unam.mx:8850/db/regulondb_cgi.query_simple?v_organism=ECK12&v_table=3&v_name=yhcA
# Paralogues:
b3143 (yraI) 25; b3047 (yqiH) 24; b0717 (ybgP) 25; b0944 (ycbF) 21;
# Copy Number:
Unknown
# RNA_Copy_No.:
Log phase (2max): 0.06
Stationary phase (2max): 0.15
Ref: Nature Biotech., 18, 1262-68, Dec. 2000 (PMID=11101804)
# Genbank_ID_(DNA):
G1789609
# Genbank_ID_(Protein):
AAC76247.1
# SWISS_PROT_(AC_&_ID):
$ YHCA_ECOLI (P28722)
# 2D_Gel_Image:
Not Available
# Other_Databases:
- ECOCYC: EG11515
- EcoGene: EG11515
- EMBL: M74162
- InterPro: IPR008962; IPR001829
- Pfam: PF02753; PF00345
- PIR: A65113
- PRINTS: PR00969
- PROSITE: PS00635
# Pfam_Domain/Function:
PF02753 Gram-negative pili assembly chaperone, C-terminal domain; PF00345 Gram-negative pili assembly chaperone, N-terminal domain;
# Homologues:
Not Available
# Similarity:
Belongs to the periplasmic pilus chaperone family. Contains 1 Ig-like (immunoglobulin-like) domain.
# EC_Number:
Not Available
# No._of_Amino_Acids:
224 (Translated Protein)
205 (Mature Protein)
# Molecular_Weight:
25339 23160
# Theoretical_pI:
9.51
# Theoretical_pI (Mature):
9.23
# Sequence:
// MLRHITFTVFITTSMNTLATGMVPETSVLLVDEKRGEASINIKNTDDHPSLLYTTIVDLP
// ESNKSIRLIPTQPVIRVEAGQVQQVRFLLQATVPLQSEELKRVTFEGIPPKDDKSSRVTV
// SIRQDLPVLIHPASLPEERETWKFLEWRKNGDQIEISNPSNYVVRMTLQFKTLPSGKTGA
// INKTYFLPHTSTTTALTNATDTKVEFYPASRYGYRGNKYVTDLK
// /\
// TGMVPETSVLLVDEKRGEASINIKNTDDHPSLLYTTIVDLPESNKSIRLIPTQPVIRVEA
// GQVQQVRFLLQATVPLQSEELKRVTFEGIPPKDDKSSRVTVSIRQDLPVLIHPASLPEER
// ETWKFLEWRKNGDQIEISNPSNYVVRMTLQFKTLPSGKTGAINKTYFLPHTSTTTALTNA
// TDTKVEFYPASRYGYRGNKYVTDLK
# PROSITE_Motif:
PILI_CHAPERONE; PATTERN. PS00635; Gram-negative pili assembly chaperone signature. [LIVMFY]-[APN]-x-[DNS]-[KREQ]-E-[STR]-[LIVMAR]-x-[FYWT]-x-[NC]-[LIVM]- PA x(2)-[LIVM]-P-[PAS]. PDOC00552; //
# Important_Sites:
Signal Chain 1 ?
# Transmembrane:
Not Available
# Cys/Met_Content:
0.0 %Cys (Translated Protein)
1.8 %Met (Translated Protein)
1.8 %Cys+Met (Translated Protein)
0.0 %Cys (Mature Protein)
1.0 %Met (Mature Protein)
1.0 %Cys+Met (Mature Protein)
# Secondary_Structure:
>YHCA_ECOLI (Translated Protein)
MLRHITFTVFITTSMNTLATGMVPETSVLLVDEKRGEASINIKNTDDHPSLLYTTIVDLP
CHHHHHHHHHHHHHHHHHHHCCCCCCCEEEECCCCCEEEEEEEECCCCCEEEEEEEECCC
ESNKSIRLIPTQPVIRVEAGQVQQVRFLLQATVPLQSEELKRVTFEGIPPKDDKSSRVTV
CCCCCCCEEECCCEEEECCCCCCEEEEEECCCCCCCCCEEEEEEEEECCCCCCCCCEEEE
SIRQDLPVLIHPASLPEERETWKFLEWRKNGDQIEISNPSNYVVRMTLQFKTLPSGKTGA
EEEECCEEEEECCCCCCHHCCCCEEEEEECCCEEEEECCCCEEEEEEEEEEECCCCCCCC
INKTYFLPHTSTTTALTNATDTKVEFYPASRYGYRGNKYVTDLK
CCCEEECCCCCEEEEECCCCCCEEEEEEEECCCCCCCCCCCCCC
/\
>YHCA_ECOLI (Mature Protein)
MLRHITFTVFITTSMNTLATGMVPETSVLLVDEKRGEASINIKNTDDHPSLLYTTIVDLP
CHHHHHHHHHHHHHHHHHHHCCCCCCCEEEECCCCCEEEEEEEECCCCCEEEEEEEECCC
ESNKSIRLIPTQPVIRVEAGQVQQVRFLLQATVPLQSEELKRVTFEGIPPKDDKSSRVTV
CCCCCCCEEECCCEEEECCCCCCEEEEEECCCCCCCCCEEEEEEEEECCCCCCCCCEEEE
SIRQDLPVLIHPASLPEERETWKFLEWRKNGDQIEISNPSNYVVRMTLQFKTLPSGKTGA
EEEECCEEEEECCCCCCHHCCCCEEEEEECCCEEEEECCCCEEEEEEEEEEECCCCCCCC
INKTYFLPHTSTTTALTNATDTKVEFYPASRYGYRGNKYVTDLK
CCCEEECCCCCEEEEECCCCCCEEEEEEEECCCCCCCCCCCCCC
# PDB_Accession:
& Not Available
# Resolution:
Not Available
# Structure_CLASS:
Mainly Beta
# Quaternary_Structure:
Not Available
# Interacting_Partners:
Not Available
# Cofactors:
Not Available
# Metals_Ions:
Not Available
# Kcat_Value_[1/min]:
Not Available
# Specific_Activity_[micromol/min/mg]:
Not Available
# Km_Value_[mM]:
Not Available
# Substrates:
Not Available
# Products:
Not Available
# Specific_Reaction:
Not Available
# General_Reaction:
Not Available
# Inhibitor:
Not Available
# Priority:
7.8
# Status:
Not Available
# Availability:
Not Available
#END_ECARDFILE
#BEGIN_ECARDFILE
# Entry_ID:
CC4021A.1
# Accession_No.:
UA0004021
# Name:
Outer membrane lipoprotein Rz1 from lambdoid prophage DLP12 precursor
# Alternate_Names:
Not Available
# General_Function:
Not Available
# COG_Function:
Not Available
# COG_ID:
Not Available
# Specific_Function:
Involvement in host cell lysis. Promotes membrane fusion. The local destruction of the membrane is accompanied by leakage of the cell contents (By similarity).
# Riley_Gene_Function:
DLP12 prophage; bacteriophage lambda endopeptidase homolog; predicted lipoprotein
# Riley_Cell_Function:
>>>
extrachromosomal
Prophage genes and phage related functions
# Gene_Ontology:
>>>
Function: Not Available
||
>>>
Process: physiological process
Process: cellular physiological process
Process: cell organization and biogenesis
Process: membrane organization and biogenesis
Process: membrane fusion
Process: viral envelope fusion with host membrane
||
>>>
Process: cellular process
Process: cellular physiological process
Process: cell organization and biogenesis
Process: membrane organization and biogenesis
Process: membrane fusion
Process: viral envelope fusion with host membrane
||
>>>
Process: viral life cycle
Process: viral infectious cycle
Process: initiation of viral infection
Process: entry of virus into host cell
Process: virion penetration into host cell
Process: viral envelope fusion with host membrane
||
>>>
Process: interaction between organisms
Process: interspecies interaction between organisms
Process: symbiosis, encompassing mutualism through parasitism
Process: interaction with host
Process: entry into host
Process: entry into host cell
Process: entry of virus into host cell
Process: virion penetration into host cell
Process: viral envelope fusion with host membrane
||
>>>
Process: entry into other organism during symbiotic interaction
Process: entry into host
Process: entry into host cell
Process: entry of virus into host cell
Process: virion penetration into host cell
Process: viral envelope fusion with host membrane
||
>>>
Process: entry into cell of other organism during symbiotic interaction
Process: entry into host cell
Process: entry of virus into host cell
Process: virion penetration into host cell
Process: viral envelope fusion with host membrane
||
>>>
Component: cell
Component: membrane
Component: outer membrane
# Location:
Attached to the outer membrane by a lipid anchor (By similarity)
# Blattner_Number:
b0556.1
# Gene_Sequence:
ATGCGAAAGCTGAAAATGATGCTCTGCGTGATGATGTTGCCGCTGGTCGTCGTCGGTTGCACATCAAAGC
AGTCTGTCAGTCAGTGCGTGAAGCCACCACGGCCTCCGGCGTGGATAATGCAGCCTCCCCCCGACTGGCA
GACACCGCTGAACGGGATTATTTCACCCTCAGAGAGAGGCTGA
# Upstream_100_bases:
GCCAGAGAACTGAAGCTAGCGAACGCGGCAATTACTGACATGCAGATGCGTCAGCGTGATGTTGCTGCGC
TCGATGCAAAATACACGAAGGAGTTAGCTG
# Blattner_No_Ontology:
Hypothetical, unclassified, unknown
# Gene_Position:
577550-577732 (Clockwise)
# Centisome_Position:
12.448
# Gene_Name:
rzoD
# GC_Content:
56.83%
# Metabolic_Importance:
Not Available
# Preceding_Gene:
rzpD
# Following_Gene:
borD
# Operon_Status:
No
# Operon_Components:
None
# Paralogues:
b1362.1 (rzoR) 98;
# Copy Number:
Not Available
# RNA_Copy_No.:
Not Available
# Genbank_ID_(DNA):
AE000161
# Genbank_ID_(Protein):
Not Annotated CDS
# SWISS_PROT_(AC_&_ID):
$ RZOD_ECOLI (P58041)
# 2D_Gel_Image:
Not Available
# Other_Databases:
- ECOCYC: EG14380
- EcoGene: EG14380
- EMBL: U00096
- InterPro: IPR010346
- Pfam: PF06085
- PROSITE: PS00013
# Pfam_Domain/Function:
PF06085 Lipoprotein Rz1 precursor;
# Homologues:
Not Available
# Similarity:
Not Available
# EC_Number:
Not Available
# No._of_Amino_Acids:
60 (Translated Protein)
41 (Mature Protein)
# Molecular_Weight:
6690 4515
# Theoretical_pI:
10.35
# Theoretical_pI (Mature):
8.82
# Sequence:
// MRKLKMMLCVMMLPLVVVGCTSKQSVSQCVKPPRPPAWIMQPPPDWQTPLNGIISPSERG
// /\
// CTSKQSVSQCVKPPRPPAWIMQPPPDWQTPLNGIISPSERG
# PROSITE_Motif:
PROKAR_LIPOPROTEIN; RULE. PS00013; Prokaryotic membrane lipoprotein lipid attachment site. {DERK}(6)-[LIVMFWSTAG](2)-[LIVMFYSTAGCQ]-[AGS]-C. Additional rules:RU (1) The sequence must start with Met.RU (2) The cysteine must be between positions 15 and 35 of the sequence inRU consideration.RU (3) There must be at least one charged residue (Lys or Arg) in the firstRU seven residues of the sequence. PDOC00013; //
# Important_Sites:
Not Available
# Transmembrane:
Not Available
# Cys/Met_Content:
5.0 %Cys (Translated Protein)
10.0 %Met (Translated Protein)
15.0 %Cys+Met (Translated Protein)
4.9 %Cys (Mature Protein)
2.4 %Met (Mature Protein)
7.3 %Cys+Met (Mature Protein)
# Secondary_Structure:
>RZOD_ECOLI (Translated Protein)
MRKLKMMLCVMMLPLVVVGCTSKQSVSQCVKPPRPPAWIMQPPPDWQTPLNGIISPSERG
CCCHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCEEECCCCCHHHHHHHHCCCCCCC
/\
>RZOD_ECOLI (Mature Protein)
RKLKMMLCVMMLPLVVVGCTSKQSVSQCVKPPRPPAWIMQPPPDWQTPLNGIISPSERG
CCCCEEHHEEECCHHHCCCCCCCCCCCCCCCCCCCCEEECCCCCHHHHHHHHCCCCCCC
# PDB_Accession:
& Not Available
# Resolution:
Not Available
# Structure_CLASS:
Mainly Alpha
# Quaternary_Structure:
Not Available
# Interacting_Partners:
Not Available
# Cofactors:
Not Available
# Metals_Ions:
Not Available
# Kcat_Value_[1/min]:
Not Available
# Specific_Activity_[micromol/min/mg]:
Not Available
# Km_Value_[mM]:
Not Available
# Substrates:
Not Available
# Products:
Not Available
# Specific_Reaction:
Not Available
# General_Reaction:
Not Available
# Inhibitor:
Not Available
# Priority:
4
# Status:
Selected
# Availability:
Northeast Structural Genomics Consortium
#END_ECARDFILE
#BEGIN_ECARDFILE
# Entry_ID:
CC0199A.1
# Accession_No.:
UA0000199
# Name:
Arabinose operon regulatory protein
# Alternate_Names:
Not Available
# General_Function:
Regulatory functions; Member of AraC/XylS; Homeodomain-like; Regulatory protein AraC
# COG_Function:
Transcription (code K)
# COG_ID:
COG2207 AraC-type DNA-binding domain-containing proteins (Evalue = 1e-174)
# Specific_Function:
This protein controls the expression of at least six genes that are involved in the transport and catabolism of L- arabinose. It regulates initiation of transcription of the araBAD operon and it also controls its own synthesis. The L-arabinose operon displays both positive and negative regulation through araC.
# Riley_Gene_Function:
transcriptional regulator of arabinose catabolism (AraC/XylS family); DNA-binding transcriptional dual regulator
# Riley_Cell_Function:
>>>
Metabolism
Carbon compound utilization
Carbohydrates/Carbon compounds
||
>>>
Information transfer
RNA related
Transcription related
||
>>>
Regulation
Type of regulation
Transcriptional level
Activator
||
>>>
Regulation
Type of regulation
Transcriptional level
Repressor
||
>>>
Regulation
Genetic unit regulated
Operon (regulation of one operon)
||
>>>
Location of gene products
Cytoplasm
# Gene_Ontology:
>>>
Function: binding
Function: nucleic acid binding
Function: DNA binding
||
>>>
Function: binding
Function: nucleic acid binding
Function: DNA binding
Function: transcription factor activity
||
>>>
Function: transcription regulator activity
Function: transcription factor activity
||
>>>
Process: physiological process
Process: metabolism
Process: regulation of metabolism
Process: regulation of cellular metabolism
Process: regulation of nucleobase, nucleoside, nucleotide and nucleic acid metabolism
Process: regulation of transcription
Process: regulation of transcription, DNA-dependent
||
>>>
Process: cellular metabolism
Process: nucleobase, nucleoside, nucleotide and nucleic acid metabolism
Process: transcription
Process: transcription, DNA-dependent
Process: regulation of transcription, DNA-dependent
||
>>>
Process: regulation of transcription
Process: regulation of transcription, DNA-dependent
||
>>>
Process: regulation of nucleobase, nucleoside, nucleotide and nucleic acid metabolism
Process: regulation of transcription
Process: regulation of transcription, DNA-dependent
||
>>>
Process: regulation of cellular metabolism
Process: regulation of nucleobase, nucleoside, nucleotide and nucleic acid metabolism
Process: regulation of transcription
Process: regulation of transcription, DNA-dependent
||
>>>
Process: primary metabolism
Process: nucleobase, nucleoside, nucleotide and nucleic acid metabolism
Process: transcription
Process: transcription, DNA-dependent
Process: regulation of transcription, DNA-dependent
||
>>>
Process: regulation of transcription
Process: regulation of transcription, DNA-dependent
||
>>>
Process: regulation of nucleobase, nucleoside, nucleotide and nucleic acid metabolism
Process: regulation of transcription
Process: regulation of transcription, DNA-dependent
||
>>>
Process: regulation of physiological process
Process: regulation of metabolism
Process: regulation of cellular metabolism
Process: regulation of nucleobase, nucleoside, nucleotide and nucleic acid metabolism
Process: regulation of transcription
Process: regulation of transcription, DNA-dependent
||
>>>
Process: regulation of cellular physiological process
Process: regulation of cellular metabolism
Process: regulation of nucleobase, nucleoside, nucleotide and nucleic acid metabolism
Process: regulation of transcription
Process: regulation of transcription, DNA-dependent
||
>>>
Process: cellular physiological process
Process: cellular metabolism
Process: nucleobase, nucleoside, nucleotide and nucleic acid metabolism
Process: transcription
Process: transcription, DNA-dependent
Process: regulation of transcription, DNA-dependent
||
>>>
Process: regulation of transcription
Process: regulation of transcription, DNA-dependent
||
>>>
Process: regulation of nucleobase, nucleoside, nucleotide and nucleic acid metabolism
Process: regulation of transcription
Process: regulation of transcription, DNA-dependent
||
>>>
Process: regulation of cellular metabolism
Process: regulation of nucleobase, nucleoside, nucleotide and nucleic acid metabolism
Process: regulation of transcription
Process: regulation of transcription, DNA-dependent
||
>>>
Process: regulation of cellular physiological process
Process: regulation of cellular metabolism
Process: regulation of nucleobase, nucleoside, nucleotide and nucleic acid metabolism
Process: regulation of transcription
Process: regulation of transcription, DNA-dependent
||
>>>
Process: cellular process
Process: regulation of cellular process
Process: regulation of cellular physiological process
Process: regulation of cellular metabolism
Process: regulation of nucleobase, nucleoside, nucleotide and nucleic acid metabolism
Process: regulation of transcription
Process: regulation of transcription, DNA-dependent
||
>>>
Process: cellular physiological process
Process: cellular metabolism
Process: nucleobase, nucleoside, nucleotide and nucleic acid metabolism
Process: transcription
Process: transcription, DNA-dependent
Process: regulation of transcription, DNA-dependent
||
>>>
Process: regulation of transcription
Process: regulation of transcription, DNA-dependent
||
>>>
Process: regulation of nucleobase, nucleoside, nucleotide and nucleic acid metabolism
Process: regulation of transcription
Process: regulation of transcription, DNA-dependent
||
>>>
Process: regulation of cellular metabolism
Process: regulation of nucleobase, nucleoside, nucleotide and nucleic acid metabolism
Process: regulation of transcription
Process: regulation of transcription, DNA-dependent
||
>>>
Process: regulation of cellular physiological process
Process: regulation of cellular metabolism
Process: regulation of nucleobase, nucleoside, nucleotide and nucleic acid metabolism
Process: regulation of transcription
Process: regulation of transcription, DNA-dependent
||
>>>
Process: regulation of biological process
Process: regulation of physiological process
Process: regulation of metabolism
Process: regulation of cellular metabolism
Process: regulation of nucleobase, nucleoside, nucleotide and nucleic acid metabolism
Process: regulation of transcription
Process: regulation of transcription, DNA-dependent
||
>>>
Process: regulation of cellular physiological process
Process: regulation of cellular metabolism
Process: regulation of nucleobase, nucleoside, nucleotide and nucleic acid metabolism
Process: regulation of transcription
Process: regulation of transcription, DNA-dependent
||
>>>
Process: regulation of cellular process
Process: regulation of cellular physiological process
Process: regulation of cellular metabolism
Process: regulation of nucleobase, nucleoside, nucleotide and nucleic acid metabolism
Process: regulation of transcription
Process: regulation of transcription, DNA-dependent
Process: physiological process
Process: metabolism
Process: regulation of metabolism
Process: regulation of cellular metabolism
Process: regulation of nucleobase, nucleoside, nucleotide and nucleic acid metabolism
Process: regulation of transcription
||
>>>
Process: cellular metabolism
Process: nucleobase, nucleoside, nucleotide and nucleic acid metabolism
Process: transcription
Process: regulation of transcription
||
>>>
Process: regulation of nucleobase, nucleoside, nucleotide and nucleic acid metabolism
Process: regulation of transcription
||
>>>
Process: regulation of cellular metabolism
Process: regulation of nucleobase, nucleoside, nucleotide and nucleic acid metabolism
Process: regulation of transcription
||
>>>
Process: primary metabolism
Process: nucleobase, nucleoside, nucleotide and nucleic acid metabolism
Process: transcription
Process: regulation of transcription
||
>>>
Process: regulation of nucleobase, nucleoside, nucleotide and nucleic acid metabolism
Process: regulation of transcription
||
>>>
Process: regulation of physiological process
Process: regulation of metabolism
Process: regulation of cellular metabolism
Process: regulation of nucleobase, nucleoside, nucleotide and nucleic acid metabolism
Process: regulation of transcription
||
>>>
Process: regulation of cellular physiological process
Process: regulation of cellular metabolism
Process: regulation of nucleobase, nucleoside, nucleotide and nucleic acid metabolism
Process: regulation of transcription
||
>>>
Process: cellular physiological process
Process: cellular metabolism
Process: nucleobase, nucleoside, nucleotide and nucleic acid metabolism
Process: transcription
Process: regulation of transcription
||
>>>
Process: regulation of nucleobase, nucleoside, nucleotide and nucleic acid metabolism
Process: regulation of transcription
||
>>>
Process: regulation of cellular metabolism
Process: regulation of nucleobase, nucleoside, nucleotide and nucleic acid metabolism
Process: regulation of transcription
||
>>>
Process: regulation of cellular physiological process
Process: regulation of cellular metabolism
Process: regulation of nucleobase, nucleoside, nucleotide and nucleic acid metabolism
Process: regulation of transcription
||
>>>
Process: cellular process
Process: regulation of cellular process
Process: regulation of cellular physiological process
Process: regulation of cellular metabolism
Process: regulation of nucleobase, nucleoside, nucleotide and nucleic acid metabolism
Process: regulation of transcription
||
>>>
Process: cellular physiological process
Process: cellular metabolism
Process: nucleobase, nucleoside, nucleotide and nucleic acid metabolism
Process: transcription
Process: regulation of transcription
||
>>>
Process: regulation of nucleobase, nucleoside, nucleotide and nucleic acid metabolism
Process: regulation of transcription
||
>>>
Process: regulation of cellular metabolism
Process: regulation of nucleobase, nucleoside, nucleotide and nucleic acid metabolism
Process: regulation of transcription
||
>>>
Process: regulation of cellular physiological process
Process: regulation of cellular metabolism
Process: regulation of nucleobase, nucleoside, nucleotide and nucleic acid metabolism
Process: regulation of transcription
||
>>>
Process: regulation of biological process
Process: regulation of physiological process
Process: regulation of metabolism
Process: regulation of cellular metabolism
Process: regulation of nucleobase, nucleoside, nucleotide and nucleic acid metabolism
Process: regulation of transcription
||
>>>
Process: regulation of cellular physiological process
Process: regulation of cellular metabolism
Process: regulation of nucleobase, nucleoside, nucleotide and nucleic acid metabolism
Process: regulation of transcription
||
>>>
Process: regulation of cellular process
Process: regulation of cellular physiological process
Process: regulation of cellular metabolism
Process: regulation of nucleobase, nucleoside, nucleotide and nucleic acid metabolism
Process: regulation of transcription
Process: physiological process
Process: metabolism
Process: regulation of metabolism
Process: regulation of cellular metabolism
Process: regulation of nucleobase, nucleoside, nucleotide and nucleic acid metabolism
Process: regulation of transcription
Process: regulation of transcription, DNA-dependent
||
>>>
Process: cellular metabolism
Process: nucleobase, nucleoside, nucleotide and nucleic acid metabolism
Process: transcription
Process: transcription, DNA-dependent
Process: regulation of transcription, DNA-dependent
||
>>>
Process: regulation of transcription
Process: regulation of transcription, DNA-dependent
||
>>>
Process: regulation of nucleobase, nucleoside, nucleotide and nucleic acid metabolism
Process: regulation of transcription
Process: regulation of transcription, DNA-dependent
||
>>>
Process: regulation of cellular metabolism
Process: regulation of nucleobase, nucleoside, nucleotide and nucleic acid metabolism
Process: regulation of transcription
Process: regulation of transcription, DNA-dependent
||
>>>
Process: primary metabolism
Process: nucleobase, nucleoside, nucleotide and nucleic acid metabolism
Process: transcription
Process: transcription, DNA-dependent
Process: regulation of transcription, DNA-dependent
||
>>>
Process: regulation of transcription
Process: regulation of transcription, DNA-dependent
||
>>>
Process: regulation of nucleobase, nucleoside, nucleotide and nucleic acid metabolism
Process: regulation of transcription
Process: regulation of transcription, DNA-dependent
||
>>>
Process: regulation of physiological process
Process: regulation of metabolism
Process: regulation of cellular metabolism
Process: regulation of nucleobase, nucleoside, nucleotide and nucleic acid metabolism
Process: regulation of transcription
Process: regulation of transcription, DNA-dependent
||
>>>
Process: regulation of cellular physiological process
Process: regulation of cellular metabolism
Process: regulation of nucleobase, nucleoside, nucleotide and nucleic acid metabolism
Process: regulation of transcription
Process: regulation of transcription, DNA-dependent
||
>>>
Process: cellular physiological process
Process: cellular metabolism
Process: nucleobase, nucleoside, nucleotide and nucleic acid metabolism
Process: transcription
Process: transcription, DNA-dependent
Process: regulation of transcription, DNA-dependent
||
>>>
Process: regulation of transcription
Process: regulation of transcription, DNA-dependent
||
>>>
Process: regulation of nucleobase, nucleoside, nucleotide and nucleic acid metabolism
Process: regulation of transcription
Process: regulation of transcription, DNA-dependent
||
>>>
Process: regulation of cellular metabolism
Process: regulation of nucleobase, nucleoside, nucleotide and nucleic acid metabolism
Process: regulation of transcription
Process: regulation of transcription, DNA-dependent
||
>>>
Process: regulation of cellular physiological process
Process: regulation of cellular metabolism
Process: regulation of nucleobase, nucleoside, nucleotide and nucleic acid metabolism
Process: regulation of transcription
Process: regulation of transcription, DNA-dependent
||
>>>
Process: cellular process
Process: regulation of cellular process
Process: regulation of cellular physiological process
Process: regulation of cellular metabolism
Process: regulation of nucleobase, nucleoside, nucleotide and nucleic acid metabolism
Process: regulation of transcription
Process: regulation of transcription, DNA-dependent
||
>>>
Process: cellular physiological process
Process: cellular metabolism
Process: nucleobase, nucleoside, nucleotide and nucleic acid metabolism
Process: transcription
Process: transcription, DNA-dependent
Process: regulation of transcription, DNA-dependent
||
>>>
Process: regulation of transcription
Process: regulation of transcription, DNA-dependent
||
>>>
Process: regulation of nucleobase, nucleoside, nucleotide and nucleic acid metabolism
Process: regulation of transcription
Process: regulation of transcription, DNA-dependent
||
>>>
Process: regulation of cellular metabolism
Process: regulation of nucleobase, nucleoside, nucleotide and nucleic acid metabolism
Process: regulation of transcription
Process: regulation of transcription, DNA-dependent
||
>>>
Process: regulation of cellular physiological process
Process: regulation of cellular metabolism
Process: regulation of nucleobase, nucleoside, nucleotide and nucleic acid metabolism
Process: regulation of transcription
Process: regulation of transcription, DNA-dependent
||
>>>
Process: regulation of biological process
Process: regulation of physiological process
Process: regulation of metabolism
Process: regulation of cellular metabolism
Process: regulation of nucleobase, nucleoside, nucleotide and nucleic acid metabolism
Process: regulation of transcription
Process: regulation of transcription, DNA-dependent
||
>>>
Process: regulation of cellular physiological process
Process: regulation of cellular metabolism
Process: regulation of nucleobase, nucleoside, nucleotide and nucleic acid metabolism
Process: regulation of transcription
Process: regulation of transcription, DNA-dependent
||
>>>
Process: regulation of cellular process
Process: regulation of cellular physiological process
Process: regulation of cellular metabolism
Process: regulation of nucleobase, nucleoside, nucleotide and nucleic acid metabolism
Process: regulation of transcription
Process: regulation of transcription, DNA-dependent
||
>>>
Component: cell
Component: intracellular
# Location:
Cytoplasm
# Blattner_Number:
b0064
# Gene_Sequence:
ATGGCTGAAGCGCAAAATGATCCCCTGCTGCCGGGATACTCGTTTAACGCCCATCTGGTGGCGGGTTTAA
CGCCGATTGAGGCCAACGGTTATCTCGATTTTTTTATCGACCGACCGCTGGGAATGAAAGGTTATATTCT
CAATCTCACCATTCGCGGTCAGGGGGTGGTGAAAAATCAGGGACGAGAATTTGTCTGCCGACCGGGTGAT
ATTTTGCTGTTCCCGCCAGGAGAGATTCATCACTACGGTCGTCATCCGGAGGCTCGCGAATGGTATCACC
AGTGGGTTTACTTTCGTCCGCGCGCCTACTGGCATGAATGGCTTAACTGGCCGTCAATATTTGCCAATAC
GGGTTTCTTTCGCCCGGATGAAGCGCACCAGCCGCATTTCAGCGACCTGTTTGGGCAAATCATTAACGCC
GGGCAAGGGGAAGGGCGCTATTCGGAGCTGCTGGCGATAAATCTGCTTGAGCAATTGTTACTGCGGCGCA
TGGAAGCGATTAACGAGTCGCTCCATCCACCGATGGATAATCGGGTACGCGAGGCTTGTCAGTACATCAG
CGATCACCTGGCAGACAGCAATTTTGATATCGCCAGCGTCGCACAGCATGTTTGCTTGTCGCCGTCGCGT
CTGTCACATCTTTTCCGCCAGCAGTTAGGGATTAGCGTCTTAAGCTGGCGCGAGGACCAACGCATTAGTC
AGGCGAAGCTGCTTTTGAGCACTACCCGGATGCCTATCGCCACCGTCGGTCGCAATGTTGGTTTTGACGA
TCAACTCTATTTCTCGCGAGTATTTAAAAAATGCACCGGGGCCAGCCCGAGCGAGTTTCGTGCCGGTTGT
GAAGAAAAAGTGAATGATGTAGCCGTCAAGTTGTCATAA
# Upstream_100_bases:
TTGGGTTAGCGAGAAGAGCCAGTAAAAGACGCAGTGACGGCAATGTCTGATGCAATATGGACAATTGGTT
TCTTCTCTGAATGGTGGGAGTATGAAAAGT
# Blattner_No_Ontology:
Carbon compound catabolism
# Gene_Position:
70387-71265 (Clockwise)
# Centisome_Position:
1.517
# Gene_Name:
araC
# GC_Content:
52.56%
# Metabolic_Importance:
Non_Essential
# Preceding_Gene:
araB
# Following_Gene:
yabI
# Operon_Status:
No
# Operon_Components:
None
# Paralogues:
None
# Copy Number:
Not Available
# RNA_Copy_No.:
Log phase (2max): 2.52
Stationary phase (2max): 0.1
Ref: Nature Biotech., 18, 1262-68, Dec. 2000 (PMID=11101804)
# Genbank_ID_(DNA):
G1786251
# Genbank_ID_(Protein):
AAC73175.1
# SWISS_PROT_(AC_&_ID):
$ ARAC_ECOLI (P0A9E0)
# 2D_Gel_Image:
Not Available
# Other_Databases:
- ECO2DBASE: H030.2
- ECOCYC: EG10054
- EcoGene: EG10054
- EMBL: V00256
- InterPro: IPR003313; IPR012287; IPR009057; IPR000005
- Pfam: PF02311; PF00165
- PIR: A91473
- PRINTS: PR00032
- PROSITE: PS00041
# Pfam_Domain/Function:
PF02311 AraC-like ligand binding domain; PF00165 Bacterial regulatory helix-turn-helix proteins, AraC family;
# Homologues:
Not Available
# Similarity:
Contains 1 HTH araC/xylS-type DNA-binding domain.
# EC_Number:
Not Available
# No._of_Amino_Acids:
292 (Translated Protein)
291 (Mature Protein)
# Molecular_Weight:
33384 33253
# Theoretical_pI:
6.95
# Theoretical_pI (Mature):
6.95
# Sequence:
// MAEAQNDPLLPGYSFNAHLVAGLTPIEANGYLDFFIDRPLGMKGYILNLTIRGQGVVKNQ
// GREFVCRPGDILLFPPGEIHHYGRHPEAREWYHQWVYFRPRAYWHEWLNWPSIFANTGFF
// RPDEAHQPHFSDLFGQIINAGQGEGRYSELLAINLLEQLLLRRMEAINESLHPPMDNRVR
// EACQYISDHLADSNFDIASVAQHVCLSPSRLSHLFRQQLGISVLSWREDQRISQAKLLLS
// TTRMPIATVGRNVGFDDQLYFSRVFKKCTGASPSEFRAGCEEKVNDVAVKLS
// /\
// AEAQNDPLLPGYSFNAHLVAGLTPIEANGYLDFFIDRPLGMKGYILNLTIRGQGVVKNQG
// REFVCRPGDILLFPPGEIHHYGRHPEAREWYHQWVYFRPRAYWHEWLNWPSIFANTGFFR
// PDEAHQPHFSDLFGQIINAGQGEGRYSELLAINLLEQLLLRRMEAINESLHPPMDNRVRE
// ACQYISDHLADSNFDIASVAQHVCLSPSRLSHLFRQQLGISVLSWREDQRISQAKLLLST
// TRMPIATVGRNVGFDDQLYFSRVFKKCTGASPSEFRAGCEEKVNDVAVKLS
# PROSITE_Motif:
HTH_ARAC_FAMILY_1; PATTERN. PS00041; Bacterial regulatory proteins, araC family signature. [KRQ]-[LIVMA]-x(2)-[GSTALIV]-{FYWPGDN}-x(2)-[LIVMSA]-x(4,9)-[LIVMF]-PA x(2)-[LIVMSTA]-[GSTACIL]-x(3)-[GANQRF]-[LIVMFY]-x(4,5)-[LFY]-x(3)-PA [FYIVA]-{FYWHCM}-x(3)-[GSADENQKR]-x-[NSTAPKL]-[PARL]. PDOC00040; //
# Important_Sites:
Not Available
# Transmembrane:
Not Available
# Cys/Met_Content:
1.7 %Cys (Translated Protein)
1.7 %Met (Translated Protein)
3.4 %Cys+Met (Translated Protein)
1.7 %Cys (Mature Protein)
1.4 %Met (Mature Protein)
3.1 %Cys+Met (Mature Protein)
# Secondary_Structure_(PDB):
DPLLPGYSFNAHLVAGLTPIEANGYLDFFIDRPLGMKGYILNLTIRGQGVV
CCCCCCCCCCCCEEEEEEEEECCCCCCCEEEECCCCCEEEEEEEEECEEEE
KNQGREFVCRPGDILLFPPGEIHHYGRHPEAREWYHQWVYFRPRAYWHEWL
ECCCEEEEEECCEEEEEECCEEEEEEEECCCEEEEEEEEEEECCCCCCCCC
NWPSIFANTGFFRPDEAHQPHFSDLFGQIINAGQGEGRYSELLAINLLEQL
CEEECCCCEEEEECHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHH
LLRRMEAI
HHHHHHHC
# PDB_Accession:
& 2ARC
# Resolution:
1.5 Angstroms
# Structure_CLASS:
Alpha Beta
# Quaternary_Structure:
homodimeric A2 complex of araC
# Interacting_Partners:
1) araC, 2) DNA,
# Cofactors:
Not Available
# Metals_Ions:
Not Available
# Kcat_Value_[1/min]:
Not Available
# Specific_Activity_[micromol/min/mg]:
Not Available
# Km_Value_[mM]:
Not Available
# Substrates:
DNA
# Products:
Not Available
# Specific_Reaction:
Protein + DNA = Protein-DNA
# General_Reaction:
Not Available
# Inhibitor:
Not Available
# Priority:
0.0
# Status:
Completed
# Availability:
Completed
#END_ECARDFILE
#BEGIN_ECARDFILE
# Entry_ID:
CC2464A.1
# Accession_No.:
UA0002464
# Name:
Prophage P4 integrase
# Alternate_Names:
IntP4
# General_Function:
Replication; DNA breaking-rejoining enzymes
# COG_Function:
Replication, recombination and repair (code L)
# COG_ID:
COG0582 Integrase (Evalue = 0.0)
# Specific_Function:
Not Available
# Riley_Gene_Function:
KpLE2 phage-like element; P4-like integrase
# Riley_Cell_Function:
>>>
extrachromosomal
Prophage genes and phage related functions
# Gene_Ontology:
>>>
Function: binding
Function: nucleic acid binding
Function: DNA binding
||
>>>
Function: binding
Function: nucleic acid binding
Function: DNA binding
||
>>>
Process: physiological process
Process: metabolism
Process: macromolecule metabolism
Process: biopolymer metabolism
Process: DNA metabolism
Process: DNA recombination
||
>>>
Process: cellular metabolism
Process: nucleobase, nucleoside, nucleotide and nucleic acid metabolism
Process: DNA metabolism
Process: DNA recombination
||
>>>
Process: primary metabolism
Process: nucleobase, nucleoside, nucleotide and nucleic acid metabolism
Process: DNA metabolism
Process: DNA recombination
||
>>>
Process: cellular physiological process
Process: cellular metabolism
Process: nucleobase, nucleoside, nucleotide and nucleic acid metabolism
Process: DNA metabolism
Process: DNA recombination
||
>>>
Process: cellular process
Process: cellular physiological process
Process: cellular metabolism
Process: nucleobase, nucleoside, nucleotide and nucleic acid metabolism
Process: DNA metabolism
Process: DNA recombination
||
>>>
Component: Not Available
# Location:
Cytoplasm
# Blattner_Number:
b4271
# Gene_Sequence:
ATGCATCTGCTTGTCCATCCAAATGGTTCTAAGTACTGGCGTTTGCAGTACCGTTATGAGGGAAAGCAAA
AAATGCTGGCACTTGGGGTTTATCCTGAAATCACACTAGCGGATGCCAGAGTACGTCGTGACGAGGCGCG
TAAGCTGCTTGCGAATGGCGTCGATCCGGGAGACAAAAAGAAAAATGATAAGGTTGAACAGAGTAAAGCA
CGAACCTTTAAAGAAGTCGCGATTGAGTGGCATGGCACCAATAAAAAGTGGTCTGAAGATCACGCCCATC
GTGTGCTAAAAAGTCTTGAAGATAATCTTTTTGCAGCGCTTGGTGAACGTAATATCGCTGAGTTAAAAAC
TCGAGATTTATTAGCACCTATTAAGGCCGTAGAAATGTCTGGACGTCTTGAAGTGGCCGCTCGTCTTCAG
CAGCGCACTACAGCCATCATGCGCTATGCAGTGCAAAGTGGGTTAATTGATTATAACCCGGCACAAGAGA
TGGCTGGGGCGGTTGCTTCCTGTAATCGACAACATCGTCCCGCGCTTGAATTAAAGCGCATCCCTGAGTT
GCTTACAAAAATAGATAGCTATACTGGTAGGCCGCTAACCCGATGGGCGATAGAACTCACTTTGCTGATC
TTTATTCGGTCCAGTGAGCTGCGTTTTGCTCGTTGGTCAGAGATCGATTTCGAAGCGTCTATATGGACTA
TCCCACCGGAGCGGGAGCCTATTCCTGGAGTGAAACATTCCCATAGAGGCTCAAAAATGCGTACAACGCA
TCTAGTGCCTCTTTCAACGCAAGCTCTTGCAATTTTAAAGCAGATAAAACAGTTTTATGGGGCCCATGAC
TTGATATTTATTGGTGATCACGATTCGCACAAACCCATGAGTGAGAATACGGTAAATAGTGCGTTACGGG
TCATGGGGTATGATACAAAAGTAGAGGTTTGTGGTCATGGCTTTCGAACAATGGCCTGTAGTTCATTGGT
CGAATCAGGTCTGTGGTCTCGTGATGCTGTTGAACGTCAGATGAGCCACATGGCGCGAAATTCAGTGAGG
GCCGCGTATATCCATAAAGCAGAGCATCTGGAAGAACGGCGATTGATGCTACAGTGGTGGGCCGATTTTC
TGGATGTAAACAGAGAAAGGTTTATCAGTCCATTTGAATATGCAAAGATTAATAATCCATTAAAACAGTA
A
# Upstream_100_bases:
CTTGTACCAACAGGGAGGGAATACGATGGCATTAACAGATATCAAAGTCAGAGCAGCCAAGCCAACGGAT
AAGCAATATTAGCTGACTGATGGTGGCGGT
# Blattner_No_Ontology:
phage, transposon, or plasmid
# Gene_Position:
4494773-4495963 (Clockwise)
# Centisome_Position:
96.877
# Gene_Name:
intB
# GC_Content:
45.76%
# Metabolic_Importance:
Non_Essential
# Preceding_Gene:
yjgB
# Following_Gene:
yjgW
# Operon_Status:
No
# Operon_Components:
None
# Paralogues:
b2622 (intA) 35; b2442 (intZ) 34; b2349 (intS) 31;
# Copy Number:
Unknown
# RNA_Copy_No.:
Log phase (2max): 2.22
Stationary phase (2max): 0.38
Ref: Nature Biotech., 18, 1262-68, Dec. 2000 (PMID=11101804)
# Genbank_ID_(DNA):
G1790722
# Genbank_ID_(Protein):
AAC77227.1
# SWISS_PROT_(AC_&_ID):
$ INTB_ECOLI (P39347)
# 2D_Gel_Image:
Not Available
# Other_Databases:
- ECOCYC: EG12364
- EcoGene: EG12364
- EMBL: U14003
- InterPro: IPR011010; IPR002104
- Pfam: PF00589
- PIR: S56496
# Pfam_Domain/Function:
PF00589 Phage integrase family
# Homologues:
Not Available
# Similarity:
Belongs to the "phage" integrase family.
# EC_Number:
Not Available
# No._of_Amino_Acids:
396 (Translated Protein)
396 (Mature Protein)
# Molecular_Weight:
45583 45583
# Theoretical_pI:
10.04
# Theoretical_pI (Mature):
10.04
# Sequence:
// MHLLVHPNGSKYWRLQYRYEGKQKMLALGVYPEITLADARVRRDEARKLLANGVDPGDKK
// KNDKVEQSKARTFKEVAIEWHGTNKKWSEDHAHRVLKSLEDNLFAALGERNIAELKTRDL
// LAPIKAVEMSGRLEVAARLQQRTTAIMRYAVQSGLIDYNPAQEMAGAVASCNRQHRPALE
// LKRIPELLTKIDSYTGRPLTRWAIELTLLIFIRSSELRFARWSEIDFEASIWTIPPEREP
// IPGVKHSHRGSKMRTTHLVPLSTQALAILKQIKQFYGAHDLIFIGDHDSHKPMSENTVNS
// ALRVMGYDTKVEVCGHGFRTMACSSLVESGLWSRDAVERQMSHMARNSVRAAYIHKAEHL
// EERRLMLQWWADFLDVNRERFISPFEYAKINNPLKQ
// /\
// MHLLVHPNGSKYWRLQYRYEGKQKMLALGVYPEITLADARVRRDEARKLLANGVDPGDKK
// KNDKVEQSKARTFKEVAIEWHGTNKKWSEDHAHRVLKSLEDNLFAALGERNIAELKTRDL
// LAPIKAVEMSGRLEVAARLQQRTTAIMRYAVQSGLIDYNPAQEMAGAVASCNRQHRPALE
// LKRIPELLTKIDSYTGRPLTRWAIELTLLIFIRSSELRFARWSEIDFEASIWTIPPEREP
// IPGVKHSHRGSKMRTTHLVPLSTQALAILKQIKQFYGAHDLIFIGDHDSHKPMSENTVNS
// ALRVMGYDTKVEVCGHGFRTMACSSLVESGLWSRDAVERQMSHMARNSVRAAYIHKAEHL
// EERRLMLQWWADFLDVNRERFISPFEYAKINNPLKQ
# PROSITE_Motif:
EF_HAND; PATTERN. PS00018; EF-hand calcium-binding domain. D-x-[DNS]-{ILVFYW}-[DENSTG]-[DNQGHRK]-{GP}-[LIVMC]-[DENQSTAGC]-x(2)- PA [DE]-[LIVMFYW]. PDOC00018; //
# Important_Sites:
Active_Site 353 353 Transient Covalent Linkage
# Transmembrane:
Not Available
# Cys/Met_Content:
0.8 %Cys (Translated Protein)
3.0 %Met (Translated Protein)
3.8 %Cys+Met (Translated Protein)
0.8 %Cys (Mature Protein)
3.0 %Met (Mature Protein)
3.8 %Cys+Met (Mature Protein)
# Secondary_Structure:
>INTB_ECOLI (Translated Protein)
MHLLVHPNGSKYWRLQYRYEGKQKMLALGVYPEITLADARVRRDEARKLLANGVDPGDKK
CEEEECCCCCEEEEEEECCCCEEEEEECCCCCCCCHHHHHHHHHHHHHHHHCCCCHHHHH
KNDKVEQSKARTFKEVAIEWHGTNKKWSEDHAHRVLKSLEDNLFAALGERNIAELKTRDL
HHHHHHHHHCCCHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHCCCCCHHHCCHHHH
LAPIKAVEMSGRLEVAARLQQRTTAIMRYAVQSGLIDYNPAQEMAGAVASCNRQHRPALE
HHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHCCCCCCCCCCCCCCCCC
LKRIPELLTKIDSYTGRPLTRWAIELTLLIFIRSSELRFARWSEIDFEASIWTIPPEREP
HHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCCHHHHHHCCCCEEECCCCEEEECCCCCC
IPGVKHSHRGSKMRTTHLVPLSTQALAILKQIKQFYGAHDLIFIGDHDSHKPMSENTVNS
CCCCCCCCCCCCCCEEEEECCCHHHHHHHHHHHHHCCCCCEEECCCCCCCCCCCHHHHHH
ALRVMGYDTKVEVCGHGFRTMACSSLVESGLWSRDAVERQMSHMARNSVRAAYIHKAEHL
HHHHHHHCCCCCCCCCHHHHHHHHHHHHCCCCCHHHHHHHHCCCCHHHHHHHHHHHHHHH
EERRLMLQWWADFLDVNRERFISPFEYAKINNPLKQ
HHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCC
/\
>INTB_ECOLI (Mature Protein)
HLLVHPNGSKYWRLQYRYEGKQKMLALGVYPEITLADARVRRDEARKLLANGVDPGDKKK
EEEECCCCCEEEEEEECCCCEEEEEECCCCCCCCHHHHHHHHHHHHHHHHCCCCHHHHHH
NDKVEQSKARTFKEVAIEWHGTNKKWSEDHAHRVLKSLEDNLFAALGERNIAELKTRDLL
HHHHHHHHCCCHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHCCCCCHHHCCHHHHH
APIKAVEMSGRLEVAARLQQRTTAIMRYAVQSGLIDYNPAQEMAGAVASCNRQHRPALEL
HHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHCCCCCCCCCCCCCCCCCH
KRIPELLTKIDSYTGRPLTRWAIELTLLIFIRSSELRFARWSEIDFEASIWTIPPEREPI
HHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCCHHHHHHCCCCEEECCCCEEEECCCCCCC
PGVKHSHRGSKMRTTHLVPLSTQALAILKQIKQFYGAHDLIFIGDHDSHKPMSENTVNSA
CCCCCCCCCCCCCEEEEECCCHHHHHHHHHHHHHCCCCCEEECCCCCCCCCCCHHHHHHH
LRVMGYDTKVEVCGHGFRTMACSSLVESGLWSRDAVERQMSHMARNSVRAAYIHKAEHLE
HHHHHHCCCCCCCCCHHHHHHHHHHHHCCCCCHHHHHHHHCCCCHHHHHHHHHHHHHHHH
ERRLMLQWWADFLDVNRERFISPFEYAKINNPLKQ
HHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCC
# PDB_Accession:
& Not Available
# Resolution:
Not Available
# Structure_CLASS:
Mainly Alpha
# Quaternary_Structure:
Not Available
# Interacting_Partners:
Unknown
# Cofactors:
Not Available
# Metals_Ions:
Not Available
# Kcat_Value_[1/min]:
Not Available
# Specific_Activity_[micromol/min/mg]:
Not Available
# Km_Value_[mM]:
Not Available
# Substrates:
Not Available
# Products:
Not Available
# Specific_Reaction:
Not Available
# General_Reaction:
Not Available
# Inhibitor:
Not Available
# Priority:
7.3
# Status:
Not Available
# Availability:
Not Available
#END_ECARDFILE
#BEGIN_ECARDFILE
# Entry_ID:
CC3595A.1
# Accession_No.:
UA0003595
# Name:
GTP-binding protein engA
# Alternate_Names:
Double era-like domain protein
# General_Function:
Cellular processes; P-loop containing nucleotide triphosphate hydrolases
# COG_Function:
General function prediction only (code R)
# COG_ID:
COG1160 Predicted GTPases (Evalue = 0.0)
# Specific_Function:
GTPase of unknown physiological role. Genes yfgK-yfgJ are regulated by attenuation.
# Riley_Gene_Function:
GTP-binding protein, essential for cell growth
# Riley_Cell_Function:
>>>
Not Available
# Gene_Ontology:
>>>
Function: binding
Function: nucleotide binding
Function: purine nucleotide binding
Function: guanyl nucleotide binding
Function: GTP binding
||
>>>
Function: binding
Function: nucleotide binding
Function: purine nucleotide binding
Function: guanyl nucleotide binding
Function: GTP binding
||
>>>
Function: binding
Function: nucleotide binding
Function: purine nucleotide binding
Function: guanyl nucleotide binding
Function: GTP binding
||
>>>
Function: binding
Function: nucleotide binding
Function: purine nucleotide binding
Function: guanyl nucleotide binding
Function: GTP binding
||
>>>
Process: Not Available
||
>>>
Component: cell
Component: intracellular
# Location:
Cytoplasm
# Blattner_Number:
b2511
# Gene_Sequence:
ATGGTACCTGTGGTCGCGCTTGTCGGGCGCCCTAACGTAGGAAAATCCACGTTATTTAACCGTCTAACTC
GCACCCGAGATGCGCTGGTTGCGGATTTCCCGGGTCTGACTCGTGACCGTAAGTACGGTCGTGCGGAAAT
TGAAGGCCGTGAGTTTATCTGTATTGATACCGGCGGGATTGATGGCACAGAAGACGGTGTAGAAACCCGC
ATGGCGGAACAGTCGCTGCTGGCGATTGAAGAAGCGGACGTCGTACTGTTTATGGTGGATGCGCGCGCGG
GCCTGATGCCGGCAGATGAAGCGATTGCCAAACATCTGCGCTCCCGTGAAAAACCGACCTTCCTGGTGGC
AAACAAAACTGACGGTCTGGATCCCGATCAGGCAGTGGTTGATTTCTACTCGCTTGGTTTAGGTGAAATC
TACCCGATCGCCGCGTCTCACGGTCGTGGCGTATTAAGTCTGCTGGAGCATGTGCTGCTGCCGTGGATGG
AAGATCTCGCACCGCAAGAGGAAGTCGACGAAGACGCTGAATACTGGGCGCAATTTGAAGCGGAAGAGAA
CGGCGAAGAAGAAGAGGAAGACGACTTCGACCCGCAAAGTCTGCCGATCAAACTGGCGATTGTGGGTCGT
CCGAACGTAGGTAAGTCTACACTCACTAACCGTATTCTTGGTGAAGAGCGCGTTGTTGTTTACGACATGC
CTGGCACGACGCGTGACAGCATCTACATCCCAATGGAACGCGATGGACGTGAGTATGTGCTCATTGACAC
CGCTGGCGTACGTAAACGCGGCAAAATCACCGATGCTGTAGAGAAATTCTCCGTAATCAAAACGTTGCAG
GCCATTGAAGACGCCAACGTGGTGATGTTAGTGATTGATGCGCGCGAAGGTATTTCCGATCAGGATCTCT
CGCTGCTGGGCTTTATTCTCAATAGTGGGCGCTCACTTGTCATTGTGGTGAATAAGTGGGATGGCCTGAG
TCAGGAAGTGAAAGAGCAGGTGAAAGAAACGCTGGACTTCCGTCTGGGCTTTATCGATTTTGCTCGTGTG
CACTTTATCTCTGCCTTGCACGGCAGTGGTGTTGGTAACTTGTTTGAATCAGTACGTGAAGCGTATGACA
GCTCCACCCGTCGTGTGGGGACCTCTATGCTGACGCGCATCATGACGATGGCTGTTGAAGATCACCAACC
GCCGCTGGTACGCGGTCGTCGTGTGAAGCTGAAATATGCCCACGCCGGTGGTTATAACCCGCCGATTGTG
GTGATTCACGGTAATCAGGTGAAAGACCTGCCTGATTCCTACAAGCGCTACTTGATGAACTACTTCCGCA
AATCGCTGGACGTAATGGGATCGCCGATTCGTATTCAGTTCAAAGAAGGGGAAAACCCGTATGCGAATAA
GCGTAACACCCTGACGCCAACCCAGATGCGTAAACGTAAGCGTCTGATGAAGCACATCAAGAAAAATAAA
TAA
# Upstream_100_bases:
TTTGAAAACGGCTCCTGGACAGGGGCCGTTTTCCTGTTTTTAACAACGACGCGAATATAGCGTGCGTTGT
CTGATGATTTATAAAAATGAGGCTTTAAAC
# Blattner_No_Ontology:
Putative enzymes
# Gene_Position:
2633906-2635378 (Counter Clockwise)
# Centisome_Position:
56.801
# Gene_Name:
engA or der or yfgK
# GC_Content:
52.21%
# Metabolic_Importance:
Unknown
# Preceding_Gene:
yfgJ
# Following_Gene:
yfgL
# Operon_Status:
No
# Operon_Components:
None
# Paralogues:
None
# Copy Number:
Unknown
# RNA_Copy_No.:
Log phase (2max): 0.09
Stationary phase (2max): 0.13
Ref: Nature Biotech., 18, 1262-68, Dec. 2000 (PMID=11101804)
# Genbank_ID_(DNA):
G1788858
# Genbank_ID_(Protein):
AAC75564.1
# SWISS_PROT_(AC_&_ID):
$ ENGA_ECOLI (P0A6P5)
# 2D_Gel_Image:
Not Available
# Other_Databases:
- ECOCYC: EG14207
- EcoGene: EG14207
- EMBL: U00096
- InterPro: IPR006073; IPR005289; IPR002917; IPR005225
- Pfam: PF01926
- PRINTS: PR00326
# Pfam_Domain/Function:
PF01926 GTPase of unknown function
# Homologues:
Organism=Caenorhabditis elegans, GI17507259, Length=439, Positives=56%, Blast Score=67.0
Organism=Saccharomyces cerevisiae, GI6323665, Length=526, Positives=56%, Blast Score=78.6
Organism=Mus musculus, GI33414589, Length=492, Positives=48%, Blast Score=65.5
# Similarity:
Belongs to the era/trmE GTP-binding protein family. EngA subfamily.
# EC_Number:
Not Available
# No._of_Amino_Acids:
490 (Translated Protein)
490 (Mature Protein)
# Molecular_Weight:
55037 55037
# Theoretical_pI:
5.59
# Theoretical_pI (Mature):
5.59
# Sequence:
// MVPVVALVGRPNVGKSTLFNRLTRTRDALVADFPGLTRDRKYGRAEIEGREFICIDTGGI
// DGTEDGVETRMAEQSLLAIEEADVVLFMVDARAGLMPADEAIAKHLRSREKPTFLVANKT
// DGLDPDQAVVDFYSLGLGEIYPIAASHGRGVLSLLEHVLLPWMEDLAPQEEVDEDAEYWA
// QFEAEENGEEEEEDDFDPQSLPIKLAIVGRPNVGKSTLTNRILGEERVVVYDMPGTTRDS
// IYIPMERDGREYVLIDTAGVRKRGKITDAVEKFSVIKTLQAIEDANVVMLVIDAREGISD
// QDLSLLGFILNSGRSLVIVVNKWDGLSQEVKEQVKETLDFRLGFIDFARVHFISALHGSG
// VGNLFESVREAYDSSTRRVGTSMLTRIMTMAVEDHQPPLVRGRRVKLKYAHAGGYNPPIV
// VIHGNQVKDLPDSYKRYLMNYFRKSLDVMGSPIRIQFKEGENPYANKRNTLTPTQMRKRK
// RLMKHIKKNK
// /\
// MVPVVALVGRPNVGKSTLFNRLTRTRDALVADFPGLTRDRKYGRAEIEGREFICIDTGGI
// DGTEDGVETRMAEQSLLAIEEADVVLFMVDARAGLMPADEAIAKHLRSREKPTFLVANKT
// DGLDPDQAVVDFYSLGLGEIYPIAASHGRGVLSLLEHVLLPWMEDLAPQEEVDEDAEYWA
// QFEAEENGEEEEEDDFDPQSLPIKLAIVGRPNVGKSTLTNRILGEERVVVYDMPGTTRDS
// IYIPMERDGREYVLIDTAGVRKRGKITDAVEKFSVIKTLQAIEDANVVMLVIDAREGISD
// QDLSLLGFILNSGRSLVIVVNKWDGLSQEVKEQVKETLDFRLGFIDFARVHFISALHGSG
// VGNLFESVREAYDSSTRRVGTSMLTRIMTMAVEDHQPPLVRGRRVKLKYAHAGGYNPPIV
// VIHGNQVKDLPDSYKRYLMNYFRKSLDVMGSPIRIQFKEGENPYANKRNTLTPTQMRKRK
// RLMKHIKKNK
# PROSITE_Motif:
Not Available
NP_Binding 9 16 GTP 1 (Potential)
NP_Binding 56 60 GTP 1 (Potential)
NP_Binding 118 121 GTP 1 (Potential)
NP_Binding 209 216 GTP 2 (Potential)
NP_Binding 256 260 GTP 2 (Potential)
NP_Binding 321 324 GTP 2 (Potential)
# Important_Sites:
Not Available
# Transmembrane:
Not Available
# Cys/Met_Content:
0.2 %Cys (Translated Protein)
3.1 %Met (Translated Protein)
3.3 %Cys+Met (Translated Protein)
0.2 %Cys (Mature Protein)
3.1 %Met (Mature Protein)
3.3 %Cys+Met (Mature Protein)
# Secondary_Structure_(PDB):
ATVLIVGRPNVGKSTLFNKLVKDPVQDTVEWYGKTFKLVDTCGVFDNPQDI
CEEEEEECCCCCHHHHHHHHHCCCEEEEEECCCEEEEEEECCCCCCCCCCC
ISQKKEVTLNIREADLVLFVVDGKRGITKEDESLADFLRKSTVDTILVANK
CCCCCHHHHCCCCCEEEEEEEEECCCCCHHHHHHHHHHHHHCEEEEEEEEC
AENLREFEREVKPELYSLGFGEPIPVSAEHNINLDTLETIIKKLEEKGLDL
CCHHHHHHHHHHHHHHHHCCCCEEEEECCCCCCCCCCHHHHHHHHHHCCCC
ESKPEITDAIKVAIVGRPNVGKSTLFNAILNKERALVSPIPVDDEVFIDGR
CCCCCCCCEEEEEEECCCCCCHHHHHHHHHHCCCEEEECCCCEEEEEECCE
KYVFVDTAGLEKYSNYRVVDSIEKADVVVIVLDATQGITRQDQRAGLERRG
EEEEECCCCCCCCCCHHHHHHHHHCEEEEEEEECCCCCCHHHHCCCCCCCC
RASVVVFNKWDLVVHREKRYDEFTKLFREKLYFIDYSPLIFTSADKGWNID
EEEEEEEECCCCCCCCCCCHHHHHHHHHHHCCCCCCEEEEEEECCCCCCCC
RIDANLAYASYTTKVPSSAINSALQKVLAFTNLPRGLKIFFGVQVDIKPPT
CCCCCHHHHHHCCCCCHHHHHHHHHHHHHCCCCCCCEEEEEEEEEECCEEE
FLFFVNSIEKVKNPQKIFLRKLIRDYVFPFEGSPIFLKFKRSR
EEEEEECCCCCCHHHHHHHHHHHHHHCCCCCCCCEEEEEEEEC
# PDB_Accession:
& Model Based on 1MKY (27-433)
# Resolution:
Not Available
# Structure_CLASS:
Alpha Beta
# Quaternary_Structure:
Not Available
# Interacting_Partners:
Not Available
# Cofactors:
Not Available
# Metals_Ions:
Not Available
# Kcat_Value_[1/min]:
Not Available
# Specific_Activity_[micromol/min/mg]:
Not Available
# Km_Value_[mM]:
Not Available
# Substrates:
Not Available
# Products:
Not Available
# Specific_Reaction:
Not Available
# General_Reaction:
Not Available
# Inhibitor:
Not Available
# Priority:
1.0
# Status:
Selected, Cloned, Expressed
# Availability:
Laboratory of Structural & Genomic Information
#END_ECARDFILE
#BEGIN_ECARDFILE
# Entry_ID:
CC2966A.1
# Accession_No.:
UA0002966
# Name:
Outer membrane lipoprotein slyB precursor
# Alternate_Names:
Not Available
# General_Function:
Cell envelope
# COG_Function:
Cell wall/membrane/envelope biogenesis (code M)
# COG_ID:
COG3133 Outer membrane lipoprotein (Evalue = 8e-82)
# Specific_Function:
Not Available
# Riley_Gene_Function:
putative outer membrane lipoprotein
# Riley_Cell_Function:
>>>
Cell structure
Membrane
||
>>>
Location of gene products
Outer membrane
# Gene_Ontology:
>>>
Function: Not Available
||
>>>
Process: Not Available
||
>>>
Component: cell
Component: membrane
Component: outer membrane
# Location:
Attached To The Outer Membrane By A Lipid Anchor
# Blattner_Number:
b1641
# Gene_Sequence:
ATGATTAAACGCGTATTGGTTGTTTCAATGGTAGGTCTGTCTCTTGTCGGTTGTGTTAATAACGACACCC
TGTCAGGGGATGTTTATACCGCTTCTGAAGCGAAACAAGTACAGAATGTCAGCTATGGCACCATCGTTAA
CGTACGTCCGGTACAGATTCAGGGCGGTGATGATTCCAACGTTATCGGTGCAATTGGCGGTGCTGTTCTT
GGTGGTTTCCTGGGGAATACTGTTGGTGGCGGAACCGGGCGTTCTCTGGCTACTGCAGCAGGCGCTGTTG
CAGGTGGCGTAGCTGGTCAGGGCGTACAGAGTGCAATGAACAAAACGCAGGGTGTCGAGCTGGAAATTCG
TAAAGACGATGGTAATACCATCATGGTGGTACAGAAACAAGGCAACACTCGTTTCTCTCCGGGCCAACGT
GTCGTACTGGCCAGCAATGGCAGTCAGGTGACCGTTTCTCCGCGCTAA
# Upstream_100_bases:
CATATTTGGTAGAACATGTAACCATGGATTCACATATGCCATATACTTTGACCATGAGGGATGCTTGCGT
GGCGTTTCATGGTGAACAGGAGATTTTTCA
# Blattner_No_Ontology:
Hypothetical, unclassified, unknown
# Gene_Position:
1717900-1718367 (Clockwise)
# Centisome_Position:
37.026
# Gene_Name:
slyB
# GC_Content:
51.28%
# Metabolic_Importance:
Unknown
# Preceding_Gene:
ydhH
# Following_Gene:
slyA
# Operon_Status:
No
# Operon_Components:
None
# Paralogues:
b2505 (yfgH) 27; b1110 (ycfJ) 32;
# Copy Number:
Unknown
# RNA_Copy_No.:
Log phase (2max): 162754.79
Stationary phase (2max): 2.19
Ref: Nature Biotech., 18, 1262-68, Dec. 2000 (PMID=11101804)
# Genbank_ID_(DNA):
G1787929
# Genbank_ID_(Protein):
AAC74713.1
# SWISS_PROT_(AC_&_ID):
$ SLYB_ECOLI (P0A905)
# 2D_Gel_Image:
Not Available
# Other_Databases:
- ECOCYC: EG13409
- EcoGene: EG13409
- EMBL: AP009048
- InterPro: IPR008816
- Pfam: PF05433
- PIR: C64921
- PROSITE: PS00013
# Pfam_Domain/Function:
None
# Homologues:
Not Available
# Similarity:
Belongs to the pcp/slyB lipoprotein family.
# EC_Number:
Not Available
# No._of_Amino_Acids:
155 (Translated Protein)
134 (Mature Protein)
# Molecular_Weight:
15602 13388
# Theoretical_pI:
9.79
# Theoretical_pI (Mature):
9.07
# Sequence:
// MIKRVLVVSMVGLSLVGCVNNDTLSGDVYTASEAKQVQNVSYGTIVNVRPVQIQGGDDSN
// VIGAIGGAVLGGFLGNTVGGGTGRSLATAAGAVAGGVAGQGVQSAMNKTQGVELEIRKDD
// GNTIMVVQKQGNTRFSPGQRVVLASNGSQVTVSPR
// /\
// DTLSGDVYTASEAKQVQNVSYGTIVNVRPVQIQGGDDSNVIGAIGGAVLGGFLGNTVGGG
// TGRSLATAAGAVAGGVAGQGVQSAMNKTQGVELEIRKDDGNTIMVVQKQGNTRFSPGQRV
// VLASNGSQVTVSPR
# PROSITE_Motif:
PROKAR_LIPOPROTEIN; RULE. PS00013; Prokaryotic membrane lipoprotein lipid attachment site. {DERK}(6)-[LIVMFWSTAG](2)-[LIVMFYSTAGCQ]-[AGS]-C. Additional rules:RU (1) The sequence must start with Met.RU (2) The cysteine must be between positions 15 and 35 of the sequence inRU consideration.RU (3) There must be at least one charged residue (Lys or Arg) in the firstRU seven residues of the sequence. PDOC00013; //
# Important_Sites:
Signal Chain 1 17
LIPID Site 18 18 N-ACYL DIGLYCERIDE
# Transmembrane:
Not Available
# Cys/Met_Content:
0.6 %Cys (Translated Protein)
2.6 %Met (Translated Protein)
3.2 %Cys+Met (Translated Protein)
0.0 %Cys (Mature Protein)
1.5 %Met (Mature Protein)
1.5 %Cys+Met (Mature Protein)
# Secondary_Structure:
>SLYB_ECOLI (Translated Protein)
MIKRVLVVSMVGLSLVGCVNNDTLSGDVYTASEAKQVQNVSYGTIVNVRPVQIQGGDDSN
CCCCHHHHHHHHHHHHCCCCCCEEEECCCCHHHCCEEEEEEEEEEEEEEEEEEEECCCCC
VIGAIGGAVLGGFLGNTVGGGTGRSLATAAGAVAGGVAGQGVQSAMNKTQGVELEIRKDD
EEHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHCCHHCCCCCEEEEEEECC
GNTIMVVQKQGNTRFSPGQRVVLASNGSQVTVSPR
CCEEEEEEECCCEEEECCCEEEEEECCEEEEECCC
/\
>SLYB_ECOLI (Mature Protein)
CVNNDTLSGDVYTASEAKQVQNVSYGTIVNVRPVQIQGGDDSNVIGAIGGAVLGGFLGNT
CCCCCEEEECCCCHHHCCEEEEEEEEEEEEEEEEEEEECCCCCEEHHHHHHHHHHHHHHC
VGGGTGRSLATAAGAVAGGVAGQGVQSAMNKTQGVELEIRKDDGNTIMVVQKQGNTRFSP
CCCCHHHHHHHHHHHHHHHHHHHHHCCHHCCCCCEEEEEEECCCCEEEEEEECCCEEEEC
GQRVVLASNGSQVTVSPR
CCEEEEEECCEEEEECCC
# PDB_Accession:
& Not Available
# Resolution:
Not Available
# Structure_CLASS:
Alpha Beta
# Quaternary_Structure:
Not Available
# Interacting_Partners:
Not Available
# Cofactors:
Not Available
# Metals_Ions:
Not Available
# Kcat_Value_[1/min]:
Not Available
# Specific_Activity_[micromol/min/mg]:
Not Available
# Km_Value_[mM]:
Not Available
# Substrates:
Not Available
# Products:
Not Available
# Specific_Reaction:
Not Available
# General_Reaction:
Not Available
# Inhibitor:
Not Available
# Priority:
6.6
# Status:
Not Available
# Availability:
Not Available
#END_ECARDFILE
#BEGIN_ECARDFILE
# Entry_ID:
CC4304A.1
# Accession_No.:
UA0004304
# Name:
HTH-type transcriptional regulator cueR
# Alternate_Names:
Copper efflux regulator; Copper export regulator
# General_Function:
Regulatory functions; Member of MerR; Putative DNA-binding domain
# COG_Function:
General function prediction only (code R)
# COG_ID:
COG2103 Predicted sugar phosphate isomerase (Evalue = 2e-74)
# Specific_Function:
Regulates the transcription of the copA and cueO genes. It detects cytoplasmic copper stress and activates transcription in response to increasing copper concentrations.
# Riley_Gene_Function:
DNA-binding transcriptional repressor for CopA a copper exporting ATPase (MerR family)
# Riley_Cell_Function:
>>>
Information transfer
RNA related
Transcription related
||
>>>
Regulation
Type of regulation
Transcriptional level
Repressor
# Gene_Ontology:
>>>
Function: binding
Function: nucleic acid binding
Function: DNA binding
||
>>>
Function: binding
Function: nucleic acid binding
Function: DNA binding
Function: transcription factor activity
||
>>>
Function: transcription regulator activity
Function: transcription factor activity
||
>>>
Process: physiological process
Process: metabolism
Process: regulation of metabolism
Process: positive regulation of metabolism
Process: positive regulation of cellular metabolism
Process: positive regulation of nucleobase, nucleoside, nucleotide and nucleic acid metabolism
Process: positive regulation of transcription
||
>>>
Process: regulation of cellular metabolism
Process: regulation of nucleobase, nucleoside, nucleotide and nucleic acid metabolism
Process: regulation of transcription
Process: positive regulation of transcription
||
>>>
Process: positive regulation of nucleobase, nucleoside, nucleotide and nucleic acid metabolism
Process: positive regulation of transcription
||
>>>
Process: positive regulation of cellular metabolism
Process: positive regulation of nucleobase, nucleoside, nucleotide and nucleic acid metabolism
Process: positive regulation of transcription
||
>>>
Process: cellular metabolism
Process: nucleobase, nucleoside, nucleotide and nucleic acid metabolism
Process: transcription
Process: regulation of transcription
Process: positive regulation of transcription
||
>>>
Process: regulation of nucleobase, nucleoside, nucleotide and nucleic acid metabolism
Process: regulation of transcription
Process: positive regulation of transcription
||
>>>
Process: positive regulation of nucleobase, nucleoside, nucleotide and nucleic acid metabolism
Process: positive regulation of transcription
||
>>>
Process: regulation of cellular metabolism
Process: regulation of nucleobase, nucleoside, nucleotide and nucleic acid metabolism
Process: regulation of transcription
Process: positive regulation of transcription
||
>>>
Process: positive regulation of nucleobase, nucleoside, nucleotide and nucleic acid metabolism
Process: positive regulation of transcription
||
>>>
Process: positive regulation of cellular metabolism
Process: positive regulation of nucleobase, nucleoside, nucleotide and nucleic acid metabolism
Process: positive regulation of transcription
||
>>>
Process: primary metabolism
Process: nucleobase, nucleoside, nucleotide and nucleic acid metabolism
Process: transcription
Process: regulation of transcription
Process: positive regulation of transcription
||
>>>
Process: regulation of nucleobase, nucleoside, nucleotide and nucleic acid metabolism
Process: regulation of transcription
Process: positive regulation of transcription
||
>>>
Process: positive regulation of nucleobase, nucleoside, nucleotide and nucleic acid metabolism
Process: positive regulation of transcription
||
>>>
Process: regulation of physiological process
Process: regulation of metabolism
Process: positive regulation of metabolism
Process: positive regulation of cellular metabolism
Process: positive regulation of nucleobase, nucleoside, nucleotide and nucleic acid metabolism
Process: positive regulation of transcription
||
>>>
Process: regulation of cellular metabolism
Process: regulation of nucleobase, nucleoside, nucleotide and nucleic acid metabolism
Process: regulation of transcription
Process: positive regulation of transcription
||
>>>
Process: positive regulation of nucleobase, nucleoside, nucleotide and nucleic acid metabolism
Process: positive regulation of transcription
||
>>>
Process: positive regulation of cellular metabolism
Process: positive regulation of nucleobase, nucleoside, nucleotide and nucleic acid metabolism
Process: positive regulation of transcription
||
>>>
Process: positive regulation of physiological process
Process: positive regulation of metabolism
Process: positive regulation of cellular metabolism
Process: positive regulation of nucleobase, nucleoside, nucleotide and nucleic acid metabolism
Process: positive regulation of transcription
||
>>>
Process: positive regulation of cellular physiological process
Process: positive regulation of cellular metabolism
Process: positive regulation of nucleobase, nucleoside, nucleotide and nucleic acid metabolism
Process: positive regulation of transcription
||
>>>
Process: regulation of cellular physiological process
Process: regulation of cellular metabolism
Process: regulation of nucleobase, nucleoside, nucleotide and nucleic acid metabolism
Process: regulation of transcription
Process: positive regulation of transcription
||
>>>
Process: positive regulation of nucleobase, nucleoside, nucleotide and nucleic acid metabolism
Process: positive regulation of transcription
||
>>>
Process: positive regulation of cellular metabolism
Process: positive regulation of nucleobase, nucleoside, nucleotide and nucleic acid metabolism
Process: positive regulation of transcription
||
>>>
Process: positive regulation of cellular physiological process
Process: positive regulation of cellular metabolism
Process: positive regulation of nucleobase, nucleoside, nucleotide and nucleic acid metabolism
Process: positive regulation of transcription
||
>>>
Process: cellular physiological process
Process: cellular metabolism
Process: nucleobase, nucleoside, nucleotide and nucleic acid metabolism
Process: transcription
Process: regulation of transcription
Process: positive regulation of transcription
||
>>>
Process: regulation of nucleobase, nucleoside, nucleotide and nucleic acid metabolism
Process: regulation of transcription
Process: positive regulation of transcription
||
>>>
Process: positive regulation of nucleobase, nucleoside, nucleotide and nucleic acid metabolism
Process: positive regulation of transcription
||
>>>
Process: regulation of cellular metabolism
Process: regulation of nucleobase, nucleoside, nucleotide and nucleic acid metabolism
Process: regulation of transcription
Process: positive regulation of transcription
||
>>>
Process: positive regulation of nucleobase, nucleoside, nucleotide and nucleic acid metabolism
Process: positive regulation of transcription
||
>>>
Process: positive regulation of cellular metabolism
Process: positive regulation of nucleobase, nucleoside, nucleotide and nucleic acid metabolism
Process: positive regulation of transcription
||
>>>
Process: regulation of cellular physiological process
Process: regulation of cellular metabolism
Process: regulation of nucleobase, nucleoside, nucleotide and nucleic acid metabolism
Process: regulation of transcription
Process: positive regulation of transcription
||
>>>
Process: positive regulation of nucleobase, nucleoside, nucleotide and nucleic acid metabolism
Process: positive regulation of transcription
||
>>>
Process: positive regulation of cellular metabolism
Process: positive regulation of nucleobase, nucleoside, nucleotide and nucleic acid metabolism
Process: positive regulation of transcription
||
>>>
Process: positive regulation of cellular physiological process
Process: positive regulation of cellular metabolism
Process: positive regulation of nucleobase, nucleoside, nucleotide and nucleic acid metabolism
Process: positive regulation of transcription
||
>>>
Process: cellular process
Process: regulation of cellular process
Process: positive regulation of cellular process
Process: positive regulation of cellular physiological process
Process: positive regulation of cellular metabolism
Process: positive regulation of nucleobase, nucleoside, nucleotide and nucleic acid metabolism
Process: positive regulation of transcription
||
>>>
Process: regulation of cellular physiological process
Process: regulation of cellular metabolism
Process: regulation of nucleobase, nucleoside, nucleotide and nucleic acid metabolism
Process: regulation of transcription
Process: positive regulation of transcription
||
>>>
Process: positive regulation of nucleobase, nucleoside, nucleotide and nucleic acid metabolism
Process: positive regulation of transcription
||
>>>
Process: positive regulation of cellular metabolism
Process: positive regulation of nucleobase, nucleoside, nucleotide and nucleic acid metabolism
Process: positive regulation of transcription
||
>>>
Process: positive regulation of cellular physiological process
Process: positive regulation of cellular metabolism
Process: positive regulation of nucleobase, nucleoside, nucleotide and nucleic acid metabolism
Process: positive regulation of transcription
||
>>>
Process: cellular physiological process
Process: cellular metabolism
Process: nucleobase, nucleoside, nucleotide and nucleic acid metabolism
Process: transcription
Process: regulation of transcription
Process: positive regulation of transcription
||
>>>
Process: regulation of nucleobase, nucleoside, nucleotide and nucleic acid metabolism
Process: regulation of transcription
Process: positive regulation of transcription
||
>>>
Process: positive regulation of nucleobase, nucleoside, nucleotide and nucleic acid metabolism
Process: positive regulation of transcription
||
>>>
Process: regulation of cellular metabolism
Process: regulation of nucleobase, nucleoside, nucleotide and nucleic acid metabolism
Process: regulation of transcription
Process: positive regulation of transcription
||
>>>
Process: positive regulation of nucleobase, nucleoside, nucleotide and nucleic acid metabolism
Process: positive regulation of transcription
||
>>>
Process: positive regulation of cellular metabolism
Process: positive regulation of nucleobase, nucleoside, nucleotide and nucleic acid metabolism
Process: positive regulation of transcription
||
>>>
Process: regulation of cellular physiological process
Process: regulation of cellular metabolism
Process: regulation of nucleobase, nucleoside, nucleotide and nucleic acid metabolism
Process: regulation of transcription
Process: positive regulation of transcription
||
>>>
Process: positive regulation of nucleobase, nucleoside, nucleotide and nucleic acid metabolism
Process: positive regulation of transcription
||
>>>
Process: positive regulation of cellular metabolism
Process: positive regulation of nucleobase, nucleoside, nucleotide and nucleic acid metabolism
Process: positive regulation of transcription
||
>>>
Process: positive regulation of cellular physiological process
Process: positive regulation of cellular metabolism
Process: positive regulation of nucleobase, nucleoside, nucleotide and nucleic acid metabolism
Process: positive regulation of transcription
||
>>>
Process: regulation of biological process
Process: positive regulation of biological process
Process: positive regulation of physiological process
Process: positive regulation of metabolism
Process: positive regulation of cellular metabolism
Process: positive regulation of nucleobase, nucleoside, nucleotide and nucleic acid metabolism
Process: positive regulation of transcription
||
>>>
Process: positive regulation of cellular physiological process
Process: positive regulation of cellular metabolism
Process: positive regulation of nucleobase, nucleoside, nucleotide and nucleic acid metabolism
Process: positive regulation of transcription
||
>>>
Process: positive regulation of cellular process
Process: positive regulation of cellular physiological process
Process: positive regulation of cellular metabolism
Process: positive regulation of nucleobase, nucleoside, nucleotide and nucleic acid metabolism
Process: positive regulation of transcription
||
>>>
Process: regulation of physiological process
Process: regulation of metabolism
Process: positive regulation of metabolism
Process: positive regulation of cellular metabolism
Process: positive regulation of nucleobase, nucleoside, nucleotide and nucleic acid metabolism
Process: positive regulation of transcription
||
>>>
Process: regulation of cellular metabolism
Process: regulation of nucleobase, nucleoside, nucleotide and nucleic acid metabolism
Process: regulation of transcription
Process: positive regulation of transcription
||
>>>
Process: positive regulation of nucleobase, nucleoside, nucleotide and nucleic acid metabolism
Process: positive regulation of transcription
||
>>>
Process: positive regulation of cellular metabolism
Process: positive regulation of nucleobase, nucleoside, nucleotide and nucleic acid metabolism
Process: positive regulation of transcription
||
>>>
Process: positive regulation of physiological process
Process: positive regulation of metabolism
Process: positive regulation of cellular metabolism
Process: positive regulation of nucleobase, nucleoside, nucleotide and nucleic acid metabolism
Process: positive regulation of transcription
||
>>>
Process: positive regulation of cellular physiological process
Process: positive regulation of cellular metabolism
Process: positive regulation of nucleobase, nucleoside, nucleotide and nucleic acid metabolism
Process: positive regulation of transcription
||
>>>
Process: regulation of cellular physiological process
Process: regulation of cellular metabolism
Process: regulation of nucleobase, nucleoside, nucleotide and nucleic acid metabolism
Process: regulation of transcription
Process: positive regulation of transcription
||
>>>
Process: positive regulation of nucleobase, nucleoside, nucleotide and nucleic acid metabolism
Process: positive regulation of transcription
||
>>>
Process: positive regulation of cellular metabolism
Process: positive regulation of nucleobase, nucleoside, nucleotide and nucleic acid metabolism
Process: positive regulation of transcription
||
>>>
Process: positive regulation of cellular physiological process
Process: positive regulation of cellular metabolism
Process: positive regulation of nucleobase, nucleoside, nucleotide and nucleic acid metabolism
Process: positive regulation of transcription
||
>>>
Process: regulation of cellular process
Process: positive regulation of cellular process
Process: positive regulation of cellular physiological process
Process: positive regulation of cellular metabolism
Process: positive regulation of nucleobase, nucleoside, nucleotide and nucleic acid metabolism
Process: positive regulation of transcription
||
>>>
Process: regulation of cellular physiological process
Process: regulation of cellular metabolism
Process: regulation of nucleobase, nucleoside, nucleotide and nucleic acid metabolism
Process: regulation of transcription
Process: positive regulation of transcription
||
>>>
Process: positive regulation of nucleobase, nucleoside, nucleotide and nucleic acid metabolism
Process: positive regulation of transcription
||
>>>
Process: positive regulation of cellular metabolism
Process: positive regulation of nucleobase, nucleoside, nucleotide and nucleic acid metabolism
Process: positive regulation of transcription
||
>>>
Process: positive regulation of cellular physiological process
Process: positive regulation of cellular metabolism
Process: positive regulation of nucleobase, nucleoside, nucleotide and nucleic acid metabolism
Process: positive regulation of transcription
Process: physiological process
Process: metabolism
Process: regulation of metabolism
Process: regulation of cellular metabolism
Process: regulation of nucleobase, nucleoside, nucleotide and nucleic acid metabolism
Process: regulation of transcription
Process: regulation of transcription, DNA-dependent
||
>>>
Process: cellular metabolism
Process: nucleobase, nucleoside, nucleotide and nucleic acid metabolism
Process: transcription
Process: transcription, DNA-dependent
Process: regulation of transcription, DNA-dependent
||
>>>
Process: regulation of transcription
Process: regulation of transcription, DNA-dependent
||
>>>
Process: regulation of nucleobase, nucleoside, nucleotide and nucleic acid metabolism
Process: regulation of transcription
Process: regulation of transcription, DNA-dependent
||
>>>
Process: regulation of cellular metabolism
Process: regulation of nucleobase, nucleoside, nucleotide and nucleic acid metabolism
Process: regulation of transcription
Process: regulation of transcription, DNA-dependent
||
>>>
Process: primary metabolism
Process: nucleobase, nucleoside, nucleotide and nucleic acid metabolism
Process: transcription
Process: transcription, DNA-dependent
Process: regulation of transcription, DNA-dependent
||
>>>
Process: regulation of transcription
Process: regulation of transcription, DNA-dependent
||
>>>
Process: regulation of nucleobase, nucleoside, nucleotide and nucleic acid metabolism
Process: regulation of transcription
Process: regulation of transcription, DNA-dependent
||
>>>
Process: regulation of physiological process
Process: regulation of metabolism
Process: regulation of cellular metabolism
Process: regulation of nucleobase, nucleoside, nucleotide and nucleic acid metabolism
Process: regulation of transcription
Process: regulation of transcription, DNA-dependent
||
>>>
Process: regulation of cellular physiological process
Process: regulation of cellular metabolism
Process: regulation of nucleobase, nucleoside, nucleotide and nucleic acid metabolism
Process: regulation of transcription
Process: regulation of transcription, DNA-dependent
||
>>>
Process: cellular physiological process
Process: cellular metabolism
Process: nucleobase, nucleoside, nucleotide and nucleic acid metabolism
Process: transcription
Process: transcription, DNA-dependent
Process: regulation of transcription, DNA-dependent
||
>>>
Process: regulation of transcription
Process: regulation of transcription, DNA-dependent
||
>>>
Process: regulation of nucleobase, nucleoside, nucleotide and nucleic acid metabolism
Process: regulation of transcription
Process: regulation of transcription, DNA-dependent
||
>>>
Process: regulation of cellular metabolism
Process: regulation of nucleobase, nucleoside, nucleotide and nucleic acid metabolism
Process: regulation of transcription
Process: regulation of transcription, DNA-dependent
||
>>>
Process: regulation of cellular physiological process
Process: regulation of cellular metabolism
Process: regulation of nucleobase, nucleoside, nucleotide and nucleic acid metabolism
Process: regulation of transcription
Process: regulation of transcription, DNA-dependent
||
>>>
Process: cellular process
Process: regulation of cellular process
Process: regulation of cellular physiological process
Process: regulation of cellular metabolism
Process: regulation of nucleobase, nucleoside, nucleotide and nucleic acid metabolism
Process: regulation of transcription
Process: regulation of transcription, DNA-dependent
||
>>>
Process: cellular physiological process
Process: cellular metabolism
Process: nucleobase, nucleoside, nucleotide and nucleic acid metabolism
Process: transcription
Process: transcription, DNA-dependent
Process: regulation of transcription, DNA-dependent
||
>>>
Process: regulation of transcription
Process: regulation of transcription, DNA-dependent
||
>>>
Process: regulation of nucleobase, nucleoside, nucleotide and nucleic acid metabolism
Process: regulation of transcription
Process: regulation of transcription, DNA-dependent
||
>>>
Process: regulation of cellular metabolism
Process: regulation of nucleobase, nucleoside, nucleotide and nucleic acid metabolism
Process: regulation of transcription
Process: regulation of transcription, DNA-dependent
||
>>>
Process: regulation of cellular physiological process
Process: regulation of cellular metabolism
Process: regulation of nucleobase, nucleoside, nucleotide and nucleic acid metabolism
Process: regulation of transcription
Process: regulation of transcription, DNA-dependent
||
>>>
Process: regulation of biological process
Process: regulation of physiological process
Process: regulation of metabolism
Process: regulation of cellular metabolism
Process: regulation of nucleobase, nucleoside, nucleotide and nucleic acid metabolism
Process: regulation of transcription
Process: regulation of transcription, DNA-dependent
||
>>>
Process: regulation of cellular physiological process
Process: regulation of cellular metabolism
Process: regulation of nucleobase, nucleoside, nucleotide and nucleic acid metabolism
Process: regulation of transcription
Process: regulation of transcription, DNA-dependent
||
>>>
Process: regulation of cellular process
Process: regulation of cellular physiological process
Process: regulation of cellular metabolism
Process: regulation of nucleobase, nucleoside, nucleotide and nucleic acid metabolism
Process: regulation of transcription
Process: regulation of transcription, DNA-dependent
||
>>>
Component: cell
Component: intracellular
# Location:
Not Available
# Blattner_Number:
b0487
# Gene_Sequence:
ATGAACATCAGCGATGTAGCAAAAATTACCGGCCTGACCAGCAAAGCCATTCGCTTCTATGAAGAGAAGG
GGCTGGTGACGCCGCCGATGCGCAGCGAAAACGGTTATCGCACCTACACGCAGCAGCATCTCAACGAACT
GACCTTACTGCGCCAGGCACGGCAGGTGGGCTTTAACCTGGAAGAGAGCGGCGAGCTGGTGAATCTGTTT
AACGACCCGCAGCGGCACAGCGCCGACGTCAAACGGCGCACGCTGGAGAAGGTGGCGGAGATCGAACGAC
ACATTGAGGAGCTGCAATCCATGCGCGACCAGCTGCTGGCACTGGCGAATGCCTGCCCTGGCGATGACAG
CGCCGACTGCCCGATTATCGAAAATCTCTCCGGCTGCTGTCATCATCGGGCAGGGTGA
# Upstream_100_bases:
TGTATTATTGTGGTGGCGGTCGATATTCGCACTGGCAAAAAAACGTGCTTGAATATCTGTTGAAACCCTT
TAACAAAGCACAGGAGGCGTTGCGCGAACG
# Blattner_No_Ontology:
Cell processes incl. adaptation, protection
# Gene_Position:
513217-513624 (Clockwise)
# Centisome_Position:
11.061
# Gene_Name:
cueR
# GC_Content:
58.58%
# Metabolic_Importance:
Unknown
# Preceding_Gene:
ybaT
# Following_Gene:
ybbJ
# Operon_Status:
No
# Operon_Components:
None
# Paralogues:
b3292 (zntR) 38; b4063 (soxR) 29;
# Copy Number:
10-20 Molecules/Cell
# RNA_Copy_No.:
Log phase (2max): 1.24
Stationary phase (2max): 0.1
Ref: Nature Biotech., 18, 1262-68, Dec. 2000 (PMID=11101804)
# Genbank_ID_(DNA):
G1786695
# Genbank_ID_(Protein):
AAC73589.1
# SWISS_PROT_(AC_&_ID):
$ CUER_ECOLI (P0A9G4)
# 2D_Gel_Image:
Not Available
# Other_Databases:
- ECOCYC: EG13256
- EcoGene: EG13256
- EMBL: AF318185
- InterPro: IPR011789; IPR009061; IPR000551
- Pfam: PF00376
- PIR: F64779
- PRINTS: PR00040
- PROSITE: PS00552
# Pfam_Domain/Function:
PF00376 MerR family regulatory protein
# Homologues:
Not Available
# Similarity:
Contains 1 HTH merR-type DNA-binding domain.
# EC_Number:
Not Available
# No._of_Amino_Acids:
135 (Translated Protein)
135 (Mature Protein)
# Molecular_Weight:
15235 15235
# Theoretical_pI:
6.00
# Theoretical_pI (Mature):
6.00
# Sequence:
// MNISDVAKITGLTSKAIRFYEEKGLVTPPMRSENGYRTYTQQHLNELTLLRQARQVGFNL
// EESGELVNLFNDPQRHSADVKRRTLEKVAEIERHIEELQSMRDQLLALANACPGDDSADC
// PIIENLSGCCHHRAG
// /\
// MNISDVAKITGLTSKAIRFYEEKGLVTPPMRSENGYRTYTQQHLNELTLLRQARQVGFNL
// EESGELVNLFNDPQRHSADVKRRTLEKVAEIERHIEELQSMRDQLLALANACPGDDSADC
// PIIENLSGCCHHRAG
# PROSITE_Motif:
HTH_MERR_FAMILY; PATTERN. PS00552; Bacterial regulatory proteins, merR family signature. [GSA]-x-[LIVMFA]-[ASM]-x(2)-[STACLIV]-[GSDENQR]-[LIVC]-[STANHK]-x(3)-PA [LIVM]-[RHF]-x-[YW]-[DEQ]-x(2,3)-[GHDNQ]-[LIVMF](2). PDOC00477; //
# Important_Sites:
Not Available
# Transmembrane:
Not Available
# Cys/Met_Content:
3.0 %Cys (Translated Protein)
2.2 %Met (Translated Protein)
5.2 %Cys+Met (Translated Protein)
3.0 %Cys (Mature Protein)
2.2 %Met (Mature Protein)
5.2 %Cys+Met (Mature Protein)
# Secondary_Structure:
>CUER_ECOLI (Translated Protein)
MNISDVAKITGLTSKAIRFYEEKGLVTPPMRSENGYRTYTQQHLNELTLLRQARQVGFNL
CCHHHHHHHHCCCHHHHHHHHHCCCCCCCCCCCCCCEECCHHHHHHHHHHHHHHHCCCCH
EESGELVNLFNDPQRHSADVKRRTLEKVAEIERHIEELQSMRDQLLALANACPGDDSADC
HHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCH
PIIENLSGCCHHRAG
HHHHHHHCCCCCCCC
/\
>CUER_ECOLI (Mature Protein)
NISDVAKITGLTSKAIRFYEEKGLVTPPMRSENGYRTYTQQHLNELTLLRQARQVGFNLE
CHHHHHHHHCCCHHHHHHHHHCCCCCCCCCCCCCCEECCHHHHHHHHHHHHHHHCCCCHH
ESGELVNLFNDPQRHSADVKRRTLEKVAEIERHIEELQSMRDQLLALANACPGDDSADCP
HHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCHH
IIENLSGCCHHRAG
HHHHHHCCCCCCCC
# PDB_Accession:
& Not Available
# Resolution:
Not Available
# Structure_CLASS:
Mainly Alpha
# Quaternary_Structure:
Not Available
# Interacting_Partners:
1) DNA,
# Cofactors:
Not Available
# Metals_Ions:
--Copper(+) --Copper(+)
# Kcat_Value_[1/min]:
Not Available
# Specific_Activity_[micromol/min/mg]:
Not Available
# Km_Value_[mM]:
Not Available
# Substrates:
DNA
# Products:
Not Available
# Specific_Reaction:
Protein + DNA = Protein-DNA
# General_Reaction:
Not Available
# Inhibitor:
Not Available
# Priority:
6.6
# Status:
Selected, Cloned, Expressed, Soluble, Purified
# Availability:
NYSGXRC
#END_ECARDFILE
#BEGIN_ECARDFILE
# Entry_ID:
CC3651A.1
# Accession_No.:
UA0003651
# Name:
UPF0098 protein ybcL precursor
# Alternate_Names:
Not Available
# General_Function:
PEBP-like
# COG_Function:
Carbohydrate transport and metabolism (code G)
# COG_ID:
COG2814 Arabinose efflux permease (Evalue = 1e-106)
# Specific_Function:
Not Available
# Riley_Gene_Function:
DLP12 prophage; protein with phosphatidylethanolamine-binding domain; predicted kinase inhibitor
# Riley_Cell_Function:
>>>
extrachromosomal
Prophage genes and phage related functions
# Gene_Ontology:
>>>
Function: Not Available
||
>>>
Process: Not Available
||
>>>
Component: Not Available
# Location:
Periplasm
# Blattner_Number:
b0545
# Gene_Sequence:
ATGAAAACACTTATCGTTTCAACTGTATTGGCATTCATAACATTTTCTGCGCAGGCTGCAGCATTTCAGG
TCACTAGTAATGAAATAAAAACAGGAGAGCAACTTACAACGTCTCATGTCTTTTCTGGATTTGGGTGTGA
AGGTGGTAATACATCGCCCTCATTAACCTGGTCTGGTGTTCCTGAAGGTACCAAAAGCTTTGCCGTAACT
GTATATGATCCAGATGCACCTACAGGCAGTGGTTGGTGGCATTGGACTGTTGTTAATATTCCAGCAACAG
TAACATATTTGCCCGTTGATGCAGGGAGACGTGATGGAACAAAACTGCCGACTGGTGCTGTTCAAGGCCG
AAATGATTTTGGCTATGCTGGGTTTGGTGGCGCATGTCCTCCTAAAGGAGATAAACCACATCATTACCAG
TTTAAAGTATGGGCTCTAAAAACTGAAAAGATTCCTGTAGATTCTAACTCCAGCGGAGCGTTAGTTGGTT
ATATGCTTAATGCTAATAAAATCGCAACCGCTGAGATAACACCAGTTTATGAGATAAAGTAG
# Upstream_100_bases:
TACAATTGTGATTGCTTTTGCATGAACATTGCGCCTTTATGCATAATGAGATAAAGGAATATCAAATAAA
ATAACGATAGGTCATAACAAAGAGGTTTTT
# Blattner_No_Ontology:
Hypothetical, unclassified, unknown
# Gene_Position:
570116-570667 (Clockwise)
# Centisome_Position:
12.288
# Gene_Name:
ybcL
# GC_Content:
42.39%
# Metabolic_Importance:
Unknown
# Preceding_Gene:
ybcK
# Following_Gene:
ybcM
# Operon_Status:
Yes
# Operon_Components:
ybcL_ybcM Ref: RegulonDB http://kinich.cifn.unam.mx:8850/db/regulondb_cgi.query_simple?v_organism=ECK12&v_table=3&v_name=ybcL
# Paralogues:
b0773 (ybhB) 50;
# Copy Number:
Unknown
# RNA_Copy_No.:
Log phase (2max): 0.1
Stationary phase (2max): 0.11
Ref: Nature Biotech., 18, 1262-68, Dec. 2000 (PMID=11101804)
# Genbank_ID_(DNA):
G1786757
# Genbank_ID_(Protein):
AAC73646.1
# SWISS_PROT_(AC_&_ID):
$ YBCL_ECOLI (P77368)
# 2D_Gel_Image:
Not Available
# Other_Databases:
- ECOCYC: EG13628
- EcoGene: EG13628
- EMBL: U00096
- InterPro: IPR008914; IPR005247
- Pfam: PF01161
- PIR: G64786
# Pfam_Domain/Function:
PF01161 Phosphatidylethanolamine-binding protein;
# Homologues:
Not Available
# Similarity:
Belongs to the UPF0098 family.
# EC_Number:
Not Available
# No._of_Amino_Acids:
183 (Translated Protein)
164 (Mature Protein)
# Molecular_Weight:
19476 17453
# Theoretical_pI:
7.57
# Theoretical_pI (Mature):
6.94
# Sequence:
// MKTLIVSTVLAFITFSAQAAAFQVTSNEIKTGEQLTTSHVFSGFGCEGGNTSPSLTWSGV
// PEGTKSFAVTVYDPDAPTGSGWWHWTVVNIPATVTYLPVDAGRRDGTKLPTGAVQGRNDF
// GYAGFGGACPPKGDKPHHYQFKVWALKTEKIPVDSNSSGALVGYMLNANKIATAEITPVY
// EIK
// /\
// AAFQVTSNEIKTGEQLTTSHVFSGFGCEGGNTSPSLTWSGVPEGTKSFAVTVYDPDAPTG
// SGWWHWTVVNIPATVTYLPVDAGRRDGTKLPTGAVQGRNDFGYAGFGGACPPKGDKPHHY
// QFKVWALKTEKIPVDSNSSGALVGYMLNANKIATAEITPVYEIK
# PROSITE_Motif:
Not Available
# Important_Sites:
Not Available
# Transmembrane:
Not Available
# Cys/Met_Content:
1.1 %Cys (Translated Protein)
1.1 %Met (Translated Protein)
2.2 %Cys+Met (Translated Protein)
1.2 %Cys (Mature Protein)
0.6 %Met (Mature Protein)
1.8 %Cys+Met (Mature Protein)
# Secondary_Structure_(PDB):
EFQVTSNEIKTGEQLTTSHVFSGFGCEGGNTSPSLTWSGVPEGTKSFAVTV
CEEEEECCCCCCEEECEEEEEECCCCEEECCEEEEEEECCCCCEEEEEEEE
YDPDAPTGSGWWHWTVVNIPATVTYLPVDAGRRDGTKLPTGAVQGRNDFGY
EECCCCCCCCEEEEEEECCCCCCEEEECCCCCCCCCCCCCCEEEEEECCCE
AGFGGACPPKGDKPHHYQFKVWALKTEKIPVDSNSSGALVGYLNANKIATA
EEEEEECCCCCCCEEEEEEEEEEEECCCCCCCCCCHHHHHHCCCCCCEEEE
EITPVYEIKLE
EEEEEEEECCC
# PDB_Accession:
& 1FUX
# Resolution:
1.81 Angstroms
# Structure_CLASS:
Mainly Beta
# Quaternary_Structure:
Homodimeric A2 complex of ybcL
# Interacting_Partners:
Not Available
# Cofactors:
Not Available
# Metals_Ions:
Not Available
# Kcat_Value_[1/min]:
Not Available
# Specific_Activity_[micromol/min/mg]:
Not Available
# Km_Value_[mM]:
Not Available
# Substrates:
Not Available
# Products:
Not Available
# Specific_Reaction:
Not Available
# General_Reaction:
Not Available
# Inhibitor:
Not Available
# Priority:
0.0
# Status:
Selected
# Availability:
Midwest Center for Structural Genomics
#END_ECARDFILE
#BEGIN_ECARDFILE
# Entry_ID:
CC0739A.1
# Accession_No.:
UA0000739
# Name:
Anaerobic glycerol-3-phosphate dehydrogenase subunit A
# Alternate_Names:
G-3-P dehydrogenase
# General_Function:
Energy metabolism; FAD/NAD(P)-binding domain; FAD-linked reductases, C-terminal domain
# COG_Function:
Energy production and conversion (code C)
# COG_ID:
COG0578 Glycerol-3-phosphate dehydrogenase (Evalue = 0.0)
# Specific_Function:
Conversion of glycerol 3-phosphate to dihydroxyacetone. Uses fumarate or nitrate as electron acceptor.
# Riley_Gene_Function:
sn-glycerol-3-phosphate dehydrogenase FAD/NAD(P)-binding (anaerobic), large subunit
# Riley_Cell_Function:
>>>
Metabolism
Carbon compound utilization
Carbohydrates/Carbon compounds
Galactose degradation
||
>>>
Metabolism
Energy metabolism (carbon)
Anaerobic respiration
||
>>>
Metabolism
Energy production/transport
Electron donor
||
>>>
Metabolism
Central intermediary metabolism
Glycerol metabolism
||
>>>
Cell structure
Membrane
||
>>>
Location of gene products
Inner membrane
# Gene_Ontology:
>>>
Function: catalytic activity
Function: oxidoreductase activity
Function: oxidoreductase activity, acting on CH-OH group of donors
Function: glycerol-3-phosphate dehydrogenase activity
||
>>>
Function: catalytic activity
Function: oxidoreductase activity
||
>>>
Process: physiological process
Process: metabolism
Process: cellular metabolism
Process: alcohol metabolism
Process: polyol metabolism
Process: glycerol metabolism
Process: glycerol-3-phosphate metabolism
||
>>>
Process: cellular physiological process
Process: cellular metabolism
Process: alcohol metabolism
Process: polyol metabolism
Process: glycerol metabolism
Process: glycerol-3-phosphate metabolism
||
>>>
Process: cellular process
Process: cellular physiological process
Process: cellular metabolism
Process: alcohol metabolism
Process: polyol metabolism
Process: glycerol metabolism
Process: glycerol-3-phosphate metabolism
Process: physiological process
Process: metabolism
Process: cellular metabolism
Process: generation of precursor metabolites and energy
Process: electron transport
||
>>>
Process: cellular physiological process
Process: transport
Process: electron transport
||
>>>
Process: cellular metabolism
Process: generation of precursor metabolites and energy
Process: electron transport
||
>>>
Process: localization
Process: establishment of localization
Process: transport
Process: electron transport
||
>>>
Process: cellular process
Process: cellular physiological process
Process: transport
Process: electron transport
||
>>>
Process: cellular metabolism
Process: generation of precursor metabolites and energy
Process: electron transport
||
>>>
Component: protein complex
Component: unlocalized protein complex
Component: glycerol-3-phosphate dehydrogenase complex
# Location:
Loosely Bound To The Cytoplasm Membrane
# Blattner_Number:
b2241
# Gene_Sequence:
ATGAAAACTCGCGACTCGCAATCAAGTGACGTGATTATCATTGGCGGCGGCGCAACGGGAGCCGGGATTG
CCCGCGACTGTGCCCTGCGCGGGCTGCGCGTGATTTTGGTTGAGCGCCACGACATCGCAACCGGTGCCAC
CGGGCGTAACCACGGCCTGCTGCACAGCGGTGCGCGCTATGCGGTAACCGATGCGGAATCGGCCCGCGAA
TGCATTAGTGAAAACCAGATCCTGAAACGCATTGCACGTCACTGCGTTGAACCAACCAACGGCCTGTTTA
TCACCCTGCCGGAAGATGACCTCTCCTTCCAGGCCACTTTTATTCGCGCCTGCGAAGAAGCAGGGATCAG
CGCAGAAGCTATAGACCCGCAGCAAGCGCGCATTATCGAACCTGCCGTTAACCCGGCACTGATTGGCGCG
GTGAAAGTTCCGGATGGCACCGTTGATCCATTTCGTCTGACCGCAGCAAACATGCTGGATGCCAAAGAAC
ACGGTGCCGTTATCCTTACCGCTCATGAAGTCACGGGGCTGATTCGTGAAGGCGCGACGGTGTGCGGTGT
TCGTGTACGTAACCATCTCACCGGCGAAACTCAGGCCCTTCATGCACCTGTCGTGGTTAATGCCGCTGGG
ATCTGGGGGCAACACATTGCCGAATATGCCGATCTGCGCATTCGCATGTTCCCGGCGAAAGGATCGCTGC
TGATCATGGATCACCGCATTAACCAGCATGTGATCAACCGCTGCCGTAAACCTTCCGACGCCGATATTCT
GGTGCCTGGCGATACCATTTCGCTGATTGGTACCACCTCTTTACGTATTGATTACAACGAGATTGACGAT
AATCGAGTGACGGCAGAAGAGGTTGATATTCTGCTGCGTGAAGGGGAAAAACTGGCCCCCGTGATGGCGA
AAACGCGCATTTTGCGGGCCTATTCTGGCGTGCGCCCGCTGGTTGCCAGCGATGACGACCCGAGCGGACG
TAACGTCAGCCGTGGCATCGTGCTGCTCGACCATGCTGAACGCGATGGTCTGGACGGATTTATCACCATC
ACCGGTGGCAAACTGATGACCTATCGGCTGATGGCTGAATGGGCTACCGACGCGGTATGCCGCAAACTGG
GCAACACGCGCCCCTGTACGACTGCCGATCTGGCACTGCCTGGTTCACAAGAACCCGCTGAAGTTACCTT
GCGTAAAGTCATCTCCCTGCCTGCCCCGCTGCGCGGTTCTGCGGTTTATCGTCATGGCGATCGCACGCCT
GCCTGGCTGAGCGAAGGCCGTCTGCACCGTAGCCTGGTATGTGAGTGCGAAGCGGTAACTGCGGGTGAAG
TGCAGTACGCGGTAGAAAATTTAAACGTTAATAGCCTGCTGGATTTACGCCGTCGTACCCGTGTGGGGAT
GGGCACCTGCCAGGGCGAACTCTGCGCCTGCCGCGCTGCCGGACTGCTGCAACGTTTTAACGTCACGACG
TCCGCGCAATCTATCGAGCAACTTTCCACCTTCCTTAACGAACGCTGGAAAGGCGTGCAACCCATCGCCT
GGGGAGATGCACTGCGCGAAAGCGAATTTACCCGCTGGGTTTATCAGGGATTGTGTGGTCTGGAGAAGGA
GCAGAAAGATGCGCTTTGA
# Upstream_100_bases:
CACGTTTCACTTTCGAATTATGAGCGAATATGCGCGAAATCAAACAATTCATGTTTTTACTATGGCTAAA
TGGTAAAAAACGAACTTCAGAGGGATAACA
# Blattner_No_Ontology:
Energy metabolism
# Gene_Position:
2350669-2352297 (Clockwise)
# Centisome_Position:
50.665
# Gene_Name:
glpA
# GC_Content:
57.34%
# Metabolic_Importance:
Non_Essential
# Preceding_Gene:
glpT
# Following_Gene:
glpB
# Operon_Status:
Yes
# Operon_Components:
glpA_glpB_glpC Ref: RegulonDB http://kinich.cifn.unam.mx:8850/db/regulondb_cgi.query_simple?v_organism=ECK12&v_table=3&v_name=glpA
# Paralogues:
b3426 (glpD) 28;
# Copy Number:
Unknown
# RNA_Copy_No.:
Log phase (2max): 0.06
Stationary phase (2max): 0.1
Ref: Nature Biotech., 18, 1262-68, Dec. 2000 (PMID=11101804)
# Genbank_ID_(DNA):
G1788574
# Genbank_ID_(Protein):
AAC75301.1
# SWISS_PROT_(AC_&_ID):
$ GLPA_ECOLI (P0A9C0)
# 2D_Gel_Image:
Not Available
# Other_Databases:
- ECOCYC: EG10391
- EcoGene: EG10391
- EMBL: M20938
- InterPro: IPR007419; IPR000447; IPR006076; IPR000205
- Pfam: PF01266; PF04324
- PIR: A32006
- PRINTS: PR01001
- PROSITE: PS00977
# Pfam_Domain/Function:
PF01266 FAD dependent oxidoreductase; PF04324 BFD-like [2Fe-2S] binding domain;
# Homologues:
Organism=Homo sapiens, GI4504085, Length=727, Positives=41%, Blast Score=92.4
Organism=Caenorhabditis elegans, GI17565920, Length=673, Positives=42%, Blast Score=92.0
Organism=Caenorhabditis elegans, GI17509253, Length=722, Positives=41%, Blast Score=88.6
Organism=Mus musculus, GI31981769, Length=727, Positives=42%, Blast Score=97.8
Organism=Drosophila melanogaster, GI24653944, Length=724, Positives=43%, Blast Score=103
Organism=Drosophila melanogaster, GI24653942, Length=724, Positives=43%, Blast Score=103
Organism=Drosophila melanogaster, GI20130025, Length=724, Positives=43%, Blast Score=103
Organism=Drosophila melanogaster, GI24586295, Length=713, Positives=39%, Blast Score=65.9
# Similarity:
Belongs to the FAD-dependent glycerol-3-phosphate dehydrogenase family.
# EC_Number:
1.1.99.5
# No._of_Amino_Acids:
542 (Translated Protein)
542 (Mature Protein)
# Molecular_Weight:
58959 58959
# Theoretical_pI:
6.62
# Theoretical_pI (Mature):
6.62
# Sequence:
// MKTRDSQSSDVIIIGGGATGAGIARDCALRGLRVILVERHDIATGATGRNHGLLHSGARY
// AVTDAESARECISENQILKRIARHCVEPTNGLFITLPEDDLSFQATFIRACEEAGISAEA
// IDPQQARIIEPAVNPALIGAVKVPDGTVDPFRLTAANMLDAKEHGAVILTAHEVTGLIRE
// GATVCGVRVRNHLTGETQALHAPVVVNAAGIWGQHIAEYADLRIRMFPAKGSLLIMDHRI
// NQHVINRCRKPSDADILVPGDTISLIGTTSLRIDYNEIDDNRVTAEEVDILLREGEKLAP
// VMAKTRILRAYSGVRPLVASDDDPSGRNVSRGIVLLDHAERDGLDGFITITGGKLMTYRL
// MAEWATDAVCRKLGNTRPCTTADLALPGSQEPAEVTLRKVISLPAPLRGSAVYRHGDRTP
// AWLSEGRLHRSLVCECEAVTAGEVQYAVENLNVNSLLDLRRRTRVGMGTCQGELCACRAA
// GLLQRFNVTTSAQSIEQLSTFLNERWKGVQPIAWGDALRESEFTRWVYQGLCGLEKEQKD
// AL
// /\
// MKTRDSQSSDVIIIGGGATGAGIARDCALRGLRVILVERHDIATGATGRNHGLLHSGARY
// AVTDAESARECISENQILKRIARHCVEPTNGLFITLPEDDLSFQATFIRACEEAGISAEA
// IDPQQARIIEPAVNPALIGAVKVPDGTVDPFRLTAANMLDAKEHGAVILTAHEVTGLIRE
// GATVCGVRVRNHLTGETQALHAPVVVNAAGIWGQHIAEYADLRIRMFPAKGSLLIMDHRI
// NQHVINRCRKPSDADILVPGDTISLIGTTSLRIDYNEIDDNRVTAEEVDILLREGEKLAP
// VMAKTRILRAYSGVRPLVASDDDPSGRNVSRGIVLLDHAERDGLDGFITITGGKLMTYRL
// MAEWATDAVCRKLGNTRPCTTADLALPGSQEPAEVTLRKVISLPAPLRGSAVYRHGDRTP
// AWLSEGRLHRSLVCECEAVTAGEVQYAVENLNVNSLLDLRRRTRVGMGTCQGELCACRAA
// GLLQRFNVTTSAQSIEQLSTFLNERWKGVQPIAWGDALRESEFTRWVYQGLCGLEKEQKD
// AL
# PROSITE_Motif:
FAD_G3PDH_1; PATTERN. PS00977; FAD-dependent glycerol-3-phosphate dehydrogenase signature 1. [IV]-G-G-G-x(2)-G-[STACV]-G-x-A-x-D-x(3)-R-G. PDOC00753; //
FAD_G3PDH_2; PATTERN. PS00978; FAD-dependent glycerol-3-phosphate dehydrogenase signature 2. G-G-K-x(2)-[GSTE]-Y-R-x(2)-A. PDOC00753; //
# Important_Sites:
Not Available
# Transmembrane:
Not Available
# Cys/Met_Content:
2.6 %Cys (Translated Protein)
1.5 %Met (Translated Protein)
4.1 %Cys+Met (Translated Protein)
2.6 %Cys (Mature Protein)
1.5 %Met (Mature Protein)
4.1 %Cys+Met (Mature Protein)
# Secondary_Structure:
>GLPA_ECOLI (Translated Protein)
MKTRDSQSSDVIIIGGGATGAGIARDCALRGLRVILVERHDIATGATGRNHGLLHSGARY
CCCCCCCCCCEEEECCHHHHHHHHHHHHHCCCCEEEEECCCCCCCCCCCCCCCCCCCCCC
AVTDAESARECISENQILKRIARHCVEPTNGLFITLPEDDLSFQATFIRACEEAGISAEA
CCCHHHHHHHHHHHHHHHHHHCCHHECCCCEEEEEECHHHHHHHHHHHHHHHHCCCCCCC
IDPQQARIIEPAVNPALIGAVKVPDGTVDPFRLTAANMLDAKEHGAVILTAHEVTGLIRE
CCHHHHHHHCCCCCCCEEEEEEECCCEECHHHHHHHHHHHHHHCCCEEECCCEEEEEEEE
GATVCGVRVRNHLTGETQALHAPVVVNAAGIWGQHIAEYADLRIRMFPAKGSLLIMDHRI
CCEEEEEEEEECCCCCEEEEECCEEEECCCHHHHHHHHHCCCCCCCCCCEEEEEECCCCC
NQHVINRCRKPSDADILVPGDTISLIGTTSLRIDYNEIDDNRVTAEEVDILLREGEKLAP
CCCCCCCCCCCCCEEEEECCCCEEEEECCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHCC
VMAKTRILRAYSGVRPLVASDDDPSGRNVSRGIVLLDHAERDGLDGFITITGGKLMTYRL
CCCCCCEEEEEEEEECCCCCCCCCCCCCCCCCEEEEEEEEECCCCCCEEEECCCHHCCHH
MAEWATDAVCRKLGNTRPCTTADLALPGSQEPAEVTLRKVISLPAPLRGSAVYRHGDRTP
HHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCHHHHHHHCCCHHHHHHHHHCCCCCCCH
AWLSEGRLHRSLVCECEAVTAGEVQYAVENLNVNSLLDLRRRTRVGMGTCQGELCACRAA
HHHHCCCCCCCCEECCCCCCHHHHHHHHHHCCCCCHHHHHHHHHHCCCCCHHHHHHHHHH
GLLQRFNVTTSAQSIEQLSTFLNERWKGVQPIAWGDALRESEFTRWVYQGLCGLEKEQKD
HHHHHHCCCCHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHCCCHHHCC
AL
CC
/\
>GLPA_ECOLI (Mature Protein)
MKTRDSQSSDVIIIGGGATGAGIARDCALRGLRVILVERHDIATGATGRNHGLLHSGARY
CCCCCCCCCCEEEECCHHHHHHHHHHHHHCCCCEEEEECCCCCCCCCCCCCCCCCCCCCC
AVTDAESARECISENQILKRIARHCVEPTNGLFITLPEDDLSFQATFIRACEEAGISAEA
CCCHHHHHHHHHHHHHHHHHHCCHHECCCCEEEEEECHHHHHHHHHHHHHHHHCCCCCCC
IDPQQARIIEPAVNPALIGAVKVPDGTVDPFRLTAANMLDAKEHGAVILTAHEVTGLIRE
CCHHHHHHHCCCCCCCEEEEEEECCCEECHHHHHHHHHHHHHHCCCEEECCCEEEEEEEE
GATVCGVRVRNHLTGETQALHAPVVVNAAGIWGQHIAEYADLRIRMFPAKGSLLIMDHRI
CCEEEEEEEEECCCCCEEEEECCEEEECCCHHHHHHHHHCCCCCCCCCCEEEEEECCCCC
NQHVINRCRKPSDADILVPGDTISLIGTTSLRIDYNEIDDNRVTAEEVDILLREGEKLAP
CCCCCCCCCCCCCEEEEECCCCEEEEECCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHCC
VMAKTRILRAYSGVRPLVASDDDPSGRNVSRGIVLLDHAERDGLDGFITITGGKLMTYRL
CCCCCCEEEEEEEEECCCCCCCCCCCCCCCCCEEEEEEEEECCCCCCEEEECCCHHCCHH
MAEWATDAVCRKLGNTRPCTTADLALPGSQEPAEVTLRKVISLPAPLRGSAVYRHGDRTP
HHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCHHHHHHHCCCHHHHHHHHHCCCCCCCH
AWLSEGRLHRSLVCECEAVTAGEVQYAVENLNVNSLLDLRRRTRVGMGTCQGELCACRAA
HHHHCCCCCCCCEECCCCCCHHHHHHHHHHCCCCCHHHHHHHHHHCCCCCHHHHHHHHHH
GLLQRFNVTTSAQSIEQLSTFLNERWKGVQPIAWGDALRESEFTRWVYQGLCGLEKEQKD
HHHHHHCCCCHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHCCCHHHCC
AL
CC
# PDB_Accession:
& Not Available
# Resolution:
Not Available
# Structure_CLASS:
Alpha Beta
# Quaternary_Structure:
heterotrimeric ABC complex of glpA and glpB and glpC
# Interacting_Partners:
1) glpB, 2) glpC,
# Cofactors:
--FAD
# Metals_Ions:
--Ca2+ --iron
# Kcat_Value_[1/min]:
Not Available
# Specific_Activity_[micromol/min/mg]:
Not Available
# Km_Value_[mM]:
Not Available
# Substrates:
Glycerol 3-phosphate + Ubiquinone-8
# Products:
Dihydroxyacetone phosphate + Ubiquinol-8
# Specific_Reaction:
Glycerol 3-phosphate + Ubiquinone-8 --> Dihydroxyacetone phosphate + Ubiquinol-8
# General_Reaction:
Redox reaction;
# Inhibitor:
--1,10-phenanthroline --Cu2+ --D-2-phosphoglyceric acid --D-3-phosphoglyceric acid --dihydroxyacetone phosphate --DTNB --FMN --K3PO4 --NEM --PCMB --phosphoenolpyruvate --phosphoglycolic acid --Zn2+
# Priority:
6.2
# Status:
Selected
# Availability:
Montreal-Kingston Bacterial Structural Genomics Initiative
#END_ECARDFILE
#BEGIN_ECARDFILE
# Entry_ID:
CC3242A.1
# Accession_No.:
UA0003242
# Name:
Phenylacetic acid degradation protein paaB
# Alternate_Names:
Not Available
# General_Function:
Unknown
# COG_Function:
Secondary metabolites biosynthesis, transport and catabolism (code Q)
# COG_ID:
COG3460 Uncharacterized enzyme of phenylacetate metabolism (Evalue = 4e-52)
# Specific_Function:
May be part of a multicomponent oxygenase involved in phenylacetyl-CoA hydroxylation.
# Riley_Gene_Function:
predicted multicomponent oxygenase/reductase subunit for phenylacetic acid degradation
# Riley_Cell_Function:
>>>
Metabolism
Carbon compound utilization
Others
Phenylacetic acid degradation
# Gene_Ontology:
>>>
Function: Not Available
||
>>>
Process: Not Available
||
>>>
Component: Not Available
# Location:
Cytoplasm
# Blattner_Number:
b1389
# Gene_Sequence:
ATGAGTAATGTTTACTGGCCGTTATACGAAGTTTTCGTGCGTGGCAAACAGGGCTTATCACACCGCCATG
TTGGCAGTTTACATGCTGCCGATGAGCGGATGGCACTGGAAAATGCCCGTGATGCTTACACCCGTCGTAG
CGAAGGATGTTCAATTTGGGTGGTGAAGGCGAGTGAAATTGTTGCCTCGCAACCGGAAGAACGCGGTGAA
TTTTTTGATCCGGCTGAAAGCAAGGTCTATCGCCATCCAACGTTTTACACCATCCCTGATGGCATTGAGC
ACATGTGA
# Upstream_100_bases:
CCAAACGTAAAGCCTGGGAAGAAGGTACCTGGGTACGGGAAGCAGCGCTGGCCCATGCACAAAAACAACA
TGCCCGTAAGGTCGCATAAGGAGATTCAAA
# Blattner_No_Ontology:
Hypothetical, unclassified, unknown
# Gene_Position:
1452892-1453179 (Clockwise)
# Centisome_Position:
31.315
# Gene_Name:
paaB
# GC_Content:
49.65%
# Metabolic_Importance:
Unknown
# Preceding_Gene:
paaA
# Following_Gene:
paaC
# Operon_Status:
Yes
# Operon_Components:
paaA_paaB_paaC_paaD_paaE_paaF_paaG_paaH_paaI_paaJ_paaK Ref: RegulonDB http://kinich.cifn.unam.mx:8850/db/regulondb_cgi.query_simple?v_organism=ECK12&v_table=3&v_name=paaB
# Paralogues:
None
# Copy Number:
Unknown
# RNA_Copy_No.:
Log phase (2max): 0.15
Stationary phase (2max): 0.14
Ref: Nature Biotech., 18, 1262-68, Dec. 2000 (PMID=11101804)
# Genbank_ID_(DNA):
G1787655
# Genbank_ID_(Protein):
AAC74471.1
# SWISS_PROT_(AC_&_ID):
$ PAAB_ECOLI (P76078)
# 2D_Gel_Image:
Not Available
# Other_Databases:
- ECOCYC: EG14299
- EcoGene: EG14299
- EMBL: X97452
- InterPro: IPR009359
- Pfam: PF06243
- PIR: H64889
# Pfam_Domain/Function:
PF06243 Phenylacetic acid degradation B;
# Homologues:
Not Available
# Similarity:
Not Available
# EC_Number:
Not Available
# No._of_Amino_Acids:
95 (Translated Protein)
66 (Mature Protein)
# Molecular_Weight:
10942 7591
# Theoretical_pI:
6.34
# Theoretical_pI (Mature):
4.58
# Sequence:
// MSNVYWPLYEVFVRGKQGLSHRHVGSLHAADERMALENARDAYTRRSEGCSIWVVKASEI
// VASQPEERGEFFDPAESKVYRHPTFYTIPDGIEHM
// /\
// ADERMALENARDAYTRRSEGCSIWVVKASEIVASQPEERGEFFDPAESKVYRHPTFYTIP
// DGIEHM
# PROSITE_Motif:
Not Available
# Important_Sites:
Not Available
# Transmembrane:
Not Available
# Cys/Met_Content:
1.1 %Cys (Translated Protein)
3.2 %Met (Translated Protein)
4.2 %Cys+Met (Translated Protein)
1.5 %Cys (Mature Protein)
3.0 %Met (Mature Protein)
4.5 %Cys+Met (Mature Protein)
# Secondary_Structure:
>PAAB_ECOLI (Translated Protein)
MSNVYWPLYEVFVRGKQGLSHRHVGSLHAADERMALENARDAYTRRSEGCSIWVVKASEI
CCCCCCCCEEEEEECCCCCCHHHEEEECCCCHHHHHHHHHHHHCCCCCCCEEEEEEECCE
VASQPEERGEFFDPAESKVYRHPTFYTIPDGIEHM
EECCHHHHHCCCCHHHCCEECCCCCCCCCCCCCCC
/\
>PAAB_ECOLI (Mature Protein)
SNVYWPLYEVFVRGKQGLSHRHVGSLHAADERMALENARDAYTRRSEGCSIWVVKASEIV
CCCCCCCEEEEEECCCCCCHHHEEEECCCCHHHHHHHHHHHHCCCCCCCEEEEEEECCEE
ASQPEERGEFFDPAESKVYRHPTFYTIPDGIEHM
ECCHHHHHCCCCHHHCCEECCCCCCCCCCCCCCC
# PDB_Accession:
& Not Available
# Resolution:
Not Available
# Structure_CLASS:
Alpha Beta
# Quaternary_Structure:
heteromultimer; putative phenylacetate-CoA oxygenase
# Interacting_Partners:
Unknown
# Cofactors:
Not Available
# Metals_Ions:
Not Available
# Kcat_Value_[1/min]:
Not Available
# Specific_Activity_[micromol/min/mg]:
Not Available
# Km_Value_[mM]:
Not Available
# Substrates:
Not Available
# Products:
Not Available
# Specific_Reaction:
Not Available
# General_Reaction:
Not Available
# Inhibitor:
Not Available
# Priority:
9.4
# Status:
Selected, Cloned, Expressed, Soluble
# Availability:
Montreal-Kingston Bacterial Structural Genomics Initiative
#END_ECARDFILE
#BEGIN_ECARDFILE
# Entry_ID:
CC2881A.1
# Accession_No.:
UA0002881
# Name:
Membrane-bound lytic murein transglycosylase C precursor
# Alternate_Names:
Murein hydrolase C
# General_Function:
Cell envelope; Lysozyme-like
# COG_Function:
Cell wall/membrane/envelope biogenesis (code M)
# COG_ID:
COG0741 Soluble lytic murein transglycosylase and related regulatory proteins (some contain LysM/invasin domains) (Evalue = 0.0)
# Specific_Function:
Murein-degrading enzyme. May play a role in recycling of muropeptides during cell elongation and/or cell division (By similarity).
# Riley_Gene_Function:
lytic murein transglycosylase C, membrane-bound
# Riley_Cell_Function:
>>>
Metabolism
Macromolecules (cellular constituent) biosynthesis
Peptidoglycan (murein)
||
>>>
Cell structure
Membrane
||
>>>
Cell structure
Peptidoglycan (murein)
||
>>>
Location of gene products
Inner membrane
# Gene_Ontology:
>>>
Function: catalytic activity
||
>>>
Process: physiological process
Process: metabolism
Process: cellular metabolism
Process: aromatic compound metabolism
||
>>>
Process: cellular physiological process
Process: cellular metabolism
Process: aromatic compound metabolism
||
>>>
Process: cellular process
Process: cellular physiological process
Process: cellular metabolism
Process: aromatic compound metabolism
||
>>>
Component: Not Available
# Location:
Attached To The Membrane By A Lipid Anchor
# Blattner_Number:
b2963
# Gene_Sequence:
ATGAAAAAATATCTCGCGCTGGCTTTGATTGCGCCGTTGCTCATCTCCTGTTCGACGACCAAAAAAGGCG
ATACCTATAACGAAGCCTGGGTCAAAGATACCAACGGTTTTGATATTCTGATGGGGCAATTTGCCCACAA
TATTGAGAACATCTGGGGCTTCAAAGAGGTGGTGATCGCTGGTCCTAAGGACTACGTGAAATACACCGAT
CAATATCAGACCCGCAGCCACATCAACTTCGATGACGGTACGATTACTATCGAAACCATCGCCGGGACAG
AACCTGCCGCGCATTTGCGCCGGGCAATTATCAAAACGTTATTGATGGGTGACGATCCGAGTTCGGTCGA
TCTCTATTCCGACGTTGATGATATTACGATTTCGAAAGAACCTTTCCTTTACGGTCAGGTGGTGGACAAC
ACCGGGCAGCCGATTCGCTGGGAAGGTCGCGCAAGCAACTTCGCGGATTATCTGCTGAAAAACCGTCTGA
AGAGCCGCAGCAACGGGCTGCGTATCATCTACAGCGTCACCATTAACATGGTGCCGAACCACCTTGATAA
ACGTGCGCACAAATATCTCGGCATGGTCCGCCAGGCGTCACGGAAATATGGCGTTGATGAGTCGCTGATT
CTGGCAATTATGCAGACCGAATCTTCCTTTAACCCGTATGCGGTCAGCCGTTCCGATGCGCTGGGATTAA
TGCAGGTGGTACAACATACTGCCGGGAAAGATGTGTTCCGCTCGCAGGGGAAATCCGGCACGCCGAGCCG
CAGTTTCTTGTTTGATCCTGCCAGCAATATTGATACCGGCACCGCGTATCTGGCGATGCTGAACAATGTT
TATCTCGGCGGAATTGATAACCCAACATCGCGGCGTTATGCCGTCATCACCGCCTATAACGGCGGCGCAG
GCAGCGTGCTGCGAGTCTTTTCGAATGATAAGATTCAGGCTGCCAATATTATTAACACCATGACGCCGGG
CGATGTTTATCAGACGCTGACGACCCGCCATCCCTCTGCGGAATCTCGCCGTTATCTTTATAAAGTGAAT
ACCGCGCAAAAATCCTACCGCCGCCGATAA
# Upstream_100_bases:
CATATCGAGGGCTATACGCCGGAAGATAAAAAATAAAAACAGTGCCGGAGCACGCCTCCGGCAACTTGCA
TAAAAACAAACACAACACGCACCCGGAATG
# Blattner_No_Ontology:
Hypothetical, unclassified, unknown
# Gene_Position:
3102455-3103534 (Clockwise)
# Centisome_Position:
66.868
# Gene_Name:
mltC
# GC_Content:
51.11%
# Metabolic_Importance:
Non_Essential
# Preceding_Gene:
yggX
# Following_Gene:
nupG
# Operon_Status:
No
# Operon_Components:
None
# Paralogues:
None
# Copy Number:
Unknown
# RNA_Copy_No.:
Log phase (2max): 0.78
Stationary phase (2max): 2.59
Ref: Nature Biotech., 18, 1262-68, Dec. 2000 (PMID=11101804)
# Genbank_ID_(DNA):
G2367180
# Genbank_ID_(Protein):
AAC76000.1
# SWISS_PROT_(AC_&_ID):
$ MLTC_ECOLI (P0C066)
# 2D_Gel_Image:
Not Available
# Other_Databases:
- ECOCYC: EG12986
- EcoGene: EG12986
- EMBL: U28377
- InterPro: IPR000627; IPR008258; IPR000189
- Pfam: PF01464
- PROSITE: PS00013
# Pfam_Domain/Function:
PF01464 Transglycosylase SLT domain
# Homologues:
Not Available
# Similarity:
Belongs to the transglycosylase slt family.
# EC_Number:
3.2.1.-
# No._of_Amino_Acids:
359 (Translated Protein)
336 (Mature Protein)
# Molecular_Weight:
40113 37667
# Theoretical_pI:
9.69
# Theoretical_pI (Mature):
9.44
# Sequence:
// MKKYLALALIAPLLISCSTTKKGDTYNEAWVKDTNGFDILMGQFAHNIENIWGFKEVVIA
// GPKDYVKYTDQYQTRSHINFDDGTITIETIAGTEPAAHLRRAIIKTLLMGDDPSSVDLYS
// DVDDITISKEPFLYGQVVDNTGQPIRWEGRASNFADYLLKNRLKSRSNGLRIIYSVTINM
// VPNHLDKRAHKYLGMVRQASRKYGVDESLILAIMQTESSFNPYAVSRSDALGLMQVVQHT
// AGKDVFRSQGKSGTPSRSFLFDPASNIDTGTAYLAMLNNVYLGGIDNPTSRRYAVITAYN
// GGAGSVLRVFSNDKIQAANIINTMTPGDVYQTLTTRHPSAESRRYLYKVNTAQKSYRRR
// /\
// DTYNEAWVKDTNGFDILMGQFAHNIENIWGFKEVVIAGPKDYVKYTDQYQTRSHINFDDG
// TITIETIAGTEPAAHLRRAIIKTLLMGDDPSSVDLYSDVDDITISKEPFLYGQVVDNTGQ
// PIRWEGRASNFADYLLKNRLKSRSNGLRIIYSVTINMVPNHLDKRAHKYLGMVRQASRKY
// GVDESLILAIMQTESSFNPYAVSRSDALGLMQVVQHTAGKDVFRSQGKSGTPSRSFLFDP
// ASNIDTGTAYLAMLNNVYLGGIDNPTSRRYAVITAYNGGAGSVLRVFSNDKIQAANIINT
// MTPGDVYQTLTTRHPSAESRRYLYKVNTAQKSYRRR
# PROSITE_Motif:
PROKAR_LIPOPROTEIN; RULE. PS00013; Prokaryotic membrane lipoprotein lipid attachment site. {DERK}(6)-[LIVMFWSTAG](2)-[LIVMFYSTAGCQ]-[AGS]-C. Additional rules:RU (1) The sequence must start with Met.RU (2) The cysteine must be between positions 15 and 35 of the sequence inRU consideration.RU (3) There must be at least one charged residue (Lys or Arg) in the firstRU seven residues of the sequence. PDOC00013; //
TRANSGLYCOSYLASE; PATTERN. PS00922; Prokaryotic transglycosylases signature. [LIVM]-x(3)-E-S-x(3)-[AP]-x(3)-S-x(5)-G-[LIVM]-[LIVMFYW]-x-[LIVMFYW]-PA x(4)-[SAG]. PDOC00713; //
# Important_Sites:
Signal Chain 1 16
LIPID Site 17 17 N-ACYL DIGLYCERIDE (Potential)
# Transmembrane:
Not Available
# Cys/Met_Content:
0.3 %Cys (Translated Protein)
2.5 %Met (Translated Protein)
2.8 %Cys+Met (Translated Protein)
0.0 %Cys (Mature Protein)
2.4 %Met (Mature Protein)
2.4 %Cys+Met (Mature Protein)
# Secondary_Structure:
>MLTC_ECOLI (Translated Protein)
MKKYLALALIAPLLISCSTTKKGDTYNEAWVKDTNGFDILMGQFAHNIENIWGFKEVVIA
CCHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHHHHCCCHHHHCCCEEEEEE
GPKDYVKYTDQYQTRSHINFDDGTITIETIAGTEPAAHLRRAIIKTLLMGDDPSSVDLYS
CCCCEEEEECCCCEEEEEEECCCEEEEEECCCCCHHHHHHHHHHHHEECCCCCCCEEEEE
DVDDITISKEPFLYGQVVDNTGQPIRWEGRASNFADYLLKNRLKSRSNGLRIIYSVTINM
CCCCEEECCCCHHHHHHHHCCCCCCHHHHHHHHHHHHHHHCCCCCCCCCCEEEEEEEEEE
VPNHLDKRAHKYLGMVRQASRKYGVDESLILAIMQTESSFNPYAVSRSDALGLMQVVQHT
HHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHCCCCCCEECCCCEEEEEECCCC
AGKDVFRSQGKSGTPSRSFLFDPASNIDTGTAYLAMLNNVYLGGIDNPTSRRYAVITAYN
CCCHHHHHHCCCCCCCHHHHHCHHHHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHH
GGAGSVLRVFSNDKIQAANIINTMTPGDVYQTLTTRHPSAESRRYLYKVNTAQKSYRRR
CCHHHHHHHHHCCCCCCCCCCCCCCCCHHHHHHHHCCCCHHHHHHHHHHHHHHHHHCCC
/\
>MLTC_ECOLI (Mature Protein)
CSTTKKGDTYNEAWVKDTNGFDILMGQFAHNIENIWGFKEVVIAGPKDYVKYTDQYQTRS
CCCCCCCCCCCHHHHHHHHHHHHHHHHHCCCHHHHCCCEEEEEECCCCEEEEECCCCEEE
HINFDDGTITIETIAGTEPAAHLRRAIIKTLLMGDDPSSVDLYSDVDDITISKEPFLYGQ
EEEECCCEEEEEECCCCCHHHHHHHHHHHHEECCCCCCCEEEEECCCCEEECCCCHHHHH
VVDNTGQPIRWEGRASNFADYLLKNRLKSRSNGLRIIYSVTINMVPNHLDKRAHKYLGMV
HHHCCCCCCHHHHHHHHHHHHHHHCCCCCCCCCCEEEEEEEEEEHHHHHHHHHHHHHHHH
RQASRKYGVDESLILAIMQTESSFNPYAVSRSDALGLMQVVQHTAGKDVFRSQGKSGTPS
HHHHHHCCCCHHHHHHHHHHHHCCCCCCEECCCCEEEEEECCCCCCCHHHHHHCCCCCCC
RSFLFDPASNIDTGTAYLAMLNNVYLGGIDNPTSRRYAVITAYNGGAGSVLRVFSNDKIQ
HHHHHCHHHHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHCCHHHHHHHHHCCCCC
AANIINTMTPGDVYQTLTTRHPSAESRRYLYKVNTAQKSYRRR
CCCCCCCCCCCHHHHHHHHCCCCHHHHHHHHHHHHHHHHHCCC
# PDB_Accession:
& Not Available
# Resolution:
Not Available
# Structure_CLASS:
Alpha Beta
# Quaternary_Structure:
Not Available
# Interacting_Partners:
Unknown
# Cofactors:
Not Available
# Metals_Ions:
Not Available
# Kcat_Value_[1/min]:
Not Available
# Specific_Activity_[micromol/min/mg]:
Not Available
# Km_Value_[mM]:
Not Available
# Substrates:
Muramic Acid
# Products:
N-Acetylmuramic Acid Residues + N-Acetylglucosamine Residues
# Specific_Reaction:
Cleavage Of The Beta-1,4-Glycosidic Bond Between N-Acetylmuramic Acid And N-Acetylglucosamine Residues, Thereby Conserving The Energy In A Newly Synthesized 1,6-Anhydrobond In The Muramic Acid Residue.
# General_Reaction:
Cleavage Of The Beta-1,4-Glycosidic Bond
# Inhibitor:
Not Available
# Priority:
3.7
# Status:
Not Available
# Availability:
Not Available
#END_ECARDFILE
#BEGIN_ECARDFILE
# Entry_ID:
CC3449A.1
# Accession_No.:
UA0003449
# Name:
Hypothetical protein yfaU
# Alternate_Names:
Not Available
# General_Function:
Phosphoenolpyruvate/pyruvate domain
# COG_Function:
Carbohydrate transport and metabolism (code G)
# COG_ID:
COG3836 2,4-dihydroxyhept-2-ene-1,7-dioic acid aldolase (Evalue = 1e-150)
# Specific_Function:
Not Available
# Riley_Gene_Function:
putative 2,4-dihydroxyhept-2-ene-1,7-dioic acid aldolase
# Riley_Cell_Function:
>>>
Metabolism
Central intermediary metabolism
Unassigned reversible reactions
# Gene_Ontology:
>>>
Function: catalytic activity
Function: lyase activity
Function: carbon-carbon lyase activity
||
>>>
Process: physiological process
Process: metabolism
Process: cellular metabolism
Process: aromatic compound metabolism
||
>>>
Process: cellular physiological process
Process: cellular metabolism
Process: aromatic compound metabolism
||
>>>
Process: cellular process
Process: cellular physiological process
Process: cellular metabolism
Process: aromatic compound metabolism
||
>>>
Component: Not Available
# Location:
Not Available
# Blattner_Number:
b2245
# Gene_Sequence:
ATGAACGCATTATTAAGCAATCCCTTTAAAGAACGTTTACGCAAGGGCGAAGTGCAAATTGGTCTGTGGT
TAAGCTCAACGACTGCCTATATGGCAGAAATTGCCGCCACTTCTGGTTATGACTGGTTGCTGATTGACGG
GGAGCACGCGCCAAACACCATTCAGGATCTTTATCATCAGCTACAGGCGGTAGCGCCCTATGCCAGCCAA
CCCGTGATCCGTCCGGTGGAAGGCAGTAAACCGCTGATTAAACAAGTCCTGGATATTGGCGCGCAAACTC
TACTGATCCCGATGGTCGATACTGCCGAACAGGCACGTCAGGTGGTGTCTGCCACGCGCTATCCTCCCTA
CGGTGAGCGTGGTGTCGGGGCCAGTGTGGCACGGGCTGCGCGCTGGGGACGCATTGAGAATTACATGGCG
CAAGTTAACGATTCGCTTTGTCTGTTGGTGCAGGTGGAAAGTAAAACGGCACTGGATAACCTGGACGAAA
TCCTCGACGTCGAAGGGATTGATGGCGTGTTTATTGGACCTGCGGATCTTTCTGCGTCGTTGGGCTACCC
GGATAACGCCGGGCACCCGGAAGTGCAGCGAATTATTGAAACCAGTATTCGGCGGATCCGTGCTGCGGGT
AAAGCGGCTGGTTTTCTGGCTGTGGCTCCTGATATGGCGCAGCAATGCCTGGCGTGGGGAGCGAACTTTG
TCGCTGTTGGCGTTGACACGATGCTCTACAGCGATGCCCTGGATCAACGACTGGCGATGTTTAAATCAGG
CAAAAATGGGCCACGCATAAAAGGTAGTTATTGA
# Upstream_100_bases:
CGGTGGCGGTCATCGGTTCGCTGATTATTTTCACTCTGCGTGTAAATCGCACTGTTGCGCAGACCGACGT
GGCACATCATTAAATAGGTTAAGGAACACG
# Blattner_No_Ontology:
Hypothetical, unclassified, unknown
# Gene_Position:
2356064-2356867 (Counter Clockwise)
# Centisome_Position:
50.798
# Gene_Name:
yfaU
# GC_Content:
53.61%
# Metabolic_Importance:
Unknown
# Preceding_Gene:
yfaD
# Following_Gene:
yfaV
# Operon_Status:
Yes
# Operon_Components:
yfaU_yfaV Ref: RegulonDB http://kinich.cifn.unam.mx:8850/db/regulondb_cgi.query_simple?v_organism=ECK12&v_table=3&v_name=yfaU
# Paralogues:
b3126 (garL) 43;
# Copy Number:
Not Available
# RNA_Copy_No.:
Not Available
# Genbank_ID_(DNA):
D90856
# Genbank_ID_(Protein):
BAA16069.1
# SWISS_PROT_(AC_&_ID):
$ YFAU_ECOLI (P76469)
# 2D_Gel_Image:
Not Available
# Other_Databases:
- ECOCYC: EG14083
- EcoGene: EG14083
- EMBL: U00096
- InterPro: IPR005000
- Pfam: PF03328
- PIR: C64995
# Pfam_Domain/Function:
PF03328 HpcH/HpaI aldolase/citrate lyase family;
# Homologues:
Not Available
# Similarity:
Belongs to the hpcH/hpaI aldolase family.
# EC_Number:
Not Available
# No._of_Amino_Acids:
267 (Translated Protein)
236 (Mature Protein)
# Molecular_Weight:
28916 25379
# Theoretical_pI:
5.11
# Theoretical_pI (Mature):
4.75
# Sequence:
// MNALLSNPFKERLRKGEVQIGLWLSSTTAYMAEIAATSGYDWLLIDGEHAPNTIQDLYHQ
// LQAVAPYASQPVIRPVEGSKPLIKQVLDIGAQTLLIPMVDTAEQARQVVSATRYPPYGER
// GVGASVARAARWGRIENYMAQVNDSLCLLVQVESKTALDNLDEILDVEGIDGVFIGPADL
// SASLGYPDNAGHPEVQRIIETSIRRIRAAGKAAGFLAVAPDMAQQCLAWGANFVAVGVDT
// MLYSDALDQRLAMFKSGKNGPRIKGSY
// /\
// AEIAATSGYDWLLIDGEHAPNTIQDLYHQLQAVAPYASQPVIRPVEGSKPLIKQVLDIGA
// QTLLIPMVDTAEQARQVVSATRYPPYGERGVGASVARAARWGRIENYMAQVNDSLCLLVQ
// VESKTALDNLDEILDVEGIDGVFIGPADLSASLGYPDNAGHPEVQRIIETSIRRIRAAGK
// AAGFLAVAPDMAQQCLAWGANFVAVGVDTMLYSDALDQRLAMFKSGKNGPRIKGSY
# PROSITE_Motif:
Hypothetical hesB/yadR/yfhF family signature.
F-x-[LIVMFY]-x-N-[PG]-[NSKQ]-x(4)-C-x-C-[GS]-x-S-F.
# Important_Sites:
Not Available
# Transmembrane:
Not Available
# Cys/Met_Content:
0.7 %Cys (Translated Protein)
2.6 %Met (Translated Protein)
3.4 %Cys+Met (Translated Protein)
0.8 %Cys (Mature Protein)
2.1 %Met (Mature Protein)
3.0 %Cys+Met (Mature Protein)
# Secondary_Structure_(PDB):
DVFPNKFKAALAAKQVQIGCWSALSNPISTEVLGLAGFDWLVLDGEHAPND
CCCCHHHHHHHHHCEEEEEEEECCCCHHHHHHHHHCCCEEEEEEECCCCCC
ISTFIPQLALKGSASAPVVRVPTNEPVIIKRLLDIGFYNFLIPFVETKEEA
HHHHHHHCCCCCCCEEEEEEECCCCHHHHHHHHHHCCEEEEEECCCCHHHH
ELAVASTRYPPEGIRGVSVSHRANFGTVADYFAQSNKNITILVQIESQQGV
HHHHHHEEECCCCCCCCCCCEEECCCCCCCHHHHHCCCEEEEEEECCHHHH
DNVDAIAATEGVDGIFVGPSDLAAALGHLGNASHPDVQKAIQHIFNRASAH
HHHHHHHHCCCCEEEEEEHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHH
GKPSGILAPVEADARRYLEWGATFVAVGSDLGVFRSATQKLADTFKK
CEEEEEEECCHHHHHHHHHHCCEEEEEEEHHHHHHHHHHHHHHHCCC
# PDB_Accession:
& Model Based on 1DXF (3-256)
# Resolution:
Not Available
# Structure_CLASS:
Alpha Beta
# Quaternary_Structure:
Not Available
# Interacting_Partners:
Not Available
# Cofactors:
Not Available
# Metals_Ions:
Not Available
# Kcat_Value_[1/min]:
Not Available
# Specific_Activity_[micromol/min/mg]:
Not Available
# Km_Value_[mM]:
Not Available
# Substrates:
Not Available
# Products:
Not Available
# Specific_Reaction:
Not Available
# General_Reaction:
Not Available
# Inhibitor:
Not Available
# Priority:
1.0
# Status:
Not Available
# Availability:
Not Available
#END_ECARDFILE
#BEGIN_ECARDFILE
# Entry_ID:
CC0727A.1
# Accession_No.:
UA0000727
# Name:
Biotin synthase
# Alternate_Names:
Biotin synthetase
# General_Function:
Biosynthesis of cofactors, prosthetic groups, and carriers
# COG_Function:
Coenzyme transport and metabolism (code H)
# COG_ID:
COG0502 Biotin synthase and related enzymes (Evalue = 0.0)
# Specific_Function:
Not Available
# Riley_Gene_Function:
biotin synthetase
# Riley_Cell_Function:
>>>
Metabolism
Building block biosynthesis
Cofactor, small molecule carrier
Biotin
# Gene_Ontology:
>>>
Function: catalytic activity
Function: transferase activity
Function: transferase activity, transferring sulfur-containing groups
Function: sulfurtransferase activity
Function: biotin synthase activity
||
>>>
Function: catalytic activity
Function: transferase activity
Function: transferase activity, transferring sulfur-containing groups
Function: sulfurtransferase activity
Function: biotin synthase activity
||
>>>
Function: catalytic activity
||
>>>
Process: physiological process
Process: metabolism
Process: biosynthesis
Process: cellular biosynthesis
Process: vitamin biosynthesis
Process: water-soluble vitamin biosynthesis
Process: biotin biosynthesis
||
>>>
Process: sulfur compound biosynthesis
Process: biotin biosynthesis
||
>>>
Process: cellular metabolism
Process: organic acid metabolism
Process: carboxylic acid metabolism
Process: biotin metabolism
Process: biotin biosynthesis
||
>>>
Process: vitamin metabolism
Process: water-soluble vitamin metabolism
Process: biotin metabolism
Process: biotin biosynthesis
||
>>>
Process: water-soluble vitamin biosynthesis
Process: biotin biosynthesis
||
>>>
Process: vitamin biosynthesis
Process: water-soluble vitamin biosynthesis
Process: biotin biosynthesis
||
>>>
Process: sulfur metabolism
Process: biotin metabolism
Process: biotin biosynthesis
||
>>>
Process: sulfur compound biosynthesis
Process: biotin biosynthesis
||
>>>
Process: cellular biosynthesis
Process: vitamin biosynthesis
Process: water-soluble vitamin biosynthesis
Process: biotin biosynthesis
||
>>>
Process: sulfur compound biosynthesis
Process: biotin biosynthesis
||
>>>
Process: heterocycle metabolism
Process: biotin metabolism
Process: biotin biosynthesis
||
>>>
Process: cofactor metabolism
Process: biotin metabolism
Process: biotin biosynthesis
||
>>>
Process: cellular physiological process
Process: cellular metabolism
Process: organic acid metabolism
Process: carboxylic acid metabolism
Process: biotin metabolism
Process: biotin biosynthesis
||
>>>
Process: vitamin metabolism
Process: water-soluble vitamin metabolism
Process: biotin metabolism
Process: biotin biosynthesis
||
>>>
Process: water-soluble vitamin biosynthesis
Process: biotin biosynthesis
||
>>>
Process: vitamin biosynthesis
Process: water-soluble vitamin biosynthesis
Process: biotin biosynthesis
||
>>>
Process: sulfur metabolism
Process: biotin metabolism
Process: biotin biosynthesis
||
>>>
Process: sulfur compound biosynthesis
Process: biotin biosynthesis
||
>>>
Process: cellular biosynthesis
Process: vitamin biosynthesis
Process: water-soluble vitamin biosynthesis
Process: biotin biosynthesis
||
>>>
Process: sulfur compound biosynthesis
Process: biotin biosynthesis
||
>>>
Process: heterocycle metabolism
Process: biotin metabolism
Process: biotin biosynthesis
||
>>>
Process: cofactor metabolism
Process: biotin metabolism
Process: biotin biosynthesis
||
>>>
Process: cellular process
Process: cellular physiological process
Process: cellular metabolism
Process: organic acid metabolism
Process: carboxylic acid metabolism
Process: biotin metabolism
Process: biotin biosynthesis
||
>>>
Process: vitamin metabolism
Process: water-soluble vitamin metabolism
Process: biotin metabolism
Process: biotin biosynthesis
||
>>>
Process: water-soluble vitamin biosynthesis
Process: biotin biosynthesis
||
>>>
Process: vitamin biosynthesis
Process: water-soluble vitamin biosynthesis
Process: biotin biosynthesis
||
>>>
Process: sulfur metabolism
Process: biotin metabolism
Process: biotin biosynthesis
||
>>>
Process: sulfur compound biosynthesis
Process: biotin biosynthesis
||
>>>
Process: cellular biosynthesis
Process: vitamin biosynthesis
Process: water-soluble vitamin biosynthesis
Process: biotin biosynthesis
||
>>>
Process: sulfur compound biosynthesis
Process: biotin biosynthesis
||
>>>
Process: heterocycle metabolism
Process: biotin metabolism
Process: biotin biosynthesis
||
>>>
Process: cofactor metabolism
Process: biotin metabolism
Process: biotin biosynthesis
Process: physiological process
Process: metabolism
Process: biosynthesis
Process: cellular biosynthesis
Process: vitamin biosynthesis
Process: water-soluble vitamin biosynthesis
Process: biotin biosynthesis
||
>>>
Process: sulfur compound biosynthesis
Process: biotin biosynthesis
||
>>>
Process: cellular metabolism
Process: organic acid metabolism
Process: carboxylic acid metabolism
Process: biotin metabolism
Process: biotin biosynthesis
||
>>>
Process: vitamin metabolism
Process: water-soluble vitamin metabolism
Process: biotin metabolism
Process: biotin biosynthesis
||
>>>
Process: water-soluble vitamin biosynthesis
Process: biotin biosynthesis
||
>>>
Process: vitamin biosynthesis
Process: water-soluble vitamin biosynthesis
Process: biotin biosynthesis
||
>>>
Process: sulfur metabolism
Process: biotin metabolism
Process: biotin biosynthesis
||
>>>
Process: sulfur compound biosynthesis
Process: biotin biosynthesis
||
>>>
Process: cellular biosynthesis
Process: vitamin biosynthesis
Process: water-soluble vitamin biosynthesis
Process: biotin biosynthesis
||
>>>
Process: sulfur compound biosynthesis
Process: biotin biosynthesis
||
>>>
Process: heterocycle metabolism
Process: biotin metabolism
Process: biotin biosynthesis
||
>>>
Process: cofactor metabolism
Process: biotin metabolism
Process: biotin biosynthesis
||
>>>
Process: cellular physiological process
Process: cellular metabolism
Process: organic acid metabolism
Process: carboxylic acid metabolism
Process: biotin metabolism
Process: biotin biosynthesis
||
>>>
Process: vitamin metabolism
Process: water-soluble vitamin metabolism
Process: biotin metabolism
Process: biotin biosynthesis
||
>>>
Process: water-soluble vitamin biosynthesis
Process: biotin biosynthesis
||
>>>
Process: vitamin biosynthesis
Process: water-soluble vitamin biosynthesis
Process: biotin biosynthesis
||
>>>
Process: sulfur metabolism
Process: biotin metabolism
Process: biotin biosynthesis
||
>>>
Process: sulfur compound biosynthesis
Process: biotin biosynthesis
||
>>>
Process: cellular biosynthesis
Process: vitamin biosynthesis
Process: water-soluble vitamin biosynthesis
Process: biotin biosynthesis
||
>>>
Process: sulfur compound biosynthesis
Process: biotin biosynthesis
||
>>>
Process: heterocycle metabolism
Process: biotin metabolism
Process: biotin biosynthesis
||
>>>
Process: cofactor metabolism
Process: biotin metabolism
Process: biotin biosynthesis
||
>>>
Process: cellular process
Process: cellular physiological process
Process: cellular metabolism
Process: organic acid metabolism
Process: carboxylic acid metabolism
Process: biotin metabolism
Process: biotin biosynthesis
||
>>>
Process: vitamin metabolism
Process: water-soluble vitamin metabolism
Process: biotin metabolism
Process: biotin biosynthesis
||
>>>
Process: water-soluble vitamin biosynthesis
Process: biotin biosynthesis
||
>>>
Process: vitamin biosynthesis
Process: water-soluble vitamin biosynthesis
Process: biotin biosynthesis
||
>>>
Process: sulfur metabolism
Process: biotin metabolism
Process: biotin biosynthesis
||
>>>
Process: sulfur compound biosynthesis
Process: biotin biosynthesis
||
>>>
Process: cellular biosynthesis
Process: vitamin biosynthesis
Process: water-soluble vitamin biosynthesis
Process: biotin biosynthesis
||
>>>
Process: sulfur compound biosynthesis
Process: biotin biosynthesis
||
>>>
Process: heterocycle metabolism
Process: biotin metabolism
Process: biotin biosynthesis
||
>>>
Process: cofactor metabolism
Process: biotin metabolism
Process: biotin biosynthesis
||
>>>
Component: Not Available
# Location:
Cytoplasm
# Blattner_Number:
b0775
# Gene_Sequence:
ATGGCTCACCGCCCACGCTGGACATTGTCGCAAGTCACAGAATTATTTGAAAAACCGTTGCTGGATCTGC
TGTTTGAAGCGCAGCAGGTGCATCGCCAGCATTTCGATCCTCGTCAGGTGCAGGTCAGCACGTTGCTGTC
GATTAAGACCGGAGCTTGTCCGGAAGATTGCAAATACTGCCCGCAAAGCTCGCGCTACAAAACCGGGCTG
GAAGCCGAGCGGTTGATGGAAGTTGAACAGGTGCTGGAGTCGGCGCGCAAAGCGAAAGCGGCAGGATCGA
CGCGCTTCTGTATGGGCGCGGCGTGGAAGAATCCCCACGAACGCGATATGCCGTACCTGGAACAAATGGT
GCAGGGGGTAAAAGCGATGGGGCTGGAGGCGTGTATGACGCTGGGCACGTTGAGTGAATCTCAGGCGCAG
CGCCTCGCGAACGCCGGGCTGGATTACTACAACCACAACCTGGACACCTCGCCGGAGTTTTACGGCAATA
TCATCACCACACGCACTTATCAGGAACGCCTCGATACGCTGGAAAAAGTGCGCGATGCCGGGATCAAAGT
CTGTTCTGGCGGCATTGTGGGCTTAGGCGAAACGGTAAAAGATCGCGCCGGATTATTGCTGCAACTGGCA
AACCTGCCGACGCCGCCGGAAAGCGTGCCAATCAACATGCTGGTGAAGGTGAAAGGCACGCCGCTTGCCG
ATAACGATGATGTCGATGCCTTTGATTTTATTCGCACCATTGCGGTCGCGCGGATCATGATGCCAACCTC
TTACGTGCGCCTTTCTGCCGGACGCGAGCAGATGAACGAACAGACTCAGGCGATGTGCTTTATGGCAGGC
GCAAACTCGATTTTCTACGGTTGCAAACTGCTGACCACGCCGAATCCGGAAGAAGATAAAGACCTGCAAC
TGTTCCGCAAACTGGGGCTAAATCCGCAGCAAACTGCCGTGCTGGCAGGGGATAACGAACAACAGCAACG
TCTTGAACAGGCGCTGATGACCCCGGACACCGACGAATATTACAACGCGGCAGCATTATGA
# Upstream_100_bases:
TCGTCCGTTGTCATAATCGACTTGTAAACCAAATTGAAAAGATTTAGGTTTACAAGTCTACACCGAATTA
ACAACAAAAAACACGTTTTGGAGAAGCCCC
# Blattner_No_Ontology:
Biosynthesis of cofactors, prosthetic groups and carriers
# Gene_Position:
808567-809607 (Clockwise)
# Centisome_Position:
17.427
# Gene_Name:
bioB
# GC_Content:
55.52%
# Metabolic_Importance:
Non_Essential
# Preceding_Gene:
bioA
# Following_Gene:
bioF
# Operon_Status:
Yes
# Operon_Components:
bioB_bioF_bioC_bioD Ref: RegulonDB http://kinich.cifn.unam.mx:8850/db/regulondb_cgi.query_simple?v_organism=ECK12&v_table=3&v_name=bioB
# Paralogues:
None
# Copy Number:
Unknown
# RNA_Copy_No.:
Log phase (2max): 1.33
Stationary phase (2max): 6.57
Ref: Nature Biotech., 18, 1262-68, Dec. 2000 (PMID=11101804)
# Genbank_ID_(DNA):
G1786992
# Genbank_ID_(Protein):
AAC73862.1
# SWISS_PROT_(AC_&_ID):
$ BIOB_ECOLI (P12996)
# 2D_Gel_Image:
Not Available
# Other_Databases:
- ECO2DBASE: E038.6
- ECOCYC: EG10118
- EcoGene: EG10118
- EMBL: J04423
- InterPro: IPR010722; IPR002684; IPR006638; IPR007197
- Pfam: PF06968; PF04055
- PIR: JC2517
# Pfam_Domain/Function:
PF06968 Biotin and Thiamin Synthesis associated domain; PF04055 Radical SAM superfamily;
# Homologues:
Organism=Saccharomyces cerevisiae, GI6321725, Length=375, Positives=69%, Blast Score=312
# Similarity:
Belongs to the biotin and lipoic acid synthetases family.
# EC_Number:
2.8.1.6
# No._of_Amino_Acids:
346 (Translated Protein)
345 (Mature Protein)
# Molecular_Weight:
38649 38517
# Theoretical_pI:
5.13
# Theoretical_pI (Mature):
5.13
# Sequence:
// MAHRPRWTLSQVTELFEKPLLDLLFEAQQVHRQHFDPRQVQVSTLLSIKTGACPEDCKYC
// PQSSRYKTGLEAERLMEVEQVLESARKAKAAGSTRFCMGAAWKNPHERDMPYLEQMVQGV
// KAMGLEACMTLGTLSESQAQRLANAGLDYYNHNLDTSPEFYGNIITTRTYQERLDTLEKV
// RDAGIKVCSGGIVGLGETVKDRAGLLLQLANLPTPPESVPINMLVKVKGTPLADNDDVDA
// FDFIRTIAVARIMMPTSYVRLSAGREQMNEQTQAMCFMAGANSIFYGCKLLTTPNPEEDK
// DLQLFRKLGLNPQQTAVLAGDNEQQQRLEQALMTPDTDEYYNAAAL
// /\
// AHRPRWTLSQVTELFEKPLLDLLFEAQQVHRQHFDPRQVQVSTLLSIKTGACPEDCKYCP
// QSSRYKTGLEAERLMEVEQVLESARKAKAAGSTRFCMGAAWKNPHERDMPYLEQMVQGVK
// AMGLEACMTLGTLSESQAQRLANAGLDYYNHNLDTSPEFYGNIITTRTYQERLDTLEKVR
// DAGIKVCSGGIVGLGETVKDRAGLLLQLANLPTPPESVPINMLVKVKGTPLADNDDVDAF
// DFIRTIAVARIMMPTSYVRLSAGREQMNEQTQAMCFMAGANSIFYGCKLLTTPNPEEDKD
// LQLFRKLGLNPQQTAVLAGDNEQQQRLEQALMTPDTDEYYNAAAL
# PROSITE_Motif:
Not Available
# Important_Sites:
Not Available
# Transmembrane:
Not Available
# Cys/Met_Content:
2.3 %Cys (Translated Protein)
4.0 %Met (Translated Protein)
6.4 %Cys+Met (Translated Protein)
2.3 %Cys (Mature Protein)
3.8 %Met (Mature Protein)
6.1 %Cys+Met (Mature Protein)
# Secondary_Structure:
>BIOB_ECOLI (Translated Protein)
MAHRPRWTLSQVTELFEKPLLDLLFEAQQVHRQHFDPRQVQVSTLLSIKTGACPEDCKYC
CCCCCCCCHHHHHHHHCCHHHHHHHHHHHHHHHHCCCCEEEEEEEEECCCCCCCCCCCCC
PQSSRYKTGLEAERLMEVEQVLESARKAKAAGSTRFCMGAAWKNPHERDMPYLEQMVQGV
CCCCCCCCCCCCCCCCCHHHHHHHHHHHHHCCCCEEEEEECCCCCCCCCHHHHHHHHHHH
KAMGLEACMTLGTLSESQAQRLANAGLDYYNHNLDTSPEFYGNIITTRTYQERLDTLEKV
HHCCCCCCCCCCCCCHHHHHHHHHCCCCEECCCCCCCHHHHCCCCCCCCHHHHHHHHHHH
RDAGIKVCSGGIVGLGETVKDRAGLLLQLANLPTPPESVPINMLVKVKGTPLADNDDVDA
HHCCCCCCCCEEEECCCCHHHHHHHHHHHHHCCCCCCEEEEEEEEECCCCCCCCCCCCCH
FDFIRTIAVARIMMPTSYVRLSAGREQMNEQTQAMCFMAGANSIFYGCKLLTTPNPEEDK
HHHHHHHHHHHHHCCCCEEECCCCCCCCCHHHHHHHHHHCCCCEEECCCCCCCCCCCHHH
DLQLFRKLGLNPQQTAVLAGDNEQQQRLEQALMTPDTDEYYNAAAL
HHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHCCCHHHHHCCCCCCC
/\
>BIOB_ECOLI (Mature Protein)
AHRPRWTLSQVTELFEKPLLDLLFEAQQVHRQHFDPRQVQVSTLLSIKTGACPEDCKYCP
CCCCCCCHHHHHHHHCCHHHHHHHHHHHHHHHHCCCCEEEEEEEEECCCCCCCCCCCCCC
QSSRYKTGLEAERLMEVEQVLESARKAKAAGSTRFCMGAAWKNPHERDMPYLEQMVQGVK
CCCCCCCCCCCCCCCCHHHHHHHHHHHHHCCCCEEEEEECCCCCCCCCHHHHHHHHHHHH
AMGLEACMTLGTLSESQAQRLANAGLDYYNHNLDTSPEFYGNIITTRTYQERLDTLEKVR
HCCCCCCCCCCCCCHHHHHHHHHCCCCEECCCCCCCHHHHCCCCCCCCHHHHHHHHHHHH
DAGIKVCSGGIVGLGETVKDRAGLLLQLANLPTPPESVPINMLVKVKGTPLADNDDVDAF
HCCCCCCCCEEEECCCCHHHHHHHHHHHHHCCCCCCEEEEEEEEECCCCCCCCCCCCCHH
DFIRTIAVARIMMPTSYVRLSAGREQMNEQTQAMCFMAGANSIFYGCKLLTTPNPEEDKD
HHHHHHHHHHHHCCCCEEECCCCCCCCCHHHHHHHHHHCCCCEEECCCCCCCCCCCHHHH
LQLFRKLGLNPQQTAVLAGDNEQQQRLEQALMTPDTDEYYNAAAL
HHHHHHHCCCCCCCCCCCCCHHHHHHHHHHCCCHHHHHCCCCCCC
# PDB_Accession:
& Not Available
# Resolution:
Not Available
# Structure_CLASS:
Alpha Beta
# Quaternary_Structure:
homodimeric A2 complex of bioB
# Interacting_Partners:
1) bioB,
# Cofactors:
--ferredoxin --flavodoxin --NADPH --thiamine diphosphate
# Metals_Ions:
--Fe2+ --FeCl3 --iron --Na2S --S2-
# Kcat_Value_[1/min]:
Not Available
# Specific_Activity_[micromol/min/mg]:
Not Available
# Km_Value_[mM]:
0.002 {dethiobiotin}
# Substrates:
Dethiobiotin + sulfur
# Products:
Biotin
# Specific_Reaction:
Dethiobiotin + sulfur = biotin
# General_Reaction:
Sulfur atom transfer;
# Inhibitor:
--5'-deoxyadenosine --NaBH4
# Priority:
0
# Status:
Selected, Cloned, Expressed, Soluble
# Availability:
SPINE-EU: Department of Biochemistry and Biophysics (DBB) Stockholm University
#END_ECARDFILE
#BEGIN_ECARDFILE
# Entry_ID:
CC0395A.1
# Accession_No.:
UA0000395
# Name:
Toxin relE
# Alternate_Names:
Not Available
# General_Function:
Not Available
# COG_Function:
Translation, ribosomal structure and biogenesis (code J)
# COG_ID:
COG2026 Cytotoxic translational repressor of toxin-antitoxin stability system (Evalue = 8e-48)
# Specific_Function:
Inhibits translation during amino acid starvation. Acts by cleaving mRNA with high codon specificity in the ribosomal A site. UGA is cleaved with fast rate while UAA and UGA are cleaved with intermediate and slow rate, respectively. mRNA cleavage can also occur in the ribosomal E site after peptide release from peptidyl-tRNA in the P site as well as on free 30S subunit. Also acts with relB as a corepressor of relBE transcription. Overproduction of relE has been shown to sharply increase persisters (cells that neither grow or die in presence of bactericidal agent and are largely responsible for high levels of biofilm tolerance to antimicrobials).
# Riley_Gene_Function:
Qin prophage; part of two-component toxin-antitoxin system with RelB, transcriptional corepressor of relBE operon
# Riley_Cell_Function:
>>>
Information transfer
RNA related
Transcription related
||
>>>
Regulation
Type of regulation
Transcriptional level
Repressor
||
>>>
Regulation
Genetic unit regulated
Operon (regulation of one operon)
||
>>>
Cell processes
Adaptation to stress
Other stresses (mechanical, nutritional, oxidative)
||
>>>
Cell processes
Protection
Cell killing
||
>>>
Location of gene products
Cytoplasm
||
>>>
extrachromosomal
Prophage genes and phage related functions
# Gene_Ontology:
>>>
Function: Not Available
||
>>>
Process: Not Available
||
>>>
Component: Not Available
# Location:
Cytoplasm
# Blattner_Number:
b1563
# Gene_Sequence:
ATGGCGTATTTTCTGGATTTTGACGAGCGGGCACTAAAGGAATGGCGAAAGCTGGGCTCGACGGTACGTG
AACAGTTGAAAAAGAAGCTGGTTGAAGTACTTGAGTCACCCCGGATTGAAGCAAACAAGCTCCGTGGTAT
GCCTGATTGTTACAAGATTAAGCTCCGGTCTTCAGGCTATCGCCTTGTATACCAGGTTATAGACGAGAAA
GTTGTCGTTTTCGTGATTTCTGTTGGGAAAAGAGAACGCTCGGAAGTATATAGCGAGGCGGTCAAACGCA
TTCTCTGA
# Upstream_100_bases:
AACAGACACTCCTGAGTGATGAAGATGCTGAACTTGTGGAGATAGTGAAAGAACGGCTTCGTAATCCTAA
GCCAGTACGTGTGACGCTGGATGAACTCTG
# Blattner_No_Ontology:
Hypothetical, unclassified, unknown
# Gene_Position:
1643370-1643657 (Counter Clockwise)
# Centisome_Position:
35.426
# Gene_Name:
relE
# GC_Content:
46.88%
# Metabolic_Importance:
Non_Essential
# Preceding_Gene:
hokD
# Following_Gene:
relB
# Operon_Status:
Yes
# Operon_Components:
relE_relB Ref: RegulonDB http://kinich.cifn.unam.mx:8850/db/regulondb_cgi.query_simple?v_organism=ECK12&v_table=3&v_name=relE
# Paralogues:
None
# Copy Number:
Unknown
# RNA_Copy_No.:
Log phase (2max): 0.07
Stationary phase (2max): 0.13
Ref: Nature Biotech., 18, 1262-68, Dec. 2000 (PMID=11101804)
# Genbank_ID_(DNA):
G1787846
# Genbank_ID_(Protein):
AAC74636.1
# SWISS_PROT_(AC_&_ID):
$ RELE_ECOLI (P0C077)
# 2D_Gel_Image:
Not Available
# Other_Databases:
- ECOCYC: EG11131
- EcoGene: EG11131
- EMBL: X02405
- InterPro: IPR007712; IPR012753
- Pfam: PF05016
- PIR: B22830
# Pfam_Domain/Function:
None
# Homologues:
Not Available
# Similarity:
Not Available
# EC_Number:
Not Available
# No._of_Amino_Acids:
95 (Translated Protein)
94 (Mature Protein)
# Molecular_Weight:
11225 11094
# Theoretical_pI:
10.20
# Theoretical_pI (Mature):
10.20
# Sequence:
// MAYFLDFDERALKEWRKLGSTVREQLKKKLVEVLESPRIEANKLRGMPDCYKIKLRSSGY
// RLVYQVIDEKVVVFVISVGKRERSEVYSEAVKRIL
// /\
// AYFLDFDERALKEWRKLGSTVREQLKKKLVEVLESPRIEANKLRGMPDCYKIKLRSSGYR
// LVYQVIDEKVVVFVISVGKRERSEVYSEAVKRIL
# PROSITE_Motif:
Not Available
# Important_Sites:
Not Available
# Transmembrane:
Not Available
# Cys/Met_Content:
1.1 %Cys (Translated Protein)
2.1 %Met (Translated Protein)
3.2 %Cys+Met (Translated Protein)
1.1 %Cys (Mature Protein)
1.1 %Met (Mature Protein)
2.1 %Cys+Met (Mature Protein)
# Secondary_Structure:
>RELE_ECOLI (Translated Protein)
MAYFLDFDERALKEWRKLGSTVREQLKKKLVEVLESPRIEANKLRGMPDCYKIKLRSSGY
CEEEECCCHHHHHHHHHCCHHHHHHHHHHHHHHHCCCCCCHHHHCCCCCEEEEEECCCCC
RLVYQVIDEKVVVFVISVGKRERSEVYSEAVKRIL
EEEEEEECCEEEEEEEECCCCCHHHHHHHHHHHHC
/\
>RELE_ECOLI (Mature Protein)
AYFLDFDERALKEWRKLGSTVREQLKKKLVEVLESPRIEANKLRGMPDCYKIKLRSSGYR
EEEECCCHHHHHHHHHCCHHHHHHHHHHHHHHHCCCCCCHHHHCCCCCEEEEEECCCCCE
LVYQVIDEKVVVFVISVGKRERSEVYSEAVKRIL
EEEEEECCEEEEEEEECCCCCHHHHHHHHHHHHC
# PDB_Accession:
& Not Available
# Resolution:
Not Available
# Structure_CLASS:
Alpha Beta
# Quaternary_Structure:
Not Available
# Interacting_Partners:
Unknown
# Cofactors:
Not Available
# Metals_Ions:
Not Available
# Kcat_Value_[1/min]:
Not Available
# Specific_Activity_[micromol/min/mg]:
Not Available
# Km_Value_[mM]:
Not Available
# Substrates:
Not Available
# Products:
Not Available
# Specific_Reaction:
Not Available
# General_Reaction:
Not Available
# Inhibitor:
Not Available
# Priority:
7.6
# Status:
Selected, Cloned
# Availability:
Montreal-Kingston Bacterial Structural Genomics Initiative
#END_ECARDFILE
#BEGIN_ECARDFILE
# Entry_ID:
CC0635A.1
# Accession_No.:
UA0000635
# Name:
Alkaline phosphatase isozyme conversion protein precursor
# Alternate_Names:
Not Available
# General_Function:
Cell envelope; Member of M28C family; IAP aminopeptidase; Zn-dependent exopeptidases
# COG_Function:
General function prediction only (code R)
# COG_ID:
COG2234 Predicted aminopeptidases (Evalue = 0.0)
# Specific_Function:
This protein, presumably an aminopeptidase, mediates the conversion of E.coli alkaline phosphatase isozyme 1, to isozymes 2 and 3 by removing, one by one, the two amino-terminal arginine residues.
# Riley_Gene_Function:
aminopeptidase in alkaline phosphatase isozyme conversion
# Riley_Cell_Function:
>>>
Information transfer
Protein related
Posttranslational modification
# Gene_Ontology:
>>>
Function: catalytic activity
Function: hydrolase activity
Function: peptidase activity
||
>>>
Process: physiological process
Process: metabolism
Process: macromolecule metabolism
Process: protein metabolism
Process: cellular protein metabolism
Process: proteolysis
||
>>>
Process: cellular macromolecule metabolism
Process: cellular protein metabolism
Process: proteolysis
||
>>>
Process: cellular metabolism
Process: cellular macromolecule metabolism
Process: cellular protein metabolism
Process: proteolysis
||
>>>
Process: primary metabolism
Process: protein metabolism
Process: cellular protein metabolism
Process: proteolysis
||
>>>
Process: cellular physiological process
Process: cellular metabolism
Process: cellular macromolecule metabolism
Process: cellular protein metabolism
Process: proteolysis
||
>>>
Process: cellular process
Process: cellular physiological process
Process: cellular metabolism
Process: cellular macromolecule metabolism
Process: cellular protein metabolism
Process: proteolysis
||
>>>
Component: Not Available
# Location:
Cytoplasm
# Blattner_Number:
b2753
# Gene_Sequence:
ATGTTTTCCGCATTGCGCCACCGTACCGCTGCCCTGGCGCTCGGCGTATGCTTTATTCTCCCCGTACACG
CCTCGTCACCTAAACCTGGCGATTTTGCTAATACTCAGGCACGACATATTGCTACTTTCTTTCCGGGACG
CATGACCGGAACTCCTGCAGAAATGTTATCTGCCGATTATATTCGCCAACAGTTTCAGCAAATGGGTTAT
CGCAGTGATATTCGGACATTTAATAGTCGGTATATTTATACCGCCCGCGATAATCGTAAGAGCTGGCATA
ACGTGACGGGAAGTACGGTGATTGCCGCTCATGAAGGCAAAGCGCCGCAGCAGATCATCATTATGGCGCA
TCTGGATACTTACGCCCCGCTGAGCGATGCTGACGCCGATGCCAATCTCGGCGGGCTGACGTTACAAGGA
ATGGATGATAACGCCGCAGGTTTAGGTGTCATGCTGGAATTGGCAGAACGCCTGAAAAATACGCCTACCG
AGTATGGTATTCGATTTGTGGCGACCAGCGGCGAAGAGGAAGGGAAATTAGGCGCTGAGAATTTACTCAA
GCGGATGAGTGACACCGAAAAGAAAAATACGCTGCTGGTGATTAATCTCGATAACTTAATTGTTGGCGAT
AAATTGTATTTCAACAGCGGTGTAAAAACCCCTGAGGCAGTAAGGAAATTAACGCGCGACAGGGCGCTGG
CAATTGCGCGCAGTCACGGAATAGCCGCAACGACCAATCCGGGTTTGAATAAAAATTATCCGAAAGGCAC
TGGGTGTTGTAATGACGCAGAAATATTCGACAAAGCGGGCATTGCTGTACTTTCGGTGGAAGCGACTAAC
TGGAATCTTGGGAATAAGGATGGTTATCAGCAACGCGCAAAAACACCTGCCTTCCCGGCGGGAAATAGCT
GGCATGACGTAAGACTGGATAATCACCAACATATTGATAAGGCTCTTCCTGGAAGAATAGAACGTCGCTG
CCGTGACGTTATGCGGATAATGCTACCTCTGGTGAAGGAGTTGGCGAAGGCGTCTTGA
# Upstream_100_bases:
CCGGATTTCGGGCGTTTAGGAAGATTTGAAATTGTTTTAGCGCAGCGGCAGTTTCATACTATGGCGGTAA
AAAAATTTGCATGGTATTTAAGGACTCACT
# Blattner_No_Ontology:
Translation, post-translational modification
# Gene_Position:
2874603-2875640 (Clockwise)
# Centisome_Position:
61.957
# Gene_Name:
iap
# GC_Content:
49.33%
# Metabolic_Importance:
Non_Essential
# Preceding_Gene:
cysD
# Following_Gene:
ygbF
# Operon_Status:
No
# Operon_Components:
None
# Paralogues:
None
# Copy Number:
Unknown
# RNA_Copy_No.:
Log phase (2max): 0.07
Stationary phase (2max): 0.12
Ref: Nature Biotech., 18, 1262-68, Dec. 2000 (PMID=11101804)
# Genbank_ID_(DNA):
G1789111
# Genbank_ID_(Protein):
AAC75795.1
# SWISS_PROT_(AC_&_ID):
$ IAP_ECOLI (P10423)
# 2D_Gel_Image:
Not Available
# Other_Databases:
- ECOCYC: EG10488
- EcoGene: EG10488
- EMBL: M18270
- InterPro: IPR007484
- Pfam: PF04389
- PIR: A28382
# Pfam_Domain/Function:
PF04389 Peptidase family M28;
# Homologues:
Not Available
# Similarity:
Belongs to the peptidase M28C family.
# EC_Number:
3.4.11.-
# No._of_Amino_Acids:
345 (Translated Protein)
321 (Mature Protein)
# Molecular_Weight:
37921 35343
# Theoretical_pI:
9.46
# Theoretical_pI (Mature):
9.25
# Sequence:
// MFSALRHRTAALALGVCFILPVHASSPKPGDFANTQARHIATFFPGRMTGTPAEMLSADY
// IRQQFQQMGYRSDIRTFNSRYIYTARDNRKSWHNVTGSTVIAAHEGKAPQQIIIMAHLDT
// YAPLSDADADANLGGLTLQGMDDNAAGLGVMLELAERLKNTPTEYGIRFVATSGEEEGKL
// GAENLLKRMSDTEKKNTLLVINLDNLIVGDKLYFNSGVKTPEAVRKLTRDRALAIARSHG
// IAATTNPGLNKNYPKGTGCCNDAEIFDKAGIAVLSVEATNWNLGNKDGYQQRAKTPAFPA
// GNSWHDVRLDNHQHIDKALPGRIERRCRDVMRIMLPLVKELAKAS
// /\
// SSPKPGDFANTQARHIATFFPGRMTGTPAEMLSADYIRQQFQQMGYRSDIRTFNSRYIYT
// ARDNRKSWHNVTGSTVIAAHEGKAPQQIIIMAHLDTYAPLSDADADANLGGLTLQGMDDN
// AAGLGVMLELAERLKNTPTEYGIRFVATSGEEEGKLGAENLLKRMSDTEKKNTLLVINLD
// NLIVGDKLYFNSGVKTPEAVRKLTRDRALAIARSHGIAATTNPGLNKNYPKGTGCCNDAE
// IFDKAGIAVLSVEATNWNLGNKDGYQQRAKTPAFPAGNSWHDVRLDNHQHIDKALPGRIE
// RRCRDVMRIMLPLVKELAKAS
# PROSITE_Motif:
Not Available
# Important_Sites:
Signal Chain 1 24
# Transmembrane:
Not Available
# Cys/Met_Content:
1.2 %Cys (Translated Protein)
2.9 %Met (Translated Protein)
4.1 %Cys+Met (Translated Protein)
0.9 %Cys (Mature Protein)
2.8 %Met (Mature Protein)
3.7 %Cys+Met (Mature Protein)
# Secondary_Structure:
>IAP_ECOLI (Translated Protein)
MFSALRHRTAALALGVCFILPVHASSPKPGDFANTQARHIATFFPGRMTGTPAEMLSADY
CHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHHHCCCCCCCCHHHHHHHHH
IRQQFQQMGYRSDIRTFNSRYIYTARDNRKSWHNVTGSTVIAAHEGKAPQQIIIMAHLDT
HHHHHHHCCCCCCCCCCCCEEEEEECCCCCCCCCCCCEEEEEEECCCCCCEEEEEEECCC
YAPLSDADADANLGGLTLQGMDDNAAGLGVMLELAERLKNTPTEYGIRFVATSGEEEGKL
CCCCCCCCCCCCCCCCEECCCCCCHHHHHHHHHHHHHHHCCCCCCCEEEEEECCCHHCCH
GAENLLKRMSDTEKKNTLLVINLDNLIVGDKLYFNSGVKTPEAVRKLTRDRALAIARSHG
HHHHHHHHCCHHHHCCEEEEEEECCCCCCCCEEEECCCCCCHHHHHHHHHHHHHHHHHHC
IAATTNPGLNKNYPKGTGCCNDAEIFDKAGIAVLSVEATNWNLGNKDGYQQRAKTPAFPA
CEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEEEECCCCCCCCCCCCCCCCCCCCC
GNSWHDVRLDNHQHIDKALPGRIERRCRDVMRIMLPLVKELAKAS
CCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCC
/\
>IAP_ECOLI (Mature Protein)
SSPKPGDFANTQARHIATFFPGRMTGTPAEMLSADYIRQQFQQMGYRSDIRTFNSRYIYT
CCCCCCCHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHCCCCCCCCCCCCEEEEE
ARDNRKSWHNVTGSTVIAAHEGKAPQQIIIMAHLDTYAPLSDADADANLGGLTLQGMDDN
ECCCCCCCCCCCCEEEEEEECCCCCCEEEEEEECCCCCCCCCCCCCCCCCCCEECCCCCC
AAGLGVMLELAERLKNTPTEYGIRFVATSGEEEGKLGAENLLKRMSDTEKKNTLLVINLD
HHHHHHHHHHHHHHHCCCCCCCEEEEEECCCHHCCHHHHHHHHHCCHHHHCCEEEEEEEC
NLIVGDKLYFNSGVKTPEAVRKLTRDRALAIARSHGIAATTNPGLNKNYPKGTGCCNDAE
CCCCCCCEEEECCCCCCHHHHHHHHHHHHHHHHHHCCEEECCCCCCCCCCCCCCCCCCCC
IFDKAGIAVLSVEATNWNLGNKDGYQQRAKTPAFPAGNSWHDVRLDNHQHIDKALPGRIE
CCCCCCCCEEEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHH
RRCRDVMRIMLPLVKELAKAS
HHHHHHHHHHHHHHHHHHCCC
# PDB_Accession:
& Not Available
# Resolution:
Not Available
# Structure_CLASS:
Alpha Beta
# Quaternary_Structure:
Homodimeric A2 Complex of phoA
# Interacting_Partners:
1) phoA,
# Cofactors:
Not Available
# Metals_Ions:
Not Available
# Kcat_Value_[1/min]:
Not Available
# Specific_Activity_[micromol/min/mg]:
Not Available
# Km_Value_[mM]:
Not Available
# Substrates:
Not Available
# Products:
Not Available
# Specific_Reaction:
Not Available
# General_Reaction:
Hydrolase; Acting on peptide bonds (Peptidases); Aminopeptidases
# Inhibitor:
Not Available
# Priority:
5.9
# Status:
Not Available
# Availability:
Not Available
#END_ECARDFILE
#BEGIN_ECARDFILE
# Entry_ID:
CC2352A.1
# Accession_No.:
UA0002352
# Name:
Peptidyl-prolyl cis-trans isomerase C
# Alternate_Names:
PPIase C; Rotamase C; Parvulin; Par10
# General_Function:
FKBP-like
# COG_Function:
Posttranslational modification, protein turnover, chaperones (code O)
# COG_ID:
COG0760 Parvulin-like peptidyl-prolyl isomerase (Evalue = 3e-49)
# Specific_Function:
PPIases accelerate the folding of proteins. It prefers amino acid residues with hydrophobic side chains like leucine and phenylalanine in the P1 position of the peptides substrates.
# Riley_Gene_Function:
peptidyl-prolyl cis-trans isomerase C (rotamase C)
# Riley_Cell_Function:
>>>
Information transfer
Protein related
Chaperoning, folding
# Gene_Ontology:
>>>
Function: catalytic activity
Function: isomerase activity
||
>>>
Process: Not Available
||
>>>
Component: Not Available
# Location:
Cytoplasm
# Blattner_Number:
b3775
# Gene_Sequence:
ATGGCAAAAACAGCAGCAGCACTGCATATCCTTGTAAAAGAAGAGAAACTGGCTCTGGATCTTCTCGAGC
AGATTAAGAACGGGGCCGATTTCGGCAAGCTGGCGAAGAAACACTCCATTTGCCCATCAGGCAAACGCGG
CGGTGATTTAGGTGAATTCCGCCAGGGTCAGATGGTTCCGGCGTTCGATAAAGTGGTTTTCTCTTGTCCG
GTACTGGAGCCGACCGGCCCGCTGCACACCCAGTTCGGATATCACATCATTAAGGTGCTGTACCGCAACT
AA
# Upstream_100_bases:
TGCCATATATGTACCAGCCACTCCCTGACTGACAATTACGTTAGCATCTGCGGATCATGCTAAAATCGCC
GCCTGACAATTATTCACTCAAGGCACGATC
# Blattner_No_Ontology:
Translation, post-translational modification
# Gene_Position:
3957555-3957836 (Counter Clockwise)
# Centisome_Position:
85.304
# Gene_Name:
ppiC or parVA
# GC_Content:
51.77%
# Metabolic_Importance:
Non_Essential
# Preceding_Gene:
ilvC
# Following_Gene:
yifN
# Operon_Status:
No
# Operon_Components:
None
# Paralogues:
None
# Copy Number:
Unknown
# RNA_Copy_No.:
Log phase (2max): 2.27
Stationary phase (2max): 0.11
Ref: Nature Biotech., 18, 1262-68, Dec. 2000 (PMID=11101804)
# Genbank_ID_(DNA):
G1790211
# Genbank_ID_(Protein):
AAC76780.1
# SWISS_PROT_(AC_&_ID):
$ PPIC_ECOLI (P0A9L5)
# 2D_Gel_Image:
Not Available
# Other_Databases:
- ECOCYC: EG12352
- EcoGene: EG12352
- EMBL: S73874
- InterPro: IPR000297
- Pfam: PF00639
- PIR: S48658
- PROSITE: PS01096
# Pfam_Domain/Function:
PF00639 PPIC-type PPIASE domain
# Homologues:
Not Available
# Similarity:
Belongs to the ppiC/parvulin rotamase family. Contains 1 PpiC domain.
# EC_Number:
5.2.1.8
# No._of_Amino_Acids:
93 (Translated Protein)
92 (Mature Protein)
# Molecular_Weight:
10232 10101
# Theoretical_pI:
9.66
# Theoretical_pI (Mature):
9.66
# Sequence:
// MAKTAAALHILVKEEKLALDLLEQIKNGADFGKLAKKHSICPSGKRGGDLGEFRQGQMVP
// AFDKVVFSCPVLEPTGPLHTQFGYHIIKVLYRN
// /\
// AKTAAALHILVKEEKLALDLLEQIKNGADFGKLAKKHSICPSGKRGGDLGEFRQGQMVPA
// FDKVVFSCPVLEPTGPLHTQFGYHIIKVLYRN
# PROSITE_Motif:
PPIC_PPIASE_1; PATTERN. PS01096; PpiC-type peptidyl-prolyl cis-trans isomerase signature. F-[GSADEI]-x-[LVAQ]-A-x(3)-[ST]-x(3,4)-[STQ]-x(3,5)-[GER]-G-x-[LIVM]-PA [GS]. PDOC00840; //
# Important_Sites:
Not Available
# Transmembrane:
Not Available
# Cys/Met_Content:
2.2 %Cys (Translated Protein)
2.2 %Met (Translated Protein)
4.3 %Cys+Met (Translated Protein)
2.2 %Cys (Mature Protein)
1.1 %Met (Mature Protein)
3.3 %Cys+Met (Mature Protein)
# Secondary_Structure_(PDB):
AKTAAALHILVKEEKLALDLLEQIKNGADFGKLAKKHSICPSGKRGGDLGE
CEEEEEEEEEECCHHHHHHHHHHHHHHCCHHHHHHHHHCCCCHHHCCCCCE
FRQGQMVPAFDKVVFSCPVLEPTGPLHTQFGYHIIKVLYRN
EEECCCCCHHHHHHHHEEECEEECEEEECCCEEEEEEECCC
# PDB_Accession:
& 1jns
# Resolution:
NMR
# Structure_CLASS:
Alpha Beta
# Quaternary_Structure:
Not Available
# Interacting_Partners:
Unknown
# Cofactors:
Not Available
# Metals_Ions:
Not Available
# Kcat_Value_[1/min]:
Not Available
# Specific_Activity_[micromol/min/mg]:
Not Available
# Km_Value_[mM]:
Not Available
# Substrates:
Peptidoproline (omega=180)
# Products:
peptidylproline (omega=0)
# Specific_Reaction:
Peptidoproline (omega=180) = peptidylproline (omega=0)
# General_Reaction:
Rotation (Single bond)
# Inhibitor:
--Cyclosporin A
# Priority:
0.0
# Status:
Completed
# Availability:
Completed
#END_ECARDFILE
#BEGIN_ECARDFILE
# Entry_ID:
CC0736A.1
# Accession_No.:
UA0000736
# Name:
Peroxidase/catalase HPI
# Alternate_Names:
Catalase-peroxidase; Hydroperoxidase I
# General_Function:
Cellular processes; Heme-dependent peroxidases
# COG_Function:
Inorganic ion transport and metabolism (code P)
# COG_ID:
COG0376 Catalase (peroxidase I) (Evalue = 0.0)
# Specific_Function:
Bifunctional, exhibiting both a catalase and broad- spectrum peroxidase activities.
# Riley_Gene_Function:
catalase; hydroperoxidase HPI(I)
# Riley_Cell_Function:
>>>
Cell processes
Protection
Detoxification (xenobiotic metabolism)
# Gene_Ontology:
>>>
Function: catalytic activity
Function: oxidoreductase activity
Function: oxidoreductase activity, acting on peroxide as acceptor
Function: peroxidase activity
Function: catalase activity
||
>>>
Function: antioxidant activity
Function: peroxidase activity
Function: catalase activity
||
>>>
Function: catalytic activity
Function: oxidoreductase activity
Function: oxidoreductase activity, acting on peroxide as acceptor
Function: peroxidase activity
||
>>>
Function: antioxidant activity
Function: peroxidase activity
||
>>>
Process: physiological process
Process: metabolism
Process: cellular metabolism
Process: generation of precursor metabolites and energy
Process: electron transport
||
>>>
Process: cellular physiological process
Process: transport
Process: electron transport
||
>>>
Process: cellular metabolism
Process: generation of precursor metabolites and energy
Process: electron transport
||
>>>
Process: localization
Process: establishment of localization
Process: transport
Process: electron transport
||
>>>
Process: cellular process
Process: cellular physiological process
Process: transport
Process: electron transport
||
>>>
Process: cellular metabolism
Process: generation of precursor metabolites and energy
Process: electron transport
Process: physiological process
Process: metabolism
Process: cellular metabolism
Process: oxygen and reactive oxygen species metabolism
Process: response to oxidative stress
||
>>>
Process: cellular physiological process
Process: cellular metabolism
Process: oxygen and reactive oxygen species metabolism
Process: response to oxidative stress
||
>>>
Process: cellular process
Process: cellular physiological process
Process: cellular metabolism
Process: oxygen and reactive oxygen species metabolism
Process: response to oxidative stress
||
>>>
Process: response to stimulus
Process: response to stress
Process: response to oxidative stress
||
>>>
Process: response to abiotic stimulus
Process: response to chemical stimulus
Process: response to oxidative stress
||
>>>
Component: Not Available
# Location:
Cytoplasm
# Blattner_Number:
b3942
# Gene_Sequence:
ATGAGCACGTCAGACGATATCCATAACACCACAGCCACTGGCAAATGCCCGTTCCATCAGGGCGGTCACG
ACCAGAGTGCGGGGGCGGGCACAACCACTCGCGACTGGTGGCCAAATCAACTTCGTGTTGACCTGTTAAA
CCAACATTCTAATCGTTCTAACCCACTGGGTGAGGACTTTGACTACCGCAAAGAATTCAGCAAATTAGAT
TACTACGGCCTGAAAAAAGATCTGAAAGCCCTGTTGACAGAATCTCAACCGTGGTGGCCAGCCGACTGGG
GCAGTTACGCCGGTCTGTTTATTCGTATGGCCTGGCACGGCGCGGGGACTTACCGTTCAATCGATGGACG
CGGTGGCGCGGGTCGTGGTCAGCAACGTTTTGCACCGCTGAACTCCTGGCCGGATAACGTAAGCCTCGAT
AAAGCGCGTCGCCTGTTGTGGCCAATCAAACAGAAATATGGTCAGAAAATCTCCTGGGCCGACCTGTTTA
TCCTCGCGGGTAACGTGGCGCTAGAAAACTCCGGCTTCCGTACCTTCGGTTTTGGTGCCGGTCGTGAAGA
CGTCTGGGAACCGGATCTGGATGTTAACTGGGGTGATGAAAAAGCCTGGCTGACTCACCGTCATCCGGAA
GCGCTGGCGAAAGCACCGCTGGGTGCAACCGAGATGGGTCTGATTTACGTTAACCCGGAAGGCCCGGATC
ACAGCGGCGAACCGCTTTCTGCGGCAGCAGCTATCCGCGCGACCTTCGGCAACATGGGCATGAACGACGA
AGAAACCGTGGCGCTGATTGCGGGTGGTCATACGCTGGGTAAAACCCACGGTGCCGGTCCGACATCAAAT
GTAGGTCCTGATCCAGAAGCTGCACCGATTGAAGAACAAGGTTTAGGTTGGGCGAGCACTTACGGCAGCG
GCGTTGGCGCAGATGCCATTACCTCTGGTCTGGAAGTAGTCTGGACCCAGACGCCGACCCAGTGGAGCAA
CTATTTCTTCGAGAACCTGTTCAAGTATGAGTGGGTACAGACCCGCAGCCCGGCTGGCGCAATCCAGTTC
GAAGCGGTAGACGCACCGGAAATTATCCCGGATCCGTTTGATCCGTCGAAGAAACGTAAACCGACAATGC
TGGTGACCGACCTGACGCTGCGTTTTGATCCTGAGTTCGAGAAGATCTCTCGTCGTTTCCTCAACGATCC
GCAGGCGTTCAACGAAGCCTTTGCCCGTGCCTGGTTCAAACTGACGCACAGGGATATGGGGCCGAAATCT
CGCTACATCGGGCCGGAAGTGCCGAAAGAAGATCTGATCTGGCAAGATCCGCTGCCGCAGCCGATCTACA
ACCCGACCGAGCAGGACATTATCGATCTGAAATTCGCGATTGCGGATTCTGGTCTGTCTGTTAGTGAGCT
GGTATCGGTGGCCTGGGCATCTGCTTCTACCTTCCGTGGTGGCGACAAACGCGGTGGTGCCAACGGTGCG
CGTCTGGCATTAATGCCGCAGCGCGACTGGGATGTGAACGCCGCAGCCGTTCGTGCTCTGCCTGTTCTGG
AGAAAATCCAGAAAGAGTCTGGTAAAGCCTCGCTGGCGGATATCATAGTGCTGGCTGGTGTGGTTGGTGT
TGAGAAAGCCGCAAGCGCCGCAGGTTTGAGCATTCATGTACCGTTTGCGCCGGGTCGCGTTGATGCGCGT
CAGGATCAGACTGACATTGAGATGTTTGAGCTGCTGGAGCCAATTGCTGACGGTTTCCGTAACTATCGCG
CTCGTCTGGACGTTTCCACCACCGAGTCACTGCTGATCGACAAAGCACAGCAACTGACGCTGACCGCGCC
GGAAATGACTGCGCTGGTGGGCGGCATGCGTGTACTGGGTGCCAACTTCGATGGCAGCAAAAACGGCGTC
TTCACTGACCGCGTTGGCGTATTGAGCAATGACTTCTTCGTGAACTTGCTGGATATGCGTTACGAGTGGA
AAGCGACCGACGAATCGAAAGAGCTGTTCGAAGGCCGTGACCGTGAAACCGGCGAAGTGAAATTTACGGC
CAGCCGTGCGGATCTGGTGTTTGGTTCTAACTCCGTCCTGCGTGCGGTGGCGGAAGTTTACGCCAGTAGC
GATGCCCACGAGAAGTTTGTTAAAGACTTCGTGGCGGCATGGGTGAAAGTGATGAACCTCGACCGTTTCG
ACCTGCTGTAA
# Upstream_100_bases:
TATGTAAGATCTCAACTATCGCATCCGTGGATTAATTCAATTATAACTTCTCTCTAACGCTGTGTATCGT
AACGGTAACACTGTAGAGGGGAGCACATTG
# Blattner_No_Ontology:
Cell processes incl. adaptation, protection
# Gene_Position:
4131858-4134038 (Clockwise)
# Centisome_Position:
89.055
# Gene_Name:
katG
# GC_Content:
55.75%
# Metabolic_Importance:
Non_Essential
# Preceding_Gene:
metF
# Following_Gene:
yijE
# Operon_Status:
No
# Operon_Components:
None
# Paralogues:
None
# Copy Number:
Unknown
# RNA_Copy_No.:
Log phase (2max): 0.45
Stationary phase (2max): 0.09
Ref: Nature Biotech., 18, 1262-68, Dec. 2000 (PMID=11101804)
# Genbank_ID_(DNA):
G1790378
# Genbank_ID_(Protein):
AAC76924.1
# SWISS_PROT_(AC_&_ID):
$ CATA_ECOLI (P13029)
# 2D_Gel_Image:
http://ca.expasy.org/cgi-bin/ch2d-compute-map?ECOLI4.5-5.5,P13029
# Other_Databases:
- 2DPAGE: P13029
- ECOCYC: EG10511
- EcoGene: EG10511
- EMBL: M21516
- InterPro: IPR000763; IPR002016; IPR010255
- Pfam: PF00141
- PIR: A65201
- PRINTS: PR00460
- PROSITE: PS00435
# Pfam_Domain/Function:
PF00141 Peroxidase
# Homologues:
Not Available
# Similarity:
Belongs to the peroxidase family. Bacterial peroxidase/catalase subfamily. Contains 1 HRM (heme regulatory motif) repeat.
# EC_Number:
1.11.1.6
# No._of_Amino_Acids:
726 (Translated Protein)
725 (Mature Protein)
# Molecular_Weight:
80024 79893
# Theoretical_pI:
4.93
# Theoretical_pI (Mature):
4.93
# Sequence:
// MSTSDDIHNTTATGKCPFHQGGHDQSAGAGTTTRDWWPNQLRVDLLNQHSNRSNPLGEDF
// DYRKEFSKLDYYGLKKDLKALLTESQPWWPADWGSYAGLFIRMAWHGAGTYRSIDGRGGA
// GRGQQRFAPLNSWPDNVSLDKARRLLWPIKQKYGQKISWADLFILAGNVALENSGFRTFG
// FGAGREDVWEPDLDVNWGDEKAWLTHRHPEALAKAPLGATEMGLIYVNPEGPDHSGEPLS
// AAAAIRATFGNMGMNDEETVALIAGGHTLGKTHGAGPTSNVGPDPEAAPIEEQGLGWAST
// YGSGVGADAITSGLEVVWTQTPTQWSNYFFENLFKYEWVQTRSPAGAIQFEAVDAPEIIP
// DPFDPSKKRKPTMLVTDLTLRFDPEFEKISRRFLNDPQAFNEAFARAWFKLTHRDMGPKS
// RYIGPEVPKEDLIWQDPLPQPIYNPTEQDIIDLKFAIADSGLSVSELVSVAWASASTFRG
// GDKRGGANGARLALMPQRDWDVNAAAVRALPVLEKIQKESGKASLADIIVLAGVVGVEKA
// ASAAGLSIHVPFAPGRVDARQDQTDIEMFELLEPIADGFRNYRARLDVSTTESLLIDKAQ
// QLTLTAPEMTALVGGMRVLGANFDGSKNGVFTDRVGVLSNDFFVNLLDMRYEWKATDESK
// ELFEGRDRETGEVKFTASRADLVFGSNSVLRAVAEVYASSDAHEKFVKDFVAAWVKVMNL
// DRFDLL
// /\
// STSDDIHNTTATGKCPFHQGGHDQSAGAGTTTRDWWPNQLRVDLLNQHSNRSNPLGEDFD
// YRKEFSKLDYYGLKKDLKALLTESQPWWPADWGSYAGLFIRMAWHGAGTYRSIDGRGGAG
// RGQQRFAPLNSWPDNVSLDKARRLLWPIKQKYGQKISWADLFILAGNVALENSGFRTFGF
// GAGREDVWEPDLDVNWGDEKAWLTHRHPEALAKAPLGATEMGLIYVNPEGPDHSGEPLSA
// AAAIRATFGNMGMNDEETVALIAGGHTLGKTHGAGPTSNVGPDPEAAPIEEQGLGWASTY
// GSGVGADAITSGLEVVWTQTPTQWSNYFFENLFKYEWVQTRSPAGAIQFEAVDAPEIIPD
// PFDPSKKRKPTMLVTDLTLRFDPEFEKISRRFLNDPQAFNEAFARAWFKLTHRDMGPKSR
// YIGPEVPKEDLIWQDPLPQPIYNPTEQDIIDLKFAIADSGLSVSELVSVAWASASTFRGG
// DKRGGANGARLALMPQRDWDVNAAAVRALPVLEKIQKESGKASLADIIVLAGVVGVEKAA
// SAAGLSIHVPFAPGRVDARQDQTDIEMFELLEPIADGFRNYRARLDVSTTESLLIDKAQQ
// LTLTAPEMTALVGGMRVLGANFDGSKNGVFTDRVGVLSNDFFVNLLDMRYEWKATDESKE
// LFEGRDRETGEVKFTASRADLVFGSNSVLRAVAEVYASSDAHEKFVKDFVAAWVKVMNLD
// RFDLL
# PROSITE_Motif:
PEROXIDASE_1; PATTERN. PS00435; Peroxidases proximal heme-ligand signature. [DET]-[LIVMTA]-x(2)-[LIVM]-[LIVMSTAG]-[SAG]-[LIVMSTAG]-H-[STA]-[LIVMFY]. PDOC00394; //
PEROXIDASE_2; PATTERN. PS00436; Peroxidases active site signature. [SGATV]-x(3)-[LIVMA]-R-[LIVMA]-x-[FW]-H-x-[SAC]. PDOC00394; //
# Important_Sites:
Active_Site 102 102 By Similarity
Active_Site 106 106 By Similarity
Binding Site 267 267 Proximal Heme Ligand (By
# Transmembrane:
Not Available
# Cys/Met_Content:
0.1 %Cys (Translated Protein)
1.8 %Met (Translated Protein)
1.9 %Cys+Met (Translated Protein)
0.1 %Cys (Mature Protein)
1.7 %Met (Mature Protein)
1.8 %Cys+Met (Mature Protein)
# Secondary_Structure_(PDB):
GKSYPTVSPDYQKAIEKAKRKLRGFIAEKKCAPLILRLAWHSAGTFDSKTK
CCCCCCCCHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHCCCCCCCC
TGGPFGTIKHQAELAHGANNGLDIAVRLLEPIKEQFPIVSYADFYQLAGVV
CCCCCCCCCCHHHHHCCCCCCHHHHHHHHHHHHHHCCCCCHHHHHHHHHHH
AVEITGGPEVPFHPGREDKPEPPPEGRLPDATKGSDHLRDVFGKAMGLSDQ
HHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHCCCCCHH
DIVALSGGHTIGAAHKERSGFEGPWTSNPLIFDNSYFTELLTGEKDGLLQL
HHHHHHHHHHCCEEECCCCCCCCCCCCCCCEEEHHHHHHHHHCCCCCEEEC
PSDKALLTDSVFRPLVEKYAADEDVFFADYAEAHLKLSELGFAEA
HHHHHHHHCHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHCCCCCC
# PDB_Accession:
& Model Based on 1APX (95-196)
# Resolution:
Not Available
# Structure_CLASS:
Mainly Alpha
# Quaternary_Structure:
homotetrameric A4 complex of katG
# Interacting_Partners:
1) katG,
# Cofactors:
--heme
# Metals_Ions:
--Iron (heme axial ligand)
# Kcat_Value_[1/min]:
980000
# Specific_Activity_[micromol/min/mg]:
Not Available
# Km_Value_[mM]:
18.2 {H2O2}
10 {H2O2}
3.7 {H2O2}
# Substrates:
Hydrogen peroxide
# Products:
H2O + O2
# Specific_Reaction:
(2) Hydrogen peroxide --> (2) H2O + O2
# General_Reaction:
Redox reaction; Peroxidase activity
# Inhibitor:
--2-mercaptoethanol --3-amino-1H-1,2,4-triazole --H2O2 --hydroxylamine --more --NaCN --NaN3
# Priority:
1.0
# Status:
Not Available
# Availability:
Not Available
#END_ECARDFILE
#BEGIN_ECARDFILE
# Entry_ID:
CC0659A.1
# Accession_No.:
UA0000659
# Name:
Bacterioferritin
# Alternate_Names:
BFR; Cytochrome b-1; Cytochrome b-557
# General_Function:
Transport and binding proteins; Ferritin-like
# COG_Function:
Inorganic ion transport and metabolism (code P)
# COG_ID:
COG2193 Bacterioferritin (cytochrome b1) (Evalue = 2e-87)
# Specific_Function:
May perform analogous functions in iron detoxification and storage to that of animal ferritins.
# Riley_Gene_Function:
bacterioferritin, an iron storage homoprotein and detoxification protein
# Riley_Cell_Function:
>>>
Cell processes
Adaptation to stress
Fe aquisition
||
>>>
Location of gene products
Cytoplasm
# Gene_Ontology:
>>>
Function: binding
||
>>>
Function: binding
Function: ion binding
Function: cation binding
Function: transition metal ion binding
Function: iron ion binding
Function: ferric iron binding
||
>>>
Function: metal ion binding
Function: transition metal ion binding
Function: iron ion binding
Function: ferric iron binding
||
>>>
Process: physiological process
Process: cellular physiological process
Process: transport
Process: ion transport
Process: cation transport
Process: di-, tri-valent inorganic cation transport
Process: transition metal ion transport
Process: iron ion transport
||
>>>
Process: metal ion transport
Process: transition metal ion transport
Process: iron ion transport
||
>>>
Process: localization
Process: establishment of localization
Process: transport
Process: ion transport
Process: cation transport
Process: di-, tri-valent inorganic cation transport
Process: transition metal ion transport
Process: iron ion transport
||
>>>
Process: metal ion transport
Process: transition metal ion transport
Process: iron ion transport
||
>>>
Process: cellular process
Process: cellular physiological process
Process: transport
Process: ion transport
Process: cation transport
Process: di-, tri-valent inorganic cation transport
Process: transition metal ion transport
Process: iron ion transport
||
>>>
Process: metal ion transport
Process: transition metal ion transport
Process: iron ion transport
Process: physiological process
Process: homeostasis
Process: cell homeostasis
Process: cell ion homeostasis
Process: cation homeostasis
Process: metal ion homeostasis
Process: transition metal ion homeostasis
Process: iron ion homeostasis
||
>>>
Process: di-, tri-valent inorganic cation homeostasis
Process: iron ion homeostasis
||
>>>
Process: ion homeostasis
Process: cell ion homeostasis
Process: cation homeostasis
Process: metal ion homeostasis
Process: transition metal ion homeostasis
Process: iron ion homeostasis
||
>>>
Process: di-, tri-valent inorganic cation homeostasis
Process: iron ion homeostasis
||
>>>
Process: cellular physiological process
Process: cell homeostasis
Process: cell ion homeostasis
Process: cation homeostasis
Process: metal ion homeostasis
Process: transition metal ion homeostasis
Process: iron ion homeostasis
||
>>>
Process: di-, tri-valent inorganic cation homeostasis
Process: iron ion homeostasis
||
>>>
Process: cellular process
Process: cellular physiological process
Process: cell homeostasis
Process: cell ion homeostasis
Process: cation homeostasis
Process: metal ion homeostasis
Process: transition metal ion homeostasis
Process: iron ion homeostasis
||
>>>
Process: di-, tri-valent inorganic cation homeostasis
Process: iron ion homeostasis
||
>>>
Component: Not Available
# Location:
Cytoplasm
# Blattner_Number:
b3336
# Gene_Sequence:
ATGAAAGGTGATACTAAAGTTATAAATTATCTCAACAAACTGTTGGGAAATGAGCTTGTCGCAATCAATC
AGTACTTTCTCCATGCCCGAATGTTTAAAAACTGGGGTCTCAAACGTCTCAATGATGTGGAGTATCATGA
ATCCATTGATGAGATGAAACACGCCGATCGTTATATTGAGCGCATTCTTTTTCTGGAAGGTCTTCCAAAC
TTACAGGACCTGGGCAAACTGAACATTGGTGAAGATGTTGAGGAAATGCTGCGTTCTGATCTGGCACTTG
AGCTGGATGGCGCGAAGAATTTGCGTGAGGCAATTGGTTATGCCGATAGCGTTCATGATTACGTCAGCCG
CGATATGATGATAGAAATTTTGCGTGATGAAGAAGGCCATATCGACTGGCTGGAAACGGAACTTGATCTG
ATTCAGAAGATGGGCCTGCAAAATTATCTGCAAGCACAGATCCGCGAAGAAGGTTGA
# Upstream_100_bases:
AGCTGCCGGAGTTTAAGGAGTCCGCATAAACGGAGTGTGTTTTTTGACTTACTCGTAAGCCGTTCTACTC
TTCAAAGAGTGGAAGCGAAGGAGTCAAAAA
# Blattner_No_Ontology:
Transport and binding proteins
# Gene_Position:
3464271-3464747 (Counter Clockwise)
# Centisome_Position:
74.677
# Gene_Name:
bfr
# GC_Content:
43.19%
# Metabolic_Importance:
Non_Essential
# Preceding_Gene:
hofD
# Following_Gene:
bfd
# Operon_Status:
No
# Operon_Components:
None
# Paralogues:
None
# Copy Number:
1639 Molecules/Cell In: Growth Phase, Glucose-minimal MOPS Media.
# RNA_Copy_No.:
Log phase (2max): 0.18
Stationary phase (2max): 0.67
Ref: Nature Biotech., 18, 1262-68, Dec. 2000 (PMID=11101804)
# Genbank_ID_(DNA):
G1789733
# Genbank_ID_(Protein):
AAC76361.1
# SWISS_PROT_(AC_&_ID):
$ BFR_ECOLI (P0ABD3)
# 2D_Gel_Image:
Not Available
# Other_Databases:
- ECO2DBASE: C014.3
- ECOCYC: EG10113
- EcoGene: EG10113
- EMBL: M27176
- InterPro: IPR002024; IPR009078; IPR008331; IPR009040; IPR012347
- Pfam: PF00210
- PIR: JV0032
- PRINTS: PR00601
- PROSITE: PS00549
# Pfam_Domain/Function:
PF00210 Ferritin-like domain;
# Homologues:
Not Available
# Similarity:
Belongs to the bacterioferritin family. Contains 1 ferritin-like diiron domain.
# EC_Number:
Not Available
# No._of_Amino_Acids:
158 (Translated Protein)
158 (Mature Protein)
# Molecular_Weight:
18495 18495
# Theoretical_pI:
4.43
# Theoretical_pI (Mature):
4.43
# Sequence:
// MKGDTKVINYLNKLLGNELVAINQYFLHARMFKNWGLKRLNDVEYHESIDEMKHADRYIE
// RILFLEGLPNLQDLGKLNIGEDVEEMLRSDLALELDGAKNLREAIGYADSVHDYVSRDMM
// IEILRDEEGHIDWLETELDLIQKMGLQNYLQAQIREEG
// /\
// MKGDTKVINYLNKLLGNELVAINQYFLHARMFKNWGLKRLNDVEYHESIDEMKHADRYIE
// RILFLEGLPNLQDLGKLNIGEDVEEMLRSDLALELDGAKNLREAIGYADSVHDYVSRDMM
// IEILRDEEGHIDWLETELDLIQKMGLQNYLQAQIREEG
# PROSITE_Motif:
BACTERIOFERRITIN; PATTERN. PS00549; Bacterioferritin signature. >>
extrachromosomal
Prophage genes and phage related functions
# Gene_Ontology:
>>>
Function: Not Available
||
>>>
Process: Not Available
||
>>>
Component: Not Available
# Location:
Cytoplasm
# Blattner_Number:
b0245
# Gene_Sequence:
ATGAAAACTTTACCTGCAATAACTCAGCGGGCGGTGAAGCCCTGCCTGTCACCCGTGGCTGTCTGGCAAA
TGTTACTGACACGTCTGCTGGAACAGCACTATGGTCTGACAATAAACGACACGCCATTCTGCAATGAGGC
TGTGATTAAGGAACACATCGATGCCGGTATCACCCTAGCCGATGCCGTGAATTTTCTGGTAGAAAAATAC
GAGCTGGTTCGTATCGACAGGAAGGGATTTAGCTGGCAGGAACAATCTCCTTATCTCCGGGCTGCAGACA
TTCTGCGAGCGCGGCAGGCAACTGGCTTGTTGCGGCAAAGCCGTAACAACGTAGTACGATGA
# Upstream_100_bases:
ACAACGATTTAACCTGCGAAGCCGACACCCTTGGCAGTTGCGGCTACGTATACATCGCCATTTACCCCAC
TCAGCGTTAATTACCTACACGAGAGCAAAC
# Blattner_No_Ontology:
Hypothetical, unclassified, unknown
# Gene_Position:
262552-262893 (Counter Clockwise)
# Centisome_Position:
5.666
# Gene_Name:
ykfI
# GC_Content:
51.17%
# Metabolic_Importance:
Non_Essential
# Preceding_Gene:
proA
# Following_Gene:
yafW
# Operon_Status:
Yes
# Operon_Components:
ykfI_yafW_b4504_ykfG_yafX Ref: RegulonDB http://kinich.cifn.unam.mx:8850/db/regulondb_cgi.query_simple?v_organism=ECK12&v_table=3&v_name=ykfI
# Paralogues:
b2646 (ypjF) 80; b2005 (yeeV) 58;
# Copy Number:
Unknown
# RNA_Copy_No.:
Log phase (2max): 0.08
Stationary phase (2max): 0.09
Ref: Nature Biotech., 18, 1262-68, Dec. 2000 (PMID=11101804)
# Genbank_ID_(DNA):
G1786439
# Genbank_ID_(Protein):
AAC73348.1
# SWISS_PROT_(AC_&_ID):
$ YKFI_ECOLI (P77692)
# 2D_Gel_Image:
Not Available
# Other_Databases:
- ECOCYC: EG14333
- EcoGene: EG14333
- EMBL: U70214
- InterPro: IPR009610
- Pfam: PF06755
- PIR: E64749
# Pfam_Domain/Function:
PF06755 Protein of unknown function (DUF1219);
# Homologues:
Not Available
# Similarity:
To E.coli yeeV and ypjF.
# EC_Number:
Not Available
# No._of_Amino_Acids:
113 (Translated Protein)
113 (Mature Protein)
# Molecular_Weight:
12905 12905
# Theoretical_pI:
9.68
# Theoretical_pI (Mature):
9.68
# Sequence:
// MKTLPAITQRAVKPCLSPVAVWQMLLTRLLEQHYGLTINDTPFCNEAVIKEHIDAGITLA
// DAVNFLVEKYELVRIDRKGFSWQEQSPYLRAADILRARQATGLLRQSRNNVVR
// /\
// MKTLPAITQRAVKPCLSPVAVWQMLLTRLLEQHYGLTINDTPFCNEAVIKEHIDAGITLA
// DAVNFLVEKYELVRIDRKGFSWQEQSPYLRAADILRARQATGLLRQSRNNVVR
# PROSITE_Motif:
Not Available
# Important_Sites:
Not Available
# Transmembrane:
Not Available
# Cys/Met_Content:
1.8 %Cys (Translated Protein)
1.8 %Met (Translated Protein)
3.5 %Cys+Met (Translated Protein)
1.8 %Cys (Mature Protein)
1.8 %Met (Mature Protein)
3.5 %Cys+Met (Mature Protein)
# Secondary_Structure:
>YKFI_ECOLI (Translated Protein)
MKTLPAITQRAVKPCLSPVAVWQMLLTRLLEQHYGLTINDTPFCNEAVIKEHIDAGITLA
CCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHCCEEECCCCCCCHHHHHHHHHHHHHHH
DAVNFLVEKYELVRIDRKGFSWQEQSPYLRAADILRARQATGLLRQSRNNVVR
HHHHHHHHHHHEEEECCCCCCCCCCCCCHHHHHHHCCCCCCCCCCCCCCCCCC
/\
>YKFI_ECOLI (Mature Protein)
KTLPAITQRAVKPCLSPVAVWQMLLTRLLEQHYGLTINDTPFCNEAVIKEHIDAGITLAD
CCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHCCEEECCCCCCCHHHHHHHHHHHHHHHH
AVNFLVEKYELVRIDRKGFSWQEQSPYLRAADILRARQATGLLRQSRNNVVR
HHHHHHHHHHEEEECCCCCCCCCCCCCHHHHHHHCCCCCCCCCCCCCCCCCC
# PDB_Accession:
& Not Available
# Resolution:
Not Available
# Structure_CLASS:
Mainly Alpha
# Quaternary_Structure:
Not Available
# Interacting_Partners:
Not Available
# Cofactors:
Not Available
# Metals_Ions:
Not Available
# Kcat_Value_[1/min]:
Not Available
# Specific_Activity_[micromol/min/mg]:
Not Available
# Km_Value_[mM]:
Not Available
# Substrates:
Not Available
# Products:
Not Available
# Specific_Reaction:
Not Available
# General_Reaction:
Not Available
# Inhibitor:
Not Available
# Priority:
9
# Status:
Selected, Cloned, Expressed, Purified
# Availability:
Northeast Structural Genomics Consortium
#END_ECARDFILE
#BEGIN_ECARDFILE
# Entry_ID:
CC2541A.1
# Accession_No.:
UA0002541
# Name:
Lipoprotein nlpI precursor
# Alternate_Names:
Not Available
# General_Function:
Protein prenylyltransferase
# COG_Function:
General function prediction only (code R)
# COG_ID:
COG4785 Lipoprotein NlpI, contains TPR repeats (Evalue = 1e-168)
# Specific_Function:
May be involved in cell division. Overexpression of nlpI results in the loss of the rod morphology and the formation of single prolate ellipsoids and pairs of prolate ellipsoids joined by partial constrictions.
# Riley_Gene_Function:
NlpI lipoprotein believed to be involved in cell division
# Riley_Cell_Function:
>>>
Cell processes
Cell division
# Gene_Ontology:
>>>
Function: binding
||
>>>
Process: Not Available
||
>>>
Component: Not Available
# Location:
Attached To The Membrane By A Lipid Anchor
# Blattner_Number:
b3163
# Gene_Sequence:
ATGAAGCCTTTTTTGCGCTGGTGTTTCGTTGCGACAGCACTTACGCTTGCAGGATGCAGTAATACTTCCT
GGCGTAAAAGTGAAGTCCTCGCGGTACCATTGCAACCGACTTTACAGCAGGAAGTGATTCTGGCACGTAT
GGAACAAATCCTTGCCAGTCGGGCTTTAACCGATGACGAACGCGCACAGCTTTTATATGAGCGCGGAGTG
TTGTATGATAGTCTCGGTCTGAGGGCATTAGCGCGTAACGATTTTTCGCAAGCGCTGGCAATCCGACCGG
ATATGCCTGAAGTATTCAATTACTTAGGCATATATTTAACGCAGGCAGGCAATTTTGATGCTGCCTATGA
AGCGTTTGATTCTGTACTTGAGCTTGATCCAACTTACAACTACGCGCACTTGAATCGCGGGATCGCATTA
TATTACGGCGGTCGTGACAAGTTAGCGCAAGATGATCTGCTGGCGTTTTATCAAGACGATCCCAATGATC
CTTTCCGTAGTCTGTGGCTTTATCTCGCCGAGCAGAAGCTCGATGAGAAGCAGGCTAAAGAAGTGTTGAA
ACAGCACTTCGAAAAATCGGATAAGGAACAGTGGGGATGGAACATTGTCGAGTTCTACCTGGGCAACATT
AGCGAACAAACGTTAATGGAAAGGCTCAAGGCGGACGCAACGGATAACACCTCGCTCGCTGAGCATCTCA
GTGAAACCAACTTCTATTTAGGTAAGTACTACCTAAGTCTGGGGGATTTGGACAGCGCCACGGCACTGTT
CAAACTGGCGGTTGCCAACAACGTTCATAACTTTGTTGAGCACCGATACGCATTGTTGGAATTATCGCTC
CTGGGCCAGGACCAAGATGACCTGGCAGAATCGGACCAGCAATAG
# Upstream_100_bases:
TTTGCCCTCCGCTGCGGCGGGGGGCTTTTAACCGGGCAGGACGCCTTGTTAGCAACCGGGAACAGGACGT
TCATTCAACCGTGGTCTTCGGGAGTGGGAA
# Blattner_No_Ontology:
Putative regulatory proteins
# Gene_Position:
3306062-3306946 (Counter Clockwise)
# Centisome_Position:
71.275
# Gene_Name:
nlpI
# GC_Content:
48.25%
# Metabolic_Importance:
Non_Essential
# Preceding_Gene:
deaD
# Following_Gene:
pnp
# Operon_Status:
No
# Operon_Components:
None
# Paralogues:
None
# Copy Number:
Unknown
# RNA_Copy_No.:
Log phase (2max): 0.96
Stationary phase (2max): 0.28
Ref: Nature Biotech., 18, 1262-68, Dec. 2000 (PMID=11101804)
# Genbank_ID_(DNA):
G1789554
# Genbank_ID_(Protein):
AAC76197.1
# SWISS_PROT_(AC_&_ID):
$ NLPI_ECOLI (P0AFB1)
# 2D_Gel_Image:
Not Available
# Other_Databases:
- ECOCYC: EG12371
- EcoGene: EG12371
- EMBL: U18997
- InterPro: IPR011990; IPR001440; IPR013026
- Pfam: PF00515
- PIR: G65106
- PROSITE: PS00013
# Pfam_Domain/Function:
PF00515 Tetratricopeptide repeat;
# Homologues:
Not Available
# Similarity:
Contains 3 TPR repeats.
# EC_Number:
Not Available
# No._of_Amino_Acids:
294 (Translated Protein)
269 (Mature Protein)
# Molecular_Weight:
33621 30779
# Theoretical_pI:
4.35
# Theoretical_pI (Mature):
4.22
# Sequence:
// MKPFLRWCFVATALTLAGCSNTSWRKSEVLAVPLQPTLQQEVILARMEQILASRALTDDE
// RAQLLYERGVLYDSLGLRALARNDFSQALAIRPDMPEVFNYLGIYLTQAGNFDAAYEAFD
// SVLELDPTYNYAHLNRGIALYYGGRDKLAQDDLLAFYQDDPNDPFRSLWLYLAEQKLDEK
// QAKEVLKQHFEKSDKEQWGWNIVEFYLGNISEQTLMERLKADATDNTSLAEHLSETNFYL
// GKYYLSLGDLDSATALFKLAVANNVHNFVEHRYALLELSLLGQDQDDLAESDQQ
// /\
// KSEVLAVPLQPTLQQEVILARMEQILASRALTDDERAQLLYERGVLYDSLGLRALARNDF
// SQALAIRPDMPEVFNYLGIYLTQAGNFDAAYEAFDSVLELDPTYNYAHLNRGIALYYGGR
// DKLAQDDLLAFYQDDPNDPFRSLWLYLAEQKLDEKQAKEVLKQHFEKSDKEQWGWNIVEF
// YLGNISEQTLMERLKADATDNTSLAEHLSETNFYLGKYYLSLGDLDSATALFKLAVANNV
// HNFVEHRYALLELSLLGQDQDDLAESDQQ
# PROSITE_Motif:
PROKAR_LIPOPROTEIN; RULE. PS00013; Prokaryotic membrane lipoprotein lipid attachment site. {DERK}(6)-[LIVMFWSTAG](2)-[LIVMFYSTAGCQ]-[AGS]-C. Additional rules:RU (1) The sequence must start with Met.RU (2) The cysteine must be between positions 15 and 35 of the sequence inRU consideration.RU (3) There must be at least one charged residue (Lys or Arg) in the firstRU seven residues of the sequence. PDOC00013; //
# Important_Sites:
Signal Chain 1 18
LIPID Site 19 19 N-ACYL DIGLYCERIDE
# Transmembrane:
Not Available
# Cys/Met_Content:
0.7 %Cys (Translated Protein)
1.4 %Met (Translated Protein)
2.0 %Cys+Met (Translated Protein)
0.0 %Cys (Mature Protein)
1.1 %Met (Mature Protein)
1.1 %Cys+Met (Mature Protein)
# Secondary_Structure:
>NLPI_ECOLI (Translated Protein)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HHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHCCHHHHCCC
/\
>NLPI_ECOLI (Mature Protein)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HHHHHCCCCCCHHHHHHHHHHHHHHHHCCHHHHCCC
# PDB_Accession:
& Not Available
# Resolution:
Not Available
# Structure_CLASS:
Mainly Alpha
# Quaternary_Structure:
Not Available
# Interacting_Partners:
Unknown
# Cofactors:
Not Available
# Metals_Ions:
Not Available
# Kcat_Value_[1/min]:
Not Available
# Specific_Activity_[micromol/min/mg]:
Not Available
# Km_Value_[mM]:
Not Available
# Substrates:
Not Available
# Products:
Not Available
# Specific_Reaction:
Not Available
# General_Reaction:
Not Available
# Inhibitor:
Not Available
# Priority:
3.1
# Status:
Not Available
# Availability:
Not Available
#END_ECARDFILE
#BEGIN_ECARDFILE
# Entry_ID:
CC2061A.1
# Accession_No.:
UA0002061
# Name:
Curved DNA-binding protein
# Alternate_Names:
Not Available
# General_Function:
Cellular processes; Chaperone J-domain; HSP40/DnaJ peptide-binding domain
# COG_Function:
Posttranslational modification, protein turnover, chaperones (code O)
# COG_ID:
COG2214 DnaJ-class molecular chaperone (Evalue = 1e-179)
# Specific_Function:
DNA-binding protein that preferentially recognizes a curved DNA sequence. It is probably a functional analog of dnaJ; displays overlapping activities with dnaJ, but functions under different conditions, probably acting as a molecular chaperone in an adaptive response to environmental stresses other than heat shock. Lacks autonomous chaperone activity; binds native substrates and targets them for recognition by dnaK. Its activity is inhibited by the binding of cbpM.
# Riley_Gene_Function:
curved DNA-binding protein, DnaJ homologue that functions as a co-chaperone of DnaK
# Riley_Cell_Function:
>>>
Information transfer
Protein related
Chaperoning, folding
||
>>>
Information transfer
Protein related
Nucleoproteins, basic proteins
||
>>>
Location of gene products
Cytoplasm
# Gene_Ontology:
>>>
Function: binding
Function: protein binding
Function: unfolded protein binding
||
>>>
Function: binding
Function: protein binding
Function: heat shock protein binding
||
>>>
Function: binding
Function: protein binding
Function: heat shock protein binding
||
>>>
Process: physiological process
Process: metabolism
Process: macromolecule metabolism
Process: protein metabolism
Process: cellular protein metabolism
Process: protein folding
||
>>>
Process: cellular macromolecule metabolism
Process: cellular protein metabolism
Process: protein folding
||
>>>
Process: cellular metabolism
Process: cellular macromolecule metabolism
Process: cellular protein metabolism
Process: protein folding
||
>>>
Process: primary metabolism
Process: protein metabolism
Process: cellular protein metabolism
Process: protein folding
||
>>>
Process: cellular physiological process
Process: cellular metabolism
Process: cellular macromolecule metabolism
Process: cellular protein metabolism
Process: protein folding
||
>>>
Process: cellular process
Process: cellular physiological process
Process: cellular metabolism
Process: cellular macromolecule metabolism
Process: cellular protein metabolism
Process: protein folding
Process: physiological process
Process: metabolism
Process: macromolecule metabolism
Process: protein metabolism
Process: cellular protein metabolism
Process: protein folding
||
>>>
Process: cellular macromolecule metabolism
Process: cellular protein metabolism
Process: protein folding
||
>>>
Process: cellular metabolism
Process: cellular macromolecule metabolism
Process: cellular protein metabolism
Process: protein folding
||
>>>
Process: primary metabolism
Process: protein metabolism
Process: cellular protein metabolism
Process: protein folding
||
>>>
Process: cellular physiological process
Process: cellular metabolism
Process: cellular macromolecule metabolism
Process: cellular protein metabolism
Process: protein folding
||
>>>
Process: cellular process
Process: cellular physiological process
Process: cellular metabolism
Process: cellular macromolecule metabolism
Process: cellular protein metabolism
Process: protein folding
||
>>>
Component: Not Available
# Location:
Cytoplasm
# Blattner_Number:
b1000
# Gene_Sequence:
ATGGAATTAAAGGATTATTACGCCATCATGGGCGTGAAACCGACGGACGATCTCAAGACAATCAAGACCG
CCTATCGTCGACTTGCCCGCAAATACCATCCTGATGTCAGCAAAGAACCGGATGCCGAAGCCCGCTTCAA
AGAGGTCGCTGAAGCCTGGGAAGTGTTAAGTGATGAACAACGTCGCGCTGAGTATGATCAGATGTGGCAA
CATCGCAACGATCCGCAATTTAACCGTCAGTTCCACCATGGCGACGGTCAGAGTTTTAACGCCGAAGATT
TTGACGATATCTTCTCGTCAATTTTCGGTCAGCATGCCCGCCAGAGCCGTCAACGCCCCGCCACACGCGG
CCACGATATTGAAATCGAAGTGGCGGTATTCCTCGAAGAAACGCTTACTGAGCATAAGCGTACCATCAGC
TATAACCTGCCGGTTTATAACGCCTTTGGCATGATCGAACAGGAAATTCCGAAAACGCTGAATGTGAAGA
TCCCGGCGGGCGTCGGCAATGGTCAACGCATCCGTCTGAAAGGCCAGGGGACGCCGGGCGAAAACGGCGG
TCCAAATGGCGATTTGTGGCTGGTGATTCATATTGCGCCACATCCGCTGTTTGATATTGTCGGCCAGGAT
CTGGAAATTGTGGTGCCGGTTAGCCCGTGGGAAGCGGCGCTGGGTGCTAAAGTCACCGTTCCAACACTGA
AAGAAAGCATTTTGCTGACTATCCCGCCAGGCAGCCAGGCCGGGCAACGATTGCGCGTTAAAGGCAAAGG
TCTGGTGAGCAAAAAACAGACCGGCGATCTGTATGCGGTACTGAAAATCGTGATGCCGCCGAAACCGGAT
GAAAACACTGCCGCGCTGTGGCAGCAACTGGCAGACGCCCAGTCGTCTTTTGATCCACGTAAAGATTGGG
GGAAAGCATAA
# Upstream_100_bases:
TTCTGTGTTGGCATATGAAATTTTGAGGATTACCCTACACTTATAGGAGTTACCTTACAGGGGTTCCTTC
AATTTGTGTTGATTTACGCGAGATAACGCT
# Blattner_No_Ontology:
Cell processes incl. adaptation, protection
# Gene_Position:
1062078-1062998 (Counter Clockwise)
# Centisome_Position:
22.911
# Gene_Name:
cbpA
# GC_Content:
52.88%
# Metabolic_Importance:
Non_Essential
# Preceding_Gene:
yccD
# Following_Gene:
yccE
# Operon_Status:
Yes
# Operon_Components:
yccD_cbpA Ref: RegulonDB http://kinich.cifn.unam.mx:8850/db/regulondb_cgi.query_simple?v_organism=ECK12&v_table=3&v_name=cbpA
# Paralogues:
b0015 (dnaJ) 33;
# Copy Number:
Unknown
# RNA_Copy_No.:
Log phase (2max): 0.2
Stationary phase (2max): 0.4
Ref: Nature Biotech., 18, 1262-68, Dec. 2000 (PMID=11101804)
# Genbank_ID_(DNA):
G1787235
# Genbank_ID_(Protein):
AAC74085.1
# SWISS_PROT_(AC_&_ID):
$ CBPA_ECOLI (P36659)
# 2D_Gel_Image:
Not Available
# Other_Databases:
- ECOCYC: EG12193
- EcoGene: EG12193
- EMBL: D16500
- InterPro: IPR002939; IPR001623; IPR008971; IPR003095
- Pfam: PF00226; PF01556
- PIR: F64841
- PRINTS: PR00625
- PROSITE: PS00636
# Pfam_Domain/Function:
PF00226 DnaJ domain; PF01556 DnaJ C terminal region;
# Homologues:
Organism=Homo sapiens, GI5453690, Length=340, Positives=43%, Blast Score=109
Organism=Homo sapiens, GI6631085, Length=337, Positives=42%, Blast Score=104
Organism=Homo sapiens, GI7706495, Length=358, Positives=47%, Blast Score=103
Organism=Homo sapiens, GI21361413, Length=348, Positives=41%, Blast Score=98.2
Organism=Homo sapiens, GI9558755, Length=223, Positives=59%, Blast Score=85.1
Organism=Homo sapiens, GI39204547, Length=316, Positives=41%, Blast Score=84.3
Organism=Homo sapiens, GI33354249, Length=397, Positives=46%, Blast Score=78.2
Organism=Homo sapiens, GI31542539, Length=480, Positives=58%, Blast Score=77.4
Organism=Homo sapiens, GI4504511, Length=397, Positives=56%, Blast Score=74.7
Organism=Homo sapiens, GI31542691, Length=294, Positives=56%, Blast Score=70.9
Organism=Homo sapiens, GI41054844, Length=375, Positives=58%, Blast Score=70.5
Organism=Homo sapiens, GI5031741, Length=412, Positives=53%, Blast Score=70.1
Organism=Homo sapiens, GI51459248, Length=1005, Positives=68%, Blast Score=69.7
Organism=Homo sapiens, GI4885495, Length=241, Positives=56%, Blast Score=69.7
Organism=Homo sapiens, GI17388799, Length=326, Positives=56%, Blast Score=69.7
Organism=Homo sapiens, GI41149466, Length=189, Positives=56%, Blast Score=68.2
Organism=Homo sapiens, GI47777312, Length=145, Positives=54%, Blast Score=66.6
Organism=Homo sapiens, GI23503241, Length=232, Positives=57%, Blast Score=65.1
Organism=Homo sapiens, GI21553335, Length=309, Positives=58%, Blast Score=64.7
Organism=Caenorhabditis elegans, GI17553096, Length=456, Positives=42%, Blast Score=110
Organism=Caenorhabditis elegans, GI17553098, Length=446, Positives=42%, Blast Score=110
Organism=Caenorhabditis elegans, GI17534355, Length=331, Positives=43%, Blast Score=101
Organism=Caenorhabditis elegans, GI25152100, Length=249, Positives=42%, Blast Score=85.1
Organism=Caenorhabditis elegans, GI17507263, Length=402, Positives=57%, Blast Score=71.2
Organism=Caenorhabditis elegans, GI17532583, Length=813, Positives=53%, Blast Score=68.6
Organism=Caenorhabditis elegans, GI17551190, Length=491, Positives=60%, Blast Score=63.9
Organism=Saccharomyces cerevisiae, GI14318504, Length=511, Positives=52%, Blast Score=81.6
Organism=Saccharomyces cerevisiae, GI6324265, Length=409, Positives=52%, Blast Score=79.0
Organism=Saccharomyces cerevisiae, GI6323119, Length=459, Positives=46%, Blast Score=71.6
Organism=Saccharomyces cerevisiae, GI6320888, Length=391, Positives=58%, Blast Score=69.7
Organism=Mus musculus, GI9055242, Length=340, Positives=43%, Blast Score=107
Organism=Mus musculus, GI27754067, Length=358, Positives=46%, Blast Score=101
Organism=Mus musculus, GI21313156, Length=337, Positives=41%, Blast Score=99.0
Organism=Mus musculus, GI9845259, Length=348, Positives=41%, Blast Score=97.4
Organism=Mus musculus, GI21312512, Length=337, Positives=40%, Blast Score=94.7
Organism=Mus musculus, GI31560495, Length=222, Positives=62%, Blast Score=84.0
Organism=Mus musculus, GI29648322, Length=316, Positives=42%, Blast Score=83.2
Organism=Mus musculus, GI11496255, Length=397, Positives=46%, Blast Score=81.3
Organism=Mus musculus, GI31560085, Length=480, Positives=60%, Blast Score=75.1
Organism=Mus musculus, GI6680297, Length=397, Positives=56%, Blast Score=73.9
Organism=Mus musculus, GI51772581, Length=217, Positives=58%, Blast Score=73.9
Organism=Mus musculus, GI51710974, Length=392, Positives=56%, Blast Score=73.9
Organism=Mus musculus, GI11496245, Length=220, Positives=57%, Blast Score=72.0
Organism=Mus musculus, GI38086711, Length=397, Positives=53%, Blast Score=71.6
Organism=Mus musculus, GI20878421, Length=379, Positives=56%, Blast Score=70.9
Organism=Mus musculus, GI6680299, Length=242, Positives=55%, Blast Score=70.5
Organism=Mus musculus, GI31982701, Length=376, Positives=56%, Blast Score=70.5
Organism=Mus musculus, GI9789937, Length=412, Positives=53%, Blast Score=70.1
Organism=Mus musculus, GI27261818, Length=772, Positives=65%, Blast Score=68.6
Organism=Mus musculus, GI9910416, Length=227, Positives=56%, Blast Score=68.2
Organism=Mus musculus, GI51704982, Length=242, Positives=55%, Blast Score=67.0
Organism=Mus musculus, GI6754736, Length=242, Positives=54%, Blast Score=66.2
Organism=Drosophila melanogaster, GI19920464, Length=354, Positives=45%, Blast Score=108
Organism=Drosophila melanogaster, GI45549272, Length=447, Positives=42%, Blast Score=107
Organism=Drosophila melanogaster, GI45552811, Length=507, Positives=42%, Blast Score=107
Organism=Drosophila melanogaster, GI45552813, Length=520, Positives=42%, Blast Score=107
Organism=Drosophila melanogaster, GI24658555, Length=334, Positives=43%, Blast Score=105
Organism=Drosophila melanogaster, GI24658562, Length=334, Positives=43%, Blast Score=105
Organism=Drosophila melanogaster, GI24580827, Length=346, Positives=40%, Blast Score=98.6
Organism=Drosophila melanogaster, GI18858081, Length=342, Positives=43%, Blast Score=89.7
Organism=Drosophila melanogaster, GI24668492, Length=128, Positives=68%, Blast Score=69.3
Organism=Drosophila melanogaster, GI24646556, Length=403, Positives=51%, Blast Score=69.3
Organism=Drosophila melanogaster, GI21357547, Length=403, Positives=51%, Blast Score=69.3
Organism=Drosophila melanogaster, GI24646560, Length=403, Positives=51%, Blast Score=69.3
Organism=Drosophila melanogaster, GI24646562, Length=403, Positives=51%, Blast Score=69.3
Organism=Drosophila melanogaster, GI24646558, Length=403, Positives=51%, Blast Score=69.3
Organism=Drosophila melanogaster, GI21358273, Length=370, Positives=47%, Blast Score=68.6
Organism=Drosophila melanogaster, GI24654070, Length=259, Positives=51%, Blast Score=64.3
Organism=Drosophila melanogaster, GI24654066, Length=259, Positives=51%, Blast Score=64.3
Organism=Drosophila melanogaster, GI24654068, Length=259, Positives=51%, Blast Score=64.3
Organism=Drosophila melanogaster, GI24654072, Length=259, Positives=51%, Blast Score=64.3
# Similarity:
Contains 1 J domain.
# EC_Number:
Not Available
# No._of_Amino_Acids:
306 (Translated Protein)
306 (Mature Protein)
# Molecular_Weight:
34455 34455
# Theoretical_pI:
6.81
# Theoretical_pI (Mature):
6.81
# Sequence:
// MELKDYYAIMGVKPTDDLKTIKTAYRRLARKYHPDVSKEPDAEARFKEVAEAWEVLSDEQ
// RRAEYDQMWQHRNDPQFNRQFHHGDGQSFNAEDFDDIFSSIFGQHARQSRQRPATRGHDI
// EIEVAVFLEETLTEHKRTISYNLPVYNAFGMIEQEIPKTLNVKIPAGVGNGQRIRLKGQG
// TPGENGGPNGDLWLVIHIAPHPLFDIVGQDLEIVVPVSPWEAALGAKVTVPTLKESILLT
// IPPGSQAGQRLRVKGKGLVSKKQTGDLYAVLKIVMPPKPDENTAALWQQLADAQSSFDPR
// KDWGKA
// /\
// MELKDYYAIMGVKPTDDLKTIKTAYRRLARKYHPDVSKEPDAEARFKEVAEAWEVLSDEQ
// RRAEYDQMWQHRNDPQFNRQFHHGDGQSFNAEDFDDIFSSIFGQHARQSRQRPATRGHDI
// EIEVAVFLEETLTEHKRTISYNLPVYNAFGMIEQEIPKTLNVKIPAGVGNGQRIRLKGQG
// TPGENGGPNGDLWLVIHIAPHPLFDIVGQDLEIVVPVSPWEAALGAKVTVPTLKESILLT
// IPPGSQAGQRLRVKGKGLVSKKQTGDLYAVLKIVMPPKPDENTAALWQQLADAQSSFDPR
// KDWGKA
# PROSITE_Motif:
DNAJ_1; PATTERN. PS00636; Nt-dnaJ domain signature. [FY]-x(2)-[LIVMA]-x(3)-[FYWHNT]-[DENQSA]-x-L-x-[DN]-x(3)-[KR]-x(2)-[FYI]. PDOC00553; //
# Important_Sites:
Not Available
# Transmembrane:
Not Available
# Cys/Met_Content:
0.0 %Cys (Translated Protein)
1.6 %Met (Translated Protein)
1.6 %Cys+Met (Translated Protein)
0.0 %Cys (Mature Protein)
1.6 %Met (Mature Protein)
1.6 %Cys+Met (Mature Protein)
# Secondary_Structure_(PDB):
AKQDYYEILGVSKTAEEREIRKAYKRLAMKYHPDRNQGDKEAEAKFKEIKE
CCCCCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHH
AYEVLTDSQKRAAYDQYGHAAFEQ
HHHHCCCCHHHHHCCCCCCCCCCC
# PDB_Accession:
& Model Based on 1XBL (2-72)
# Resolution:
Not Available
# Structure_CLASS:
Mainly Alpha
# Quaternary_Structure:
monomeric multimer; chaperone with DnaK; curved DNA-binding protein
# Interacting_Partners:
Not Available
# Cofactors:
Not Available
# Metals_Ions:
Not Available
# Kcat_Value_[1/min]:
Not Available
# Specific_Activity_[micromol/min/mg]:
Not Available
# Km_Value_[mM]:
Not Available
# Substrates:
Not Available
# Products:
Not Available
# Specific_Reaction:
Not Available
# General_Reaction:
Not Available
# Inhibitor:
Not Available
# Priority:
1.0
# Status:
Not Available
# Availability:
Not Available
#END_ECARDFILE
#BEGIN_ECARDFILE
# Entry_ID:
CC2950A.1
# Accession_No.:
UA0002950
# Name:
Probable pyruvate-flavodoxin oxidoreductase
# Alternate_Names:
Not Available
# General_Function:
Energy metabolism; Thiamin diphosphate-binding fold (THDP-binding) (2); Transketolase C-terminal domain-like; Pyruvate-ferredoxin oxidoreductase, PFOR, domain III; 4Fe-4S ferredoxins
# COG_Function:
Energy production and conversion (code C)
# COG_ID:
COG0674 Pyruvate:ferredoxin oxidoreductase and related 2-oxoacid:ferredoxin oxidoreductases, alpha subunit (Evalue = 0.0)
# Specific_Function:
Oxidoreductase required for the transfer of electrons from pyruvate to flavodoxin (Potential). Gene yydbK is regulated by transcriptional attenuation. This fused predicted pyruvate-flavodoxin oxidoreductase has some unknown functions and FeS binding protein (aa817-1174).
# Riley_Gene_Function:
fused predicted pyruvate-flavodoxin oxidoreductase: conserved protein; FeS binding protein
# Riley_Cell_Function:
>>>
Metabolism
Central intermediary metabolism
Unassigned reversible reactions
# Gene_Ontology:
>>>
Function: binding
Function: ion binding
Function: cation binding
Function: transition metal ion binding
Function: iron ion binding
||
>>>
Function: metal ion binding
Function: transition metal ion binding
Function: iron ion binding
||
>>>
Function: catalytic activity
Function: oxidoreductase activity
||
>>>
Function: catalytic activity
Function: oxidoreductase activity
||
>>>
Function: binding
Function: ion binding
Function: cation binding
Function: transition metal ion binding
Function: iron ion binding
||
>>>
Function: metal ion binding
Function: transition metal ion binding
Function: iron ion binding
||
>>>
Function: catalytic activity
||
>>>
Process: physiological process
Process: metabolism
Process: cellular metabolism
Process: generation of precursor metabolites and energy
Process: electron transport
||
>>>
Process: cellular physiological process
Process: transport
Process: electron transport
||
>>>
Process: cellular metabolism
Process: generation of precursor metabolites and energy
Process: electron transport
||
>>>
Process: localization
Process: establishment of localization
Process: transport
Process: electron transport
||
>>>
Process: cellular process
Process: cellular physiological process
Process: transport
Process: electron transport
||
>>>
Process: cellular metabolism
Process: generation of precursor metabolites and energy
Process: electron transport
Process: physiological process
Process: metabolism
Process: cellular metabolism
Process: generation of precursor metabolites and energy
Process: electron transport
||
>>>
Process: cellular physiological process
Process: transport
Process: electron transport
||
>>>
Process: cellular metabolism
Process: generation of precursor metabolites and energy
Process: electron transport
||
>>>
Process: localization
Process: establishment of localization
Process: transport
Process: electron transport
||
>>>
Process: cellular process
Process: cellular physiological process
Process: transport
Process: electron transport
||
>>>
Process: cellular metabolism
Process: generation of precursor metabolites and energy
Process: electron transport
Process: physiological process
Process: metabolism
Process: cellular metabolism
Process: generation of precursor metabolites and energy
Process: electron transport
||
>>>
Process: cellular physiological process
Process: transport
Process: electron transport
||
>>>
Process: cellular metabolism
Process: generation of precursor metabolites and energy
Process: electron transport
||
>>>
Process: localization
Process: establishment of localization
Process: transport
Process: electron transport
||
>>>
Process: cellular process
Process: cellular physiological process
Process: transport
Process: electron transport
||
>>>
Process: cellular metabolism
Process: generation of precursor metabolites and energy
Process: electron transport
Process: physiological process
Process: metabolism
Process: cellular metabolism
Process: generation of precursor metabolites and energy
Process: electron transport
||
>>>
Process: cellular physiological process
Process: transport
Process: electron transport
||
>>>
Process: cellular metabolism
Process: generation of precursor metabolites and energy
Process: electron transport
||
>>>
Process: localization
Process: establishment of localization
Process: transport
Process: electron transport
||
>>>
Process: cellular process
Process: cellular physiological process
Process: transport
Process: electron transport
||
>>>
Process: cellular metabolism
Process: generation of precursor metabolites and energy
Process: electron transport
||
>>>
Component: Not Available
# Location:
Cytoplasm
# Blattner_Number:
b1378
# Gene_Sequence:
ATGATTACTATTGACGGTAATGGCGCGGTTGCTTCGGTCGCATTTCGCACCAGTGAAGTTATCGCCATCT
ACCCTATTACCCCCAGTTCCACGATGGCAGAACAGGCTGATGCCTGGGCCGGAAACGGCTTAAAGAACGT
TTGGGGAGACACACCACGCGTGGTTGAAATGCAGTCGGAAGCGGGTGCTATCGCTACCGTGCATGGCGCT
TTGCAGACGGGTGCCCTTTCAACATCGTTTACGTCATCGCAGGGTTTGCTGCTGATGATCCCGACGCTGT
ACAAACTGGCAGGCGAACTAACACCGTTTGTCCTGCATGTAGCGGCACGTACCGTTGCCACACATGCACT
CTCTATTTTTGGCGATCATTCCGACGTTATGGCGGTGCGCCAGACGGGTTGCGCGATGTTGTGTGCAGCA
AACGTCCAGGAAGCGCAAGACTTTGCTCTCATTTCGCAAATCGCGACGCTGAAAAGCCGCGTGCCATTTA
TTCATTTCTTTGATGGTTTCCGCACGTCCCACGAAATCAATAAAATTGTCCCGCTGGCCGATGACACGAT
TCTTGATCTCATGCCGCAGGTCGAAATTGATGCTCATCGCGCCCGGGCACTCAACCCGGAACATCCGGTG
ATCCGCGGTACGTCCGCCAATCCTGACACTTATTTCCAGTCTCGCGAAGCCACCAACCCATGGTACAACG
CGGTCTATGACCATGTTGAACAGGCGATGAATGATTTCTCTGCCGCGACAGGTCGTCAGTATCAGCCGTT
TGAATATTACGGGCATCCGCAAGCGGAACGGGTGATTATCCTGATGGGCTCTGCCATTGGCACCTGTGAA
GAAGTGGTTGATGAATTGCTAACCCGTGGCGAAAAAGTTGGCGTGCTGAAAGTTCGCCTGTACCGCCCCT
TCTCCGCTAAACATTTACTGCAAGCTCTGCCGGGATCCGTACGCAGCGTGGCGGTACTGGACAGAACCAA
AGAACCCGGTGCCCAGGCAGAACCGCTCTATCTGGATGTAATGACCGCACTGGCAGAAGCCTTTAATAAT
GGCGAGCGCGAAACTCTGCCCCGTGTCATTGGTGGGCGCTATGGTCTTTCATCCAAAGAATTTGGCCCAG
ACTGTGTACTGGCGGTATTTGCCGAGCTCAACGCGGCTAAACCGAAAGCGCGCTTTACGGTTGGTATTTA
CGATGATGTGACCAATCTGTCACTGCCGTTGCCGGAAAACACCCTGCCAAACTCGGCGAAACTGGAAGCC
TTGTTTTATGGCCTTGGTAGTGATGGCAGCGTTTCCGCGACCAAAAACAATATCAAGATTATCGGTAATT
CCACGCCGTGGTACGCACAGGGCTATTTTGTTTACGACTCCAAAAAGGCGGGCGGCCTGACGGTTTCTCA
CCTTCGAGTGAGCGAACAGCCGATTCGTTCCGCTTATCTCATTTCCCAGGCTGATTTTGTTGGCTGCCAC
CAGTTGCAGTTTATCGATAAATATCAGATGGCTGAGCGTTTAAAACCTGGCGGCATTTTCCTGCTCAACA
CGCCGTACAGCGCAGATGAAGTGTGGTCGCGCTTGCCGCAAGAAGTTCAGGCCGTGTTAAACCAGAAAAA
AGCGCGCTTCTATGTGATTAACGCGGCGAAAATCGCCCGCGAATGTGGCCTGGCGGCCCGTATTAATACC
GTCATGCAGATGGCTTTTTTCCATCTGACGCAAATTCTGCCTGGCGATAGCGCCCTCGCAGAATTGCAGG
GTGCGATTGCCAAAAGTTACAGTAGCAAAGGCCAGGATCTGGTGGAACGCAACTGGCAGGCTCTGGCGCT
GGCGCGTGAATCCGTAGAAGAAGTTCCGTTGCAACCGGTAAATCCGCACAGCGCCAATCGACCGCCAGTG
GTTTCCGATGCCGCCCCTGATTTCGTGAAAACCGTAACCGCTGCGATGCTCGCCGGGCTTGGTGACGCCC
TCCCCGTTTCGGCGCTGCCGCCAGACGGCACCTGGCCGATGGGCACTACGCGCTGGGAAAAACGCAATAT
CGCCGAAGAGATCCCCATCTGGAAAGAGGAACTCTGTACCCAATGTAACCACTGCGTTGCCGCTTGCCCA
CACTCAGCTATTCGCGCAAAAGTGGTGCCGCCTGAAGCGATGGAAAACGCCCCTGCCAGCCTGCATTCGC
TGGATGTGAAATCGCGTGATATGCGCGGGCAGAAATATGTCTTGCAGGTGGCACCGGAAGATTGCACCGG
TTGTAACCTGTGCGTCGAAGTTTGCCCGGCGAAAGACCGTCAGAATCCAGAGATTAAAGCCATCAATATG
ATGTCTCGCCTGGAACATGTCGAAGAAGAGAAAATCAATTACGATTTCTTCCTCAACCTGCCAGAAATCG
ACCGTAGCAAACTGGAACGTATTGATATTCGTACATCGCAGCTGATTACACCGCTGTTTGAATATTCAGG
TGCTTGCTCCGGTTGTGGCGAGACGCCGTATATTAAATTACTGACTCAGCTCTATGGCGACCGGATGTTG
ATCGCTAACGCCACTGGCTGTTCTTCAATTTATGGCGGTAACCTGCCCTCTACACCGTATACCACCGATG
CCAACGGTCGTGGGCCGGCATGGGCGAACTCTCTATTTGAAGATAATGCCGAATTTGGCCTTGGTTTCCG
CCTGACGGTCGATCAACACCGTGTCCGCGTGCTGCGTCTGCTGGATCAATTTGCCGATAAAATCCCGGCG
GAATTACTGACGGCGTTGAAATCAGACGCCACGCCAGAGGTTCGTCGTGAACAGGTTGCAGCTTTACGCC
AGCAACTCAACGATGTTGCCGAAGCACATGAACTGCTACGTGATGCAGATGCACTGGTGGAAAAATCAAT
CTGGCTGATTGGTGGTGATGGCTGGGCTTACGATATCGGCTTTGGCGGTCTGGATCATGTATTGAGTTTG
ACGGAAAACGTCAACATTCTGGTGCTGGATACGCAATGCTATTCCAACACCGGTGGTCAGGCGTCGAAAG
CGACACCGCTGGGTGCAGTAACTAAATTTGGCGAGCACGGCAAACGTAAAGCGCGTAAAGATCTTGGCGT
CAGTATGATGATGTACGGTCATGTTTATGTGGCGCAGATTTCTCTCGGCGCGCAGCTGAACCAGACGGTG
AAAGCGATTCAGGAAGCGGAAGCGTATCCGGGGCCATCGCTGATCATTGCTTATAGCCCGTGTGAAGAGC
ATGGTTACGATCTGGCACTCAGCCACGACCAGATGCGCCAACTCACAGCTACCGGCTTCTGGCCGCTATA
TCGCTTTGATCCGCGTCGTGCCGATGAAGGCAAACTGCCGCTGGCCTTGGATTCACGCCCGCCGTCAGAA
GCACCGGAAGAAACGTTACTTCACGAGCAACGTTTCCGTCGGCTGAATTCGCAGCAGCCAGAAGTGGCAG
AACAGTTATGGAAAGATGCTGCAGCTGATTTGCAAAAACGCTATGACTTCCTGGCACAAATGGCCGGAAA
AGCGGAAAAAAGCAACACCGATTAA
# Upstream_100_bases:
GCGAAAATGCAGAAGAAAGCCATTTGCTAAAATTGAAAGATTACTACTGGGCGCGCAGCAATTTCGTGCG
CCCCTCATTTGCGCAATGTAAGGGTGTCAT
# Blattner_No_Ontology:
Putative enzymes
# Gene_Position:
1435284-1438808 (Counter Clockwise)
# Centisome_Position:
31.011
# Gene_Name:
ydbK
# GC_Content:
53.25%
# Metabolic_Importance:
Unknown
# Preceding_Gene:
tke8
# Following_Gene:
ydbJ
# Operon_Status:
No
# Operon_Components:
None
# Paralogues:
None
# Copy Number:
Unknown
# RNA_Copy_No.:
Log phase (2max): 0.1
Stationary phase (2max): 0.11
Ref: Nature Biotech., 18, 1262-68, Dec. 2000 (PMID=11101804)
# Genbank_ID_(DNA):
G1787642
# Genbank_ID_(Protein):
AAC74460.1
# SWISS_PROT_(AC_&_ID):
$ NIFJ_ECOLI (P52647)
# 2D_Gel_Image:
Not Available
# Other_Databases:
- ECOCYC: EG13183
- EcoGene: EG13183
- EMBL: U00096
- InterPro: IPR001450; IPR002869; IPR002880; IPR011895; IPR011766; IPR009014
- Pfam: PF00037; PF01558; PF01855; PF02775
- PIR: E64888
- PRINTS: PR00353
- PROSITE: PS00198
# Pfam_Domain/Function:
PF00037 4Fe-4S binding domain; PF01558 Pyruvate ferredoxin/flavodoxin oxidoreductase; PF01855 Pyruvate flavodoxin/ferredoxin oxidoreductase, thiamine diP-binding domain; PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain;
# Homologues:
Organism=Saccharomyces cerevisiae, GI14318438, Length=1442, Positives=44%, Blast Score=113
# Similarity:
Contains 2 4Fe-4S type ferredoxin domains.
# EC_Number:
1.2.7.-
# No._of_Amino_Acids:
1174 (Translated Protein)
1174 (Mature Protein)
# Molecular_Weight:
128826 128826
# Theoretical_pI:
5.57
# Theoretical_pI (Mature):
5.57
# Sequence:
// MITIDGNGAVASVAFRTSEVIAIYPITPSSTMAEQADAWAGNGLKNVWGDTPRVVEMQSE
// AGAIATVHGALQTGALSTSFTSSQGLLLMIPTLYKLAGELTPFVLHVAARTVATHALSIF
// GDHSDVMAVRQTGCAMLCAANVQEAQDFALISQIATLKSRVPFIHFFDGFRTSHEINKIV
// PLADDTILDLMPQVEIDAHRARALNPEHPVIRGTSANPDTYFQSREATNPWYNAVYDHVE
// QAMNDFSAATGRQYQPFEYYGHPQAERVIILMGSAIGTCEEVVDELLTRGEKVGVLKVRL
// YRPFSAKHLLQALPGSVRSVAVLDRTKEPGAQAEPLYLDVMTALAEAFNNGERETLPRVI
// GGRYGLSSKEFGPDCVLAVFAELNAAKPKARFTVGIYDDVTNLSLPLPENTLPNSAKLEA
// LFYGLGSDGSVSATKNNIKIIGNSTPWYAQGYFVYDSKKAGGLTVSHLRVSEQPIRSAYL
// ISQADFVGCHQLQFIDKYQMAERLKPGGIFLLNTPYSADEVWSRLPQEVQAVLNQKKARF
// YVINAAKIARECGLAARINTVMQMAFFHLTQILPGDSALAELQGAIAKSYSSKGQDLVER
// NWQALALARESVEEVPLQPVNPHSANRPPVVSDAAPDFVKTVTAAMLAGLGDALPVSALP
// PDGTWPMGTTRWEKRNIAEEIPIWKEELCTQCNHCVAACPHSAIRAKVVPPEAMENAPAS
// LHSLDVKSRDMRGQKYVLQVAPEDCTGCNLCVEVCPAKDRQNPEIKAINMMSRLEHVEEE
// KINYDFFLNLPEIDRSKLERIDIRTSQLITPLFEYSGACSGCGETPYIKLLTQLYGDRML
// IANATGCSSIYGGNLPSTPYTTDANGRGPAWANSLFEDNAEFGLGFRLTVDQHRVRVLRL
// LDQFADKIPAELLTALKSDATPEVRREQVAALRQQLNDVAEAHELLRDADALVEKSIWLI
// GGDGWAYDIGFGGLDHVLSLTENVNILVLDTQCYSNTGGQASKATPLGAVTKFGEHGKRK
// ARKDLGVSMMMYGHVYVAQISLGAQLNQTVKAIQEAEAYPGPSLIIAYSPCEEHGYDLAL
// SHDQMRQLTATGFWPLYRFDPRRADEGKLPLALDSRPPSEAPEETLLHEQRFRRLNSQQP
// EVAEQLWKDAAADLQKRYDFLAQMAGKAEKSNTD
// /\
// MITIDGNGAVASVAFRTSEVIAIYPITPSSTMAEQADAWAGNGLKNVWGDTPRVVEMQSE
// AGAIATVHGALQTGALSTSFTSSQGLLLMIPTLYKLAGELTPFVLHVAARTVATHALSIF
// GDHSDVMAVRQTGCAMLCAANVQEAQDFALISQIATLKSRVPFIHFFDGFRTSHEINKIV
// PLADDTILDLMPQVEIDAHRARALNPEHPVIRGTSANPDTYFQSREATNPWYNAVYDHVE
// QAMNDFSAATGRQYQPFEYYGHPQAERVIILMGSAIGTCEEVVDELLTRGEKVGVLKVRL
// YRPFSAKHLLQALPGSVRSVAVLDRTKEPGAQAEPLYLDVMTALAEAFNNGERETLPRVI
// GGRYGLSSKEFGPDCVLAVFAELNAAKPKARFTVGIYDDVTNLSLPLPENTLPNSAKLEA
// LFYGLGSDGSVSATKNNIKIIGNSTPWYAQGYFVYDSKKAGGLTVSHLRVSEQPIRSAYL
// ISQADFVGCHQLQFIDKYQMAERLKPGGIFLLNTPYSADEVWSRLPQEVQAVLNQKKARF
// YVINAAKIARECGLAARINTVMQMAFFHLTQILPGDSALAELQGAIAKSYSSKGQDLVER
// NWQALALARESVEEVPLQPVNPHSANRPPVVSDAAPDFVKTVTAAMLAGLGDALPVSALP
// PDGTWPMGTTRWEKRNIAEEIPIWKEELCTQCNHCVAACPHSAIRAKVVPPEAMENAPAS
// LHSLDVKSRDMRGQKYVLQVAPEDCTGCNLCVEVCPAKDRQNPEIKAINMMSRLEHVEEE
// KINYDFFLNLPEIDRSKLERIDIRTSQLITPLFEYSGACSGCGETPYIKLLTQLYGDRML
// IANATGCSSIYGGNLPSTPYTTDANGRGPAWANSLFEDNAEFGLGFRLTVDQHRVRVLRL
// LDQFADKIPAELLTALKSDATPEVRREQVAALRQQLNDVAEAHELLRDADALVEKSIWLI
// GGDGWAYDIGFGGLDHVLSLTENVNILVLDTQCYSNTGGQASKATPLGAVTKFGEHGKRK
// ARKDLGVSMMMYGHVYVAQISLGAQLNQTVKAIQEAEAYPGPSLIIAYSPCEEHGYDLAL
// SHDQMRQLTATGFWPLYRFDPRRADEGKLPLALDSRPPSEAPEETLLHEQRFRRLNSQQP
// EVAEQLWKDAAADLQKRYDFLAQMAGKAEKSNTD
# PROSITE_Motif:
4FE4S_FERREDOXIN; PATTERN. PS00198; 4Fe-4S ferredoxins, iron-sulfur binding region signature. C-x(2)-C-x(2)-C-x(3)-C-[PEG]. PDOC00176; //
# Important_Sites:
Not Available
# Transmembrane:
Not Available
# Cys/Met_Content:
1.6 %Cys (Translated Protein)
2.1 %Met (Translated Protein)
3.7 %Cys+Met (Translated Protein)
1.6 %Cys (Mature Protein)
2.1 %Met (Mature Protein)
3.7 %Cys+Met (Mature Protein)
# Secondary_Structure:
>NIFJ_ECOLI (Translated Protein)
MITIDGNGAVASVAFRTSEVIAIYPITPSSTMAEQADAWAGNGLKNVWGDTPRVVEMQSE
CEEECHHHHHHHHHHHCCCEEEECCCCCCCHHHHHHHHHHHCCCCCCCCCCCEEEEECHH
AGAIATVHGALQTGALSTSFTSSQGLLLMIPTLYKLAGELTPFVLHVAARTVATHALSIF
HHHHHHHHHHHHHCCHHEEEEEHHCCCCCCCHHHHHHHCCCCEEEEEEECCCCCCCCCCC
GDHSDVMAVRQTGCAMLCAANVQEAQDFALISQIATLKSRVPFIHFFDGFRTSHEINKIV
CCHHHHHHHHHCCCEEEEECCHHHHHHHHHHHHHHHHHCCCCEEEECCHHHHCCCCCCCC
PLADDTILDLMPQVEIDAHRARALNPEHPVIRGTSANPDTYFQSREATNPWYNAVYDHVE
CCCHHHHHHCCCHHHHHHHCCCCCCCCCCEECCCCCCCCCCEEEHHHHHHHHHHHHHHHH
QAMNDFSAATGRQYQPFEYYGHPQAERVIILMGSAIGTCEEVVDELLTRGEKVGVLKVRL
HHHHHHHHHHCCCCCCCCEECCCCCCEEEEECCCCHHHHHHHHHHHHCCCCCEEEEEEEE
YRPFSAKHLLQALPGSVRSVAVLDRTKEPGAQAEPLYLDVMTALAEAFNNGERETLPRVI
ECCCCHHHHHHHCCCCCEEEEEEECCCCCCCCCCHHHHHHHHHHHHHHHCCCCCCCCEEE
GGRYGLSSKEFGPDCVLAVFAELNAAKPKARFTVGIYDDVTNLSLPLPENTLPNSAKLEA
EEEEEECCCCCCHHHHHHHHHHHHHCCCCCCEEEEEECCCCCCCCCCCCCCCCCCCCCEE
LFYGLGSDGSVSATKNNIKIIGNSTPWYAQGYFVYDSKKAGGLTVSHLRVSEQPIRSAYL
EEEEECCCHHHHHHHHHHHHHHHCCCCEEEEEECCCCCCCCCEEEEEEEECCCCCCCCCC
ISQADFVGCHQLQFIDKYQMAERLKPGGIFLLNTPYSADEVWSRLPQEVQAVLNQKKARF
CCCCCEEEEECCCCEEEEEECCCCCCCCEEEEECCCCHHHHHHHCCHHHHHHHHHCCCEE
YVINAAKIARECGLAARINTVMQMAFFHLTQILPGDSALAELQGAIAKSYSSKGQDLVER
EEEEHHHHHHHHCCCCCCCHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHCCCHHHHHHH
NWQALALARESVEEVPLQPVNPHSANRPPVVSDAAPDFVKTVTAAMLAGLGDALPVSALP
HHHHHHHHCCCCEEEEECCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHCCCCCCCCEEEC
PDGTWPMGTTRWEKRNIAEEIPIWKEELCTQCNHCVAACPHSAIRAKVVPPEAMENAPAS
CCCCCCCCCCCCCCCCCCCCCCEECHHHCCCCCCCEEECCCCCCCCCCCCHHHHHHCCCC
LHSLDVKSRDMRGQKYVLQVAPEDCTGCNLCVEVCPAKDRQNPEIKAINMMSRLEHVEEE
CEECCCCCCCCCCCCCEEEECHHHCCCCCCCCCCCCCCCCCCHHHHHCCCCCHHHHHHHH
KINYDFFLNLPEIDRSKLERIDIRTSQLITPLFEYSGACSGCGETPYIKLLTQLYGDRML
HHHHHHHHCCCCCCCCCCCCCCCCHHHHCCCHHHCCCCCCCCCCHHHHHHHHHHCCCCEE
IANATGCSSIYGGNLPSTPYTTDANGRGPAWANSLFEDNAEFGLGFRLTVDQHRVRVLRL
EEECCCCCCCCCCCCCCCCCCCCCCCCCCCEECCCCCCCHHHHHHHHHHHHHHHHHHHHH
LDQFADKIPAELLTALKSDATPEVRREQVAALRQQLNDVAEAHELLRDADALVEKSIWLI
HHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHCCCHHHHHHHHHCCCCCCCCCEEEE
GGDGWAYDIGFGGLDHVLSLTENVNILVLDTQCYSNTGGQASKATPLGAVTKFGEHGKRK
ECCHHHHHHHHHHHHHHHHCCCCCEEEEECCCCCCCCCCCCCCCCCCCCEEECCCCCCCC
ARKDLGVSMMMYGHVYVAQISLGAQLNQTVKAIQEAEAYPGPSLIIAYSPCEEHGYDLAL
CCCCHHHHHHHCCCCEEEEEECCCCHHHHHHHHHHHHHCCCCEEEEEEECCCCCCCCHHC
SHDQMRQLTATGFWPLYRFDPRRADEGKLPLALDSRPPSEAPEETLLHEQRFRRLNSQQP
CHHHHHHHHHCCCEEEEEECCCCCCCCCCCEECCCCCCCCCHHHHHHHCCHHHHHCCCCH
EVAEQLWKDAAADLQKRYDFLAQMAGKAEKSNTD
HHHHHHHHHHHHHHHHHHHHHHHHHCHHCCCCCC
/\
>NIFJ_ECOLI (Mature Protein)
ITIDGNGAVASVAFRTSEVIAIYPITPSSTMAEQADAWAGNGLKNVWGDTPRVVEMQSEA
EEECHHHHHHHHHHHCCCEEEECCCCCCCHHHHHHHHHHHCCCCCCCCCCCEEEEECHHH
GAIATVHGALQTGALSTSFTSSQGLLLMIPTLYKLAGELTPFVLHVAARTVATHALSIFG
HHHHHHHHHHHHCCHHEEEEEHHCCCCCCCHHHHHHHCCCCEEEEEEECCCCCCCCCCCC
DHSDVMAVRQTGCAMLCAANVQEAQDFALISQIATLKSRVPFIHFFDGFRTSHEINKIVP
CHHHHHHHHHCCCEEEEECCHHHHHHHHHHHHHHHHHCCCCEEEECCHHHHCCCCCCCCC
LADDTILDLMPQVEIDAHRARALNPEHPVIRGTSANPDTYFQSREATNPWYNAVYDHVEQ
CCHHHHHHCCCHHHHHHHCCCCCCCCCCEECCCCCCCCCCEEEHHHHHHHHHHHHHHHHH
AMNDFSAATGRQYQPFEYYGHPQAERVIILMGSAIGTCEEVVDELLTRGEKVGVLKVRLY
HHHHHHHHHCCCCCCCCEECCCCCCEEEEECCCCHHHHHHHHHHHHCCCCCEEEEEEEEE
RPFSAKHLLQALPGSVRSVAVLDRTKEPGAQAEPLYLDVMTALAEAFNNGERETLPRVIG
CCCCHHHHHHHCCCCCEEEEEEECCCCCCCCCCHHHHHHHHHHHHHHHCCCCCCCCEEEE
GRYGLSSKEFGPDCVLAVFAELNAAKPKARFTVGIYDDVTNLSLPLPENTLPNSAKLEAL
EEEEECCCCCCHHHHHHHHHHHHHCCCCCCEEEEEECCCCCCCCCCCCCCCCCCCCCEEE
FYGLGSDGSVSATKNNIKIIGNSTPWYAQGYFVYDSKKAGGLTVSHLRVSEQPIRSAYLI
EEEECCCHHHHHHHHHHHHHHHCCCCEEEEEECCCCCCCCCEEEEEEEECCCCCCCCCCC
SQADFVGCHQLQFIDKYQMAERLKPGGIFLLNTPYSADEVWSRLPQEVQAVLNQKKARFY
CCCCEEEEECCCCEEEEEECCCCCCCCEEEEECCCCHHHHHHHCCHHHHHHHHHCCCEEE
VINAAKIARECGLAARINTVMQMAFFHLTQILPGDSALAELQGAIAKSYSSKGQDLVERN
EEEHHHHHHHHCCCCCCCHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHCCCHHHHHHHH
WQALALARESVEEVPLQPVNPHSANRPPVVSDAAPDFVKTVTAAMLAGLGDALPVSALPP
HHHHHHHCCCCEEEEECCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHCCCCCCCCEEECC
DGTWPMGTTRWEKRNIAEEIPIWKEELCTQCNHCVAACPHSAIRAKVVPPEAMENAPASL
CCCCCCCCCCCCCCCCCCCCCEECHHHCCCCCCCEEECCCCCCCCCCCCHHHHHHCCCCC
HSLDVKSRDMRGQKYVLQVAPEDCTGCNLCVEVCPAKDRQNPEIKAINMMSRLEHVEEEK
EECCCCCCCCCCCCCEEEECHHHCCCCCCCCCCCCCCCCCCHHHHHCCCCCHHHHHHHHH
INYDFFLNLPEIDRSKLERIDIRTSQLITPLFEYSGACSGCGETPYIKLLTQLYGDRMLI
HHHHHHHCCCCCCCCCCCCCCCCHHHHCCCHHHCCCCCCCCCCHHHHHHHHHHCCCCEEE
ANATGCSSIYGGNLPSTPYTTDANGRGPAWANSLFEDNAEFGLGFRLTVDQHRVRVLRLL
EECCCCCCCCCCCCCCCCCCCCCCCCCCCEECCCCCCCHHHHHHHHHHHHHHHHHHHHHH
DQFADKIPAELLTALKSDATPEVRREQVAALRQQLNDVAEAHELLRDADALVEKSIWLIG
HHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHCCCHHHHHHHHHCCCCCCCCCEEEEE
GDGWAYDIGFGGLDHVLSLTENVNILVLDTQCYSNTGGQASKATPLGAVTKFGEHGKRKA
CCHHHHHHHHHHHHHHHHCCCCCEEEEECCCCCCCCCCCCCCCCCCCCEEECCCCCCCCC
RKDLGVSMMMYGHVYVAQISLGAQLNQTVKAIQEAEAYPGPSLIIAYSPCEEHGYDLALS
CCCHHHHHHHCCCCEEEEEECCCCHHHHHHHHHHHHHCCCCEEEEEEECCCCCCCCHHCC
HDQMRQLTATGFWPLYRFDPRRADEGKLPLALDSRPPSEAPEETLLHEQRFRRLNSQQPE
HHHHHHHHHCCCEEEEEECCCCCCCCCCCEECCCCCCCCCHHHHHHHCCHHHHHCCCCHH
VAEQLWKDAAADLQKRYDFLAQMAGKAEKSNTD
HHHHHHHHHHHHHHHHHHHHHHHHCHHCCCCCC
# PDB_Accession:
& Model Based on 2PDA (1-1022)
# Resolution:
Not Available
# Structure_CLASS:
Alpha Beta
# Quaternary_Structure:
Not Available
# Interacting_Partners:
Unknown
# Cofactors:
Not Available
# Metals_Ions:
--Iron (Potential)
# Kcat_Value_[1/min]:
Not Available
# Specific_Activity_[micromol/min/mg]:
Not Available
# Km_Value_[mM]:
Not Available
# Substrates:
Not Available
# Products:
Not Available
# Specific_Reaction:
Not Available
# General_Reaction:
Not Available
# Inhibitor:
Not Available
# Priority:
1.0
# Status:
Selected, Cloned, Expressed, Soluble
# Availability:
Laboratory of Structural & Genomic Information
#END_ECARDFILE
#BEGIN_ECARDFILE
# Entry_ID:
CC2244A.1
# Accession_No.:
UA0002244
# Name:
Protein yhjJ precursor
# Alternate_Names:
Not Available
# General_Function:
Member of M16B family; non-peptidase homologues (YhjJ protein); LuxS/MPP-like metallohydrolase
# COG_Function:
General function prediction only (code R)
# COG_ID:
COG0673 Predicted dehydrogenases and related proteins (Evalue = 0.0)
# Specific_Function:
Gene yhjJ is regulated by transcriptional attenuation.
# Riley_Gene_Function:
putative peptidase; predicted zinc-dependent peptidase
# Riley_Cell_Function:
>>>
Metabolism
Macromolecule degradation
Proteins/peptides/glycopeptides
# Gene_Ontology:
>>>
Function: catalytic activity
Function: hydrolase activity
Function: peptidase activity
Function: endopeptidase activity
Function: metalloendopeptidase activity
||
>>>
Function: metallopeptidase activity
Function: metalloendopeptidase activity
||
>>>
Process: physiological process
Process: metabolism
Process: macromolecule metabolism
Process: protein metabolism
Process: cellular protein metabolism
Process: proteolysis
||
>>>
Process: cellular macromolecule metabolism
Process: cellular protein metabolism
Process: proteolysis
||
>>>
Process: cellular metabolism
Process: cellular macromolecule metabolism
Process: cellular protein metabolism
Process: proteolysis
||
>>>
Process: primary metabolism
Process: protein metabolism
Process: cellular protein metabolism
Process: proteolysis
||
>>>
Process: cellular physiological process
Process: cellular metabolism
Process: cellular macromolecule metabolism
Process: cellular protein metabolism
Process: proteolysis
||
>>>
Process: cellular process
Process: cellular physiological process
Process: cellular metabolism
Process: cellular macromolecule metabolism
Process: cellular protein metabolism
Process: proteolysis
||
>>>
Component: Not Available
# Location:
Periplasmic Protein
# Blattner_Number:
b3527
# Gene_Sequence:
ATGCAGGGCACAAAAATTCGACTTTTAGCGGGCGGTTTGCTGATGATGGCCACTGCTGGCTATGTGCAGG
CAGATGCGCTCCAGCCTGATCCAGCATGGCAACAGGGGACGCTTTCCAACGGTTTACAGTGGCAAGTGCT
GACCACCCCCCAGCGTCCCAGCGATCGTGTTGAAATTCGCCTGCTGGTTAATACCGGTTCGCTCGCCGAA
AGTACACAACAGAGCGGTTACAGTCACGCCATCCCTCGTATTGCGCTAACGCAAAGCGGTGGCCTTGACG
CAGCACAGGCGCGTTCATTGTGGCAGCAGGGGATCGACCCTAAACGCCCGATGCCGCCGGTAATTGTCTC
TTATGACACCACGCTGTTTAATCTGAGTTTGCCCAATAACCGTAACGATTTGCTGAAAGAAGCGCTCTCT
TATCTGGCAAATGCCACTGGCAAATTGACCATCACACCAGAAACCATCAACCACGCGCTGCAAAGTCAGG
ACATGGTGGCAACCTGGCCTGCCGATACTAAAGAGGGCTGGTGGCGCTATCGTCTGAAAGGGTCAACCTT
GTTAGGTCACGATCCTGCCGATCCGCTGAAACAACCCGTTGAAGCGGAAAAAATTAAAGATTTCTATCAG
AAATGGTACACCCCGGATGCAATGACGCTACTGGTGGTGGGAAACGTGGATGCGCGCTCGGTTGTCGACC
AAATAAACAAAACGTTTGGCGAACTGAAAGGCAAACGTGAAACGCCAGCTCCGGTGCCGACGCTTTCTCC
GCTGCGTGCGGAAGCGGTGAGTATTATGACTGACGCGGTGCGTCAGGACCGGTTATCTATCATGTGGGAT
ACGCCGTGGCAGCCGATTCGTGAATCAGCCGCACTGCTGCGCTACTGGCGTGCGGACCTGGCCCGCGAGG
CGCTGTTCTGGCATGTTCAGCAAGCGTTAAGTGCCAGTAACAGCAAAGACATCGGTCTTGGATTTGACTG
CCGTGTGCTGTATCTGCGTGCGCAGTGTGCCATCAACATCGAATCACCAAACGACAAGCTGAACAGCAAC
CTTAATCTGGTGGCGCGTGAACTGGCGAAGGTTCGCGATAAAGGTCTGCCGGAAGAAGAGTTCAATGCGT
TAGTGGCGCAAAAGAAACTGGAGCTGCAGAAACTGTTTGCCGCCTATGCACGAGCTGATACCGATATTCT
GATGGGTCAGCGGATGCGTTCGTTGCAAAATCAGGTTGTCGATATCGCGCCGGAGCAATATCAGAAACTG
CGGCAGGATTTCCTTAATAGCCTGACGGTAGAGATGTTAAATCAGGATCTGCGTCAACAGTTGTCGAATG
ATATGGCGTTAATACTGCTGCAGCCGAAAGGCGAGCCGGAATTTAACATGAAAGCGTTGCAGGCGGTCTG
GGATCAAATCATGGCCCCATCTACCGCCGCTGCGACCACCTCTGTCGCCACGGATGACGTACATCCTGAA
GTGACGGATATTCCACCTGCACAGTAA
# Upstream_100_bases:
TCATGTTCTTGCGGTCTAACACGAAGTGTTTTTAACGTCATTTAGACTGACCGACAACGGGCAGTTTTTT
TATTACCAGGATAGTTGATCAGGGGTTCAC
# Blattner_No_Ontology:
Hypothetical, unclassified, unknown
# Gene_Position:
3678467-3679963 (Counter Clockwise)
# Centisome_Position:
79.315
# Gene_Name:
yhjJ
# GC_Content:
53.44%
# Metabolic_Importance:
Non_Essential
# Preceding_Gene:
kdgK
# Following_Gene:
dctA
# Operon_Status:
No
# Operon_Components:
None
# Paralogues:
None
# Copy Number:
40 Molecules/Cell In: Stationary Phase, Rich Media (Periplasmic-Enriched E. Coli Proteins).
# RNA_Copy_No.:
Log phase (2max): 0.32
Stationary phase (2max): 0.08
Ref: Nature Biotech., 18, 1262-68, Dec. 2000 (PMID=11101804)
# Genbank_ID_(DNA):
G1789946
# Genbank_ID_(Protein):
AAC76552.1
# SWISS_PROT_(AC_&_ID):
$ YHJJ_ECOLI (P37648)
# 2D_Gel_Image:
Not Available
# Other_Databases:
- ECOCYC: EG12254
- EcoGene: EG12254
- EMBL: U00039
- InterPro: IPR011765; IPR001431; IPR007863
- Pfam: PF00675; PF05193
- PIR: S47748
- PROSITE: PS00143
# Pfam_Domain/Function:
PF00675 Insulinase (Peptidase family M16); PF05193 Peptidase M16 inactive domain;
# Homologues:
Not Available
# Similarity:
Belongs to the peptidase M16 family.
# EC_Number:
Not Available
# No._of_Amino_Acids:
498 (Translated Protein)
474 (Mature Protein)
# Molecular_Weight:
55528 53051
# Theoretical_pI:
5.81
# Theoretical_pI (Mature):
5.36
# Sequence:
// MQGTKIRLLAGGLLMMATAGYVQADALQPDPAWQQGTLSNGLQWQVLTTPQRPSDRVEIR
// LLVNTGSLAESTQQSGYSHAIPRIALTQSGGLDAAQARSLWQQGIDPKRPMPPVIVSYDT
// TLFNLSLPNNRNDLLKEALSYLANATGKLTITPETINHALQSQDMVATWPADTKEGWWRY
// RLKGSTLLGHDPADPLKQPVEAEKIKDFYQKWYTPDAMTLLVVGNVDARSVVDQINKTFG
// ELKGKRETPAPVPTLSPLRAEAVSIMTDAVRQDRLSIMWDTPWQPIRESAALLRYWRADL
// AREALFWHVQQALSASNSKDIGLGFDCRVLYLRAQCAINIESPNDKLNSNLNLVARELAK
// VRDKGLPEEEFNALVAQKKLELQKLFAAYARADTDILMGQRMRSLQNQVVDIAPEQYQKL
// RQDFLNSLTVEMLNQDLRQQLSNDMALILLQPKGEPEFNMKALQAVWDQIMAPSTAAATT
// SVATDDVHPEVTDIPPAQ
// /\
// DALQPDPAWQQGTLSNGLQWQVLTTPQRPSDRVEIRLLVNTGSLAESTQQSGYSHAIPRI
// ALTQSGGLDAAQARSLWQQGIDPKRPMPPVIVSYDTTLFNLSLPNNRNDLLKEALSYLAN
// ATGKLTITPETINHALQSQDMVATWPADTKEGWWRYRLKGSTLLGHDPADPLKQPVEAEK
// IKDFYQKWYTPDAMTLLVVGNVDARSVVDQINKTFGELKGKRETPAPVPTLSPLRAEAVS
// IMTDAVRQDRLSIMWDTPWQPIRESAALLRYWRADLAREALFWHVQQALSASNSKDIGLG
// FDCRVLYLRAQCAINIESPNDKLNSNLNLVARELAKVRDKGLPEEEFNALVAQKKLELQK
// LFAAYARADTDILMGQRMRSLQNQVVDIAPEQYQKLRQDFLNSLTVEMLNQDLRQQLSND
// MALILLQPKGEPEFNMKALQAVWDQIMAPSTAAATTSVATDDVHPEVTDIPPAQ
# PROSITE_Motif:
INSULINASE; PATTERN. PS00143; Insulinase family, zinc-binding region signature. G-x(8,9)-G-x-[STA]-H-[LIVMFY]-[LIVMC]-[DERN]-[HRKL]-[LMFAT]-x-[LFSTH]-x- PA [GSTAN]-[GST]. PDOC00130; //
# Important_Sites:
Signal Chain 1 24
# Transmembrane:
Not Available
# Cys/Met_Content:
0.4 %Cys (Translated Protein)
2.8 %Met (Translated Protein)
3.2 %Cys+Met (Translated Protein)
0.4 %Cys (Mature Protein)
2.3 %Met (Mature Protein)
2.7 %Cys+Met (Mature Protein)
# Secondary_Structure:
>YHJJ_ECOLI (Translated Protein)
MQGTKIRLLAGGLLMMATAGYVQADALQPDPAWQQGTLSNGLQWQVLTTPQRPSDRVEIR
CCCCEEHHHHHHHHHHHHCCCCHHCCCCCCCCCEEEECCCCCEEEEEECCCCCCCEEEEE
LLVNTGSLAESTQQSGYSHAIPRIALTQSGGLDAAQARSLWQQGIDPKRPMPPVIVSYDT
EEEEECCCCCCCCCCCCHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHCCCCCCCCCCCCC
TLFNLSLPNNRNDLLKEALSYLANATGKLTITPETINHALQSQDMVATWPADTKEGWWRY
EEEEEEHHHCCHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCHHH
RLKGSTLLGHDPADPLKQPVEAEKIKDFYQKWYTPDAMTLLVVGNVDARSVVDQINKTFG
HHHHHCCCCCCCCCCCCCCCCHHHHHHHHHHHCCCCCEEEEEECCCCHHHHHHHHHHHHC
ELKGKRETPAPVPTLSPLRAEAVSIMTDAVRQDRLSIMWDTPWQPIRESAALLRYWRADL
CCCCCCCCCCCCCCCCCCCCCEEEEECCCCCCCEEEEEECCCCCCCCHHHHHHHHHHHHH
AREALFWHVQQALSASNSKDIGLGFDCRVLYLRAQCAINIESPNDKLNSNLNLVARELAK
CCCHHHHHHHHHHCCCCCEEEECCCCCCCCCCCEEEEEEECCCCCCHHHHHHHHHHHHHH
VRDKGLPEEEFNALVAQKKLELQKLFAAYARADTDILMGQRMRSLQNQVVDIAPEQYQKL
HHHCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHCCCCCCCCHHHHHH
RQDFLNSLTVEMLNQDLRQQLSNDMALILLQPKGEPEFNMKALQAVWDQIMAPSTAAATT
HHHHHHHCCHHHHHHHHHHHCCCCCEEEEEECCCCCHHHHHHHHHHHCCCCCCCCCCCCE
SVATDDVHPEVTDIPPAQ
EEEEECCCCCCCCCCCCC
/\
>YHJJ_ECOLI (Mature Protein)
DALQPDPAWQQGTLSNGLQWQVLTTPQRPSDRVEIRLLVNTGSLAESTQQSGYSHAIPRI
CCCCCCCCCEEEECCCCCEEEEEECCCCCCCEEEEEEEEEECCCCCCCCCCCCHHHHHHH
ALTQSGGLDAAQARSLWQQGIDPKRPMPPVIVSYDTTLFNLSLPNNRNDLLKEALSYLAN
HHCCCCCCCHHHHHHHHHHHHHHCCCCCCCCCCCCCEEEEEEHHHCCHHHHHHHHHHHHH
ATGKLTITPETINHALQSQDMVATWPADTKEGWWRYRLKGSTLLGHDPADPLKQPVEAEK
HHHCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHCCCCCCCCCCCCCCCCHHH
IKDFYQKWYTPDAMTLLVVGNVDARSVVDQINKTFGELKGKRETPAPVPTLSPLRAEAVS
HHHHHHHHCCCCCEEEEEECCCCHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCEEE
IMTDAVRQDRLSIMWDTPWQPIRESAALLRYWRADLAREALFWHVQQALSASNSKDIGLG
EECCCCCCCEEEEEECCCCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHCCCCCEEEECC
FDCRVLYLRAQCAINIESPNDKLNSNLNLVARELAKVRDKGLPEEEFNALVAQKKLELQK
CCCCCCCCCEEEEEEECCCCCCHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHH
LFAAYARADTDILMGQRMRSLQNQVVDIAPEQYQKLRQDFLNSLTVEMLNQDLRQQLSND
HHHHHHCCCCHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHCCHHHHHHHHHHHCCCC
MALILLQPKGEPEFNMKALQAVWDQIMAPSTAAATTSVATDDVHPEVTDIPPAQ
CEEEEEECCCCCHHHHHHHHHHHCCCCCCCCCCCCEEEEEECCCCCCCCCCCCC
# PDB_Accession:
& Not Available
# Resolution:
Not Available
# Structure_CLASS:
Alpha Beta
# Quaternary_Structure:
Not Available
# Interacting_Partners:
Not Available
# Cofactors:
Not Available
# Metals_Ions:
Not Available
# Kcat_Value_[1/min]:
Not Available
# Specific_Activity_[micromol/min/mg]:
Not Available
# Km_Value_[mM]:
Not Available
# Substrates:
Not Available
# Products:
Not Available
# Specific_Reaction:
Not Available
# General_Reaction:
Not Available
# Inhibitor:
Not Available
# Priority:
8.7
# Status:
Selected, Work Stopped
# Availability:
JCSG
#END_ECARDFILE
#BEGIN_ECARDFILE
# Entry_ID:
CC4060A.1
# Accession_No.:
UA0004060
# Name:
Hypothetical protein yfaT precursor
# Alternate_Names:
Not Available
# General_Function:
Unknown
# COG_Function:
Function unknown (code S)
# COG_ID:
COG3234 Uncharacterized protein conserved in bacteria (Evalue = 1e-123)
# Specific_Function:
Not Available
# Riley_Gene_Function:
conserved hypothetical protein
# Riley_Cell_Function:
>>>
Not Available
# Gene_Ontology:
>>>
Function: Not Available
||
>>>
Process: Not Available
||
>>>
Component: Not Available
# Location:
Not Available
# Blattner_Number:
b2229
# Gene_Sequence:
ATGAGGCACGGGCTGCTGGCGCTGATTTGCTGGCTGTGTTGTGTTGTTGCCCATAGCGAAATGCTGAATG
TCGAACAATCCGGGCTGTTTCGCGCCTGGTTTGTACGCATTGCACAAGAACAGCTCCGCCAGGGGCCAAG
TCCACGCTGGTATCAGCAGGATTGTGCGGGCCTGGTGCGATTTGCGGCGAACGAGACGCTGAAAGTTCAC
GACAGTAAATGGCTAAAAAGTAACGGTTTATCTAGCCAGTATTTGCCGCCAGAGATGACGCTAACACCTG
AACAGCGTCAACTGGCGCAAAACTGGAATCAGGGGAACGGGAAAACCGGCCCCTATGTGACCGCGATTAA
TTTGATTCAGTACAACAGCCAGTTTATTGGCCAGGACATAAACCAGGCGCTGCCTGGCGATATGATTTTT
TTCGATCAGGGCGATGCCCAGCACTTAATGGTCTGGATGGGGCGTTACGTCATCTACCACACCGGAAGCG
CCACGAAAACTGACAACGGAATGCGCGCAGTCAGTCTGCAACAACTTATGACATGGAAGGACACCCGATG
GATACCCAACGATTCCAATCCCAATTTCATTGGCATTTATCGTTTAAATTTTCTGGCGCGATAG
# Upstream_100_bases:
AGCTGGACGCTTTATCTCAACAACCGCGTTATGTCATGAAGCTGGCCCAGATGGAACCCGGTGCCGCCTG
GCAGTGGCTACCCATAACCTGGCAGCCGCT
# Blattner_No_Ontology:
Hypothetical, unclassified, unknown
# Gene_Position:
2332358-2332981 (Counter Clockwise)
# Centisome_Position:
50.283
# Gene_Name:
yfaT
# GC_Content:
51.44%
# Metabolic_Importance:
Unknown
# Preceding_Gene:
yfaS
# Following_Gene:
yfaA
# Operon_Status:
Yes
# Operon_Components:
yfaT_yfaA Ref: RegulonDB http://kinich.cifn.unam.mx:8850/db/regulondb_cgi.query_simple?v_organism=ECK12&v_table=3&v_name=yfaT
# Paralogues:
None
# Copy Number:
Not Available
# RNA_Copy_No.:
Not Available
# Genbank_ID_(DNA):
AE000312
# Genbank_ID_(Protein):
AAC75289.1
# SWISS_PROT_(AC_&_ID):
$ YFAT_ECOLI (P76466)
# 2D_Gel_Image:
Not Available
# Other_Databases:
- ECOCYC: EG14082
- EcoGene: EG14082
- EMBL: U00096
- InterPro: IPR009558
- Pfam: PF06672
# Pfam_Domain/Function:
PF06672 Protein of unknown function (DUF1175);
# Homologues:
Not Available
# Similarity:
To P.aeruginosa PA4490 and T.maritima TM0986.
# EC_Number:
Not Available
# No._of_Amino_Acids:
207 (Translated Protein)
188 (Mature Protein)
# Molecular_Weight:
23767 21660
# Theoretical_pI:
8.61
# Theoretical_pI (Mature):
8.96
# Sequence:
// MRHGLLALICWLCCVVAHSEMLNVEQSGLFRAWFVRIAQEQLRQGPSPRWYQQDCAGLVR
// FAANETLKVHDSKWLKSNGLSSQYLPPEMTLTPEQRQLAQNWNQGNGKTGPYVTAINLIQ
// YNSQFIGQDINQALPGDMIFFDQGDAQHLMVWMGRYVIYHTGSATKTDNGMRAVSLQQLM
// TWKDTRWIPNDSNPNFIGIYRLNFLAR
// /\
// EMLNVEQSGLFRAWFVRIAQEQLRQGPSPRWYQQDCAGLVRFAANETLKVHDSKWLKSNG
// LSSQYLPPEMTLTPEQRQLAQNWNQGNGKTGPYVTAINLIQYNSQFIGQDINQALPGDMI
// FFDQGDAQHLMVWMGRYVIYHTGSATKTDNGMRAVSLQQLMTWKDTRWIPNDSNPNFIGI
// YRLNFLAR
# PROSITE_Motif:
Hypothetical hesB/yadR/yfhF family signature.
F-x-[LIVMFY]-x-N-[PG]-[NSKQ]-x(4)-C-x-C-[GS]-x-S-F.
# Important_Sites:
Not Available
# Transmembrane:
Not Available
# Cys/Met_Content:
1.9 %Cys (Translated Protein)
3.9 %Met (Translated Protein)
5.8 %Cys+Met (Translated Protein)
0.5 %Cys (Mature Protein)
3.7 %Met (Mature Protein)
4.3 %Cys+Met (Mature Protein)
# Secondary_Structure:
>YFAT_ECOLI (Translated Protein)
MRHGLLALICWLCCVVAHSEMLNVEQSGLFRAWFVRIAQEQLRQGPSPRWYQQDCAGLVR
CCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHH
FAANETLKVHDSKWLKSNGLSSQYLPPEMTLTPEQRQLAQNWNQGNGKTGPYVTAINLIQ
HHHHHHHHHCCCCEEEECCCCCCCCCCCCCCCHHHHHHHHHHHHCCCCCCCEEEEEEEEE
YNSQFIGQDINQALPGDMIFFDQGDAQHLMVWMGRYVIYHTGSATKTDNGMRAVSLQQLM
ECHHHHCCHHHHCCCCCEEEECCCCCCCHHEEECCEEEEEECCCCCCCCCEEEEEHHHHC
TWKDTRWIPNDSNPNFIGIYRLNFLAR
CCCCCCCCCCCCCCCCHHHHHHHHHCC
/\
>YFAT_ECOLI (Mature Protein)
RHGLLALICWLCCVVAHSEMLNVEQSGLFRAWFVRIAQEQLRQGPSPRWYQQDCAGLVRF
CCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHH
AANETLKVHDSKWLKSNGLSSQYLPPEMTLTPEQRQLAQNWNQGNGKTGPYVTAINLIQY
HHHHHHHHCCCCEEEECCCCCCCCCCCCCCCHHHHHHHHHHHHCCCCCCCEEEEEEEEEE
NSQFIGQDINQALPGDMIFFDQGDAQHLMVWMGRYVIYHTGSATKTDNGMRAVSLQQLMT
CHHHHCCHHHHCCCCCEEEECCCCCCCHHEEECCEEEEEECCCCCCCCCEEEEEHHHHCC
WKDTRWIPNDSNPNFIGIYRLNFLAR
CCCCCCCCCCCCCCCHHHHHHHHHCC
# PDB_Accession:
& Not Available
# Resolution:
Not Available
# Structure_CLASS:
Alpha Beta
# Quaternary_Structure:
Not Available
# Interacting_Partners:
Not Available
# Cofactors:
Not Available
# Metals_Ions:
Not Available
# Kcat_Value_[1/min]:
Not Available
# Specific_Activity_[micromol/min/mg]:
Not Available
# Km_Value_[mM]:
Not Available
# Substrates:
Not Available
# Products:
Not Available
# Specific_Reaction:
Not Available
# General_Reaction:
Not Available
# Inhibitor:
Not Available
# Priority:
7.8
# Status:
Not Available
# Availability:
Not Available
#END_ECARDFILE
#BEGIN_ECARDFILE
# Entry_ID:
CC2424A.1
# Accession_No.:
UA0002424
# Name:
Unknown pentitol phosphotransferase enzyme II, A component.
# Alternate_Names:
Not Available
# General_Function:
Transport and binding proteins
# COG_Function:
Carbohydrate transport and metabolism (code G)
# COG_ID:
COG1762 Phosphotransferase system mannitol/fructose-specific IIA domain (Ntr-type) (Evalue = 6e-84)
# Specific_Function:
Not Available
# Riley_Gene_Function:
PTS family enzyme IIA, ascorbate-specific
# Riley_Cell_Function:
>>>
Metabolism
Carbon compound utilization
Carbohydrates/Carbon compounds
L-ascorbate degradation
||
>>>
Transport
Group Translocators
Phosphotransferase Systems (PEP-dependent PTS)
The PTS Fructose-Mannitol (Fru) Family
||
>>>
Transport
substrate
sugar
# Gene_Ontology:
>>>
Function: transporter activity
Function: carrier activity
Function: electrochemical potential-driven transporter activity
Function: porter activity
Function: sugar porter activity
||
>>>
Function: carbohydrate transporter activity
Function: sugar transporter activity
Function: sugar porter activity
||
>>>
Process: physiological process
Process: cellular physiological process
Process: transport
||
>>>
Process: localization
Process: establishment of localization
Process: transport
||
>>>
Process: cellular process
Process: cellular physiological process
Process: transport
||
>>>
Process: physiological process
Process: cellular physiological process
Process: transport
Process: carbohydrate transport
Process: phosphoenolpyruvate-dependent sugar phosphotransferase system
||
>>>
Process: localization
Process: establishment of localization
Process: transport
Process: carbohydrate transport
Process: phosphoenolpyruvate-dependent sugar phosphotransferase system
||
>>>
Process: cellular process
Process: cellular physiological process
Process: transport
Process: carbohydrate transport
Process: phosphoenolpyruvate-dependent sugar phosphotransferase system
||
>>>
Component: Not Available
# Location:
Cytoplasm
# Blattner_Number:
b4195
# Gene_Sequence:
TATCGCCTTTATGGCCGTCATCATTGTAATTGCACTGGCTTATATGTTCTTCGCTGGCCGCGCGCTGCGC
GCAGAAGAAGATGCAGAAAAACAACTGGCAGAACAGTCTGCTTAATAAGGAGTTTTGATTATGACCGTAC
GTATTCTGGCTGTGTGTGGCAACGGACAAGGCAGTTCCATGATCATGAAGATGAAAGTGGACCAGTTTTT
AACCCAATCAAACATTGACCATACGGTAAACAGCTGCGCGGTTGGCGAGTACAAAAGCGAGTTGAGTGGC
GCGGATATCATCATCGCTTCTACGCACATTGCGGGCGAAATCACCGTGACCGGCAACAAATACGTGGTTG
GCGTGCGCAACATGCTCTCTCCTGCCGACTTTGGCCCGAAACTGCTGGAAGTGATCAAAGAGCATTTCCC
GCAGGATGTGAAGTAAGGACGCGCCATGAAATTACGTGATTCGCT
# Upstream_100_bases:
GGTTGGCGTGCGCAACATGCTCTCTCCTGCCGACTTTGGCCCGAAACTGCTGGAAGTGATCAAAGAGCAT
TTCCCGCAGGATGTGAAGTAAGGACGCGCC
# Blattner_No_Ontology:
Putative transport proteins
# Gene_Position:
4419731-4420195 (Clockwise)
# Centisome_Position:
95.259
# Gene_Name:
sgaA or z5804 or ECs5171
# GC_Content:
49.46%
# Metabolic_Importance:
Unknown
# Preceding_Gene:
sgaB
# Following_Gene:
sgaH
# Operon_Status:
No
# Operon_Components:
None
# Paralogues:
b2934 (cmtB) 37; b4302 (sgcA) 39;
# Copy Number:
Unknown
# RNA_Copy_No.:
Log phase (2max): 0.1
Stationary phase (2max): 0.1
Ref: Nature Biotech., 18, 1262-68, Dec. 2000 (PMID=11101804)
# Genbank_ID_(DNA):
G2367359
# Genbank_ID_(Protein):
AAC77152.1
# SWISS_PROT_(AC_&_ID):
$ PTXA_ECOLI (P39303)
# 2D_Gel_Image:
Not Available
# Other_Databases:
- ECOCYC: EG12495
- EcoGene: EG12495
- EMBL: U14003
- InterPro: IPR002178
- Pfam: PF00359
- PIR: C86116
- PROSITE: PS00372
# Pfam_Domain/Function:
PF00359 Phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 2
# Homologues:
Not Available
# Similarity:
Contains 1 PTS EIIA domain.
# EC_Number:
* 2.7.1.69
# No._of_Amino_Acids:
154 (Translated Protein)
154 (Mature Protein)
# Molecular_Weight:
17238 17238
# Theoretical_pI:
4.28
# Theoretical_pI (Mature):
4.28
# Sequence:
// MKLRDSLAENKSIRLQAEAETWQEAVKIGVDLLVAADVVEPRYYQAILDGVEQFGPYFVI
// APGLAMPHGRPEEGVKKTGFSLVTLKKPLEFNHDDNDPVDILITMAAVDANTHQEVGIMQ
// IVNLFEDEENFDRLRACRTEQEVLDLIDRTNAAA
// /\
// MKLRDSLAENKSIRLQAEAETWQEAVKIGVDLLVAADVVEPRYYQAILDGVEQFGPYFVI
// APGLAMPHGRPEEGVKKTGFSLVTLKKPLEFNHDDNDPVDILITMAAVDANTHQEVGIMQ
// IVNLFEDEENFDRLRACRTEQEVLDLIDRTNAAA
# PROSITE_Motif:
PTS_EIIA_2; PATTERN. PS00372; PTS EIIA domains phosphorylation site signature 2. [DENQ]-x(6)-[LIVMF]-[GA]-x(2)-[LIVM]-A-[LIVM]-P-H-[GAC]. PDOC00528; //
# Important_Sites:
Not Available
# Transmembrane:
Not Available
# Cys/Met_Content:
0.6 %Cys (Translated Protein)
2.6 %Met (Translated Protein)
3.2 %Cys+Met (Translated Protein)
0.6 %Cys (Mature Protein)
2.6 %Met (Mature Protein)
3.2 %Cys+Met (Mature Protein)
# Secondary_Structure_(PDB):
LFKLGAENIFLGRKAATKEEAIRFAGEQLVKGGYVEPEYVQAMLDREKLTP
CCCCCCCEEEECCCCCCHHHHHHHHHHHHHHHCEEEHHHHHHHHHHHHHCC
TYLGESIAVPHGTVEAKDRVLKTGVVFCQYPEGVRFGEEEDDIARLVIGIA
CCCCCCEEEECCCCCCCCCCCCEEEEEEEECCCCCCCCCCCCEEEEEEEEE
ARNNEHIQVITSLTNALDDESVIERLAHTTSVDEVLELLAGRK
ECCCHHHHHHHHHHHHCCCHHHHHHHHCCCCHHHHHHHHCCCC
# PDB_Accession:
& Model Based on 1A3A (7-151)
# Resolution:
Not Available
# Structure_CLASS:
Alpha Beta
# Quaternary_Structure:
Not Available
# Interacting_Partners:
Unknown
# Cofactors:
Not Available
# Metals_Ions:
Not Available
# Kcat_Value_[1/min]:
Not Available
# Specific_Activity_[micromol/min/mg]:
Not Available
# Km_Value_[mM]:
Not Available
# Substrates:
Protein N-Phosphohistidine + Sugar
# Products:
Protein Histidine + Sugar Phosphate.
# Specific_Reaction:
Protein N-Phosphohistidine + Sugar = Protein Histidine + Sugar Phosphate.
# General_Reaction:
Not Available
# Inhibitor:
--D-gluco-hexadialdo-1,5-pyranose --diethyldicarbonate --ferricyanide --glucose --mannitol --mannitol --mannitol 1-phosphate --methyl alpha-D-gluco-hexodialdo-1,5-pyranoside --methyl alpha-D-glucopyranoside --more --NEM --PCMB --phenazine methosulfate --plumbagin
# Priority:
1.0
# Status:
Not Available
# Availability:
Not Available
#END_ECARDFILE
#BEGIN_ECARDFILE
# Entry_ID:
CC0311A.1
# Accession_No.:
UA0000311
# Name:
L(+)-tartrate dehydratase alpha subunit
# Alternate_Names:
+; L-TTD alpha
# General_Function:
Energy metabolism
# COG_Function:
Energy production and conversion (code C)
# COG_ID:
COG1951 Tartrate dehydratase alpha subunit/Fumarate hydratase class I, N-terminal domain (Evalue = 1e-171)
# Specific_Function:
Not Available
# Riley_Gene_Function:
L-tartrate dehydratase, alpha subunit
# Riley_Cell_Function:
>>>
Metabolism
Energy metabolism (carbon)
Fermentation
# Gene_Ontology:
>>>
Function: catalytic activity
Function: lyase activity
||
>>>
Process: Not Available
||
>>>
Component: Not Available
# Location:
Cytoplasm
# Blattner_Number:
b3061
# Gene_Sequence:
ATGATGAGCGAAAGTAATAAGCAACAGGCAGTGAATAAGTTGACAGAGATTGTCGCTAACTTTACCGCCA
TGATTTCTACCCGAATGCCTGATGACGTGGTGGATAAACTAAAACAGCTAAAGGATGCCGAAACGTCGTC
GATGGGGAAAATTATCTACCATACGATGTTCGACAACATGCAAAAAGCGATTGACCTGAATCGTCCTGCC
TGTCAGGACACCGGGGAGATTATGTTCTTCGTTAAAGTCGGTTCCCGCTTCCCACTGCTTGGCGAGCTGC
AAAGCATACTCAAACAAGCCGTGGAAGAGGCAACCGTCAAAGCGCCACTACGTCACAATGCGGTAGAAAT
TTTTGACGAAGTAAACACCGGCAAAAATACCGGTAGCGGCGTACCGTGGGTCACCTGGGACATCATCCCC
GACAATGACGATGCGGAAATCGAAGTTTACATGGCAGGCGGCGGCTGCACGCTACCTGGCCGCTCGAAAG
TGTTAATGCCGTCAGAAGGCTACGAAGGCGTGGTGAAATTCGTCTTCGAAAATATCTCCACCCTCGCCGT
AAACGCCTGTCCACCGGTACTGGTGGGCGTGGGCATCGCCACCTCGGTGGAAACCGCCGCCGTACTCTCG
CGTAAAGCCATTTTGCGCCCGATTGGCAGCCGCCATCCCAATCCAAAAGCGGCAGAACTGGAGCTACGCC
TGGAAGAAGGACTCAACCGTCTGGGGATTGGTCCACAAGGGCTGACCGGCAACAGTTCAGTGATGGGCGT
ACATATCGAATCTGCCGCCCGCCATCCGTCAACCATCGGCGTTGCTGTCTCTACCGGCTGCTGGGCGCAT
CGTCGCGGCACGCTGCTGGTTCATGCCGATCTCACCTTTGAAAATCTGTCTCACACCCGGAGCGCGTTAT
GA
# Upstream_100_bases:
TTAATTACATATTCACGGTGGCAAAAAATATAAAACCACATTTTTAGTGGTAGTTTGTGGCGGTGAATTT
TTCCAGACAAATACAAAAACTGGAGTTGCC
# Blattner_No_Ontology:
Energy metabolism
# Gene_Position:
3204485-3205396 (Clockwise)
# Centisome_Position:
69.067
# Gene_Name:
ttdA
# GC_Content:
53.84%
# Metabolic_Importance:
Non_Essential
# Preceding_Gene:
ygiP
# Following_Gene:
ttdB
# Operon_Status:
Yes
# Operon_Components:
ttdA_ttdB Ref: RegulonDB http://kinich.cifn.unam.mx:8850/db/regulondb_cgi.query_simple?v_organism=ECK12&v_table=3&v_name=ttdA
# Paralogues:
None
# Copy Number:
Unknown
# RNA_Copy_No.:
Log phase (2max): 0.24
Stationary phase (2max): 0.16
Ref: Nature Biotech., 18, 1262-68, Dec. 2000 (PMID=11101804)
# Genbank_ID_(DNA):
G1789442
# Genbank_ID_(Protein):
AAC76097.1
# SWISS_PROT_(AC_&_ID):
$ TTDA_ECOLI (P05847)
# 2D_Gel_Image:
Not Available
# Other_Databases:
- ECOCYC: EG11168
- EcoGene: EG11168
- EMBL: L14781
- InterPro: IPR010985; IPR004646
- Pfam: PF05681
- PIR: C65094
# Pfam_Domain/Function:
PF05681 Fumarate hydratase (Fumerase);
# Homologues:
Not Available
# Similarity:
Belongs to the class-I fumarase family.
# EC_Number:
4.2.1.32
# No._of_Amino_Acids:
303 (Translated Protein)
303 (Mature Protein)
# Molecular_Weight:
32734 32734
# Theoretical_pI:
6.31
# Theoretical_pI (Mature):
6.31
# Sequence:
// MMSESNKQQAVNKLTEIVANFTAMISTRMPDDVVDKLKQLKDAETSSMGKIIYHTMFDNM
// QKAIDLNRPACQDTGEIMFFVKVGSRFPLLGELQSILKQAVEEATVKAPLRHNAVEIFDE
// VNTGKNTGSGVPWVTWDIIPDNDDAEIEVYMAGGGCTLPGRSKVLMPSEGYEGVVKFVFE
// NISTLAVNACPPVLVGVGIATSVETAAVLSRKAILRPIGSRHPNPKAAELELRLEEGLNR
// LGIGPQGLTGNSSVMGVHIESAARHPSTIGVAVSTGCWAHRRGTLLVHADLTFENLSHTR
// SAL
// /\
// MMSESNKQQAVNKLTEIVANFTAMISTRMPDDVVDKLKQLKDAETSSMGKIIYHTMFDNM
// QKAIDLNRPACQDTGEIMFFVKVGSRFPLLGELQSILKQAVEEATVKAPLRHNAVEIFDE
// VNTGKNTGSGVPWVTWDIIPDNDDAEIEVYMAGGGCTLPGRSKVLMPSEGYEGVVKFVFE
// NISTLAVNACPPVLVGVGIATSVETAAVLSRKAILRPIGSRHPNPKAAELELRLEEGLNR
// LGIGPQGLTGNSSVMGVHIESAARHPSTIGVAVSTGCWAHRRGTLLVHADLTFENLSHTR
// SAL
# PROSITE_Motif:
Not Available
# Important_Sites:
Not Available
# Transmembrane:
Not Available
# Cys/Met_Content:
1.3 %Cys (Translated Protein)
3.6 %Met (Translated Protein)
5.0 %Cys+Met (Translated Protein)
1.3 %Cys (Mature Protein)
3.6 %Met (Mature Protein)
5.0 %Cys+Met (Mature Protein)
# Secondary_Structure:
>TTDA_ECOLI (Translated Protein)
MMSESNKQQALNKLTEIVANFTAMISTRMPDDVVDKLKQLKDAETSSMGKIIYHTMFDNM
CCCCCCHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHCCCCCHHHHHHHHHHHHHH
QKAIDLNRPACQDTGEIMFFVKVGSRFPLLGELQSILKQAVEEATVKAPLRHNAVEIFDE
HHHHHCCCCCCCCCCEEEEEEECCCCCCCCCCHHHHHHHHHHHHHHHCCCCCCCCEECCC
VNTGKNTGSGVPWVTWDIIPDNDDAEIEVYMAGGGCTLPGRSKVLMPSEGYEGVVKFVFE
CCCCCCCCCCCCEEEEEEECCCCCEEEEEEECCCCCCCHHHHCCCCCCCHHHHHHHHHHH
NISTLAVNACPPVLVGVGIATSVETAAVLSRKAILRPIGSRHPNPKAAELDVRLEEGLNR
HHHHHCCCCCCCEEEEEEEECCHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHH
LGIGPQGLTGNSSVMGVHIESAARHPSTIGVAVSTGCWAHRRGTLLVHADLTFENLSHTR
CCCCCCCCCCEEEEEEEEEEECCCCCCCEEEEEECCCEEEECCEEEECHHEEEECHHHHH
SAL
CCC
/\
>TTDA_ECOLI (Mature Protein)
MSESNKQQALNKLTEIVANFTAMISTRMPDDVVDKLKQLKDAETSSMGKIIYHTMFDNMQ
CCCCCHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHH
KAIDLNRPACQDTGEIMFFVKVGSRFPLLGELQSILKQAVEEATVKAPLRHNAVEIFDEV
HHHHCCCCCCCCCCEEEEEEECCCCCCCCCCHHHHHHHHHHHHHHHCCCCCCCCEECCCC
NTGKNTGSGVPWVTWDIIPDNDDAEIEVYMAGGGCTLPGRSKVLMPSEGYEGVVKFVFEN
CCCCCCCCCCCEEEEEEECCCCCEEEEEEECCCCCCCHHHHCCCCCCCHHHHHHHHHHHH
ISTLAVNACPPVLVGVGIATSVETAAVLSRKAILRPIGSRHPNPKAAELDVRLEEGLNRL
HHHHCCCCCCCEEEEEEEECCHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHC
GIGPQGLTGNSSVMGVHIESAARHPSTIGVAVSTGCWAHRRGTLLVHADLTFENLSHTRS
CCCCCCCCCEEEEEEEEEEECCCCCCCEEEEEECCCEEEECCEEEECHHEEEECHHHHHC
AL
CC
# PDB_Accession:
& Not Available
# Resolution:
Not Available
# Structure_CLASS:
Alpha Beta
# Quaternary_Structure:
heterotetrameric A2B2 complex of ttdA (2x) and ttdB (2x)
# Interacting_Partners:
1) ttdA, 2) ttdB,
# Cofactors:
Iron-sulfur.
# Metals_Ions:
--Iron (By similarity)
# Kcat_Value_[1/min]:
Not Available
# Specific_Activity_[micromol/min/mg]:
Not Available
# Km_Value_[mM]:
0.76 {(R,R)-tartrate}
# Substrates:
L-tartrate
# Products:
H2O + Oxaloacetate
# Specific_Reaction:
L-tartrate --> H2O + Oxaloacetate
# General_Reaction:
Elimination of H2O C-O bond; Cleavage
# Inhibitor:
Not Available
# Priority:
7.6
# Status:
Not Available
# Availability:
Not Available
#END_ECARDFILE
#BEGIN_ECARDFILE
# Entry_ID:
CC0769A.1
# Accession_No.:
UA0000769
# Name:
Glycine betaine/L-proline transport ATP-binding protein proV
# Alternate_Names:
Not Available
# General_Function:
Transport and binding proteins; Member of the ATP-binding Cassette (ABC) Superfamily; P-loop containing nucleotide triphosphate hydrolases
# COG_Function:
Amino acid transport and metabolism (code E)
# COG_ID:
COG4175 ABC-type proline/glycine betaine transport system, ATPase component (Evalue = 0.0)
# Specific_Function:
Involved in a multicomponent binding-protein-dependent transport system for glycine betaine/L-proline. Genes proV-proW-proX are regulated by attenuation.
# Riley_Gene_Function:
glycine/betaine/proline transporter subunit; ATP-binding compoent of ABC superfamily
# Riley_Cell_Function:
>>>
Metabolism
Building block biosynthesis
Amino acids
Proline
||
>>>
Transport
Primary Active Transporters
Pyrophosphate Bond (ATP; GTP; P2) Hydrolysis-driven Active Transporters
The ATP-binding Cassette (ABC) Superfamily + ABC-type Uptake Permeases
ATP binding component
||
>>>
Transport
substrate
glycine betaine/proline
||
>>>
Location of gene products
Cytoplasm
# Gene_Ontology:
>>>
Function: binding
Function: nucleotide binding
||
>>>
Function: binding
Function: nucleotide binding
Function: purine nucleotide binding
Function: adenyl nucleotide binding
Function: ATP binding
||
>>>
Function: binding
Function: nucleotide binding
Function: purine nucleotide binding
Function: adenyl nucleotide binding
Function: ATP binding
||
>>>
Process: physiological process
Process: cellular physiological process
Process: transport
Process: amine transport
Process: amino acid transport
||
>>>
Process: organic acid transport
Process: carboxylic acid transport
Process: amino acid transport
||
>>>
Process: localization
Process: establishment of localization
Process: transport
Process: amine transport
Process: amino acid transport
||
>>>
Process: organic acid transport
Process: carboxylic acid transport
Process: amino acid transport
||
>>>
Process: cellular process
Process: cellular physiological process
Process: transport
Process: amine transport
Process: amino acid transport
||
>>>
Process: organic acid transport
Process: carboxylic acid transport
Process: amino acid transport
||
>>>
Component: cell
Component: membrane
# Location:
Inner Membrane-Associated
# Blattner_Number:
b2677
# Gene_Sequence:
ATGGCAATTAAATTAGAAATTAAAAATCTTTATAAAATATTTGGCGAGCATCCACAGCGAGCGTTCAAAT
ATATCGAACAAGGACTTTCAAAAGAACAAATTCTGGAAAAAACTGGGCTATCGCTTGGCGTAAAAGACGC
CAGTCTGGCCATTGAAGAAGGCGAGATATTTGTCATCATGGGATTATCCGGCTCGGGTAAATCCACAATG
GTACGCCTTCTCAATCGCCTGATTGAACCCACCCGCGGGCAAGTGCTGATTGATGGTGTGGATATTGCCA
AAATATCCGACGCCGAACTCCGTGAGGTGCGCAGAAAAAAGATTGCGATGGTCTTCCAGTCCTTTGCCTT
AATGCCGCATATGACCGTGCTGGACAATACTGCGTTCGGTATGGAATTGGCCGGAATTAATGCCGAAGAA
CGCCGGGAAAAAGCCCTTGATGCACTGCGTCAGGTCGGGCTGGAAAATTATGCCCACAGCTACCCGGATG
AACTCTCTGGCGGGATGCGTCAACGTGTGGGATTAGCCCGCGCGTTAGCGATTAATCCGGATATATTATT
AATGGACGAAGCCTTCTCGGCGCTCGATCCATTAATTCGCACCGAGATGCAGGATGAGCTGGTAAAATTA
CAGGCGAAACATCAGCGCACCATTGTCTTTATTTCCCACGATCTTGATGAAGCCATGCGTATTGGCGACC
GAATTGCCATTATGCAAAATGGTGAAGTGGTACAGGTCGGCACACCGGATGAAATTCTCAATAATCCGGC
GAATGATTATGTCCGTACCTTCTTCCGTGGCGTTGATATTAGTCAGGTATTCAGTGCGAAAGATATTGCC
CGCCGGACACCGAATGGCTTAATTCGTAAAACCCCTGGCTTCGGCCCACGTTCGGCACTGAAATTATTGC
AGGATGAAGATCGCGAATATGGCTACGTTATCGAACGCGGTAATAAGTTTGTCGGCGCAGTCTCCATCGA
TTCGCTTAAAACCGCGTTAACGCAGCAGCAAGGTCTTGATGCGGCGCTGATTGATGCGCCGTTAGCAGTC
GATGCACAAACGCCTCTTAGCGAGTTGCTCTCTCATGTCGGACAGGCACCCTGTGCGGTGCCCGTGGTCG
ACGAGGACCAACAGTATGTCGGCATCATTTCGAAAGGAATGCTGCTGCGCGCTTTAGATCGTGAGGGGGT
AAATAATGGCTGA
# Upstream_100_bases:
AGGGGTTGCCTCAGATTCTCAGTATGTTAGGGTAGAAAAAAGTGACTATTTCCATTGGGTAATATATCGA
CATAGACAAATAAAGGAATCTTTCTATTGC
# Blattner_No_Ontology:
Transport and binding proteins
# Gene_Position:
2802837-2804039 (Clockwise)
# Centisome_Position:
60.410
# Gene_Name:
proV
# GC_Content:
49.04%
# Metabolic_Importance:
Non_Essential
# Preceding_Gene:
nrdF
# Following_Gene:
proW
# Operon_Status:
Yes
# Operon_Components:
proV_proW_proX Ref: Center for Information Biology and DNA Data Bank of Japan, National Institute of Genetics http://www.cib.nig.ac.jp/dda/taitoh/ecoli.operon.html
# Paralogues:
b0855 (potG) 40; b1291 (sapD) 26;
# Copy Number:
Unknown
# RNA_Copy_No.:
Log phase (2max): 0.11
Stationary phase (2max): 0.12
Ref: Nature Biotech., 18, 1262-68, Dec. 2000 (PMID=11101804)
# Genbank_ID_(DNA):
G1789032
# Genbank_ID_(Protein):
AAC75724.1
# SWISS_PROT_(AC_&_ID):
$ PROV_ECOLI (P14175)
# 2D_Gel_Image:
Not Available
# Other_Databases:
- ECO2DBASE: G033.5
- ECOCYC: EG10771
- EcoGene: EG10771
- EMBL: M24856
- InterPro: IPR003593; IPR003439; IPR000644; IPR005892
- Pfam: PF00005; PF00571
- PIR: JS0128
- PROSITE: PS00211
# Pfam_Domain/Function:
PF00005 ABC transporter; PF00571 CBS domain;
# Homologues:
Organism=Homo sapiens, GI4501849, Length=1704, Positives=53%, Blast Score=114
Organism=Homo sapiens, GI36413607, Length=812, Positives=55%, Blast Score=114
Organism=Homo sapiens, GI42741659, Length=1280, Positives=53%, Blast Score=108
Organism=Homo sapiens, GI4557876, Length=2273, Positives=54%, Blast Score=108
Organism=Homo sapiens, GI21536378, Length=1321, Positives=50%, Blast Score=108
Organism=Homo sapiens, GI9961244, Length=738, Positives=54%, Blast Score=107
Organism=Homo sapiens, GI9961252, Length=1232, Positives=53%, Blast Score=105
Organism=Homo sapiens, GI4505771, Length=1279, Positives=53%, Blast Score=105
Organism=Homo sapiens, GI9961250, Length=1286, Positives=53%, Blast Score=104
Organism=Homo sapiens, GI47078218, Length=2466, Positives=47%, Blast Score=103
Organism=Homo sapiens, GI45446740, Length=2436, Positives=47%, Blast Score=103
Organism=Homo sapiens, GI6005804, Length=718, Positives=51%, Blast Score=102
Organism=Homo sapiens, GI9955963, Length=842, Positives=53%, Blast Score=99.0
Organism=Homo sapiens, GI31657092, Length=5058, Positives=50%, Blast Score=99.0
Organism=Homo sapiens, GI27436953, Length=1617, Positives=53%, Blast Score=97.1
Organism=Homo sapiens, GI4557481, Length=1545, Positives=49%, Blast Score=96.3
Organism=Homo sapiens, GI21536376, Length=2261, Positives=52%, Blast Score=95.5
Organism=Homo sapiens, GI42490749, Length=753, Positives=50%, Blast Score=95.1
Organism=Homo sapiens, GI30795238, Length=2595, Positives=50%, Blast Score=90.5
Organism=Homo sapiens, GI27881501, Length=2277, Positives=50%, Blast Score=90.5
Organism=Homo sapiens, GI25914749, Length=1464, Positives=54%, Blast Score=90.1
Organism=Homo sapiens, GI9955968, Length=723, Positives=49%, Blast Score=88.2
Organism=Homo sapiens, GI9955966, Length=766, Positives=49%, Blast Score=88.2
Organism=Homo sapiens, GI45243524, Length=766, Positives=49%, Blast Score=88.2
Organism=Homo sapiens, GI9665248, Length=808, Positives=50%, Blast Score=87.8
Organism=Homo sapiens, GI27502429, Length=1543, Positives=51%, Blast Score=87.8
Organism=Homo sapiens, GI27477117, Length=1435, Positives=50%, Blast Score=86.7
Organism=Homo sapiens, GI27477115, Length=1624, Positives=50%, Blast Score=86.7
Organism=Homo sapiens, GI9961246, Length=703, Positives=53%, Blast Score=85.9
Organism=Homo sapiens, GI27262626, Length=1642, Positives=47%, Blast Score=85.9
Organism=Homo sapiens, GI27262624, Length=1642, Positives=47%, Blast Score=85.9
Organism=Homo sapiens, GI9506365, Length=2146, Positives=49%, Blast Score=85.1
Organism=Homo sapiens, GI15451838, Length=2008, Positives=49%, Blast Score=85.1
Organism=Homo sapiens, GI6715561, Length=1503, Positives=47%, Blast Score=82.0
Organism=Homo sapiens, GI46592978, Length=663, Positives=47%, Blast Score=80.5
Organism=Homo sapiens, GI46592971, Length=644, Positives=47%, Blast Score=80.5
Organism=Homo sapiens, GI46592964, Length=668, Positives=47%, Blast Score=80.5
Organism=Homo sapiens, GI46592956, Length=677, Positives=47%, Blast Score=80.5
Organism=Homo sapiens, GI46592915, Length=678, Positives=47%, Blast Score=80.5
Organism=Homo sapiens, GI46592898, Length=666, Positives=47%, Blast Score=80.5
Organism=Homo sapiens, GI5032101, Length=1437, Positives=48%, Blast Score=79.3
Organism=Homo sapiens, GI21729873, Length=1382, Positives=48%, Blast Score=79.0
Organism=Homo sapiens, GI15149474, Length=1382, Positives=48%, Blast Score=79.0
Organism=Homo sapiens, GI6005701, Length=1581, Positives=51%, Blast Score=78.6
Organism=Homo sapiens, GI9955960, Length=1482, Positives=51%, Blast Score=77.8
Organism=Homo sapiens, GI9955958, Length=1489, Positives=51%, Blast Score=77.8
Organism=Homo sapiens, GI9955954, Length=1416, Positives=51%, Blast Score=77.8
Organism=Homo sapiens, GI9955952, Length=1475, Positives=51%, Blast Score=77.8
Organism=Homo sapiens, GI9955950, Length=1472, Positives=51%, Blast Score=77.8
Organism=Homo sapiens, GI4826838, Length=1531, Positives=51%, Blast Score=77.8
Organism=Homo sapiens, GI46592984, Length=824, Positives=49%, Blast Score=77.8
Organism=Homo sapiens, GI20143975, Length=646, Positives=49%, Blast Score=77.8
Organism=Homo sapiens, GI9955970, Length=1527, Positives=49%, Blast Score=77.4
Organism=Homo sapiens, GI11967969, Length=651, Positives=50%, Blast Score=77.4
Organism=Homo sapiens, GI11967971, Length=673, Positives=47%, Blast Score=76.6
Organism=Homo sapiens, GI10947122, Length=1549, Positives=50%, Blast Score=74.7
Organism=Homo sapiens, GI9961248, Length=653, Positives=53%, Blast Score=73.2
Organism=Homo sapiens, GI5032135, Length=1549, Positives=49%, Blast Score=72.0
Organism=Homo sapiens, GI10947124, Length=1513, Positives=49%, Blast Score=72.0
Organism=Homo sapiens, GI6995996, Length=1480, Positives=44%, Blast Score=70.9
Organism=Homo sapiens, GI4507317, Length=1581, Positives=48%, Blast Score=70.1
Organism=Homo sapiens, GI5031915, Length=1325, Positives=46%, Blast Score=67.4
Organism=Homo sapiens, GI21729892, Length=1009, Positives=47%, Blast Score=66.2
Organism=Homo sapiens, GI21729890, Length=1009, Positives=47%, Blast Score=66.2
Organism=Homo sapiens, GI21729888, Length=935, Positives=47%, Blast Score=66.2
Organism=Homo sapiens, GI21729886, Length=1009, Positives=47%, Blast Score=66.2
Organism=Homo sapiens, GI15100172, Length=1359, Positives=47%, Blast Score=66.2
Organism=Caenorhabditis elegans, GI17508505, Length=1265, Positives=53%, Blast Score=123
Organism=Caenorhabditis elegans, GI17569907, Length=1225, Positives=47%, Blast Score=111
Organism=Caenorhabditis elegans, GI17569909, Length=1269, Positives=47%, Blast Score=111
Organism=Caenorhabditis elegans, GI17541710, Length=1321, Positives=52%, Blast Score=111
Organism=Caenorhabditis elegans, GI17550138, Length=1283, Positives=54%, Blast Score=110
Organism=Caenorhabditis elegans, GI17551158, Length=1283, Positives=53%, Blast Score=109
Organism=Caenorhabditis elegans, GI17558664, Length=1294, Positives=50%, Blast Score=108
Organism=Caenorhabditis elegans, GI17543740, Length=633, Positives=51%, Blast Score=108
Organism=Caenorhabditis elegans, GI17509565, Length=787, Positives=51%, Blast Score=105
Organism=Caenorhabditis elegans, GI17561534, Length=733, Positives=50%, Blast Score=104
Organism=Caenorhabditis elegans, GI17567267, Length=1291, Positives=50%, Blast Score=104
Organism=Caenorhabditis elegans, GI17565938, Length=807, Positives=52%, Blast Score=104
Organism=Caenorhabditis elegans, GI17567271, Length=1270, Positives=48%, Blast Score=102
Organism=Caenorhabditis elegans, GI17533971, Length=761, Positives=52%, Blast Score=100
Organism=Caenorhabditis elegans, GI17569145, Length=1266, Positives=53%, Blast Score=100
Organism=Caenorhabditis elegans, GI25146777, Length=1243, Positives=50%, Blast Score=100
Organism=Caenorhabditis elegans, GI17567265, Length=1318, Positives=49%, Blast Score=98.6
Organism=Caenorhabditis elegans, GI17567269, Length=1327, Positives=48%, Blast Score=97.8
Organism=Caenorhabditis elegans, GI17511077, Length=815, Positives=52%, Blast Score=97.4
Organism=Caenorhabditis elegans, GI17532731, Length=1239, Positives=51%, Blast Score=95.9
Organism=Caenorhabditis elegans, GI17538892, Length=586, Positives=48%, Blast Score=95.5
Organism=Caenorhabditis elegans, GI25150042, Length=801, Positives=47%, Blast Score=95.5
Organism=Caenorhabditis elegans, GI17569143, Length=1268, Positives=52%, Blast Score=94.0
Organism=Caenorhabditis elegans, GI17540696, Length=1431, Positives=48%, Blast Score=93.2
Organism=Caenorhabditis elegans, GI17552722, Length=1704, Positives=51%, Blast Score=93.2
Organism=Caenorhabditis elegans, GI32563749, Length=785, Positives=52%, Blast Score=92.8
Organism=Caenorhabditis elegans, GI25143468, Length=565, Positives=51%, Blast Score=92.0
Organism=Caenorhabditis elegans, GI25143629, Length=619, Positives=51%, Blast Score=91.3
Organism=Caenorhabditis elegans, GI17565586, Length=1802, Positives=54%, Blast Score=90.5
Organism=Caenorhabditis elegans, GI17510237, Length=1564, Positives=48%, Blast Score=90.5
Organism=Caenorhabditis elegans, GI25141343, Length=1547, Positives=46%, Blast Score=90.5
Organism=Caenorhabditis elegans, GI17569081, Length=1525, Positives=51%, Blast Score=82.4
Organism=Caenorhabditis elegans, GI17567243, Length=1573, Positives=49%, Blast Score=80.9
Organism=Caenorhabditis elegans, GI32566680, Length=1119, Positives=50%, Blast Score=80.1
Organism=Caenorhabditis elegans, GI17551700, Length=1427, Positives=50%, Blast Score=77.8
Organism=Caenorhabditis elegans, GI17551702, Length=1400, Positives=50%, Blast Score=77.8
Organism=Caenorhabditis elegans, GI17568267, Length=1528, Positives=50%, Blast Score=76.6
Organism=Caenorhabditis elegans, GI17556528, Length=1144, Positives=48%, Blast Score=75.9
Organism=Caenorhabditis elegans, GI17551372, Length=1398, Positives=45%, Blast Score=70.5
Organism=Caenorhabditis elegans, GI17532885, Length=658, Positives=44%, Blast Score=65.5
Organism=Caenorhabditis elegans, GI32564669, Length=684, Positives=46%, Blast Score=65.1
Organism=Caenorhabditis elegans, GI17567189, Length=1421, Positives=46%, Blast Score=64.7
Organism=Saccharomyces cerevisiae, GI37362699, Length=773, Positives=47%, Blast Score=98.6
Organism=Saccharomyces cerevisiae, GI6322640, Length=1290, Positives=56%, Blast Score=93.2
Organism=Saccharomyces cerevisiae, GI6323959, Length=690, Positives=49%, Blast Score=86.3
Organism=Saccharomyces cerevisiae, GI6323217, Length=695, Positives=50%, Blast Score=82.0
Organism=Saccharomyces cerevisiae, GI6321720, Length=1477, Positives=48%, Blast Score=77.8
Organism=Saccharomyces cerevisiae, GI6320339, Length=1515, Positives=52%, Blast Score=75.9
Organism=Saccharomyces cerevisiae, GI6323014, Length=1559, Positives=48%, Blast Score=74.3
Organism=Saccharomyces cerevisiae, GI10383780, Length=1049, Positives=50%, Blast Score=72.4
Organism=Saccharomyces cerevisiae, GI6321752, Length=1592, Positives=45%, Blast Score=71.2
Organism=Saccharomyces cerevisiae, GI6322956, Length=1218, Positives=42%, Blast Score=70.1
Organism=Saccharomyces cerevisiae, GI6322980, Length=1661, Positives=48%, Blast Score=69.7
Organism=Saccharomyces cerevisiae, GI6324498, Length=1294, Positives=48%, Blast Score=66.2
Organism=Mus musculus, GI51767198, Length=1459, Positives=55%, Blast Score=115
Organism=Mus musculus, GI9506367, Length=715, Positives=55%, Blast Score=109
Organism=Mus musculus, GI6671495, Length=2310, Positives=54%, Blast Score=109
Organism=Mus musculus, GI27754190, Length=1704, Positives=49%, Blast Score=108
Organism=Mus musculus, GI6679297, Length=1276, Positives=53%, Blast Score=107
Organism=Mus musculus, GI6755048, Length=1276, Positives=55%, Blast Score=107
Organism=Mus musculus, GI27753995, Length=717, Positives=51%, Blast Score=107
Organism=Mus musculus, GI6755046, Length=1276, Positives=54%, Blast Score=106
Organism=Mus musculus, GI11038656, Length=1321, Positives=52%, Blast Score=106
Organism=Mus musculus, GI46358378, Length=1668, Positives=48%, Blast Score=105
Organism=Mus musculus, GI11993939, Length=2434, Positives=52%, Blast Score=103
Organism=Mus musculus, GI51766346, Length=5086, Positives=50%, Blast Score=98.2
Organism=Mus musculus, GI17647117, Length=842, Positives=53%, Blast Score=96.7
Organism=Mus musculus, GI34577069, Length=2261, Positives=52%, Blast Score=95.1
Organism=Mus musculus, GI24850123, Length=1501, Positives=52%, Blast Score=94.7
Organism=Mus musculus, GI21553091, Length=1460, Positives=52%, Blast Score=94.7
Organism=Mus musculus, GI38086485, Length=776, Positives=51%, Blast Score=93.6
Organism=Mus musculus, GI11184219, Length=1543, Positives=49%, Blast Score=91.7
Organism=Mus musculus, GI22267462, Length=1624, Positives=51%, Blast Score=90.1
Organism=Mus musculus, GI23346593, Length=1620, Positives=52%, Blast Score=89.7
Organism=Mus musculus, GI22267466, Length=1623, Positives=50%, Blast Score=89.4
Organism=Mus musculus, GI9845230, Length=762, Positives=48%, Blast Score=88.6
Organism=Mus musculus, GI15451840, Length=2159, Positives=47%, Blast Score=87.8
Organism=Mus musculus, GI23956076, Length=1620, Positives=53%, Blast Score=87.4
Organism=Mus musculus, GI46399206, Length=702, Positives=54%, Blast Score=85.5
Organism=Mus musculus, GI46369473, Length=1677, Positives=51%, Blast Score=84.3
Organism=Mus musculus, GI22267468, Length=1642, Positives=52%, Blast Score=83.6
Organism=Mus musculus, GI9055156, Length=1498, Positives=47%, Blast Score=82.8
Organism=Mus musculus, GI6678848, Length=1528, Positives=48%, Blast Score=82.8
Organism=Mus musculus, GI14141178, Length=652, Positives=49%, Blast Score=82.8
Organism=Mus musculus, GI7305539, Length=724, Positives=48%, Blast Score=82.8
Organism=Mus musculus, GI6752940, Length=666, Positives=47%, Blast Score=81.3
Organism=Mus musculus, GI7304851, Length=1436, Positives=48%, Blast Score=80.1
Organism=Mus musculus, GI51766377, Length=1523, Positives=51%, Blast Score=78.2
Organism=Mus musculus, GI17530789, Length=673, Positives=47%, Blast Score=78.2
Organism=Mus musculus, GI31981683, Length=646, Positives=49%, Blast Score=76.6
Organism=Mus musculus, GI6755696, Length=1546, Positives=49%, Blast Score=75.1
Organism=Mus musculus, GI11038664, Length=1546, Positives=49%, Blast Score=72.8
Organism=Mus musculus, GI31541971, Length=774, Positives=44%, Blast Score=71.6
Organism=Mus musculus, GI11038668, Length=1546, Positives=49%, Blast Score=71.6
Organism=Mus musculus, GI11038666, Length=1511, Positives=49%, Blast Score=71.6
Organism=Mus musculus, GI51770094, Length=720, Positives=58%, Blast Score=70.1
Organism=Mus musculus, GI51705070, Length=1234, Positives=49%, Blast Score=69.7
Organism=Drosophila melanogaster, GI24643674, Length=1713, Positives=53%, Blast Score=108
Organism=Drosophila melanogaster, GI24641565, Length=761, Positives=52%, Blast Score=107
Organism=Drosophila melanogaster, GI21357851, Length=606, Positives=51%, Blast Score=107
Organism=Drosophila melanogaster, GI45551502, Length=709, Positives=51%, Blast Score=107
Organism=Drosophila melanogaster, GI45551501, Length=743, Positives=51%, Blast Score=107
Organism=Drosophila melanogaster, GI24648314, Length=1491, Positives=46%, Blast Score=106
Organism=Drosophila melanogaster, GI17136662, Length=1302, Positives=53%, Blast Score=103
Organism=Drosophila melanogaster, GI24659289, Length=1320, Positives=52%, Blast Score=102
Organism=Drosophila melanogaster, GI24666092, Length=1526, Positives=55%, Blast Score=102
Organism=Drosophila melanogaster, GI22026798, Length=1287, Positives=52%, Blast Score=100
Organism=Drosophila melanogaster, GI24666061, Length=1660, Positives=52%, Blast Score=100
Organism=Drosophila melanogaster, GI23397593, Length=692, Positives=50%, Blast Score=99.8
Organism=Drosophila melanogaster, GI24653245, Length=1302, Positives=52%, Blast Score=99.0
Organism=Drosophila melanogaster, GI28574150, Length=1544, Positives=55%, Blast Score=98.6
Organism=Drosophila melanogaster, GI21357907, Length=866, Positives=48%, Blast Score=95.1
Organism=Drosophila melanogaster, GI45552363, Length=1548, Positives=49%, Blast Score=89.0
Organism=Drosophila melanogaster, GI45552355, Length=1548, Positives=49%, Blast Score=89.0
Organism=Drosophila melanogaster, GI45552335, Length=1548, Positives=49%, Blast Score=89.0
Organism=Drosophila melanogaster, GI45552341, Length=1549, Positives=49%, Blast Score=89.0
Organism=Drosophila melanogaster, GI24583969, Length=1548, Positives=49%, Blast Score=89.0
Organism=Drosophila melanogaster, GI45552337, Length=1548, Positives=49%, Blast Score=89.0
Organism=Drosophila melanogaster, GI45552361, Length=1548, Positives=49%, Blast Score=89.0
Organism=Drosophila melanogaster, GI45552339, Length=1548, Positives=49%, Blast Score=89.0
Organism=Drosophila melanogaster, GI45552343, Length=1548, Positives=49%, Blast Score=89.0
Organism=Drosophila melanogaster, GI45552357, Length=1548, Positives=49%, Blast Score=89.0
Organism=Drosophila melanogaster, GI45552345, Length=1548, Positives=49%, Blast Score=89.0
Organism=Drosophila melanogaster, GI45552359, Length=1549, Positives=49%, Blast Score=89.0
Organism=Drosophila melanogaster, GI45550972, Length=1549, Positives=49%, Blast Score=89.0
Organism=Drosophila melanogaster, GI45552353, Length=1548, Positives=49%, Blast Score=89.0
Organism=Drosophila melanogaster, GI45552347, Length=1548, Positives=49%, Blast Score=89.0
Organism=Drosophila melanogaster, GI45552349, Length=1548, Positives=49%, Blast Score=89.0
Organism=Drosophila melanogaster, GI45552351, Length=1548, Positives=49%, Blast Score=89.0
Organism=Drosophila melanogaster, GI28573573, Length=1625, Positives=52%, Blast Score=88.2
Organism=Drosophila melanogaster, GI28573571, Length=1665, Positives=52%, Blast Score=88.2
Organism=Drosophila melanogaster, GI24643648, Length=1591, Positives=47%, Blast Score=85.9
Organism=Drosophila melanogaster, GI28571209, Length=181